Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:negative regulation of gene expression
go back to main search page
Accession:GO:0010629 term browser browse the term
Definition:Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
Comment:This term covers any process that negatively regulates the rate of production of a mature gene product, and so includes processes that negatively regulate that rate by reducing the level, stability or availability of intermediates in the process of gene expression. For example, it covers any process that reduces the level, stability or availability of mRNA or circRNA for translation and thereby reduces the rate of production of the encoded protein via translation.
Synonyms:related_synonym: gene silencing



show annotations for term's descendants           Sort by:
 
negative regulation of gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCC2 ATP binding cassette subfamily C member 2 involved_in ISS ARUK-UCL GO_REF:0000024 NCBI chr10:99,782,602...99,853,741
Ensembl chr10:99,782,640...99,852,594
JBrowse link
G ACACB acetyl-CoA carboxylase beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:109,112,666...109,268,226
Ensembl chr12:109,116,595...109,268,226
JBrowse link
G ACE angiotensin I converting enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:63,477,061...63,498,373
Ensembl chr17:63,477,061...63,498,380
JBrowse link
G ACVR1B activin A receptor type 1B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5461254|PMID:23152446) Ensembl
MGI
PMID:23152446 GO_REF:0000107 MGI:5461254 NCBI chr12:51,951,696...51,997,078
Ensembl chr12:51,951,699...51,997,078
JBrowse link
G ACVRL1 activin A receptor like type 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr12:51,906,913...51,923,361
Ensembl chr12:51,906,908...51,923,361
JBrowse link
G ADAM10 ADAM metallopeptidase domain 10 acts_upstream_of_or_within IMP (PMID:24530397) ARUK-UCL PMID:24530397 NCBI chr15:58,588,809...58,749,707
Ensembl chr15:58,588,809...58,749,791
JBrowse link
G ADIPOR2 adiponectin receptor 2 ISO RGD PMID:29237572 RGD:24922203 NCBI chr12:1,691,059...1,788,674
Ensembl chr12:1,688,574...1,788,674
JBrowse link
G ADNP activity dependent neuroprotector homeobox involved_in IEA
ISO
p53 Ensembl
RGD
PMID:15314252 GO_REF:0000107 RGD:2312780 NCBI chr20:50,888,918...50,931,437
Ensembl chr20:50,888,916...50,931,437
JBrowse link
G AFF2 AF4/FMR2 family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5496978|PMID:23562910) Ensembl
MGI
PMID:23562910 GO_REF:0000107 MGI:5496978 NCBI chr  X:148,500,617...149,000,663
Ensembl chr  X:148,500,617...149,000,663
JBrowse link
G AGT angiotensinogen involved_in IDA (PMID:24296617) BHF-UCL PMID:24296617 NCBI chr 1:230,702,523...230,745,583
Ensembl chr 1:230,690,776...230,745,576
JBrowse link
G AIF1 allograft inflammatory factor 1 involved_in IEA
ISO
10 proteins, including ADAM3 Ensembl
RGD
PMID:16157606 GO_REF:0000107 RGD:2313017 NCBI chr 6:31,615,212...31,617,015
Ensembl chr 6:31,615,217...31,617,021
JBrowse link
G AKIRIN2 akirin 2 involved_in ISO
IEA
MKP-1 RGD
Ensembl
PMID:18460465 GO_REF:0000107 RGD:2306009 NCBI chr 6:87,674,860...87,702,233
Ensembl chr 6:87,674,860...87,702,233
JBrowse link
G AKT1 AKT serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:104,769,349...104,795,748
Ensembl chr14:104,769,349...104,795,751
JBrowse link
G ANAPC2 anaphase promoting complex subunit 2 involved_in IEA
ISO
Ppfia1 Ensembl
RGD
PMID:17419996 GO_REF:0000107 RGD:14696670 NCBI chr 9:137,174,784...137,188,585
Ensembl chr 9:137,174,784...137,188,560
JBrowse link
G ANXA7 annexin A7 involved_in IMP (PMID:24007983) UniProt PMID:24007983 NCBI chr10:73,375,101...73,414,058
Ensembl chr10:73,375,101...73,414,076
JBrowse link
G APLN apelin involved_in IGI (PMID:23263626) BHF-UCL PMID:23263626 NCBI chr  X:129,645,259...129,654,956
Ensembl chr  X:129,645,259...129,654,956
JBrowse link
G APLNR apelin receptor acts_upstream_of ISS BHF-UCL GO_REF:0000024 NCBI chr11:57,233,591...57,237,250
Ensembl chr11:57,233,577...57,237,235
JBrowse link
G APOE apolipoprotein E involved_in ISS ARUK-UCL GO_REF:0000024 NCBI chr19:44,905,796...44,909,393
Ensembl chr19:44,905,791...44,909,393
JBrowse link
G APP amyloid beta precursor protein involved_in IGI
TAS
IDA
(PMID:22198949), (PMID:27853422), (PMID:28008308), (PMID:29061364)
(PMID:20005821), (PMID:21803450)
(PMID:18234671)
(PMID:26006083)
ARUK-UCL PMID:18234671 PMID:20005821 PMID:21803450 PMID:22198949 PMID:26006083 More... NCBI chr21:25,880,550...26,171,128
Ensembl chr21:25,880,550...26,171,128
JBrowse link
G ATOH8 atonal bHLH transcription factor 8 involved_in IMP (PMID:27780851) BHF-UCL PMID:27780851 NCBI chr 2:85,753,786...85,791,383
Ensembl chr 2:85,751,344...85,791,383
JBrowse link
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 involved_in IDA (PMID:25147342) ARUK-UCL PMID:25147342 NCBI chr 1:203,626,832...203,744,081
Ensembl chr 1:203,626,787...203,744,081
JBrowse link
G AURKA aurora kinase A involved_in IMP (PMID:28218735) UniProt PMID:28218735 NCBI chr20:56,369,390...56,392,308
Ensembl chr20:56,369,389...56,392,337
JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3804621|PMID:18076571) MGI
Ensembl
PMID:18076571 GO_REF:0000107 MGI:3804621 NCBI chr16:287,440...355,226
Ensembl chr16:287,440...352,723
JBrowse link
G BAK1 BCL2 antagonist/killer 1 involved_in IEA
ISO
p16, cyclin D1, COX 2 Ensembl
RGD
PMID:18349538 GO_REF:0000107 RGD:2316126 NCBI chr 6:33,572,552...33,580,296
Ensembl chr 6:33,572,547...33,580,293
JBrowse link
G BBS2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO (MGI:3794515|PMID:18317593), (MGI:3836843|PMID:19150989) MGI PMID:18317593 PMID:19150989 MGI:3794515 MGI:3836843 NCBI chr16:56,470,403...56,520,095
Ensembl chr16:56,465,640...56,582,667
JBrowse link
G BBS4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3794515|PMID:18317593), (MGI:3836843|PMID:19150989) MGI
Ensembl
PMID:18317593 PMID:19150989 GO_REF:0000107 MGI:3794515 MGI:3836843 NCBI chr15:72,686,204...72,738,476
Ensembl chr15:72,686,179...72,738,475
JBrowse link
G BCL11A BAF chromatin remodeling complex subunit BCL11A acts_upstream_of_or_within ISO (MGI:4355757|PMID:19657335) MGI PMID:19657335 MGI:4355757 NCBI chr 2:60,450,520...60,553,654
Ensembl chr 2:60,450,520...60,554,467
JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
IDA
ISO
(PMID:28124060)
(MGI:3512872|PMID:15322112)
BHF-UCL
MGI
PMID:15322112 PMID:28124060 MGI:3512872 NCBI chr20:6,767,686...6,780,246
Ensembl chr20:6,767,686...6,780,246
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IDA
ISO
(PMID:28124060)
(MGI:2135612|PMID:11493558)
BHF-UCL
MGI
PMID:11493558 PMID:28124060 MGI:2135612 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISS BHF-UCL GO_REF:0000024 NCBI chr10:86,755,786...86,927,969
Ensembl chr10:86,756,601...86,932,825
JBrowse link
G BRIP1 BRCA1 interacting helicase 1 involved_in IEA
ISO
Ensembl
RGD
PMID:12511571 GO_REF:0000107 RGD:11251702 NCBI chr17:61,679,139...61,864,120
Ensembl chr17:61,679,139...61,863,559
JBrowse link
G C1QTNF3 C1q and TNF related 3 involved_in IDA (PMID:20952387) UniProt PMID:20952387 NCBI chr 5:34,017,858...34,244,724
Ensembl chr 5:34,017,858...34,043,213
JBrowse link
G CCDC3 coiled-coil domain containing 3 involved_in
acts_upstream_of_or_within
IBA
ISO
IDA
(PMID:21873635)
(MGI:6108413|PMID:28827783)
(PMID:28827783)
GO_Central
MGI
PMID:21873635 PMID:28827783 MGI:6108413 NCBI chr10:12,896,625...13,099,989
Ensembl chr10:12,896,625...13,099,652
JBrowse link
G CCL3 C-C motif chemokine ligand 3 involved_in IDA (PMID:21403648) UniProt PMID:21403648 NCBI chr17:36,088,256...36,090,143
Ensembl chr17:36,088,256...36,090,169
JBrowse link
G CCN2 cellular communication network factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4413658|PMID:18597638) Ensembl
MGI
PMID:18597638 GO_REF:0000107 MGI:4413658 NCBI chr 6:131,948,176...131,951,372
Ensembl chr 6:131,948,176...131,951,372
JBrowse link
G CCNB1 cyclin B1 ISO c-mos RGD PMID:15291744 RGD:1578405 NCBI chr 5:69,167,150...69,178,245
Ensembl chr 5:69,167,135...69,178,245
JBrowse link
G CCR1 C-C motif chemokine receptor 1 involved_in IMP (PMID:21403648) UniProt PMID:21403648 NCBI chr 3:46,201,711...46,208,313
Ensembl chr 3:46,201,711...46,208,313
JBrowse link
G CD28 CD28 molecule involved_in IMP (PMID:23817958) UniProt PMID:23817958 NCBI chr 2:203,706,509...203,739,756
Ensembl chr 2:203,706,475...203,738,912
JBrowse link
G CD34 CD34 molecule involved_in IMP (PMID:15969628) UniProt PMID:15969628 NCBI chr 1:207,880,972...207,911,125
Ensembl chr 1:207,880,972...207,911,402
JBrowse link
G CD36 CD36 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:80,602,207...80,679,277
Ensembl chr 7:80,369,575...80,679,277
JBrowse link
G CD3E CD3e molecule involved_in IMP (PMID:23817958) UniProt PMID:23817958 NCBI chr11:118,304,730...118,316,173
Ensembl chr11:118,304,730...118,316,175
JBrowse link
G CD46 CD46 molecule involved_in IDA (PMID:23086448) UniProt PMID:23086448 NCBI chr 1:207,752,038...207,795,516
Ensembl chr 1:207,752,054...207,795,513
JBrowse link
G CDK1 cyclin dependent kinase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
PMID:28350193 ARUK-UCL
Ensembl
PMID:28350193 GO_REF:0000107 RGD:40902962 NCBI chr10:60,778,331...60,794,852
Ensembl chr10:60,778,331...60,794,852
JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3617096|PMID:11981756) Ensembl
MGI
PMID:11981756 GO_REF:0000107 MGI:3617096 NCBI chr 6:36,676,463...36,687,332
Ensembl chr 6:36,676,460...36,687,337
JBrowse link
G CELF1 CUGBP Elav-like family member 1 acts_upstream_of_or_within IMP (PMID:27230130) ARUK-UCL PMID:27230130 NCBI chr11:47,465,937...47,565,539
Ensembl chr11:47,465,933...47,565,569
JBrowse link
G CHD4 chromodomain helicase DNA binding protein 4 involved_in IGI (PMID:33301730) UniProt PMID:33301730 NCBI chr12:6,570,082...6,607,379
Ensembl chr12:6,570,082...6,614,524
JBrowse link
G CHMP1A charged multivesicular body protein 1A acts_upstream_of_or_within IDA (PMID:11559747) UniProt PMID:11559747 NCBI chr16:89,644,435...89,657,708
Ensembl chr16:89,640,816...89,657,738
JBrowse link
G CILP cartilage intermediate layer protein involved_in IDA (PMID:29167509) BHF-UCL PMID:29167509 NCBI chr15:65,194,760...65,213,142
Ensembl chr15:65,194,760...65,211,473
JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in IDA (PMID:15051727) UniProt PMID:15051727 NCBI chr 6:139,371,807...139,374,648
Ensembl chr 6:139,371,807...139,374,648
JBrowse link
G CLDN19 claudin 19 involved_in IMP (PMID:27593915) ARUK-UCL PMID:27593915 NCBI chr 1:42,733,093...42,740,236
Ensembl chr 1:42,733,093...42,740,254
JBrowse link
G CLDN3 claudin 3 involved_in IMP (PMID:27593915) ARUK-UCL PMID:27593915 NCBI chr 7:73,768,997...73,770,270
Ensembl chr 7:73,768,997...73,770,270
JBrowse link
G CLDN5 claudin 5 involved_in IMP
ISS
(PMID:25323998) ARUK-UCL PMID:25323998 GO_REF:0000024 NCBI chr22:19,523,024...19,525,337
Ensembl chr22:19,523,024...19,527,545
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IMP (PMID:25038453) BHF-UCL PMID:25038453 NCBI chr 8:17,221,981...17,246,857
Ensembl chr 8:17,224,966...17,246,878
JBrowse link
G CNPY2 canopy FGF signaling regulator 2 acts_upstream_of ISS (PMID:22378787) BHF-UCL PMID:22378787 NCBI chr12:56,309,844...56,316,346
Ensembl chr12:56,309,842...56,316,119
JBrowse link
G CPNE1 copine 1 involved_in IMP (PMID:18212740) UniProt PMID:18212740 NCBI chr20:35,626,044...35,664,900
Ensembl chr20:35,626,031...35,664,956
JBrowse link
G CREB1 cAMP responsive element binding protein 1 ISO RGD PMID:21816899 RGD:10059418 NCBI chr 2:207,529,943...207,605,988
Ensembl chr 2:207,529,737...207,605,988
JBrowse link
G CREB3L1 cAMP responsive element binding protein 3 like 1 involved_in IDA (PMID:27121396) BHF-UCL PMID:27121396 NCBI chr11:46,277,661...46,321,409
Ensembl chr11:46,277,662...46,321,409
JBrowse link
G CRH corticotropin releasing hormone ISO Lhb RGD PMID:20663987 RGD:5508201 NCBI chr 8:66,176,376...66,178,464
Ensembl chr 8:66,176,376...66,178,464
JBrowse link
G CRHR2 corticotropin releasing hormone receptor 2 ISO Lhb, Fshb RGD PMID:19193717 RGD:2317015 NCBI chr 7:30,649,406...30,700,103
Ensembl chr 7:30,651,942...30,700,129
JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein involved_in IMP (PMID:23959425) ARUK-UCL PMID:23959425 NCBI chr22:20,917,407...20,953,747
Ensembl chr22:20,917,407...20,953,747
JBrowse link
G CRYAA crystallin alpha A acts_upstream_of_or_within ISO (MGI:3758141|PMID:17893660) MGI PMID:17893660 MGI:3758141 NCBI chr21:43,169,008...43,172,810
Ensembl chr21:43,169,008...43,172,805
JBrowse link
G CRYAB crystallin alpha B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3758141|PMID:17893660) Ensembl
MGI
PMID:17893660 GO_REF:0000107 MGI:3758141 NCBI chr11:111,908,564...111,923,740
Ensembl chr11:111,908,564...111,923,722
JBrowse link
G CTCF CCCTC-binding factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:67,562,526...67,639,185
Ensembl chr16:67,562,467...67,639,177
JBrowse link
G CTNNB1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 acts_upstream_of_or_within IDA (PMID:29048659) ARUK-UCL PMID:29048659 NCBI chr 4:73,740,569...73,743,716
Ensembl chr 4:73,740,541...73,743,716
JBrowse link
G DAXX death domain associated protein involved_in IDA (PMID:10698492) UniProt PMID:10698492 NCBI chr 6:33,318,558...33,322,959
Ensembl chr 6:33,318,558...33,323,016
JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IMP (PMID:23675531) ParkinsonsUK-UCL PMID:23675531 NCBI chr20:3,190,350...3,204,682
Ensembl chr20:3,190,350...3,204,685
JBrowse link
G DGKQ diacylglycerol kinase theta involved_in IMP (PMID:24369117) ParkinsonsUK-UCL PMID:24369117 NCBI chr 4:958,887...973,569
Ensembl chr 4:958,887...986,895
JBrowse link
G DICER1 dicer 1, ribonuclease III involved_in
acts_upstream_of
IMP (PMID:23322395)
(PMID:22105995)
ARUK-UCL PMID:22105995 PMID:23322395 NCBI chr14:95,086,228...95,158,263
Ensembl chr14:95,086,228...95,158,010
JBrowse link
G DIP2A disco interacting protein 2 homolog A involved_in IDA (PMID:20860622) UniProt PMID:20860622 NCBI chr21:46,458,891...46,571,226
Ensembl chr21:46,458,891...46,570,015
JBrowse link
G DLL4 delta like canonical Notch ligand 4 involved_in IDA (PMID:23388056) UniProt PMID:23388056 NCBI chr15:40,929,340...40,939,073
Ensembl chr15:40,929,340...40,939,073
JBrowse link
G DNMT1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within
IMP
ISO
(PMID:27021683)
(MGI:6270117|PMID:29117290)
BHF-UCL
MGI
PMID:27021683 PMID:29117290 MGI:6270117 NCBI chr19:10,133,346...10,194,953
Ensembl chr19:10,133,342...10,231,286
JBrowse link
G DYSF dysferlin acts_upstream_of_or_within ISO (MGI:3775586|PMID:18276788) MGI PMID:18276788 MGI:3775586 NCBI chr 2:71,453,154...71,686,763
Ensembl chr 2:71,453,561...71,686,763
