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ONTOLOGY REPORT - ANNOTATIONS


Term:negative regulation of collagen metabolic process
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Accession:GO:0010713 term browser browse the term
Definition:Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the metabolism of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.



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negative regulation of collagen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADORA2B adenosine A2b receptor ISO RGD PMID:9535419 RGD:2316149 NCBI chr17:15,850,362...15,975,746
Ensembl chr17:15,945,130...15,975,746
JBrowse link
G AGER advanced glycosylation end-product specific receptor ISO RGD PMID:21872885 RGD:7245949 NCBI chr 6:32,180,969...32,184,253
Ensembl chr 6:32,180,968...32,184,322
JBrowse link
G CIITA class II major histocompatibility complex transactivator involved_in IC (PMID:19041327) BHF-UCL
BHF-UCL
PMID:19041327 NCBI chr16:10,866,206...10,943,021
Ensembl chr16:10,866,222...10,943,021
JBrowse link
G CYGB cytoglobin involved_in IEA
ISO
Ensembl
RGD
Ensembl
PMID:20719976 GO_REF:0000107 RGD:9685174 NCBI chr17:76,527,356...76,551,193
Ensembl chr17:76,527,356...76,551,175
JBrowse link
G CYP2J2 cytochrome P450 family 2 subfamily J member 2 ISO RGD PMID:25840911 PMID:29656108 RGD:12904676 RGD:150520032 NCBI chr 1:59,893,308...59,969,212
Ensembl chr 1:59,893,308...59,926,773
JBrowse link
G CYP7A1 cytochrome P450 family 7 subfamily A member 1 involved_in IEA
ISO
Ensembl
RGD
Ensembl
PMID:15521018 GO_REF:0000107 RGD:15045602 NCBI chr 8:58,490,178...58,500,163
Ensembl chr 8:58,490,178...58,500,163
JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:27,078,615...27,086,403
Ensembl chr 2:27,078,615...27,086,403
JBrowse link
G ERRFI1 ERBB receptor feedback inhibitor 1 involved_in IEA
ISO
Ensembl
RGD
Ensembl
PMID:19204184 GO_REF:0000107 RGD:9685562 NCBI chr 1:8,011,727...8,026,309
Ensembl chr 1:8,004,404...8,026,309
JBrowse link
G FN1 fibronectin 1 ISO RGD PMID:15980055 RGD:1625201 NCBI chr 2:215,360,865...215,436,068
Ensembl chr 2:215,360,440...215,436,073
JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 ISO RGD PMID:26880260 RGD:13504840 NCBI chr10:99,396,870...99,430,624
Ensembl chr10:99,396,870...99,430,624
JBrowse link
G IL6 interleukin 6 involved_in IDA (PMID:12419823) BHF-UCL
BHF-UCL
PMID:12419823 NCBI chr 7:22,727,200...22,731,998
Ensembl chr 7:22,725,884...22,732,002
JBrowse link
G IL6R interleukin 6 receptor involved_in IDA (PMID:12419823) BHF-UCL
BHF-UCL
PMID:12419823 NCBI chr 1:154,405,343...154,469,450
Ensembl chr 1:154,405,193...154,469,450
JBrowse link
G MIR218-1 microRNA 218-1 involved_in IDA (PMID:19913496) BHF-UCL PMID:19913496 NCBI chr 4:20,528,275...20,528,384
Ensembl chr 4:20,528,275...20,528,384
JBrowse link
G MIR218-2 microRNA 218-2 involved_in IDA (PMID:19913496) BHF-UCL PMID:19913496 NCBI chr 5:168,768,146...168,768,255
Ensembl chr 5:168,768,146...168,768,255
JBrowse link
G MIR29A microRNA 29a involved_in IDA (PMID:20067797) BHF-UCL PMID:20067797 NCBI chr 7:130,876,747...130,876,810
Ensembl chr 7:130,876,747...130,876,810
JBrowse link
G MIR29B1 microRNA 29b-1 involved_in IDA
IGI
(PMID:19913496), (PMID:23221517)
(PMID:22269326)
BHF-UCL PMID:19913496 PMID:22269326 PMID:23221517 NCBI chr 7:130,877,459...130,877,539
Ensembl chr 7:130,877,459...130,877,539
JBrowse link
G MIR29B2 microRNA 29b-2 involved_in IGI
IDA
(PMID:22269326)
(PMID:19913496), (PMID:23221517)
BHF-UCL PMID:19913496 PMID:22269326 PMID:23221517 NCBI chr 1:207,802,443...207,802,523
Ensembl chr 1:207,802,443...207,802,523
JBrowse link
G MIR92A1 microRNA 92a-1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr13:91,351,314...91,351,391
Ensembl chr13:91,351,314...91,351,391
JBrowse link
G MIR92A2 microRNA 92a-2 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr  X:134,169,538...134,169,612
Ensembl chr  X:134,169,538...134,169,612
JBrowse link
G NOTCH1 notch receptor 1 ISO RGD PMID:28100501 RGD:152995503 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G NPPC natriuretic peptide C involved_in IEA
ISO
Ensembl
RGD
Ensembl
PMID:12746286 GO_REF:0000107 RGD:1580115 NCBI chr 2:231,921,809...231,926,396
Ensembl chr 2:231,921,809...231,926,396
JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:15980055 RGD:1625201 NCBI chr12:100,473,866...100,564,414
Ensembl chr12:100,473,708...100,564,414
JBrowse link
G PPARD peroxisome proliferator activated receptor delta involved_in ISO
IEA
RGD
Ensembl
Ensembl
PMID:17346664 GO_REF:0000107 RGD:2324888 NCBI chr 6:35,342,558...35,428,178
Ensembl chr 6:35,342,558...35,428,191
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma involved_in IEA
ISO
Ensembl
RGD
Ensembl
PMID:16202214 GO_REF:0000107 RGD:8553021 NCBI chr 3:12,287,368...12,434,344
Ensembl chr 3:12,287,368...12,434,356
JBrowse link
G RAP1A RAP1A, member of RAS oncogene family ISO RGD PMID:22012077 RGD:9850086 NCBI chr 1:111,542,009...111,716,691
Ensembl chr 1:111,542,218...111,716,691
JBrowse link
G RAPGEF3 Rap guanine nucleotide exchange factor 3 ISO RGD PMID:22012077 RGD:9850086 NCBI chr12:47,734,363...47,758,880
Ensembl chr12:47,734,363...47,771,040
JBrowse link
negative regulation of collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CST3 cystatin C involved_in IEP (PMID:10545518) BHF-UCL
BHF-UCL
PMID:10545518 NCBI chr20:23,626,706...23,637,955
Ensembl chr20:23,626,706...23,638,473
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19690
    negative regulation of biological process 6602
      negative regulation of metabolic process 3960
        negative regulation of collagen metabolic process 27
          negative regulation of collagen biosynthetic process 26
          negative regulation of collagen catabolic process 1
Path 2
Term Annotations click to browse term
  biological_process 19690
    biological regulation 13851
      regulation of biological process 13115
        negative regulation of biological process 6602
          negative regulation of metabolic process 3960
            negative regulation of collagen metabolic process 27
              negative regulation of collagen biosynthetic process 26
              negative regulation of collagen catabolic process 1
paths to the root