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ONTOLOGY REPORT - ANNOTATIONS


Term:negative regulation of collagen metabolic process
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Accession:GO:0010713 term browser browse the term
Definition:Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the metabolism of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.



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negative regulation of collagen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 1810013A23Rik RIKEN cDNA 1810013A23 gene ISO RGD PMID:17346664 RGD:2324888 NCBI chr17:28,490,682...28,492,137
Ensembl chr17:28,451,674...28,520,448
JBrowse link
G Adora2b adenosine A2b receptor involved_in ISO RGD
MGI
PMID:9535419 GO_REF:0000096 MGI:4417868 RGD:2316149 NCBI chr11:62,139,810...62,157,278
Ensembl chr11:62,139,810...62,157,279
JBrowse link
G Ager advanced glycosylation end product-specific receptor involved_in ISO RGD
MGI
PMID:21872885 GO_REF:0000096 MGI:4417868 RGD:7245949 NCBI chr17:34,816,545...34,819,911
Ensembl chr17:34,816,836...34,819,910
JBrowse link
G Cygb cytoglobin involved_in ISO RGD
MGI
PMID:20719976 GO_REF:0000096 MGI:4417868 RGD:9685174 NCBI chr11:116,536,421...116,545,330
Ensembl chr11:116,536,421...116,545,139
JBrowse link
G Cyp2j6 cytochrome P450, family 2, subfamily j, polypeptide 6 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 4:96,404,375...96,452,513
Ensembl chr 4:96,404,375...96,441,898
JBrowse link
G Cyp2j9 cytochrome P450, family 2, subfamily j, polypeptide 9 ISO RGD PMID:25840911 PMID:29656108 RGD:12904676 RGD:150520032 NCBI chr 4:96,456,661...96,480,748
Ensembl chr 4:96,456,666...96,479,815
JBrowse link
G Cyp7a1 cytochrome P450, family 7, subfamily a, polypeptide 1 involved_in ISO RGD
MGI
PMID:15521018 GO_REF:0000096 MGI:4417868 RGD:15045602 NCBI chr 4:6,265,612...6,275,632
Ensembl chr 4:6,265,612...6,275,633
JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IMP (MGI:5605894|PMID:25056700) BHF-UCL PMID:25056700 MGI:5605894 NCBI chr 5:31,070,729...31,078,623
Ensembl chr 5:31,070,746...31,078,621
JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 involved_in ISO RGD
MGI
PMID:19204184 GO_REF:0000096 MGI:4417868 RGD:9685562 NCBI chr 4:150,938,253...150,953,346
Ensembl chr 4:150,938,376...150,953,349
JBrowse link
G Fn1 fibronectin 1 involved_in ISO RGD
MGI
PMID:15980055 GO_REF:0000096 MGI:4417868 RGD:1625201 NCBI chr 1:71,624,632...71,692,439
Ensembl chr 1:71,624,679...71,692,359
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1, soluble involved_in ISO RGD
MGI
PMID:26880260 GO_REF:0000096 MGI:4417868 RGD:13504840 NCBI chr19:43,488,191...43,514,743
Ensembl chr19:43,488,191...43,513,044
JBrowse link
G Il6 interleukin 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979
JBrowse link
G Il6ra interleukin 6 receptor, alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:89,776,631...89,820,503
Ensembl chr 3:89,771,366...89,820,503
JBrowse link
G Mir218-1 microRNA 218-1 involved_in ISO (PMID:19913496) BHF-UCL PMID:19913496 NCBI chr 5:48,381,284...48,381,393
Ensembl chr 5:48,381,284...48,381,393
JBrowse link
G Mir218-2 microRNA 218-2 involved_in ISO (PMID:19913496) BHF-UCL PMID:19913496 NCBI chr11:35,507,643...35,507,752
Ensembl chr11:35,507,643...35,507,752
JBrowse link
G Mir29a microRNA 29a involved_in ISO (PMID:20067797) BHF-UCL PMID:20067797 NCBI chr 6:31,039,595...31,039,682
Ensembl chr 6:31,039,595...31,039,682
JBrowse link
G Mir29b-1 microRNA 29b-1 involved_in ISO (PMID:19913496), (PMID:23221517)
(PMID:22269326)
BHF-UCL PMID:19913496 PMID:22269326 PMID:23221517 NCBI chr 6:31,039,958...31,040,028
Ensembl chr 6:31,039,958...31,040,028
JBrowse link
G Mir29b-2 microRNA 29b-2 involved_in ISO (PMID:19913496), (PMID:23221517)
(PMID:22269326)
BHF-UCL PMID:19913496 PMID:22269326 PMID:23221517 NCBI chr 1:194,719,348...194,719,428
Ensembl chr 1:194,719,348...194,719,428
JBrowse link
G Notch1 notch 1 ISO RGD PMID:28100501 RGD:152995503 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675
JBrowse link
G Nppc natriuretic peptide type C involved_in ISO RGD
MGI
PMID:12746286 GO_REF:0000096 MGI:4417868 RGD:1580115 NCBI chr 1:86,594,015...86,598,295
Ensembl chr 1:86,594,013...86,598,293
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 involved_in ISO RGD
MGI
PMID:15980055 GO_REF:0000096 MGI:4417868 RGD:1625201 NCBI chr10:89,290,096...89,369,484
Ensembl chr10:89,290,096...89,369,447
JBrowse link
G Ppard peroxisome proliferator activator receptor delta involved_in ISO RGD
MGI
PMID:17346664 GO_REF:0000096 MGI:4417868 RGD:2324888 NCBI chr17:28,451,657...28,520,446
Ensembl chr17:28,451,674...28,520,448
JBrowse link
G Pparg peroxisome proliferator activated receptor gamma involved_in ISO RGD
MGI
PMID:16202214 GO_REF:0000096 MGI:4417868 RGD:8553021 NCBI chr 6:115,337,840...115,467,365
Ensembl chr 6:115,337,912...115,467,360
JBrowse link
G Rap1a RAS-related protein 1a involved_in ISO RGD
MGI
PMID:22012077 GO_REF:0000096 MGI:4417868 RGD:9850086 NCBI chr 3:105,634,576...105,708,740
Ensembl chr 3:105,634,583...105,708,652
JBrowse link
G Rapgef3 Rap guanine nucleotide exchange factor (GEF) 3 involved_in ISO RGD
MGI
PMID:22012077 GO_REF:0000096 MGI:4417868 RGD:9850086 NCBI chr15:97,637,886...97,666,300
Ensembl chr15:97,642,651...97,665,853
JBrowse link
negative regulation of collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst3 cystatin C involved_in ISO (PMID:10545518) BHF-UCL PMID:10545518 NCBI chr 2:148,713,642...148,717,432
Ensembl chr 2:148,713,642...148,717,612
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28741
    negative regulation of biological process 6012
      negative regulation of metabolic process 3422
        negative regulation of collagen metabolic process 26
          negative regulation of collagen biosynthetic process 25
          negative regulation of collagen catabolic process 1
Path 2
Term Annotations click to browse term
  biological_process 28741
    biological regulation 13648
      regulation of biological process 12980
        negative regulation of biological process 6012
          negative regulation of metabolic process 3422
            negative regulation of collagen metabolic process 26
              negative regulation of collagen biosynthetic process 25
              negative regulation of collagen catabolic process 1
paths to the root