JBrowse link
G EDN1 endothelin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:12,256,463...12,297,194
Ensembl chr 6:12,290,361...12,297,194
JBrowse link
G EIF2AK3 eukaryotic translation initiation factor 2 alpha kinase 3 acts_upstream_of_or_within ISO (MGI:5478659|PMID:23152784) MGI PMID:23152784 MGI:5478659 NCBI chr 2:88,556,741...88,627,464
Ensembl chr 2:88,556,741...88,691,518
JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 ISO Arc RGD PMID:17632064 RGD:10044262 NCBI chr17:80,134,369...80,147,128
Ensembl chr17:80,134,369...80,147,151
JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 2:27,078,615...27,086,403
Ensembl chr 2:27,078,615...27,086,403
JBrowse link
G ENG endoglin involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 9:127,815,012...127,854,773
Ensembl chr 9:127,815,013...127,854,658
JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3826692|PMID:18824542) Ensembl
MGI
PMID:18824542 GO_REF:0000107 MGI:3826692 NCBI chr 6:145,382,540...145,736,023
Ensembl chr 6:145,382,535...145,736,023
JBrowse link
G ERP29 endoplasmic reticulum protein 29 involved_in IDA (PMID:22064321) ParkinsonsUK-UCL PMID:22064321 NCBI chr12:112,013,340...112,023,449
Ensembl chr12:112,013,348...112,023,449
JBrowse link
G ESR1 estrogen receptor 1 involved_in IDA (PMID:21695196) UniProt PMID:21695196 NCBI chr 6:151,654,148...152,129,619
Ensembl chr 6:151,656,691...152,129,619
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO Cdkn1c, also known as p57kip2, cyclin-dependent kinase inhibitor 1c RGD PMID:22821416 RGD:7242953 NCBI chr 7:148,807,374...148,884,344
Ensembl chr 7:148,807,257...148,884,321
JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IGI
IMP
(PMID:23823476) BHF-UCL PMID:23823476 NCBI chr 4:152,320,544...152,536,873
Ensembl chr 4:152,320,544...152,536,092
JBrowse link
G FERMT1 FERM domain containing kindlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:6,074,845...6,123,609
Ensembl chr20:6,074,845...6,123,030
JBrowse link
G FGF19 fibroblast growth factor 19 involved_in IDA (PMID:19085950) UniProt PMID:19085950 NCBI chr11:69,698,238...69,704,022
Ensembl chr11:69,698,238...69,704,022
JBrowse link
G FGF2 fibroblast growth factor 2 acts_upstream_of NAS (PMID:24463821) BHF-UCL PMID:24463821 NCBI chr 4:122,826,708...122,898,236
Ensembl chr 4:122,826,708...122,898,236
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (MGI:3775898|PMID:18191119)
(MGI:5548021|PMID:24259513)
MGI PMID:18191119 PMID:24259513 MGI:3775898 MGI:5548021 NCBI chr 8:38,411,143...38,468,635
Ensembl chr 8:38,400,215...38,468,834
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (MGI:4437389|PMID:20053668) MGI PMID:20053668 MGI:4437389 NCBI chr 4:1,793,293...1,808,872
Ensembl chr 4:1,793,293...1,808,872
JBrowse link
G FGFR4 fibroblast growth factor receptor 4 acts_upstream_of_or_within ISO (MGI:5548021|PMID:24259513) MGI PMID:24259513 MGI:5548021 NCBI chr 5:177,086,915...177,098,144
Ensembl chr 5:177,086,905...177,098,144
JBrowse link
G FLCN folliculin involved_in ISS UniProt GO_REF:0000024 NCBI chr17:17,206,946...17,237,188
Ensembl chr17:17,212,212...17,237,188
JBrowse link
G FLOT2 flotillin 2 involved_in IMP (PMID:24612608) UniProt PMID:24612608 NCBI chr17:28,879,339...28,897,733
Ensembl chr17:28,879,335...28,897,733
JBrowse link
G FMR1 FMRP translational regulator 1 involved_in ISO (MGI:5473740|PMID:23235829) RGD
UniProt
PMID:23235829 PMID:24338128 MGI:5473740 RGD:11667958 NCBI chr  X:147,911,919...147,951,125
Ensembl chr  X:147,911,919...147,951,125
JBrowse link
G FOXO1 forkhead box O1 involved_in ISO (PMID:24280217) AgBase PMID:24280217 NCBI chr13:40,555,667...40,666,641
Ensembl chr13:40,555,667...40,666,641
JBrowse link
G FOXP1 forkhead box P1 involved_in IDA (PMID:30111844) ARUK-UCL PMID:30111844 NCBI chr 3:70,954,708...71,583,978
Ensembl chr 3:70,954,708...71,583,989
JBrowse link
G FOXP3 forkhead box P3 acts_upstream_of_or_within ISO (MGI:5569680|PMID:24501220) MGI PMID:24501220 MGI:5569680 NCBI chr  X:49,250,436...49,264,932
Ensembl chr  X:49,250,438...49,270,477
JBrowse link
G FYN FYN proto-oncogene, Src family tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:111,660,332...111,873,452
Ensembl chr 6:111,660,332...111,873,452
JBrowse link
G GAS2L1 growth arrest specific 2 like 1 involved_in IDA (PMID:19375645) UniProt PMID:19375645 NCBI chr22:29,306,650...29,312,787
Ensembl chr22:29,306,582...29,312,785
JBrowse link
G GATA2 GATA binding protein 2 involved_in IMP (PMID:27780851) BHF-UCL PMID:27780851 NCBI chr 3:128,479,422...128,493,201
Ensembl chr 3:128,479,427...128,493,201
JBrowse link
G GATA3 GATA binding protein 3 acts_upstream_of_or_within ISO (MGI:3708031|PMID:17357106) MGI PMID:17357106 MGI:3708031 NCBI chr10:8,045,420...8,075,198
Ensembl chr10:8,045,378...8,075,198
JBrowse link
G GATA4 GATA binding protein 4 involved_in ISO (MGI:5780531|PMID:25590961) BHF-UCL PMID:25590961 MGI:5780531 NCBI chr 8:11,676,935...11,760,002
Ensembl chr 8:11,676,959...11,760,002
JBrowse link
G GATA5 GATA binding protein 5 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr20:62,463,497...62,475,995
Ensembl chr20:62,463,497...62,475,995
JBrowse link
G GGNBP2 gametogenetin binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5779255|PMID:26764350) Ensembl
MGI
PMID:26764350 GO_REF:0000107 MGI:5779255 NCBI chr17:36,544,913...36,589,848
Ensembl chr17:36,544,912...36,589,848
JBrowse link
G GJA1 gap junction protein alpha 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3849919|PMID:19439426) MGI
Ensembl
PMID:19439426 GO_REF:0000107 MGI:3849919 NCBI chr 6:121,435,646...121,449,727
Ensembl chr 6:121,435,595...121,449,727
JBrowse link
G GPER1 G protein-coupled estrogen receptor 1 involved_in IMP
ISS
(PMID:23840305) AgBase
UniProt
PMID:23840305 GO_REF:0000024 NCBI chr 7:1,087,118...1,093,810
Ensembl chr 7:1,082,208...1,093,815
JBrowse link
G GSK3B glycogen synthase kinase 3 beta acts_upstream_of IMP (PMID:27050373), (PMID:28122350) ARUK-UCL PMID:27050373 PMID:28122350 NCBI chr 3:119,821,321...120,095,823
Ensembl chr 3:119,821,321...120,094,994
JBrowse link
G H19 H19 imprinted maternally expressed transcript acts_upstream_of_or_within ISO (MGI:4365869|PMID:19762426) MGI PMID:19762426 MGI:4365869 NCBI chr11:1,995,176...2,001,466
Ensembl chr11:1,995,176...2,001,470
JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 involved_in IMP (PMID:24161931) BHF-UCL PMID:24161931 NCBI chr 4:173,526,091...173,530,229
Ensembl chr 4:173,524,969...173,530,229
JBrowse link
G HAVCR2 hepatitis A virus cellular receptor 2 involved_in IMP (PMID:25578313) UniProt PMID:25578313 NCBI chr 5:157,085,832...157,109,044
Ensembl chr 5:157,085,832...157,142,869
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IMP (PMID:16581785) CACAO PMID:16581785 NCBI chr 1:32,292,083...32,333,628
Ensembl chr 1:32,292,083...32,333,635
JBrowse link
G HDAC5 histone deacetylase 5 acts_upstream_of_or_within ISO (MGI:5569711|PMID:23926128) MGI PMID:23926128 MGI:5569711 NCBI chr17:44,076,753...44,123,651
Ensembl chr17:44,076,746...44,123,702
JBrowse link
G HDAC8 histone deacetylase 8 ISO Stx1a RGD PMID:28559304 RGD:13208603 NCBI chr  X:72,329,516...72,573,099
Ensembl chr  X:72,329,516...72,573,101
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in ISO
IEA
RGD
Ensembl
PMID:19670267 GO_REF:0000107 RGD:9685170 NCBI chr 3:194,136,148...194,138,732
Ensembl chr 3:194,136,148...194,138,732
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 involved_in
acts_upstream_of_or_within
ISO (MGI:3604167|PMID:16025100)
(MGI:5427763|PMID:22615585)
BHF-UCL
MGI
PMID:16025100 PMID:22615585 MGI:3604167 MGI:5427763 NCBI chr 8:79,764,010...79,767,767
Ensembl chr 8:79,762,371...79,767,857
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:4454633|PMID:20382855)
(MGI:5427763|PMID:22615585)
UniProt
MGI
PMID:20382855 PMID:22615585 GO_REF:0000024 MGI:4454633 MGI:5427763 NCBI chr 6:125,747,639...125,762,243
Ensembl chr 6:125,747,664...125,761,269
JBrowse link
G HEYL hes related family bHLH transcription factor with YRPW motif like involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5427763|PMID:22615585) Ensembl
MGI
PMID:22615585 GO_REF:0000107 MGI:5427763 NCBI chr 1:39,623,435...39,639,643
Ensembl chr 1:39,623,435...39,639,643
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in IMP (PMID:26879375) BHF-UCL PMID:26879375 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G HINFP histone H4 transcription factor involved_in IMP (PMID:15541338), (PMID:17974976) UniProt PMID:15541338 PMID:17974976 NCBI chr11:119,121,577...119,136,059
Ensembl chr11:119,121,580...119,136,059
JBrowse link
G HMGB2 high mobility group box 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:173,331,376...173,334,358
Ensembl chr 4:173,331,376...173,334,432
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D ISO Mmp9 RGD PMID:16683234 RGD:10042976 NCBI chr 4:82,352,498...82,373,991
Ensembl chr 4:82,352,498...82,374,503
JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO Orm1 RGD PMID:9553145 RGD:2303817 NCBI chr 9:83,968,083...83,980,630
Ensembl chr 9:83,968,083...83,980,616
JBrowse link
G HRAS HRas proto-oncogene, GTPase involved_in IDA (PMID:23027131) BHF-UCL PMID:23027131 NCBI chr11:532,242...535,576
Ensembl chr11:532,242...537,321
JBrowse link
G HSF1 heat shock transcription factor 1 involved_in ISO
IEA
Igf2r RGD
Ensembl
PMID:24786827 GO_REF:0000107 RGD:10402547 NCBI chr 8:144,291,603...144,314,720
Ensembl chr 8:144,291,591...144,314,720
JBrowse link
G HSPA4 heat shock protein family A (Hsp70) member 4 ISO Tnf, Il1b, Icam1, Nos2 RGD PMID:17473852 RGD:5688754 NCBI chr 5:133,052,013...133,106,449
Ensembl chr 5:133,052,013...133,106,449
JBrowse link
G ID1 inhibitor of DNA binding 1, HLH protein acts_upstream_of_or_within ISO (MGI:4453908|PMID:20231428) MGI PMID:20231428 MGI:4453908 NCBI chr20:31,605,289...31,606,510
Ensembl chr20:31,605,283...31,606,515
JBrowse link
G ID2 inhibitor of DNA binding 2 involved_in ISS
ISO
p21 UniProt
RGD
PMID:11706002 GO_REF:0000024 RGD:619536 NCBI chr 2:8,682,056...8,684,461
Ensembl chr 2:8,678,845...8,684,461
JBrowse link
G ID3 inhibitor of DNA binding 3, HLH protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5512805|PMID:23523789) Ensembl
MGI
PMID:23523789 GO_REF:0000107 MGI:5512805 NCBI chr 1:23,557,926...23,559,501
Ensembl chr 1:23,557,926...23,559,501
JBrowse link
G IFNA2 interferon alpha 2 involved_in IDA (PMID:20554961) UniProt PMID:20554961 NCBI chr 9:21,384,255...21,385,398
Ensembl chr 9:21,384,255...21,385,398
JBrowse link
G IFNG interferon gamma involved_in IDA
ISS
(PMID:23817958) UniProt
ARUK-UCL
PMID:23817958 GO_REF:0000024 NCBI chr12:68,154,768...68,159,740
Ensembl chr12:68,154,768...68,159,740
JBrowse link
G IGF1 insulin like growth factor 1 involved_in IDA (PMID:29167509) BHF-UCL PMID:29167509 NCBI chr12:102,395,860...102,481,839
Ensembl chr12:102,395,874...102,481,744
JBrowse link
G IL1B interleukin 1 beta ISO Nr2e1 RGD PMID:23168994 RGD:7175538 NCBI chr 2:112,829,751...112,836,843
Ensembl chr 2:112,829,751...112,836,816
JBrowse link
G INPPL1 inositol polyphosphate phosphatase like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3528799|PMID:15654325) Ensembl
MGI
PMID:15654325 GO_REF:0000107 MGI:3528799 NCBI chr11:72,223,861...72,239,147
Ensembl chr11:72,223,701...72,239,147
JBrowse link
G INS insulin acts_upstream_of IDA (PMID:31501273) ARUK-UCL PMID:31501273 NCBI chr11:2,159,779...2,161,209
Ensembl chr11:2,159,779...2,161,221
JBrowse link
G INSR insulin receptor ISO SOCS3 levels in hypothalamus RGD PMID:17585961 RGD:2290473 NCBI chr19:7,112,257...7,294,414
Ensembl chr19:7,112,255...7,294,414
JBrowse link
G IQGAP3 IQ motif containing GTPase activating protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3835718|PMID:18604197) Ensembl
MGI
PMID:18604197 GO_REF:0000107 MGI:3835718 NCBI chr 1:156,525,405...156,572,605
Ensembl chr 1:156,525,405...156,572,604
JBrowse link
G ITGB8 integrin subunit beta 8 involved_in IMP (PMID:24312400) UniProt PMID:24312400 NCBI chr 7:20,329,819...20,415,754
Ensembl chr 7:20,330,702...20,415,754
JBrowse link
G JMJD4 jumonji domain containing 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:227,731,191...227,735,499
Ensembl chr 1:227,730,425...227,735,411
JBrowse link
G KANTR KDM5C adjacent transcript acts_upstream_of_or_within ISO (MGI:5648760|PMID:26034286) MGI PMID:26034286 MGI:5648760 NCBI chr  X:53,094,157...53,148,008
Ensembl chr  X:53,094,145...53,170,914
JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3054495|PMID:15340049) MGI
Ensembl
PMID:15340049 GO_REF:0000107 MGI:3054495 NCBI chr11:2,445,008...2,849,110
Ensembl chr11:2,444,684...2,849,105
JBrowse link
G KDM2A lysine demethylase 2A acts_upstream_of_or_within ISO (MGI:5615026|PMID:25463925) MGI PMID:25463925 MGI:5615026 NCBI chr11:67,119,263...67,258,082
Ensembl chr11:67,119,263...67,258,082
JBrowse link
G KDM4A lysine demethylase 4A involved_in IMP (PMID:25660547) ParkinsonsUK-UCL PMID:25660547 NCBI chr 1:43,650,149...43,705,518
Ensembl chr 1:43,650,149...43,705,518
JBrowse link
G KDR kinase insert domain receptor involved_in IDA (PMID:26879375) BHF-UCL PMID:26879375 NCBI chr 4:55,078,481...55,125,595
Ensembl chr 4:55,078,481...55,125,595
JBrowse link
G KEAP1 kelch like ECH associated protein 1 ISO NQO1 RGD PMID:11439354 PMID:20026152 RGD:6902900 RGD:727319 NCBI chr19:10,486,125...10,503,356
Ensembl chr19:10,486,125...10,503,558
JBrowse link
G KLF4 Kruppel like factor 4 involved_in IGI (PMID:22267480) BHF-UCL PMID:22267480 NCBI chr 9:107,484,852...107,489,769
Ensembl chr 9:107,484,852...107,490,482
JBrowse link
G KPNA7 karyopherin subunit alpha 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5913752|PMID:20699224) MGI
Ensembl
PMID:20699224 GO_REF:0000107 MGI:5913752 NCBI chr 7:99,145,467...99,219,417
Ensembl chr 7:99,173,572...99,250,075
JBrowse link
G L3MBTL2 L3MBTL histone methyl-lysine binding protein 2 acts_upstream_of_or_within ISO (MGI:5700289|PMID:22770845) MGI PMID:22770845 MGI:5700289 NCBI chr22:41,205,192...41,231,271
Ensembl chr22:41,205,282...41,231,271
JBrowse link
G LDLR low density lipoprotein receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:11,089,432...11,133,820
Ensembl chr19:11,089,462...11,133,820
JBrowse link
G LGALS9 galectin 9 involved_in IMP
IDA
(PMID:25578313)
(PMID:23408620)
UniProt PMID:23408620 PMID:25578313 NCBI chr17:27,631,172...27,649,560
Ensembl chr17:27,629,798...27,649,560
JBrowse link
G LGMN legumain involved_in IMP (PMID:21237226) ARUK-UCL PMID:21237226 NCBI chr14:92,703,809...92,748,627
Ensembl chr14:92,703,807...92,748,679
JBrowse link
G LRP1 LDL receptor related protein 1 involved_in ISS (PMID:31023188) BHF-UCL PMID:31023188 NCBI chr12:57,128,401...57,213,377
Ensembl chr12:57,128,483...57,213,361
JBrowse link
G LRP3 LDL receptor related protein 3 involved_in IMP (PMID:28340487) ARUK-UCL PMID:28340487 NCBI chr19:33,194,330...33,208,864
Ensembl chr19:33,177,603...33,208,864
JBrowse link
G MAEL maelstrom spermatogenic transposon silencer acts_upstream_of_or_within ISO (MGI:3813746|PMID:18694567) MGI PMID:18694567 MGI:3813746 NCBI chr 1:166,921,121...167,022,214
Ensembl chr 1:166,975,582...167,022,214
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 involved_in ISO PMID:28947594 BHF-UCL PMID:28947594 RGD:13524616 NCBI chr15:66,386,912...66,491,544
Ensembl chr15:66,386,837...66,491,544
JBrowse link
G MAP2K2 mitogen-activated protein kinase kinase 2 involved_in ISO PMID:28947594 BHF-UCL PMID:28947594 RGD:13524616 NCBI chr19:4,090,321...4,124,184
Ensembl chr19:4,090,321...4,124,122
JBrowse link
G MAPT microtubule associated protein tau involved_in IMP (PMID:23164821) ARUK-UCL PMID:23164821 NCBI chr17:45,894,538...46,028,334
Ensembl chr17:45,894,527...46,028,334
JBrowse link
G MARK1 microtubule affinity regulating kinase 1 acts_upstream_of IDA (PMID:31281935) ARUK-UCL PMID:31281935 NCBI chr 1:220,528,136...220,664,461
Ensembl chr 1:220,528,136...220,664,461
JBrowse link
G MAX MYC associated factor X involved_in ISO
IEA
RGD
Ensembl
PMID:7791753 GO_REF:0000107 RGD:2316831 NCBI chr14:65,006,101...65,102,695
Ensembl chr14:65,006,174...65,102,695
JBrowse link
G MBD1 methyl-CpG binding domain protein 1 ISO Gfap RGD PMID:16881068 RGD:9588644 NCBI chr18:50,266,882...50,281,767
Ensembl chr18:50,266,882...50,281,774
JBrowse link
G MDM2 MDM2 proto-oncogene ISO p53 RGD PMID:19850968 RGD:2317361 NCBI chr12:68,808,149...68,850,686
Ensembl chr12:68,808,177...68,845,544
JBrowse link
G MECP2 methyl-CpG binding protein 2 involved_in IDA
ISO
(PMID:23960241)
Bdnf
BHF-UCL
RGD
PMID:19217433 PMID:23960241 RGD:11069822 NCBI chr  X:154,021,573...154,097,717
Ensembl chr  X:154,021,573...154,137,103
JBrowse link
G MEF2C myocyte enhancer factor 2C involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:88,717,117...88,904,105
Ensembl chr 5:88,717,117...88,904,257
JBrowse link
G MET MET proto-oncogene, receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:5529574|PMID:23994610) MGI PMID:23994610 MGI:5529574 NCBI chr 7:116,672,196...116,798,386
Ensembl chr 7:116,672,196...116,798,377
JBrowse link
G MIF macrophage migration inhibitory factor involved_in IDA (PMID:10562313) BHF-UCL PMID:10562313 NCBI chr22:23,894,383...23,895,223
Ensembl chr22:23,894,383...23,895,227
JBrowse link
G MIR1-1 microRNA 1-1 acts_upstream_of_or_within ISO (MGI:5052204|PMID:21690310) MGI PMID:21690310 MGI:5052204 NCBI chr20:62,554,306...62,554,376
Ensembl chr20:62,554,306...62,554,376
JBrowse link
G MIR1-2 microRNA 1-2 acts_upstream_of_or_within ISO (MGI:5052204|PMID:21690310) MGI PMID:21690310 MGI:5052204 NCBI chr18:21,829,004...21,829,088
Ensembl chr18:21,829,004...21,829,088
JBrowse link
G MIR124-1HG MIR124-1 host gene acts_upstream_of_or_within ISO (MGI:5528923|PMID:23946534) MGI PMID:23946534 MGI:5528923 NCBI chr 8:9,900,064...9,903,329
Ensembl chr 8:9,899,871...9,906,678
JBrowse link
G MIR129-2 microRNA 129-2 acts_upstream_of_or_within ISO (MGI:5468417|PMID:22684256) MGI PMID:22684256 MGI:5468417 NCBI chr11:43,581,394...43,581,483
Ensembl chr11:43,581,394...43,581,483
JBrowse link
G MIR133A1 microRNA 133a-1 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) MGI PMID:21628588 MGI:5013854 NCBI chr18:21,825,698...21,825,785
Ensembl chr18:21,825,698...21,825,785
JBrowse link
G MIR133A2 microRNA 133a-2 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) MGI PMID:21628588 MGI:5013854 NCBI chr20:62,564,912...62,565,013
Ensembl chr20:62,564,912...62,565,013
JBrowse link
G MIR134 microRNA 134 acts_upstream_of_or_within ISO (MGI:3822253|PMID:18806776) MGI PMID:18806776 MGI:3822253 NCBI chr14:101,054,687...101,054,759
Ensembl chr14:101,054,687...101,054,759
JBrowse link
G MIR135A1 microRNA 135a-1 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) MGI PMID:21628588 MGI:5013854 NCBI chr 3:52,294,219...52,294,308
Ensembl chr 3:52,294,219...52,294,308
JBrowse link
G MIR135A2 microRNA 135a-2 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) MGI PMID:21628588 MGI:5013854 NCBI chr12:97,563,812...97,563,911
Ensembl chr12:97,563,812...97,563,911
JBrowse link
G MIR137 microRNA 137 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) MGI PMID:21628588 MGI:5013854 NCBI chr 1:98,046,070...98,046,171
Ensembl chr 1:98,046,070...98,046,171
JBrowse link
G MIR140 microRNA 140 acts_upstream_of_or_within ISO (MGI:5574156|PMID:24349493) MGI PMID:24349493 MGI:5574156 NCBI chr16:69,933,081...69,933,180
Ensembl chr16:69,933,081...69,933,180
JBrowse link
G MIR154 microRNA 154 acts_upstream_of_or_within ISO (MGI:5705446|PMID:25959411) MGI PMID:25959411 MGI:5705446 NCBI chr14:101,059,755...101,059,838
Ensembl chr14:101,059,755...101,059,838
JBrowse link
G MIR155 microRNA 155 acts_upstream_of_or_within ISO (MGI:5426073|PMID:22517757) MGI PMID:22517757 MGI:5426073 NCBI chr21:25,573,980...25,574,044
Ensembl chr21:25,573,980...25,574,044
JBrowse link
G MIR15A microRNA 15a acts_upstream_of_or_within ISO (MGI:3844748|PMID:19416898) MGI PMID:19416898 MGI:3844748 NCBI chr13:50,049,119...50,049,201
Ensembl chr13:50,049,119...50,049,201
JBrowse link
G MIR181B1 microRNA 181b-1 acts_upstream_of_or_within ISO (MGI:3817382|PMID:18762567) MGI PMID:18762567 MGI:3817382 NCBI chr 1:198,858,873...198,858,982
Ensembl chr 1:198,858,873...198,858,982
JBrowse link
G MIR181B2 microRNA 181b-2 acts_upstream_of_or_within ISO (MGI:3817382|PMID:18762567) MGI PMID:18762567 MGI:3817382 NCBI chr 9:124,693,710...124,693,798
Ensembl chr 9:124,693,710...124,693,798
JBrowse link
G MIR186 microRNA 186 acts_upstream_of_or_within ISO (MGI:5771621|PMID:26710318) MGI PMID:26710318 MGI:5771621 NCBI chr 1:71,067,631...71,067,716
Ensembl chr 1:71,067,631...71,067,716
JBrowse link
G MIR18A microRNA 18a acts_upstream_of_or_within ISO (MGI:5461254|PMID:23152446) MGI PMID:23152446 MGI:5461254 NCBI chr13:91,350,751...91,350,821
Ensembl chr13:91,350,751...91,350,821
JBrowse link
G MIR196A1 microRNA 196a-1 acts_upstream_of_or_within ISO (MGI:3042528|PMID:15105502) MGI PMID:15105502 MGI:3042528 NCBI chr17:48,632,490...48,632,559
Ensembl chr17:48,632,490...48,632,559
JBrowse link
G MIR196A2 microRNA 196a-2 acts_upstream_of_or_within ISO (MGI:3042528|PMID:15105502) MGI PMID:15105502 MGI:3042528 NCBI chr12:53,991,738...53,991,847
Ensembl chr12:53,991,738...53,991,847
JBrowse link
G MIR196B microRNA 196b acts_upstream_of_or_within ISO (MGI:3042528|PMID:15105502) MGI PMID:15105502 MGI:3042528 NCBI chr 7:27,169,480...27,169,563
Ensembl chr 7:27,169,480...27,169,563
JBrowse link
G MIR204 microRNA 204 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) MGI PMID:21628588 MGI:5013854 NCBI chr 9:70,809,975...70,810,084
Ensembl chr 9:70,809,975...70,810,084
JBrowse link
G MIR205 microRNA 205 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) MGI PMID:21628588 MGI:5013854 NCBI chr 1:209,432,133...209,432,242
Ensembl chr 1:209,432,133...209,432,242
JBrowse link
G MIR208B microRNA 208b acts_upstream_of_or_within ISO (MGI:4359539|PMID:19726871) MGI PMID:19726871 MGI:4359539 NCBI chr14:23,417,987...23,418,063
Ensembl chr14:23,417,987...23,418,063
JBrowse link
G MIR21 microRNA 21 acts_upstream_of_or_within ISO (MGI:5693365|PMID:19147652) MGI PMID:19147652 MGI:5693365 NCBI chr17:59,841,266...59,841,337
Ensembl chr17:59,841,266...59,841,337
JBrowse link
G MIR217 microRNA 217 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) MGI PMID:21628588 MGI:5013854 NCBI chr 2:55,982,967...55,983,076
Ensembl chr 2:55,982,967...55,983,076
JBrowse link
G MIR218-1 microRNA 218-1 acts_upstream_of_or_within ISO (MGI:5297649|PMID:20947829) MGI PMID:20947829 MGI:5297649 NCBI chr 4:20,528,275...20,528,384
Ensembl chr 4:20,528,275...20,528,384
JBrowse link
G MIR218-2 microRNA 218-2 acts_upstream_of_or_within ISO (MGI:5297649|PMID:20947829) MGI PMID:20947829 MGI:5297649 NCBI chr 5:168,768,146...168,768,255
Ensembl chr 5:168,768,146...168,768,255
JBrowse link
G MIR219A1 microRNA 219a-1 acts_upstream_of_or_within ISO (MGI:4439416|PMID:20223197) MGI PMID:20223197 MGI:4439416 NCBI chr 6:33,207,835...33,207,944
Ensembl chr 6:33,207,835...33,207,944
JBrowse link
G MIR219A2 microRNA 219a-2 acts_upstream_of_or_within ISO (MGI:4439416|PMID:20223197) MGI PMID:20223197 MGI:4439416 NCBI chr 9:128,392,618...128,392,714
Ensembl chr 9:128,392,618...128,392,714
JBrowse link
G MIR23A microRNA 23a acts_upstream_of_or_within ISO (MGI:5516374|PMID:24101522)
(MGI:5013854|PMID:21628588)
MGI PMID:21628588 PMID:24101522 MGI:5013854 MGI:5516374 NCBI chr19:13,836,587...13,836,659
Ensembl chr19:13,836,587...13,836,659
JBrowse link
G MIR24-1 microRNA 24-1 acts_upstream_of_or_within ISO (MGI:5604962|PMID:24824656) MGI PMID:24824656 MGI:5604962 NCBI chr 9:95,086,021...95,086,088
Ensembl chr 9:95,086,021...95,086,088
JBrowse link
G MIR24-2 microRNA 24-2 acts_upstream_of_or_within ISO (MGI:5604962|PMID:24824656) MGI PMID:24824656 MGI:5604962 NCBI chr19:13,836,287...13,836,359
Ensembl chr19:13,836,287...13,836,359
JBrowse link
G MIR296 microRNA 296 acts_upstream_of_or_within ISO (MGI:3822253|PMID:18806776) MGI PMID:18806776 MGI:3822253 NCBI chr20:58,817,615...58,817,694
Ensembl chr20:58,817,615...58,817,694
JBrowse link
G MIR29A microRNA 29a acts_upstream_of_or_within ISO (MGI:5013521|PMID:21522133) MGI PMID:21522133 MGI:5013521 NCBI chr 7:130,876,747...130,876,810
Ensembl chr 7:130,876,747...130,876,810
JBrowse link
G MIR29B1 microRNA 29b-1 acts_upstream_of_or_within ISO (MGI:5013521|PMID:21522133) MGI PMID:21522133 MGI:5013521 NCBI chr 7:130,877,459...130,877,539
Ensembl chr 7:130,877,459...130,877,539
JBrowse link
G MIR29B2 microRNA 29b-2 acts_upstream_of_or_within ISO (MGI:5013521|PMID:21522133) MGI PMID:21522133 MGI:5013521 NCBI chr 1:207,802,443...207,802,523
Ensembl chr 1:207,802,443...207,802,523
JBrowse link
G MIR29C microRNA 29c acts_upstream_of_or_within ISO (MGI:5013521|PMID:21522133) MGI PMID:21522133 MGI:5013521 NCBI chr 1:207,801,852...207,801,939
Ensembl chr 1:207,801,852...207,801,939
JBrowse link
G MIR301A microRNA 301a acts_upstream_of_or_within ISO (MGI:5426073|PMID:22517757) MGI PMID:22517757 MGI:5426073 NCBI chr17:59,151,136...59,151,221
Ensembl chr17:59,151,136...59,151,221
JBrowse link
G MIR30C1 microRNA 30c-1 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) MGI PMID:21628588 MGI:5013854 NCBI chr 1:40,757,284...40,757,372
Ensembl chr 1:40,757,284...40,757,372
JBrowse link
G MIR30C2 microRNA 30c-2 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) MGI PMID:21628588 MGI:5013854 NCBI chr 6:71,376,960...71,377,031
Ensembl chr 6:71,376,960...71,377,031
JBrowse link
G MIR320A microRNA 320a acts_upstream_of_or_within ISO (MGI:5447874|PMID:22925886) MGI PMID:22925886 MGI:5447874 NCBI chr 8:22,244,966...22,245,037
Ensembl chr 8:22,244,962...22,245,043
JBrowse link
G MIR330 microRNA 330 acts_upstream_of_or_within ISO (MGI:5305371|PMID:21993888) MGI PMID:21993888 MGI:5305371 NCBI chr19:45,638,994...45,639,087
Ensembl chr19:45,638,994...45,639,087
JBrowse link
G MIR338 microRNA 338 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) MGI PMID:21628588 MGI:5013854 NCBI chr17:81,125,883...81,125,949
Ensembl chr17:81,125,883...81,125,949
JBrowse link
G MIR34A microRNA 34a acts_upstream_of_or_within ISO (MGI:4440730|PMID:19895913) MGI PMID:19895913 MGI:4440730 NCBI chr 1:9,151,668...9,151,777
Ensembl chr 1:9,151,668...9,151,777
JBrowse link
G MIR34B microRNA 34b acts_upstream_of_or_within ISO (MGI:5578416|PMID:24982181)
(MGI:4440730|PMID:19895913)
MGI PMID:19895913 PMID:24982181 MGI:4440730 MGI:5578416 NCBI chr11:111,512,938...111,513,021
Ensembl chr11:111,512,938...111,513,021
JBrowse link
G MIR34C microRNA 34c acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588)
(MGI:5578416|PMID:24982181)
MGI PMID:21628588 PMID:24982181 MGI:5013854 MGI:5578416 NCBI chr11:111,513,439...111,513,515
Ensembl chr11:111,513,439...111,513,515
JBrowse link
G MIR370 microRNA 370 acts_upstream_of_or_within ISO (MGI:5477897|PMID:23399934) MGI PMID:23399934 MGI:5477897 NCBI chr14:100,911,139...100,911,213
Ensembl chr14:100,911,139...100,911,213
JBrowse link
G MIR382 microRNA 382 involved_in ISO (MGI:6159438|PMID:29606596) MGI PMID:29606596 MGI:6159438 NCBI chr14:101,054,306...101,054,381
Ensembl chr14:101,054,306...101,054,381
JBrowse link
G MIR411 microRNA 411 involved_in ISO (MGI:6159438|PMID:29606596) MGI PMID:29606596 MGI:6159438 NCBI chr14:101,023,325...101,023,420
Ensembl chr14:101,023,325...101,023,420
JBrowse link
G MIR449A microRNA 449a acts_upstream_of_or_within ISO (MGI:5578416|PMID:24982181) MGI PMID:24982181 MGI:5578416 NCBI chr 5:55,170,532...55,170,622
Ensembl chr 5:55,170,532...55,170,622
JBrowse link
G MIR449B microRNA 449b acts_upstream_of_or_within ISO (MGI:5578416|PMID:24982181) MGI PMID:24982181 MGI:5578416 NCBI chr 5:55,170,646...55,170,742
Ensembl chr 5:55,170,646...55,170,742
JBrowse link
G MIR449C microRNA 449c acts_upstream_of_or_within ISO (MGI:5578416|PMID:24982181) MGI PMID:24982181 MGI:5578416 NCBI chr 5:55,172,262...55,172,353
Ensembl chr 5:55,172,262...55,172,353
JBrowse link
G MIR489 microRNA 489 acts_upstream_of_or_within ISO (MGI:5312165|PMID:22358842) MGI PMID:22358842 MGI:5312165 NCBI chr 7:93,483,936...93,484,019
Ensembl chr 7:93,483,936...93,484,019
JBrowse link
G MIR494 microRNA 494 acts_upstream_of_or_within ISO (MGI:5302482|PMID:20837890) MGI PMID:20837890 MGI:5302482 NCBI chr14:101,029,634...101,029,714
Ensembl chr14:101,029,634...101,029,714
JBrowse link
G MIR511 microRNA 511 acts_upstream_of_or_within ISO (MGI:5486412|PMID:22832163) MGI PMID:22832163 MGI:5486412 NCBI chr10:17,845,107...17,845,193
Ensembl chr10:17,845,107...17,845,193
JBrowse link
G MIR539 microRNA 539 acts_upstream_of_or_within ISO (MGI:5559032|PMID:24710105) MGI PMID:24710105 MGI:5559032 NCBI chr14:101,047,321...101,047,398
Ensembl chr14:101,047,321...101,047,398
JBrowse link
G MIR541 microRNA 541 involved_in ISO (MGI:6159438|PMID:29606596) MGI PMID:29606596 MGI:6159438 NCBI chr14:101,064,495...101,064,578
Ensembl chr14:101,064,495...101,064,578
JBrowse link
G MIR543 microRNA 543 involved_in ISO (MGI:6159438|PMID:29606596) MGI PMID:29606596 MGI:6159438 NCBI chr14:101,031,987...101,032,064
Ensembl chr14:101,031,987...101,032,064
JBrowse link
G MIR675 microRNA 675 acts_upstream_of_or_within ISO (MGI:5566551|PMID:24532688) MGI PMID:24532688 MGI:5566551 NCBI chr11:1,996,759...1,996,831
Ensembl chr11:1,996,759...1,996,831
JBrowse link
G MIR874 microRNA 874 acts_upstream_of_or_within ISO (MGI:5551666|PMID:24462679) MGI PMID:24462679 MGI:5551666 NCBI chr 5:137,647,572...137,647,649
Ensembl chr 5:137,647,572...137,647,649
JBrowse link
G MIRLET7A1 microRNA let-7a-1 acts_upstream_of_or_within ISO (MGI:4359358|PMID:18604195)
(MGI:5461254|PMID:23152446)
MGI PMID:18604195 PMID:23152446 MGI:4359358 MGI:5461254 NCBI chr 9:94,175,957...94,176,036
Ensembl chr 9:94,175,957...94,176,036
JBrowse link
G MIRLET7A2 microRNA let-7a-2 acts_upstream_of_or_within ISO (MGI:5461254|PMID:23152446)
(MGI:4359358|PMID:18604195)
MGI PMID:18604195 PMID:23152446 MGI:4359358 MGI:5461254 NCBI chr11:122,146,522...122,146,593
Ensembl chr11:122,146,522...122,146,593
JBrowse link
G MKKS MKKS centrosomal shuttling protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3794515|PMID:18317593), (MGI:3836843|PMID:19150989) Ensembl
MGI
PMID:18317593 PMID:19150989 GO_REF:0000107 MGI:3794515 MGI:3836843 NCBI chr20:10,401,009...10,434,222
Ensembl chr20:10,401,009...10,434,222
JBrowse link
G MMP8 matrix metallopeptidase 8 involved_in ISS (PMID:25049354) ARUK-UCL PMID:25049354 NCBI chr11:102,711,796...102,724,967
Ensembl chr11:102,711,796...102,727,050
JBrowse link
G MORC1 MORC family CW-type zinc finger 1 involved_in ISO (MGI:5700272|PMID:26275923) MGI PMID:26275923 MGI:5700272 NCBI chr 3:108,958,248...109,118,134
Ensembl chr 3:108,958,248...109,118,134
JBrowse link
G MSR1 macrophage scavenger receptor 1 involved_in ISS ARUK-UCL GO_REF:0000024 NCBI chr 8:16,107,881...16,192,651
Ensembl chr 8:16,107,878...16,567,490
JBrowse link
G MUSK muscle associated receptor tyrosine kinase ISO epsilon-acetylcholine receptor RGD PMID:15604144 RGD:2317103 NCBI chr 9:110,668,189...110,806,633
Ensembl chr 9:110,668,779...110,806,558
JBrowse link
G MYADM myeloid associated differentiation marker involved_in IMP (PMID:23264465) UniProt PMID:23264465 NCBI chr19:53,865,628...53,876,435
Ensembl chr19:53,864,763...53,876,435
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in ISO
IEA
Adipor1 RGD
Ensembl
PMID:23349663 GO_REF:0000107 RGD:7207857 NCBI chr 8:127,735,434...127,742,951
Ensembl chr 8:127,735,434...127,742,951
JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor involved_in IDA (PMID:21796614) BHF-UCL PMID:21796614 NCBI chr 2:15,940,550...15,947,004
Ensembl chr 2:15,940,550...15,947,007
JBrowse link
G MYT1 myelin transcription factor 1 acts_upstream_of_or_within ISO (MGI:3763794|PMID:17928203) MGI PMID:17928203 MGI:3763794 NCBI chr20:64,164,452...64,242,253
Ensembl chr20:64,102,394...64,242,253
JBrowse link
G NCOR1 nuclear receptor corepressor 1 ISO transcript levels RGD PMID:19608741 RGD:5688288 NCBI chr17:16,029,157...16,216,475
Ensembl chr17:16,029,157...16,218,185
JBrowse link
G NDFIP1 Nedd4 family interacting protein 1 involved_in IMP (PMID:18776082) UniProt PMID:18776082 NCBI chr 5:142,108,779...142,154,440
Ensembl chr 5:142,108,779...142,154,440
JBrowse link
G NDFIP2 Nedd4 family interacting protein 2 involved_in IMP (PMID:18776082) UniProt PMID:18776082 NCBI chr13:79,481,155...79,556,077
Ensembl chr13:79,481,124...79,556,075
JBrowse link
G NFKB1 nuclear factor kappa B subunit 1 involved_in IDA (PMID:26687115) BHF-UCL PMID:26687115 NCBI chr 4:102,501,266...102,617,302
Ensembl chr 4:102,501,331...102,617,302
JBrowse link
G NKX3-1 NK3 homeobox 1 involved_in IDA (PMID:17486276) UniProt PMID:17486276 NCBI chr 8:23,678,693...23,682,938
Ensembl chr 8:23,678,697...23,682,938
JBrowse link
G NME1 NME/NM23 nucleoside diphosphate kinase 1 ISO Mmp2 RGD PMID:12010125 RGD:633207 NCBI chr17:51,153,559...51,162,168
Ensembl chr17:51,153,559...51,162,428
JBrowse link
G NOCT nocturnin involved_in ISS UniProt GO_REF:0000024 NCBI chr 4:139,015,781...139,045,939
Ensembl chr 4:139,015,781...139,045,939
JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5051994|PMID:21624478) Ensembl
MGI
PMID:21624478 GO_REF:0000107 MGI:5051994 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
JBrowse link
G NOS2 nitric oxide synthase 2 involved_in IGI (PMID:12085352) UniProt PMID:12085352 NCBI chr17:27,756,766...27,800,529
Ensembl chr17:27,756,766...27,800,529
JBrowse link
G NOTCH1 notch receptor 1 involved_in IDA (PMID:11306509) UniProt PMID:11306509 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G NOTCH2 notch receptor 2 involved_in IDA (PMID:11306509) UniProt PMID:11306509 NCBI chr 1:119,911,553...120,069,662
Ensembl chr 1:119,911,553...120,100,779
JBrowse link
G NPM1 nucleophosmin 1 acts_upstream_of_or_within ISO (MGI:3805393|PMID:18625840) MGI PMID:18625840 MGI:3805393 NCBI chr 5:171,387,116...171,410,900
Ensembl chr 5:171,387,116...171,411,810
JBrowse link
G NR0B2 nuclear receptor subfamily 0 group B member 2 involved_in IMP (PMID:19085950) UniProt PMID:19085950 NCBI chr 1:26,911,489...26,914,110
Ensembl chr 1:26,911,489...26,913,975
JBrowse link
G NR1H2 nuclear receptor subfamily 1 group H member 2 involved_in ISO
IEA
RGD
Ensembl
PMID:7971966 GO_REF:0000107 RGD:61674 NCBI chr19:50,376,457...50,383,388
Ensembl chr19:50,329,653...50,383,388
JBrowse link
G NRXN1 neurexin 1 involved_in IDA (PMID:26078884) ARUK-UCL PMID:26078884 NCBI chr 2:49,918,503...51,032,132
Ensembl chr 2:49,918,503...51,225,575
JBrowse link
G NTS neurotensin acts_upstream_of IDA (PMID:21806946) ARUK-UCL PMID:21806946 NCBI chr12:85,874,295...85,882,992
Ensembl chr12:85,874,295...85,882,992
JBrowse link
G OCLN occludin involved_in IMP (PMID:21415414) ARUK-UCL PMID:21415414 NCBI chr 5:69,492,547...69,558,104
Ensembl chr 5:69,492,292...69,558,104
JBrowse link
G OLFM1 olfactomedin 1 involved_in ISS AgBase GO_REF:0000024 NCBI chr 9:135,075,505...135,121,184
Ensembl chr 9:135,075,422...135,121,180
JBrowse link
G OLR1 oxidized low density lipoprotein receptor 1 involved_in ISO PMID:28108289 BHF-UCL PMID:28108289 RGD:13464258 NCBI chr12:10,158,301...10,172,132
Ensembl chr12:10,158,301...10,172,138
JBrowse link
G OPRD1 opioid receptor delta 1 involved_in IDA (PMID:24613828) ParkinsonsUK-UCL PMID:24613828 NCBI chr 1:28,812,170...28,871,267
Ensembl chr 1:28,812,142...28,871,267
JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in ISS ARUK-UCL GO_REF:0000024 NCBI chr20:18,024,152...18,059,188
Ensembl chr20:17,956,979...18,059,188
JBrowse link
G PARK7 Parkinsonism associated deglycase involved_in IDA (PMID:22683601) ParkinsonsUK-UCL PMID:22683601 NCBI chr 1:7,961,711...7,985,505
Ensembl chr 1:7,954,291...7,985,505
JBrowse link
G PARP10 poly(ADP-ribose) polymerase family member 10 involved_in IMP
IBA
(PMID:23575687)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:23575687 NCBI chr 8:143,977,158...143,986,460
Ensembl chr 8:143,977,153...144,012,772
JBrowse link
G PARP14 poly(ADP-ribose) polymerase family member 14 involved_in IMP
IBA
(PMID:27796300)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:27796300 NCBI chr 3:122,680,726...122,730,840
Ensembl chr 3:122,680,839...122,730,840
JBrowse link
G PARP15 poly(ADP-ribose) polymerase family member 15 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:122,575,926...122,639,047
Ensembl chr 3:122,577,628...122,639,047
JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 involved_in IMP
IBA
(PMID:27796300)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:27796300 NCBI chr 3:122,527,924...122,564,784
Ensembl chr 3:122,527,924...122,564,577
JBrowse link
G PAWR pro-apoptotic WT1 regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:79,584,879...79,691,097
Ensembl chr12:79,574,979...79,690,964
JBrowse link
G PC pyruvate carboxylase involved_in IMP (PMID:23861867) AgBase PMID:23861867 NCBI chr11:66,848,420...66,958,418
Ensembl chr11:66,848,417...66,958,386
JBrowse link
G PDCD10 programmed cell death 10 involved_in IMP (PMID:23388056) UniProt PMID:23388056 NCBI chr 3:167,683,298...167,735,810
Ensembl chr 3:167,683,298...167,734,939
JBrowse link
G PDGFB platelet derived growth factor subunit B involved_in IDA (PMID:23554459), (PMID:25089138) BHF-UCL PMID:23554459 PMID:25089138 NCBI chr22:39,223,359...39,244,982
Ensembl chr22:39,223,359...39,244,982
JBrowse link
G PGR progesterone receptor involved_in IEP (PMID:21695196) UniProt PMID:21695196 NCBI chr11:101,029,624...101,130,681
Ensembl chr11:101,029,624...101,129,813
JBrowse link
G PIAS3 protein inhibitor of activated STAT 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3836131|PMID:17442941) Ensembl
MGI
PMID:17442941 GO_REF:0000107 MGI:3836131 NCBI chr 1:145,848,522...145,859,081
Ensembl chr 1:145,848,522...145,859,836
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein involved_in IMP (PMID:22952941) Alzheimers_University_of_Toronto PMID:22952941 NCBI chr11:85,957,175...86,069,860
Ensembl chr11:85,957,175...86,069,882
JBrowse link
G PICK1 protein interacting with PRKCA 1 involved_in ISO PMID:24749734 ParkinsonsUK-UCL PMID:24749734 RGD:10047218 NCBI chr22:38,056,311...38,075,704
Ensembl chr22:38,056,311...38,075,701
JBrowse link
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:179,148,114...179,240,093
Ensembl chr 3:179,148,114...179,240,093
JBrowse link
G PIK3CD phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta involved_in ISO PMID:28947594 BHF-UCL PMID:28947594 RGD:13524616 NCBI chr 1:9,629,889...9,729,114
Ensembl chr 1:9,651,731...9,729,114
JBrowse link
G PINK1 PTEN induced kinase 1 involved_in ISS (PMID:24475098) ParkinsonsUK-UCL PMID:24475098 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511
JBrowse link
G PLA2G3 phospholipase A2 group III acts_upstream_of_or_within IDA (PMID:26637123) MGI PMID:26637123 NCBI chr22:31,134,807...31,140,508
Ensembl chr22:31,134,807...31,140,508
JBrowse link
G PLAG1 PLAG1 zinc finger involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:56,160,909...56,211,327
Ensembl chr 8:56,160,909...56,211,324
JBrowse link
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (MGI:5517729|PMID:23847051) MGI PMID:23847051 MGI:5517729 NCBI chr17:15,229,779...15,265,326
Ensembl chr17:15,229,773...15,272,292
JBrowse link
G POU2F1 POU class 2 homeobox 1 involved_in ISO PMID:28108289 BHF-UCL PMID:28108289 RGD:13464258 NCBI chr 1:167,220,878...167,427,345
Ensembl chr 1:167,220,876...167,427,345
JBrowse link
G POU3F2 POU class 3 homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:98,834,574...98,839,458
Ensembl chr 6:98,834,574...98,839,458
JBrowse link
G POU4F1 POU class 4 homeobox 1 involved_in ISS ARUK-UCL GO_REF:0000024 NCBI chr13:78,598,362...78,603,552
Ensembl chr13:78,598,362...78,603,552
JBrowse link
G POU5F1 POU class 5 homeobox 1 involved_in ISO (MGI:5490149|PMID:23495099) AgBase PMID:23495099 MGI:5490149 NCBI chr 6:31,164,337...31,170,682
Ensembl chr 6:31,164,337...31,180,731
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma involved_in
acts_upstream_of
acts_upstream_of_or_within
IDA
ISS
IEA
ISO
IGI
(PMID:28467929)
(MGI:5462034|PMID:21880694)
ARUK-UCL
BHF-UCL
Ensembl
BHF-UCL
PMID:21880694 PMID:28467929 GO_REF:0000024 GO_REF:0000107 MGI:5462034 NCBI chr 3:12,287,368...12,434,344
Ensembl chr 3:12,287,368...12,434,356
JBrowse link
G PPP2CB protein phosphatase 2 catalytic subunit beta acts_upstream_of_or_within IMP
IGI
(PMID:28159925) ARUK-UCL PMID:28159925 NCBI chr 8:30,785,616...30,812,818
Ensembl chr 8:30,774,457...30,814,314
JBrowse link
G PPP3CA protein phosphatase 3 catalytic subunit alpha involved_in ISO (MGI:5562625|PMID:24161931) BHF-UCL PMID:24161931 MGI:5562625 NCBI chr 4:101,023,418...101,348,295
Ensembl chr 4:101,023,409...101,348,278
JBrowse link
G PRDM1 PR/SET domain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5014435|PMID:21670299) Ensembl
MGI
PMID:21670299 GO_REF:0000107 MGI:5014435 NCBI chr 6:106,046,729...106,109,938
Ensembl chr 6:105,993,463...106,109,939
JBrowse link
G PRDM4 PR/SET domain 4 involved_in ISO PMID:23048031 ParkinsonsUK-UCL PMID:23048031 RGD:10054084 NCBI chr12:107,732,866...107,761,272
Ensembl chr12:107,732,871...107,761,272
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISS ARUK-UCL GO_REF:0000024 NCBI chr 5:40,759,389...40,798,374
Ensembl chr 5:40,759,379...40,798,374
JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in ISS ARUK-UCL GO_REF:0000024 NCBI chr 1:56,645,314...56,715,335
Ensembl chr 1:56,645,314...56,715,335
JBrowse link
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha acts_upstream_of IMP (PMID:28159925) ARUK-UCL PMID:28159925 NCBI chr17:68,413,623...68,551,316
Ensembl chr17:68,511,780...68,551,319
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IMP (PMID:19725078), (PMID:22314364) ParkinsonsUK-UCL PMID:19725078 PMID:22314364 NCBI chr 6:161,347,417...162,727,802
Ensembl chr 6:161,347,417...162,727,775
JBrowse link
G PSEN1 presenilin 1 involved_in IGI (PMID:28008308), (PMID:29061364) ARUK-UCL PMID:28008308 PMID:29061364 NCBI chr14:73,136,436...73,223,691
Ensembl chr14:73,136,418...73,223,691
JBrowse link
G PTH parathyroid hormone involved_in IDA (PMID:17696759) GO_Central PMID:17696759 NCBI chr11:13,492,054...13,496,181
Ensembl chr11:13,492,054...13,496,181
JBrowse link
G PTPN22 protein tyrosine phosphatase non-receptor type 22 involved_in IMP (PMID:23991106) UniProt PMID:23991106 NCBI chr 1:113,813,811...113,871,761
Ensembl chr 1:113,813,811...113,871,753
JBrowse link
G PTRH2 peptidyl-tRNA hydrolase 2 involved_in IMP (PMID:15006356) UniProt PMID:15006356 NCBI chr17:59,697,306...59,707,626
Ensembl chr17:59,674,636...59,707,626
JBrowse link
G RACK1 receptor for activated C kinase 1 involved_in IMP (PMID:19451233) UniProt PMID:19451233 NCBI chr 5:181,236,897...181,243,906
Ensembl chr 5:181,236,897...181,248,096
JBrowse link
G RARA retinoic acid receptor alpha acts_upstream_of_or_within ISO (MGI:3771251|PMID:18026104) MGI PMID:18026104 MGI:3771251 NCBI chr17:40,309,180...40,357,643
Ensembl chr17:40,309,180...40,357,643
JBrowse link
G RB1 RB transcriptional corepressor 1 acts_upstream_of_or_within IMP (PMID:25100735) MGI PMID:25100735 NCBI chr13:48,303,751...48,481,890
Ensembl chr13:48,303,744...48,599,436
JBrowse link
G RBL1 RB transcriptional corepressor like 1 acts_upstream_of_or_within IMP (PMID:25100735) MGI PMID:25100735 NCBI chr20:36,996,349...37,096,029
Ensembl chr20:36,996,349...37,095,997
JBrowse link
G RBL2 RB transcriptional corepressor like 2 acts_upstream_of_or_within IMP (PMID:25100735) MGI PMID:25100735 NCBI chr16:53,434,471...53,491,648
Ensembl chr16:53,433,977...53,491,648
JBrowse link
G RBMS3 RNA binding motif single stranded interacting protein 3 involved_in IMP (PMID:28409548) UniProt PMID:28409548 NCBI chr 3:29,280,860...30,010,395
Ensembl chr 3:28,574,791...30,010,391
JBrowse link
G RCOR1 REST corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:102,592,593...102,730,572
Ensembl chr14:102,592,649...102,730,561
JBrowse link
G REL REL proto-oncogene, NF-kB subunit involved_in IDA (PMID:22065573) CACAO PMID:22065573 NCBI chr 2:60,881,521...60,931,612
Ensembl chr 2:60,881,521...60,931,612
JBrowse link
G REST RE1 silencing transcription factor involved_in IMP (PMID:20564196) UniProt PMID:20564196 NCBI chr 4:56,907,900...56,935,847
Ensembl chr 4:56,907,876...56,966,808
JBrowse link
G RNASEH2B ribonuclease H2 subunit B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5435090|PMID:22802351) Ensembl
MGI
PMID:22802351 GO_REF:0000107 MGI:5435090 NCBI chr13:50,909,678...50,970,462
Ensembl chr13:50,909,747...51,024,120
JBrowse link
G ROBO1 roundabout guidance receptor 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 3:78,597,239...79,767,998
Ensembl chr 3:78,597,239...79,767,998
JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 involved_in ISS ARUK-UCL GO_REF:0000024 NCBI chr 2:11,179,759...11,345,437
Ensembl chr 2:11,179,759...11,348,330
JBrowse link
G ROS1 ROS proto-oncogene 1, receptor tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2675865|PMID:12773415) Ensembl
MGI
PMID:12773415 GO_REF:0000107 MGI:2675865 NCBI chr 6:117,287,353...117,426,065
Ensembl chr 6:117,287,353...117,425,942
JBrowse link
G SAMD7 sterile alpha motif domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:169,911,572...169,939,175
Ensembl chr 3:169,911,572...169,939,175
JBrowse link
G SERPINE1 serpin family E member 1 ISO caspase-3 RGD PMID:22659625 RGD:8547927 NCBI chr 7:101,127,104...101,139,247
Ensembl chr 7:101,127,104...101,139,247
JBrowse link
G SERPINF1 serpin family F member 1 involved_in IEA
ISO
Hif1a Ensembl
RGD
PMID:21922517 GO_REF:0000107 RGD:8554899 NCBI chr17:1,762,060...1,777,565
Ensembl chr17:1,762,029...1,777,565
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:150,926,263...150,964,737
Ensembl chr 1:150,926,263...150,964,744
JBrowse link
G SETDB2 SET domain bifurcated histone lysine methyltransferase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:49,444,274...49,495,003
Ensembl chr13:49,444,374...49,495,003
JBrowse link
G SFMBT2 Scm like with four mbt domains 2 involved_in IDA (PMID:23385818) UniProt PMID:23385818 NCBI chr10:7,158,624...7,411,490
Ensembl chr10:7,158,624...7,411,488
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within
IDA
ISO
(PMID:10980594)
(MGI:4429763|PMID:19850029)
UniProt
MGI
PMID:10980594 PMID:19850029 MGI:4429763 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in ISS (PMID:10980594) UniProt PMID:10980594 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083
JBrowse link
G SGMS1-AS1 SGMS1 antisense RNA 1 acts_upstream_of_or_within ISO (MGI:5516374|PMID:24101522) MGI PMID:24101522 MGI:5516374 NCBI chr10:50,624,951...50,631,636
Ensembl chr10:50,623,466...50,641,451
JBrowse link
G SH3GL2 SH3 domain containing GRB2 like 2, endophilin A1 involved_in IMP (PMID:24854121) ARUK-UCL PMID:24854121 NCBI chr 9:17,579,066...17,797,124
Ensembl chr 9:17,579,066...17,797,124
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
G SIRT1 sirtuin 1 involved_in IMP (PMID:17916362), (PMID:20203304) CACAO PMID:17916362 PMID:20203304 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390
JBrowse link
G SLC24A3 solute carrier family 24 member 3 acts_upstream_of_or_within ISS ARUK-UCL GO_REF:0000024 NCBI chr20:19,212,642...19,722,926
Ensembl chr20:19,212,642...19,722,926
JBrowse link
G SLC2A10 solute carrier family 2 member 10 acts_upstream_of_or_within IMP (PMID:16550171) ARUK-UCL PMID:16550171 NCBI chr20:46,708,358...46,736,347
Ensembl chr20:46,709,649...46,736,347
JBrowse link
G SLC35C2 solute carrier family 35 member C2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4849897|PMID:20837470) Ensembl
MGI
PMID:20837470 GO_REF:0000107 MGI:4849897 NCBI chr20:46,345,984...46,364,427
Ensembl chr20:46,345,980...46,364,458
JBrowse link
G SLC7A5 solute carrier family 7 member 5 acts_upstream_of IMP (PMID:24038088) ARUK-UCL PMID:24038088 NCBI chr16:87,830,022...87,869,507
Ensembl chr16:87,830,023...87,869,507
JBrowse link
G SLIT2 slit guidance ligand 2 acts_upstream_of_or_within ISO (MGI:3819920|PMID:18829537) MGI PMID:18829537 MGI:3819920 NCBI chr 4:20,251,905...20,620,561
Ensembl chr 4:20,251,905...20,620,561
JBrowse link
G SLIT3 slit guidance ligand 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3819920|PMID:18829537) Ensembl
MGI
PMID:18829537 GO_REF:0000107 MGI:3819920 NCBI chr 5:168,661,740...169,301,139
Ensembl chr 5:168,661,733...169,301,139
JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:5461254|PMID:23152446) MGI PMID:23152446 MGI:5461254 NCBI chr18:47,808,957...47,931,188
Ensembl chr18:47,808,957...47,931,146
JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IMP (PMID:28195531) HGNC PMID:28195531 NCBI chr17:18,315,293...18,328,056
Ensembl chr17:18,315,293...18,328,056
JBrowse link
G SMO smoothened, frizzled class receptor involved_in ISS UniProt GO_REF:0000024 NCBI chr 7:129,188,633...129,213,548
Ensembl chr 7:129,188,633...129,213,545
JBrowse link
G SNX12 sorting nexin 12 involved_in IMP (PMID:22709416) UniProt PMID:22709416 NCBI chr  X:71,059,247...71,073,426
Ensembl chr  X:71,056,332...71,073,426
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in IMP (PMID:19808959) UniProt PMID:19808959 NCBI chr 2:5,692,384...5,701,385
Ensembl chr 2:5,692,384...5,701,385
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5524169|PMID:24218621) Ensembl
MGI
PMID:24218621 GO_REF:0000107 MGI:5524169 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416
JBrowse link
G SPI1 Spi-1 proto-oncogene involved_in IMP (PMID:29290617) ARUK-UCL PMID:29290617 NCBI chr11:47,354,859...47,395,640
Ensembl chr11:47,354,860...47,378,547
JBrowse link
G SRSF6 serine and arginine rich splicing factor 6 ISO Bcl2l11 RGD PMID:23737756 RGD:11039479 NCBI chr20:43,457,893...43,464,243
Ensembl chr20:43,457,893...43,466,046
JBrowse link
G SRY sex determining region Y acts_upstream_of_or_within ISO (MGI:3027475|PMID:11869290) MGI PMID:11869290 MGI:3027475 NCBI chr  Y:2,786,855...2,787,682
Ensembl chr  Y:2,786,855...2,787,682
JBrowse link
G STC2 stanniocalcin 2 involved_in IDA (PMID:9753616) UniProt PMID:9753616 NCBI chr 5:173,314,723...173,328,414
Ensembl chr 5:173,314,723...173,328,447
JBrowse link
G STOX1 storkhead box 1 involved_in IMP (PMID:22253775) UniProt PMID:22253775 NCBI chr10:68,827,531...68,895,942
Ensembl chr10:68,827,531...68,895,432
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 involved_in IMP (PMID:17237821) ParkinsonsUK-UCL PMID:17237821 NCBI chr  X:71,366,220...71,530,525
Ensembl chr  X:71,366,222...71,532,374
JBrowse link
G TARDBP TAR DNA binding protein involved_in IMP (PMID:18305152) CACAO PMID:18305152 NCBI chr 1:11,012,654...11,030,528
Ensembl chr 1:11,012,344...11,030,528
JBrowse link
G TBK1 TANK binding kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:64,452,105...64,502,114
Ensembl chr12:64,452,090...64,502,114
JBrowse link
G TCEAL1 transcription elongation factor A like 1 NOT|acts_upstream_of_or_within_negative_effect TAS (PMID:7971997) GO_Central PMID:7971997 NCBI chr  X:103,628,716...103,630,953
Ensembl chr  X:103,628,704...103,630,953
JBrowse link
G TCF4 transcription factor 4 acts_upstream_of_or_within ISO (MGI:4453908|PMID:20231428) MGI PMID:20231428 MGI:4453908 NCBI chr18:55,222,185...55,635,957
Ensembl chr18:55,222,185...55,664,787
JBrowse link
G TCL1A TCL1 family AKT coactivator A acts_upstream_of_or_within ISO (MGI:3759699|PMID:17938240) MGI PMID:17938240 MGI:3759699 NCBI chr14:95,694,160...95,714,155
Ensembl chr14:95,709,947...95,714,196
JBrowse link
G TERF2 telomeric repeat binding factor 2 involved_in IMP (PMID:11927518) BHF-UCL PMID:11927518 NCBI chr16:69,355,567...69,386,007
Ensembl chr16:69,355,567...69,408,571
JBrowse link
G TERT telomerase reverse transcriptase involved_in IDA (PMID:11927518) BHF-UCL PMID:11927518 NCBI chr 5:1,253,167...1,295,068
Ensembl chr 5:1,253,147...1,295,068
JBrowse link
G TFAP4 transcription factor AP-4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:4,257,186...4,273,023
Ensembl chr16:4,257,186...4,273,075
JBrowse link
G TGFB1 transforming growth factor beta 1 acts_upstream_of
involved_in
acts_upstream_of_or_within
NAS
IDA
ISS
IGI
(PMID:26451614)
(PMID:19913496), (PMID:20067797), (PMID:22269326), (PMID:25163461), (PMID:26634652), (PMID:28467929), (PMID:29167509)
(PMID:29529050)
(PMID:22269326)
BHF-UCL
MGI
PMID:19913496 PMID:20067797 PMID:22269326 PMID:25163461 PMID:26451614 More... GO_REF:0000024 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IDA (PMID:25217442) BHF-UCL PMID:25217442 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 involved_in ISO (MGI:5688831|PMID:22960625) BHF-UCL PMID:22960625 MGI:5688831 NCBI chr 1:91,680,343...91,906,002
Ensembl chr 1:91,680,343...91,906,335
JBrowse link
G TGIF1 TGFB induced factor homeobox 1 ISO tropoelastin RGD PMID:18441095 RGD:2317192 NCBI chr18:3,412,009...3,459,978
Ensembl chr18:3,411,608...3,459,978
JBrowse link
G TIPARP TCDD inducible poly(ADP-ribose) polymerase acts_upstream_of_or_within IMP (PMID:23275542) MGI PMID:23275542 NCBI chr 3:156,674,590...156,706,770
Ensembl chr 3:156,673,235...156,706,770
JBrowse link
G TLE5 TLE family member 5, transcriptional modulator involved_in IMP (PMID:15006356) UniProt PMID:15006356 NCBI chr19:3,052,910...3,063,107
Ensembl chr19:3,052,910...3,063,107
JBrowse link
G TMF1 TATA element modulatory factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5440392|PMID:22553199) Ensembl
MGI
PMID:22553199 GO_REF:0000107 MGI:5440392 NCBI chr 3:69,019,827...69,052,333
Ensembl chr 3:69,019,827...69,052,339
JBrowse link
G TNF tumor necrosis factor acts_upstream_of_or_within
involved_in
IDA
IGI
(PMID:20164187), (PMID:31124343), (PMID:31824476)
(PMID:22499991)
(PMID:24299952)
(PMID:15345745), (PMID:22267480), (PMID:26371161)
ARUK-UCL
BHF-UCL
PMID:15345745 PMID:20164187 PMID:22267480 PMID:22499991 PMID:24299952 More... NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336
JBrowse link
G TNFRSF1A TNF receptor superfamily member 1A ISO type 2 iodothyronine deiodinase in alpha tanycytes RGD PMID:20501675 RGD:5130988 NCBI chr12:6,328,771...6,342,076
Ensembl chr12:6,328,757...6,342,114
JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within ISO (MGI:3805393|PMID:18625840) MGI PMID:18625840 MGI:3805393 NCBI chr17:7,668,421...7,687,490
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G TP53COR1 tumor protein p53 pathway corepressor 1 acts_upstream_of_or_within ISO (MGI:4881379|PMID:20673990) MGI PMID:20673990 MGI:4881379
G TP53INP1 tumor protein p53 inducible nuclear protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:94,925,972...94,949,378
Ensembl chr 8:94,925,972...94,949,378
JBrowse link
G TRIM6 tripartite motif containing 6 involved_in IMP (PMID:24882218) UniProt PMID:24882218 NCBI chr11:5,596,111...5,612,952
Ensembl chr11:5,596,109...5,612,958
JBrowse link
G TTBK1 tau tubulin kinase 1 involved_in IMP (PMID:19118186) ARUK-UCL PMID:19118186 NCBI chr 6:43,243,481...43,288,259
Ensembl chr 6:43,243,481...43,288,258
JBrowse link
G UCN urocortin involved_in IEA
ISO
ghrelin
Pla2g6
Ensembl
RGD
PMID:14563694 PMID:21540451 GO_REF:0000107 RGD:5490560 RGD:5508192 NCBI chr 2:27,307,400...27,308,445
Ensembl chr 2:27,307,400...27,308,445
JBrowse link
G UCN2 urocortin 2 ISO Fshb RGD PMID:19193717 RGD:2317015 NCBI chr 3:48,561,718...48,563,781
Ensembl chr 3:48,561,718...48,563,781
JBrowse link
G UPK3B uroplakin 3B involved_in IMP (PMID:18776082) UniProt PMID:18776082 NCBI chr 7:76,510,552...76,516,522
Ensembl chr 7:76,510,525...76,516,522
JBrowse link
G VEGFA vascular endothelial growth factor A involved_in
acts_upstream_of_or_within
IMP
ISO
IDA
(PMID:19148554)
(MGI:5461755|PMID:22886301)
(PMID:22773844), (PMID:28977001)
ARUK-UCL
MGI
BHF-UCL
PMID:19148554 PMID:22773844 PMID:22886301 PMID:28977001 MGI:5461755 NCBI chr 6:43,770,209...43,786,487
Ensembl chr 6:43,770,184...43,786,487
JBrowse link
G VEGFB vascular endothelial growth factor B involved_in IDA (PMID:18259607) UniProt PMID:18259607 NCBI chr11:64,234,584...64,239,264
Ensembl chr11:64,234,584...64,239,264
JBrowse link
G VHL von Hippel-Lindau tumor suppressor involved_in
acts_upstream_of_or_within
IMP
ISO
(PMID:23338840)
(MGI:5429122|PMID:22627278)
CAFA
MGI
PMID:22627278 PMID:23338840 MGI:5429122 NCBI chr 3:10,141,778...10,153,667
Ensembl chr 3:10,141,778...10,153,667
JBrowse link
G VPS35 VPS35 retromer complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:46,656,132...46,689,194
Ensembl chr16:46,656,132...46,689,518
JBrowse link
G WDR35 WD repeat domain 35 ISO Gch1
Bcl2, Bcl2l1
RGD PMID:18671723 PMID:23289926 RGD:11553920 RGD:11553926 NCBI chr 2:19,910,260...19,990,105
Ensembl chr 2:19,910,263...19,990,105
JBrowse link
G WNT4 Wnt family member 4 involved_in
acts_upstream_of_or_within
IDA
ISO
(PMID:15317892)
(MGI:2178881|PMID:11948913)
UniProt
MGI
PMID:11948913 PMID:15317892 MGI:2178881 NCBI chr 1:22,117,308...22,143,981
Ensembl chr 1:22,117,313...22,143,969
JBrowse link
G WNT8B Wnt family member 8B acts_upstream_of_or_within ISO (MGI:4413515|PMID:19890917) MGI PMID:19890917 MGI:4413515 NCBI chr10:100,463,009...100,483,744
Ensembl chr10:100,463,009...100,483,744
JBrowse link
G WWP2 WW domain containing E3 ubiquitin protein ligase 2 involved_in IMP (PMID:18776082) UniProt PMID:18776082 NCBI chr16:69,762,301...69,941,741
Ensembl chr16:69,762,328...69,941,741
JBrowse link
G XDH xanthine dehydrogenase involved_in IDA (PMID:18386220) UniProt PMID:18386220 NCBI chr 2:31,334,320...31,414,777
Ensembl chr 2:31,334,321...31,414,742
JBrowse link
G YAP1 Yes1 associated transcriptional regulator involved_in IMP (PMID:29403552) CACAO PMID:29403552 NCBI chr11:102,109,957...102,233,424
Ensembl chr11:102,110,447...102,233,424
JBrowse link
G YY1 YY1 transcription factor involved_in IMP (PMID:22065573) CACAO PMID:22065573 NCBI chr14:100,239,144...100,282,788
Ensembl chr14:100,238,298...100,282,788
JBrowse link
G ZBTB20 zinc finger and BTB domain containing 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:114,314,500...115,147,288
Ensembl chr 3:114,314,500...115,147,288
JBrowse link
G ZBTB7B zinc finger and BTB domain containing 7B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5450776|PMID:23034280) Ensembl
MGI
PMID:23034280 GO_REF:0000107 MGI:5450776 NCBI chr 1:155,002,628...155,018,523
Ensembl chr 1:155,002,630...155,018,522
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IDA (PMID:18178554) BHF-UCL PMID:18178554 NCBI chr 1:37,474,518...37,484,377
Ensembl chr 1:37,474,580...37,484,377
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr14:68,787,655...68,796,243
Ensembl chr14:68,787,660...68,796,253
JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO (MGI:3789238|PMID:16079796), (MGI:5609934|PMID:23117660) MGI PMID:16079796 PMID:23117660 MGI:3789238 MGI:5609934 NCBI chr 1:40,258,078...40,294,180
Ensembl chr 1:40,258,041...40,294,180
JBrowse link
G ZNF148 zinc finger protein 148 involved_in IDA (PMID:12771217) UniProt PMID:12771217 NCBI chr 3:125,225,669...125,375,354
Ensembl chr 3:125,225,669...125,375,325
JBrowse link
G ZNF281 zinc finger protein 281 involved_in IMP
IDA
(PMID:10448078)
(PMID:12771217)
UniProt PMID:10448078 PMID:12771217 NCBI chr 1:200,404,951...200,410,036
Ensembl chr 1:200,404,940...200,410,056
JBrowse link
G ZNF410 zinc finger protein 410 involved_in IMP (PMID:33301730) UniProt PMID:33301730 NCBI chr14:73,886,859...73,932,521
Ensembl chr14:73,886,617...73,932,521
JBrowse link
G ZNF503 zinc finger protein 503 involved_in IDA (PMID:20735826) UniProt PMID:20735826 NCBI chr10:75,279,725...75,401,916
Ensembl chr10:75,397,830...75,401,764
JBrowse link
3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in IDA (PMID:21336257) UniProt PMID:21336257 NCBI chr10:92,046,692...92,291,499
Ensembl chr10:92,046,692...92,291,078
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in IMP (PMID:26489465) UniProt PMID:26489465 NCBI chr 3:154,272,546...154,324,487
Ensembl chr 3:154,272,546...154,324,487
JBrowse link
G DND1 DND microRNA-mediated repression inhibitor 1 involved_in IDA (PMID:28297718) CACAO PMID:28297718 NCBI chr 5:140,670,794...140,673,576
Ensembl chr 5:140,670,794...140,673,576
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D involved_in IEA
ISO
Ensembl
RGD
PMID:20805360 GO_REF:0000107 RGD:10042974 NCBI chr 4:82,352,498...82,373,991
Ensembl chr 4:82,352,498...82,374,503
JBrowse link
G KHSRP KH-type splicing regulatory protein involved_in IMP
IDA
(PMID:28275056)
(PMID:16126846)
CACAO
UniProt
PMID:16126846 PMID:28275056 NCBI chr19:6,413,102...6,424,811
Ensembl chr19:6,413,102...6,424,811
JBrowse link
G MOV10 Mov10 RISC complex RNA helicase involved_in IDA (PMID:24726324) UniProt PMID:24726324 NCBI chr 1:112,674,427...112,702,377
Ensembl chr 1:112,673,141...112,700,746
JBrowse link
G PLEKHN1 pleckstrin homology domain containing N1 involved_in IBA
IDA
(PMID:21873635)
(PMID:29180010)
GO_Central
UniProt
PMID:21873635 PMID:29180010 NCBI chr 1:965,820...975,865
Ensembl chr 1:966,482...975,865
JBrowse link
G QKI QKI, KH domain containing RNA binding acts_upstream_of_or_within ISO (MGI:5316962|PMID:20631256) MGI PMID:20631256 MGI:5316962 NCBI chr 6:163,414,486...163,578,592
Ensembl chr 6:163,414,000...163,578,592
JBrowse link
G RBM24 RNA binding motif protein 24 involved_in IDA (PMID:24375645) UniProt PMID:24375645 NCBI chr 6:17,281,361...17,293,875
Ensembl chr 6:17,281,361...17,293,871
JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:173,931,084...174,022,357
Ensembl chr 1:173,931,084...174,022,357
JBrowse link
G TARDBP TAR DNA binding protein involved_in IDA (PMID:28335005) CACAO PMID:28335005 NCBI chr 1:11,012,654...11,030,528
Ensembl chr 1:11,012,344...11,030,528
JBrowse link
G TRIM71 tripartite motif containing 71 involved_in IDA (PMID:23125361) CACAO PMID:23125361 NCBI chr 3:32,817,997...32,897,824
Ensembl chr 3:32,817,997...32,897,824
JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IMP
IDA
(PMID:26255671)
(PMID:24726324)
UniProt PMID:24726324 PMID:26255671 NCBI chr19:18,831,405...18,868,230
Ensembl chr19:18,831,959...18,868,230
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IBA
ISS
IDA
(PMID:21873635)
(PMID:19909337)
GO_Central
UniProt
PMID:19909337 PMID:21873635 GO_REF:0000024 NCBI chr 1:37,474,518...37,484,377
Ensembl chr 1:37,474,580...37,484,377
JBrowse link
G ZC3H12D zinc finger CCCH-type containing 12D involved_in ISS UniProt GO_REF:0000024 NCBI chr 6:149,446,795...149,485,014
Ensembl chr 6:149,446,795...149,485,014
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IDA
IMP
(PMID:11719186), (PMID:15687258), (PMID:20221403), (PMID:27193233), (PMID:9703499)
(PMID:14679154), (PMID:15187101), (PMID:15634918), (PMID:15766526)
UniProt PMID:9703499 PMID:11719186 PMID:14679154 PMID:15187101 PMID:15634918 More... NCBI chr19:39,406,847...39,409,407
Ensembl chr19:39,406,847...39,409,412
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IDA
IMP
(PMID:15467755), (PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:24700863), (PMID:26542173)
(PMID:12198173), (PMID:25014217), (PMID:25106868)
UniProt PMID:12198173 PMID:15467755 PMID:15538381 PMID:15687258 PMID:18326031 More... NCBI chr14:68,787,655...68,796,243
Ensembl chr14:68,787,660...68,796,253
JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in ISS
IMP
(PMID:25106868) UniProt PMID:25106868 GO_REF:0000024 NCBI chr 2:43,222,402...43,226,606
Ensembl chr 2:43,222,402...43,226,606
JBrowse link
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANGEL2 angel homolog 2 involved_in IBA
IMP
(PMID:21873635)
(PMID:22547059)
GO_Central
HGNC
PMID:21873635 PMID:22547059 NCBI chr 1:212,992,182...213,015,872
Ensembl chr 1:212,992,182...213,015,867
JBrowse link
G BOLL boule homolog, RNA binding protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:197,726,890...197,786,312
Ensembl chr 2:197,726,879...197,786,762
JBrowse link
G DAZ1 deleted in azoospermia 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  Y:23,129,355...23,199,117
Ensembl chr  Y:23,129,355...23,199,010
JBrowse link
G DAZ2 deleted in azoospermia 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  Y:23,219,457...23,291,356
Ensembl chr  Y:23,219,434...23,291,356
JBrowse link
G DAZ3 deleted in azoospermia 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  Y:24,763,069...24,813,393
Ensembl chr  Y:24,763,069...24,813,492
JBrowse link
G DAZ4 deleted in azoospermia 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  Y:24,833,806...24,907,040
Ensembl chr  Y:24,833,843...24,907,040
JBrowse link
G DAZL deleted in azoospermia like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:16,586,792...16,605,423
Ensembl chr 3:16,586,792...16,670,306
JBrowse link
G ELAVL1 ELAV like RNA binding protein 1 involved_in IMP
IDA
(PMID:19029303)
(PMID:14517288), (PMID:26489465), (PMID:29180010)
UniProt PMID:14517288 PMID:19029303 PMID:26489465 PMID:29180010 NCBI chr19:7,958,573...8,005,641
Ensembl chr19:7,958,573...8,005,659
JBrowse link
G ELAVL4 ELAV like RNA binding protein 4 involved_in IDA (PMID:12034726) UniProt PMID:12034726 NCBI chr 1:50,048,055...50,203,772
Ensembl chr 1:50,024,029...50,203,772
JBrowse link
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 involved_in TAS
ISS
(PMID:20932473) UniProt PMID:20932473 GO_REF:0000024 NCBI chr 5:137,745,651...137,754,363
Ensembl chr 5:137,745,651...137,754,363
JBrowse link
G HNRNPC heterogeneous nuclear ribonucleoprotein C involved_in IMP (PMID:16010978) UniProt PMID:16010978 NCBI chr14:21,209,147...21,269,442
Ensembl chr14:21,209,136...21,269,494
JBrowse link
G MAPK14 mitogen-activated protein kinase 14 involved_in TAS (PMID:20932473) UniProt PMID:20932473 NCBI chr 6:36,027,711...36,122,964
Ensembl chr 6:36,027,677...36,111,236
JBrowse link
G MAPKAPK2 MAPK activated protein kinase 2 involved_in IDA (PMID:14517288), (PMID:15014438), (PMID:20932473) UniProt PMID:14517288 PMID:15014438 PMID:20932473 NCBI chr 1:206,684,905...206,734,283
Ensembl chr 1:206,684,905...206,734,281
JBrowse link
G MYD88 MYD88 innate immune signal transduction adaptor involved_in IDA (PMID:15294994) BHF-UCL PMID:15294994 NCBI chr 3:38,138,661...38,143,022
Ensembl chr 3:38,138,478...38,143,022
JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:11696543 RGD:10045987 NCBI chr19:797,452...812,316
Ensembl chr19:797,075...812,327
JBrowse link
G RBM10 RNA binding motif protein 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4367529|PMID:19508861) Ensembl
MGI
PMID:19508861 GO_REF:0000107 MGI:4367529 NCBI chr  X:47,145,196...47,186,813
Ensembl chr  X:47,145,221...47,186,813
JBrowse link
G RBM38 RNA binding motif protein 38 involved_in IDA (PMID:17050675) UniProt PMID:17050675 NCBI chr20:57,391,396...57,409,333
Ensembl chr20:57,391,396...57,409,333
JBrowse link
G TARDBP TAR DNA binding protein involved_in IDA (PMID:17481916) BHF-UCL PMID:17481916 NCBI chr 1:11,012,654...11,030,528
Ensembl chr 1:11,012,344...11,030,528
JBrowse link
G TIRAP TIR domain containing adaptor protein involved_in IDA (PMID:15294994) BHF-UCL PMID:15294994 NCBI chr11:126,283,093...126,294,933
Ensembl chr11:126,283,065...126,298,845
JBrowse link
G YBX3 Y-box binding protein 3 involved_in IC (PMID:22711822) BHF-UCL PMID:22711822 NCBI chr12:10,699,084...10,723,442
Ensembl chr12:10,699,089...10,723,323
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IDA (PMID:15014438) UniProt PMID:15014438 NCBI chr19:39,406,847...39,409,407
Ensembl chr19:39,406,847...39,409,412
JBrowse link
co-transcriptional gene silencing by RNA interference machinery term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHASERR CHD2 adjacent suppressive regulatory RNA involved_in ISO (MGI:5901794|PMID:27783602) MGI PMID:27783602 MGI:5901794 NCBI chr15:92,882,843...92,898,747
Ensembl chr15:92,819,540...92,899,701
JBrowse link
conversion of ds siRNA to ss siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DICER1 dicer 1, ribonuclease III involved_in IMP (PMID:19701182) BHF-UCL PMID:19701182 NCBI chr14:95,086,228...95,158,263
Ensembl chr14:95,086,228...95,158,010
JBrowse link
CRD-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSDE1 cold shock domain containing E1 involved_in IDA (PMID:11051545) ComplexPortal PMID:11051545 NCBI chr 1:114,716,916...114,757,984
Ensembl chr 1:114,716,913...114,758,676
JBrowse link
G DHX9 DExH-box helicase 9 involved_in IMP
IDA
(PMID:19029303) UniProt
ComplexPortal
PMID:19029303 NCBI chr 1:182,839,347...182,887,982
Ensembl chr 1:182,839,347...182,887,982
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D involved_in IDA (PMID:11051545) ComplexPortal PMID:11051545 NCBI chr 4:82,352,498...82,373,991
Ensembl chr 4:82,352,498...82,374,503
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in IBA
IDA
IMP
(PMID:21873635)
(PMID:19029303)
GO_Central
ComplexPortal
UniProt
PMID:19029303 PMID:21873635 NCBI chr 1:244,850,297...244,864,543
Ensembl chr 1:244,840,638...244,864,560
JBrowse link
G IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 involved_in IDA (PMID:19029303) UniProt PMID:19029303 NCBI chr17:48,997,385...49,056,145
Ensembl chr17:48,997,385...49,056,145
JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in IDA (PMID:11051545) ComplexPortal PMID:11051545 NCBI chr 8:100,702,916...100,722,088
Ensembl chr 8:100,685,816...100,722,809
JBrowse link
G PAIP1 poly(A) binding protein interacting protein 1 involved_in IDA (PMID:11051545) ComplexPortal PMID:11051545 NCBI chr 5:43,526,267...43,557,411
Ensembl chr 5:43,526,267...43,557,758
JBrowse link
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein involved_in IBA
IDA
IMP
(PMID:21873635)
(PMID:11051545), (PMID:19029303)
(PMID:19029303)
GO_Central
ComplexPortal
UniProt
PMID:11051545 PMID:19029303 PMID:21873635 NCBI chr 6:85,607,784...85,643,862
Ensembl chr 6:85,607,779...85,644,063
JBrowse link
G YBX1 Y-box binding protein 1 involved_in IMP
IDA
(PMID:19029303) UniProt
ComplexPortal
PMID:19029303 NCBI chr 1:42,682,418...42,703,805
Ensembl chr 1:42,682,418...42,703,805
JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807625|PMID:18625844) Ensembl
MGI
PMID:18625844 GO_REF:0000107 MGI:3807625 NCBI chr 8:17,221,981...17,246,857
Ensembl chr 8:17,224,966...17,246,878
JBrowse link
G DCP1A decapping mRNA 1A involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 3:53,283,429...53,347,543
Ensembl chr 3:53,283,429...53,347,586
JBrowse link
G DCP1B decapping mRNA 1B involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr12:1,941,591...2,004,457
Ensembl chr12:1,946,053...2,004,535
JBrowse link
G DCP2 decapping mRNA 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:112,976,702...113,022,195
Ensembl chr 5:112,976,702...113,022,195
JBrowse link
G DCPS decapping enzyme, scavenger involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr11:126,304,060...126,350,005
Ensembl chr11:126,304,060...126,350,005
JBrowse link
G LSM1 LSM1 homolog, mRNA degradation associated involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:38,163,321...38,176,730
Ensembl chr 8:38,163,335...38,176,730
JBrowse link
G NOCT nocturnin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807625|PMID:18625844) Ensembl
MGI
PMID:18625844 GO_REF:0000107 MGI:3807625 NCBI chr 4:139,015,781...139,045,939
Ensembl chr 4:139,015,781...139,045,939
JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chr13:28,135,021...28,295,335
Ensembl chr13:28,138,506...28,295,335
JBrowse link
G PATL1 PAT1 homolog 1, processing body mRNA decay factor involved_in IBA
IDA
(PMID:21873635)
(PMID:20584987), (PMID:20852261)
GO_Central
UniProt
PMID:20584987 PMID:20852261 PMID:21873635 NCBI chr11:59,636,716...59,669,037
Ensembl chr11:59,636,716...59,669,037
JBrowse link
G PATL2 PAT1 homolog 2 involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr15:44,665,732...44,711,406
Ensembl chr15:44,665,732...44,711,323
JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCP1A decapping mRNA 1A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:53,283,429...53,347,543
Ensembl chr 3:53,283,429...53,347,586
JBrowse link
G DCP1B decapping mRNA 1B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:1,941,591...2,004,457
Ensembl chr12:1,946,053...2,004,535
JBrowse link
G EDC3 enhancer of mRNA decapping 3 involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr15:74,630,558...74,696,434
Ensembl chr15:74,630,558...74,696,292
JBrowse link
G EDC4 enhancer of mRNA decapping 4 involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr16:67,873,052...67,884,499
Ensembl chr16:67,873,052...67,884,499
JBrowse link
G PNRC2 proline rich nuclear receptor coactivator 2 involved_in TAS (PMID:19150429) UniProt PMID:19150429 NCBI chr 1:23,959,164...23,963,462
Ensembl chr 1:23,956,839...23,963,462
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:10,133,346...10,194,953
Ensembl chr19:10,133,342...10,231,286
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3611125|PMID:16322236)
(MGI:3768461|PMID:17938196)
Ensembl
MGI
PMID:16322236 PMID:17938196 GO_REF:0000107 MGI:3611125 MGI:3768461 NCBI chr 2:25,227,874...25,342,590
Ensembl chr 2:25,227,855...25,342,590
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:3768461 NCBI chr20:32,762,385...32,809,356
Ensembl chr20:32,762,385...32,809,356
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IGI (PMID:23770133) BHF-UCL PMID:23770133 NCBI chr 1:32,292,083...32,333,628
Ensembl chr 1:32,292,083...32,333,635
JBrowse link
G HELLS helicase, lymphoid specific involved_in IBA
ISS
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000024 NCBI chr10:94,545,778...94,613,905
Ensembl chr10:94,501,434...94,613,905
JBrowse link
G KMT2B lysine methyltransferase 2B acts_upstream_of_or_within ISO (MGI:4849597|PMID:20808952) MGI PMID:20808952 MGI:4849597 NCBI chr19:35,717,818...35,738,878
Ensembl chr19:35,717,973...35,738,878
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 involved_in IGI (PMID:23770133) BHF-UCL PMID:23770133 NCBI chr18:54,151,606...54,224,669
Ensembl chr18:54,151,606...54,224,669
JBrowse link
G MBD3 methyl-CpG binding domain protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3611125|PMID:16322236) Ensembl
MGI
PMID:16322236 GO_REF:0000107 MGI:3611125 NCBI chr19:1,573,596...1,592,865
Ensembl chr19:1,573,596...1,592,865
JBrowse link
G SIRT1 sirtuin 1 involved_in TAS (PMID:21947282) UniProt PMID:21947282 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr19:10,960,999...11,062,277
Ensembl chr19:10,960,932...11,079,426
JBrowse link
exonucleolytic catabolism of deadenylated mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT6 CCR4-NOT transcription complex subunit 6 involved_in IDA (PMID:20065043) UniProt PMID:20065043 NCBI chr 5:180,494,373...180,578,358
Ensembl chr 5:180,494,379...180,578,358
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IDA
IBA
(PMID:20065043), (PMID:21336257)
(PMID:21873635)
UniProt
GO_Central
PMID:20065043 PMID:21336257 PMID:21873635 NCBI chr 8:17,221,981...17,246,857
Ensembl chr 8:17,224,966...17,246,878
JBrowse link
G CNOT8 CCR4-NOT transcription complex subunit 8 involved_in IDA
IBA
(PMID:20065043)
(PMID:21873635)
UniProt
GO_Central
PMID:20065043 PMID:21873635 NCBI chr 5:154,857,952...154,876,792
Ensembl chr 5:154,857,553...154,876,792
JBrowse link
G DCP2 decapping mRNA 2 involved_in TAS Reactome Reactome:R-HSA-430039 NCBI chr 5:112,976,702...113,022,195
Ensembl chr 5:112,976,702...113,022,195
JBrowse link
G DCPS decapping enzyme, scavenger involved_in TAS Reactome Reactome:R-HSA-429958 NCBI chr11:126,304,060...126,350,005
Ensembl chr11:126,304,060...126,350,005
JBrowse link
G DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in TAS Reactome Reactome:R-HSA-429958 NCBI chr13:72,752,169...72,781,900
Ensembl chr13:72,752,169...72,782,096
JBrowse link
G EXOSC2 exosome component 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:130,693,760...130,704,894
Ensembl chr 9:130,693,721...130,704,894
JBrowse link
G EXOSC3 exosome component 3 involved_in IBA
IMP
(PMID:21873635)
(PMID:11782436)
GO_Central
UniProt
PMID:11782436 PMID:21873635 NCBI chr 9:37,779,714...37,785,092
Ensembl chr 9:37,759,234...37,832,117
JBrowse link
G EXOSC5 exosome component 5 involved_in IMP (PMID:11782436) UniProt PMID:11782436 NCBI chr19:41,386,374...41,397,359
Ensembl chr19:41,386,374...41,397,359
JBrowse link
G EXOSC7 exosome component 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:44,975,291...45,012,668
Ensembl chr 3:44,975,241...45,036,066
JBrowse link
G EXOSC8 exosome component 8 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:37,000,373...37,009,614
Ensembl chr13:36,998,816...37,009,614
JBrowse link
G EXOSC9 exosome component 9 involved_in IMP
IBA
(PMID:11782436)
(PMID:21873635)
UniProt
GO_Central
PMID:11782436 PMID:21873635 NCBI chr 4:121,801,323...121,817,021
Ensembl chr 4:121,801,318...121,817,021
JBrowse link
G NT5C3B 5'-nucleotidase, cytosolic IIIB involved_in TAS Reactome Reactome:R-HSA-429958 NCBI chr17:41,825,057...41,836,276
Ensembl chr17:41,825,057...41,836,260
JBrowse link
gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AJUBA ajuba LIM protein acts_upstream_of_or_within IMP (PMID:20616046) MGI PMID:20616046 NCBI chr14:22,971,177...22,982,551
Ensembl chr14:22,971,177...22,982,551
JBrowse link
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in IDA (PMID:23172285), (PMID:24768540) BHF-UCL PMID:23172285 PMID:24768540 NCBI chr16:58,519,951...58,629,826
Ensembl chr16:58,519,951...58,629,885
JBrowse link
G CNOT6 CCR4-NOT transcription complex subunit 6 involved_in TAS (PMID:20065043) UniProt PMID:20065043 NCBI chr 5:180,494,373...180,578,358
Ensembl chr 5:180,494,379...180,578,358
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in TAS (PMID:20065043) UniProt PMID:20065043 NCBI chr 8:17,221,981...17,246,857
Ensembl chr 8:17,224,966...17,246,878
JBrowse link
G CNOT8 CCR4-NOT transcription complex subunit 8 involved_in TAS (PMID:20065043) UniProt PMID:20065043 NCBI chr 5:154,857,952...154,876,792
Ensembl chr 5:154,857,553...154,876,792
JBrowse link
G EIF6 eukaryotic translation initiation factor 6 involved_in IMP (PMID:17507929) UniProt PMID:17507929 NCBI chr20:35,278,906...35,284,772
Ensembl chr20:35,278,907...35,284,985
JBrowse link
G LIMD1 LIM domain containing 1 acts_upstream_of_or_within IMP (PMID:20616046) MGI PMID:20616046 NCBI chr 3:45,594,105...45,686,341
Ensembl chr 3:45,555,394...45,686,341
JBrowse link
G MIR1-1 microRNA 1-1 acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) MGI PMID:15361871 MGI:3510301 NCBI chr20:62,554,306...62,554,376
Ensembl chr20:62,554,306...62,554,376
JBrowse link
G MIR1-2 microRNA 1-2 acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871)
(MGI:5575655|PMID:17397913)
MGI PMID:15361871 PMID:17397913 MGI:3510301 MGI:5575655 NCBI chr18:21,829,004...21,829,088
Ensembl chr18:21,829,004...21,829,088
JBrowse link
G MIR100 microRNA 100 acts_upstream_of_or_within ISO (MGI:4822296|PMID:20439489) MGI PMID:20439489 MGI:4822296 NCBI chr11:122,152,229...122,152,308
Ensembl chr11:122,152,229...122,152,308
JBrowse link
G MIR107 microRNA 107 acts_upstream_of_or_within ISO (MGI:5013695|PMID:21415270) MGI PMID:21415270 MGI:5013695 NCBI chr10:89,592,747...89,592,827
Ensembl chr10:89,592,747...89,592,827
JBrowse link
G MIR10A microRNA 10a acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) MGI PMID:15361871 MGI:3510301 NCBI chr17:48,579,838...48,579,947
Ensembl chr17:48,579,838...48,579,947
JBrowse link
G MIR124-1 microRNA 124-1 acts_upstream_of_or_within ISO (MGI:3706460|PMID:17403776)
(MGI:3706460|PMID:17403776), (MGI:4438512|PMID:19898466), (MGI:5303045|PMID:21857657)
MGI PMID:17403776 PMID:19898466 PMID:21857657 MGI:3706460 MGI:4438512 MGI:5303045 NCBI chr 8:9,903,388...9,903,472
Ensembl chr 8:9,903,388...9,903,472
JBrowse link
G MIR124-1HG MIR124-1 host gene acts_upstream_of_or_within ISO (MGI:5528923|PMID:23946534) MGI PMID:23946534 MGI:5528923 NCBI chr 8:9,900,064...9,903,329
Ensembl chr 8:9,899,871...9,906,678
JBrowse link
G MIR124-2 microRNA 124-2 acts_upstream_of_or_within ISO (MGI:3706460|PMID:17403776)
(MGI:3706460|PMID:17403776), (MGI:4438512|PMID:19898466), (MGI:5303045|PMID:21857657)
MGI PMID:17403776 PMID:19898466 PMID:21857657 MGI:3706460 MGI:4438512 MGI:5303045 NCBI chr 8:64,379,149...64,379,257
Ensembl chr 8:64,379,149...64,379,257
JBrowse link
G MIR124-3 microRNA 124-3 acts_upstream_of_or_within ISO (MGI:3706460|PMID:17403776)
(MGI:3706460|PMID:17403776), (MGI:4438512|PMID:19898466), (MGI:5303045|PMID:21857657)
MGI PMID:17403776 PMID:19898466 PMID:21857657 MGI:3706460 MGI:4438512 MGI:5303045 NCBI chr20:63,178,500...63,178,586
Ensembl chr20:63,178,500...63,178,586
JBrowse link
G MIR125A microRNA 125a acts_upstream_of_or_within ISO (MGI:4438512|PMID:19898466) MGI PMID:19898466 MGI:4438512 NCBI chr19:51,693,254...51,693,339
Ensembl chr19:51,693,254...51,693,339
JBrowse link
G MIR125B1 microRNA 125b-1 involved_in ISO (MGI:5882697|PMID:28281528) MGI PMID:28281528 MGI:5882697 NCBI chr11:122,099,757...122,099,844
Ensembl chr11:122,099,757...122,099,844
JBrowse link
G MIR125B2 microRNA 125b-2 involved_in ISO (MGI:5882697|PMID:28281528) MGI PMID:28281528 MGI:5882697 NCBI chr21:16,590,237...16,590,325
Ensembl chr21:16,590,237...16,590,325
JBrowse link
G MIR133A1 microRNA 133a-1 acts_upstream_of_or_within ISO (MGI:3820745|PMID:19015276) MGI PMID:19015276 MGI:3820745 NCBI chr18:21,825,698...21,825,785
Ensembl chr18:21,825,698...21,825,785
JBrowse link
G MIR133A2 microRNA 133a-2 acts_upstream_of_or_within ISO (MGI:3820745|PMID:19015276) MGI PMID:19015276 MGI:3820745 NCBI chr20:62,564,912...62,565,013
Ensembl chr20:62,564,912...62,565,013
JBrowse link
G MIR137 microRNA 137 acts_upstream_of_or_within ISO (MGI:4822296|PMID:20439489) MGI PMID:20439489 MGI:4822296 NCBI chr 1:98,046,070...98,046,171
Ensembl chr 1:98,046,070...98,046,171
JBrowse link
G MIR155 microRNA 155 acts_upstream_of_or_within ISO (MGI:4833768|PMID:20548288) MGI PMID:20548288 MGI:4833768 NCBI chr21:25,573,980...25,574,044
Ensembl chr21:25,573,980...25,574,044
JBrowse link
G MIR17 microRNA 17 acts_upstream_of_or_within ISO (MGI:5140688|PMID:21338882) MGI PMID:21338882 MGI:5140688 NCBI chr13:91,350,605...91,350,688
Ensembl chr13:91,350,605...91,350,688
JBrowse link
G MIR182 microRNA 182 acts_upstream_of_or_within ISO (MGI:6108693|PMID:28819115) MGI PMID:28819115 MGI:6108693 NCBI chr 7:129,770,383...129,770,492
Ensembl chr 7:129,770,383...129,770,492
JBrowse link
G MIR183 microRNA 183 acts_upstream_of_or_within ISO (MGI:6108693|PMID:28819115) MGI PMID:28819115 MGI:6108693 NCBI chr 7:129,774,905...129,775,014
Ensembl chr 7:129,774,905...129,775,014
JBrowse link
G MIR196A1 microRNA 196a-1 acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) MGI PMID:15361871 MGI:3510301 NCBI chr17:48,632,490...48,632,559
Ensembl chr17:48,632,490...48,632,559
JBrowse link
G MIR196A2 microRNA 196a-2 acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) MGI PMID:15361871 MGI:3510301 NCBI chr12:53,991,738...53,991,847
Ensembl chr12:53,991,738...53,991,847
JBrowse link
G MIR200B microRNA 200b acts_upstream_of_or_within ISO (MGI:5013695|PMID:21415270) MGI PMID:21415270 MGI:5013695 NCBI chr 1:1,167,104...1,167,198
Ensembl chr 1:1,167,104...1,167,198
JBrowse link
G MIR203B microRNA 203b acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr14:104,117,418...104,117,503
Ensembl chr14:104,117,418...104,117,503
JBrowse link
G MIR205 microRNA 205 acts_upstream_of_or_within ISO (MGI:5514438|PMID:23974039) MGI PMID:23974039 MGI:5514438 NCBI chr 1:209,432,133...209,432,242
Ensembl chr 1:209,432,133...209,432,242
JBrowse link
G MIR21 microRNA 21 acts_upstream_of_or_within
involved_in
ISO (MGI:5693365|PMID:19147652)
(MGI:6208917|PMID:29925839)
MGI PMID:19147652 PMID:29925839 MGI:5693365 MGI:6208917 NCBI chr17:59,841,266...59,841,337
Ensembl chr17:59,841,266...59,841,337
JBrowse link
G MIR214 microRNA 214 acts_upstream_of_or_within ISO (MGI:4839883|PMID:20534588) MGI PMID:20534588 MGI:4839883 NCBI chr 1:172,138,798...172,138,907
Ensembl chr 1:172,138,798...172,138,907
JBrowse link
G MIR223 microRNA 223 acts_upstream_of_or_within ISO (MGI:3811177|PMID:18278031) MGI PMID:18278031 MGI:3811177 NCBI chr  X:66,018,870...66,018,979
Ensembl chr  X:66,018,870...66,018,979
JBrowse link
G MIR23A microRNA 23a acts_upstream_of_or_within ISO (MGI:5516374|PMID:24101522) MGI PMID:24101522 MGI:5516374 NCBI chr19:13,836,587...13,836,659
Ensembl chr19:13,836,587...13,836,659
JBrowse link
G MIR26A1 microRNA 26a-1 acts_upstream_of_or_within ISO (MGI:5494382|PMID:22210897) MGI PMID:22210897 MGI:5494382 NCBI chr 3:37,969,404...37,969,480
Ensembl chr 3:37,969,404...37,969,480
JBrowse link
G MIR26A2 microRNA 26a-2 acts_upstream_of_or_within ISO (MGI:5494382|PMID:22210897) MGI PMID:22210897 MGI:5494382 NCBI chr12:57,824,609...57,824,692
Ensembl chr12:57,824,609...57,824,692
JBrowse link
G MIR26B microRNA 26b acts_upstream_of_or_within ISO (MGI:5494382|PMID:22210897) MGI PMID:22210897 MGI:5494382 NCBI chr 2:218,402,646...218,402,722
Ensembl chr 2:218,402,646...218,402,722
JBrowse link
G MIR301A microRNA 301a acts_upstream_of_or_within ISO (MGI:5426073|PMID:22517757) MGI PMID:22517757 MGI:5426073 NCBI chr17:59,151,136...59,151,221
Ensembl chr17:59,151,136...59,151,221
JBrowse link
G MIR30A microRNA 30a acts_upstream_of_or_within ISO (MGI:3838679|PMID:19185580) MGI PMID:19185580 MGI:3838679 NCBI chr 6:71,403,551...71,403,621
Ensembl chr 6:71,403,551...71,403,621
JBrowse link
G MIR324 microRNA 324 acts_upstream_of_or_within ISO (MGI:5576401|PMID:24882011) MGI PMID:24882011 MGI:5576401 NCBI chr17:7,223,297...7,223,379
Ensembl chr17:7,223,297...7,223,379
JBrowse link
G MIR34A microRNA 34a acts_upstream_of_or_within ISO (MGI:4822296|PMID:20439489), (MGI:5613071|PMID:25043055)
(MGI:5613071|PMID:25043055)
MGI PMID:20439489 PMID:25043055 MGI:4822296 MGI:5613071 NCBI chr 1:9,151,668...9,151,777
Ensembl chr 1:9,151,668...9,151,777
JBrowse link
G MIR423 microRNA 423 involved_in ISO (MGI:5922106|PMID:28411267) MGI PMID:28411267 MGI:5922106 NCBI chr17:30,117,079...30,117,172
Ensembl chr17:30,117,079...30,117,172
JBrowse link
G MIR489 microRNA 489 acts_upstream_of_or_within ISO (MGI:5312165|PMID:22358842) MGI PMID:22358842 MGI:5312165 NCBI chr 7:93,483,936...93,484,019
Ensembl chr 7:93,483,936...93,484,019
JBrowse link
G MIR494 microRNA 494 acts_upstream_of_or_within ISO (MGI:5302482|PMID:20837890) MGI PMID:20837890 MGI:5302482 NCBI chr14:101,029,634...101,029,714
Ensembl chr14:101,029,634...101,029,714
JBrowse link
G MIR495 microRNA 495 acts_upstream_of_or_within ISO (MGI:5013695|PMID:21415270) MGI PMID:21415270 MGI:5013695 NCBI chr14:101,033,755...101,033,836
Ensembl chr14:101,033,755...101,033,836
JBrowse link
G MIR504 microRNA 504 involved_in ISO (MGI:5921469|PMID:26941017) MGI PMID:26941017 MGI:5921469 NCBI chr  X:138,667,711...138,667,793
Ensembl chr  X:138,667,711...138,667,793
JBrowse link
G MIR511 microRNA 511 acts_upstream_of_or_within ISO (MGI:5486412|PMID:22832163) MGI PMID:22832163 MGI:5486412 NCBI chr10:17,845,107...17,845,193
Ensembl chr10:17,845,107...17,845,193
JBrowse link
G MIR668 microRNA 668 acts_upstream_of_or_within ISO (MGI:6276530|PMID:30325740) MGI PMID:30325740 MGI:6276530 NCBI chr14:101,055,258...101,055,323
Ensembl chr14:101,055,258...101,055,323
JBrowse link
G MIR7-1 microRNA 7-1 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr 9:83,969,748...83,969,857
Ensembl chr 9:83,969,748...83,969,857
JBrowse link
G MIR873 microRNA 873 acts_upstream_of_or_within ISO (MGI:6103206|PMID:28837808) MGI PMID:28837808 MGI:6103206 NCBI chr 9:28,888,879...28,888,955
Ensembl chr 9:28,888,879...28,888,955
JBrowse link
G MIR874 microRNA 874 acts_upstream_of_or_within ISO (MGI:5551666|PMID:24462679) MGI PMID:24462679 MGI:5551666 NCBI chr 5:137,647,572...137,647,649
Ensembl chr 5:137,647,572...137,647,649
JBrowse link
G MIR96 microRNA 96 acts_upstream_of_or_within ISO (MGI:6108693|PMID:28819115) MGI PMID:28819115 MGI:6108693 NCBI chr 7:129,774,692...129,774,769
Ensembl chr 7:129,774,692...129,774,769
JBrowse link
G MIRLET7A1 microRNA let-7a-1 acts_upstream_of_or_within ISO (MGI:5461254|PMID:23152446)
(MGI:4438512|PMID:19898466)
MGI PMID:19898466 PMID:23152446 MGI:4438512 MGI:5461254 NCBI chr 9:94,175,957...94,176,036
Ensembl chr 9:94,175,957...94,176,036
JBrowse link
G MIRLET7A2 microRNA let-7a-2 acts_upstream_of_or_within ISO (MGI:5461254|PMID:23152446) MGI PMID:23152446 MGI:5461254 NCBI chr11:122,146,522...122,146,593
Ensembl chr11:122,146,522...122,146,593
JBrowse link
G MIRLET7A3 microRNA let-7a-3 acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) MGI PMID:15361871 MGI:3510301 NCBI chr22:46,112,749...46,112,822
Ensembl chr22:46,112,749...46,112,822
JBrowse link
G MIRLET7B microRNA let-7b acts_upstream_of_or_within ISO (MGI:5461254|PMID:23152446) MGI PMID:23152446 MGI:5461254 NCBI chr22:46,113,686...46,113,768
Ensembl chr22:46,113,686...46,113,768
JBrowse link
G MIRLET7C microRNA let-7c acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) MGI PMID:15361871 MGI:3510301 NCBI chr21:16,539,828...16,539,911
Ensembl chr21:16,539,828...16,539,911
JBrowse link
G MIRLET7E microRNA let-7e acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871), (MGI:4438512|PMID:19898466) MGI PMID:15361871 PMID:19898466 MGI:3510301 MGI:4438512 NCBI chr19:51,692,786...51,692,864
Ensembl chr19:51,692,786...51,692,864
JBrowse link
G MOV10 Mov10 RISC complex RNA helicase involved_in IMP (PMID:17507929) UniProt PMID:17507929 NCBI chr 1:112,674,427...112,702,377
Ensembl chr 1:112,673,141...112,700,746
JBrowse link
G TNRC6A trinucleotide repeat containing adaptor 6A involved_in IBA
IMP
(PMID:21873635)
(PMID:23172285)
GO_Central
BHF-UCL
PMID:21873635 PMID:23172285 NCBI chr16:24,610,205...24,826,223
Ensembl chr16:24,610,209...24,827,632
JBrowse link
G TNRC6B trinucleotide repeat containing adaptor 6B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:40,044,834...40,335,808
Ensembl chr22:40,044,817...40,335,808
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C involved_in IBA
IGI
(PMID:21873635)
(PMID:23172285)
GO_Central
BHF-UCL
PMID:21873635 PMID:23172285 NCBI chr17:77,958,853...78,108,835
Ensembl chr17:77,959,240...78,108,835
JBrowse link
G WTIP WT1 interacting protein acts_upstream_of_or_within IMP (PMID:20616046) MGI PMID:20616046 NCBI chr19:34,481,758...34,512,304
Ensembl chr19:34,481,758...34,512,304
JBrowse link
gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO1 argonaute RISC component 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:35,869,761...35,930,532
Ensembl chr 1:35,869,808...35,930,532
JBrowse link
G AGO2 argonaute RISC catalytic component 2 involved_in ISS
IEA
UniProt GO_REF:0000024 GO_REF:0000043 NCBI chr 8:140,520,156...140,642,406
Ensembl chr 8:140,520,156...140,635,633
JBrowse link
G AGO3 argonaute RISC catalytic component 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:35,925,683...36,072,500
Ensembl chr 1:35,930,718...36,072,500
JBrowse link
G ASZ1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:117,363,222...117,427,493
Ensembl chr 7:117,363,222...117,428,123
JBrowse link
G CNOT10 CCR4-NOT transcription complex subunit 10 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 3:32,685,188...32,773,875
Ensembl chr 3:32,685,145...32,773,875
JBrowse link
G CNOT11 CCR4-NOT transcription complex subunit 11 involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:101,252,886...101,270,316
Ensembl chr 2:101,252,886...101,270,316
JBrowse link
G CNOT2 CCR4-NOT transcription complex subunit 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr12:70,242,993...70,354,993
Ensembl chr12:70,243,002...70,354,993
JBrowse link
G CNOT3 CCR4-NOT transcription complex subunit 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr19:54,137,689...54,155,690
Ensembl chr19:54,137,749...54,155,681
JBrowse link
G CNOT6L CCR4-NOT transcription complex subunit 6 like involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:77,713,387...77,820,269
Ensembl chr 4:77,713,387...77,819,615
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in ISS UniProt GO_REF:0000024 NCBI chr 8:17,221,981...17,246,857
Ensembl chr 8:17,224,966...17,246,878
JBrowse link
G CNOT9 CCR4-NOT transcription complex subunit 9 involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:218,568,578...218,597,080
Ensembl chr 2:218,568,580...218,597,080
JBrowse link
G DDX17 DEAD-box helicase 17 involved_in IEA UniProt GO_REF:0000043 NCBI chr22:38,483,438...38,506,311
Ensembl chr22:38,483,438...38,507,660
JBrowse link
G DDX4 DEAD-box helicase 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:55,737,994...55,817,157
Ensembl chr 5:55,738,017...55,817,157
JBrowse link
G DICER1 dicer 1, ribonuclease III involved_in IEA UniProt GO_REF:0000043 NCBI chr14:95,086,228...95,158,263
Ensembl chr14:95,086,228...95,158,010
JBrowse link
G EIF4E2 eukaryotic translation initiation factor 4E family member 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:232,550,689...232,583,644
Ensembl chr 2:232,550,674...232,583,644
JBrowse link
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr22:31,434,648...31,489,950
Ensembl chr22:31,436,977...31,496,108
JBrowse link
G ERI1 exoribonuclease 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:8,892,225...9,100,262
Ensembl chr 8:9,002,147...9,116,746
JBrowse link
G EXD1 exonuclease 3'-5' domain containing 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr15:41,182,728...41,231,074
Ensembl chr15:41,182,725...41,230,757
JBrowse link
G FKBP6 FKBP prolyl isomerase family member 6 (inactive) involved_in ISS
IEA
UniProt GO_REF:0000024 GO_REF:0000043 NCBI chr 7:73,328,154...73,358,625
Ensembl chr 7:73,328,161...73,358,637
JBrowse link
G FMR1 FMRP translational regulator 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:147,911,919...147,951,125
Ensembl chr  X:147,911,919...147,951,125
JBrowse link
G LIN28B lin-28 homolog B involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:104,936,999...105,083,332
Ensembl chr 6:104,936,616...105,083,332
JBrowse link
G MAEL maelstrom spermatogenic transposon silencer involved_in IEA
ISS
UniProt GO_REF:0000024 GO_REF:0000043 NCBI chr 1:166,921,121...167,022,214
Ensembl chr 1:166,975,582...167,022,214
JBrowse link
G MORC1 MORC family CW-type zinc finger 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:108,958,248...109,118,134
Ensembl chr 3:108,958,248...109,118,134
JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 8:100,702,916...100,722,088
Ensembl chr 8:100,685,816...100,722,809
JBrowse link
G PIWIL1 piwi like RNA-mediated gene silencing 1 involved_in ISS
IEA
UniProt GO_REF:0000024 GO_REF:0000043 NCBI chr12:130,337,887...130,412,708
Ensembl chr12:130,337,887...130,372,637
JBrowse link
G PIWIL2 piwi like RNA-mediated gene silencing 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 8:22,275,314...22,357,568
Ensembl chr 8:22,275,316...22,357,568
JBrowse link
G PIWIL3 piwi like RNA-mediated gene silencing 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr22:24,719,034...24,774,720
Ensembl chr22:24,719,034...24,774,720
JBrowse link
G PIWIL4 piwi like RNA-mediated gene silencing 4 involved_in ISS
IEA
UniProt GO_REF:0000024 GO_REF:0000043 NCBI chr11:94,567,368...94,621,421
Ensembl chr11:94,543,840...94,621,421
JBrowse link
G PTPN13 protein tyrosine phosphatase non-receptor type 13 involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:86,594,307...86,815,172
Ensembl chr 4:86,594,315...86,815,171
JBrowse link
G SND1 staphylococcal nuclease and tudor domain containing 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:127,652,145...128,092,593
Ensembl chr 7:127,652,194...128,092,609
JBrowse link
G SPOCD1 SPOC domain containing 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:31,790,422...31,816,022
Ensembl chr 1:31,790,422...31,816,051
JBrowse link
G SRRT serrate, RNA effector molecule involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:100,874,971...100,888,664
Ensembl chr 7:100,875,103...100,888,664
JBrowse link
G TARBP2 TARBP2 subunit of RISC loading complex involved_in IEA UniProt GO_REF:0000043 NCBI chr12:53,500,923...53,506,431
Ensembl chr12:53,500,921...53,506,431
JBrowse link
G TDRD1 tudor domain containing 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr10:114,174,442...114,232,669
Ensembl chr10:114,179,270...114,232,304
JBrowse link
G TDRD12 tudor domain containing 12 involved_in ISS
IEA
UniProt GO_REF:0000024 GO_REF:0000043 NCBI chr19:32,719,767...32,829,580
Ensembl chr19:32,719,753...32,829,580
JBrowse link
G TDRD9 tudor domain containing 9 involved_in IEA UniProt GO_REF:0000043 NCBI chr14:103,928,343...104,052,667
Ensembl chr14:103,928,456...104,052,667
JBrowse link
G TDRKH tudor and KH domain containing involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:151,769,433...151,790,534
Ensembl chr 1:151,770,107...151,791,416
JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:30,831,544...30,913,008
Ensembl chr 8:30,831,544...30,913,008
JBrowse link
G TNRC6B trinucleotide repeat containing adaptor 6B involved_in IMP (PMID:19716330) UniProt PMID:19716330 NCBI chr22:40,044,834...40,335,808
Ensembl chr22:40,044,817...40,335,808
JBrowse link
gene silencing by RNA-directed DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KCNQ1OT1 KCNQ1 opposite strand/antisense transcript 1 acts_upstream_of_or_within ISO (MGI:4830046|PMID:20573698)
(MGI:3054495|PMID:15340049)
MGI PMID:15340049 PMID:20573698 MGI:3054495 MGI:4830046 NCBI chr11:2,608,328...2,699,998
Ensembl chr11:2,608,328...2,699,994
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAHD1 bromo adjacent homology domain containing 1 involved_in IMP (PMID:19666599) UniProt PMID:19666599 NCBI chr15:40,439,757...40,468,237
Ensembl chr15:40,439,721...40,468,236
JBrowse link
G BAZ2A bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within ISO (MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
MGI PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chr12:56,595,596...56,636,816
Ensembl chr12:56,595,596...56,636,816
JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:22,321,099...22,331,484
Ensembl chr10:22,321,099...22,331,484
JBrowse link
G CBX3 chromobox 3 involved_in IDA (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr 7:26,201,443...26,213,607
Ensembl chr 7:26,201,162...26,213,607
JBrowse link
G COMMD3-BMI1 COMMD3-BMI1 readthrough involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:22,316,388...22,331,484
Ensembl chr10:22,316,388...22,329,542
JBrowse link
G CTBP1 C-terminal binding protein 1 involved_in IMP (PMID:21102443) BHF-UCL PMID:21102443 NCBI chr 4:1,211,444...1,250,355
Ensembl chr 4:1,211,445...1,249,953
JBrowse link
G EED embryonic ectoderm development involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:86,244,753...86,285,420
Ensembl chr11:86,244,753...86,278,813
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISS (PMID:19026781) ARUK-UCL PMID:19026781 NCBI chr17:42,700,275...42,745,078
Ensembl chr17:42,700,275...42,745,049
JBrowse link
G H1-0 H1.0 linker histone involved_in IGI (PMID:19158276) UniProt PMID:19158276 NCBI chr22:37,805,229...37,807,432
Ensembl chr22:37,805,229...37,807,432
JBrowse link
G H1-9P H1.9 linker histone, pseudogene involved_in IDA (PMID:12920187) UniProt PMID:12920187 NCBI chr17:50,171,428...50,172,476
Ensembl chr17:50,171,428...50,181,178
JBrowse link
G H2AB1 H2A.B variant histone 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:154,884,972...154,885,558
Ensembl chr  X:154,884,972...154,885,558
JBrowse link
G H2AB2 H2A.B variant histone 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:155,380,709...155,381,299
Ensembl chr  X:155,380,709...155,381,299
JBrowse link
G H2AB3 H2A.B variant histone 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:155,459,415...155,460,005
Ensembl chr  X:155,459,415...155,460,005
JBrowse link
G H2AC1 H2A clustered histone 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:25,726,063...25,726,562
Ensembl chr 6:25,726,063...25,726,562
JBrowse link
G H2AC11 H2A clustered histone 11 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:27,133,043...27,133,535
Ensembl chr 6:27,133,042...27,135,291
JBrowse link
G H2AC12 H2A clustered histone 12 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:27,147,106...27,147,562
Ensembl chr 6:27,147,106...27,147,562
JBrowse link
G H2AC13 H2A clustered histone 13 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:27,808,173...27,808,667
Ensembl chr 6:27,808,199...27,808,701
JBrowse link
G H2AC14 H2A clustered histone 14 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:27,814,302...27,814,777
Ensembl chr 6:27,814,302...27,814,777
JBrowse link
G H2AC15 H2A clustered histone 15 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:27,837,880...27,838,375
Ensembl chr 6:27,837,880...27,838,375
JBrowse link
G H2AC16 H2A clustered histone 16 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:27,865,317...27,865,798
Ensembl chr 6:27,865,317...27,865,798
JBrowse link
G H2AC17 H2A clustered histone 17 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:27,892,699...27,893,185
Ensembl chr 6:27,892,699...27,893,185
JBrowse link
G H2AC18 H2A clustered histone 18 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:149,842,218...149,842,750
Ensembl chr 1:149,842,188...149,842,736
JBrowse link
G H2AC19 H2A clustered histone 19 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:149,851,061...149,851,594
Ensembl chr 1:149,851,061...149,851,624
JBrowse link
G H2AC20 H2A clustered histone 20 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:149,886,918...149,887,411
Ensembl chr 1:149,886,918...149,887,411
JBrowse link
G H2AC21 H2A clustered histone 21 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:149,887,469...149,887,965
Ensembl chr 1:149,887,469...149,887,965
JBrowse link
G H2AC4 H2A clustered histone 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:26,033,092...26,033,618
Ensembl chr 6:26,033,092...26,033,618
JBrowse link
G H2AC6 H2A clustered histone 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:26,124,172...26,124,690
Ensembl chr 6:26,124,145...26,139,116
JBrowse link
G H2AC7 H2A clustered histone 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:26,198,784...26,199,293
Ensembl chr 6:26,198,784...26,199,293
JBrowse link
G H2AC8 H2A clustered histone 8 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:26,216,921...26,217,483
Ensembl chr 6:26,216,975...26,217,483
JBrowse link
G H2AJ H2A.J histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:14,774,405...14,778,002
Ensembl chr12:14,774,383...14,778,002
JBrowse link
G H2AL3 H2A.L variant histone 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:37,994,252...37,994,918
Ensembl chr  X:37,994,252...37,994,918
JBrowse link
G H2AP H2A.P histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:37,990,779...37,991,314
Ensembl chr  X:37,990,779...37,991,314
JBrowse link
G H2AW H2A.W histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:228,457,364...228,457,873
Ensembl chr 1:228,456,979...228,457,873
JBrowse link
G H2AX H2A.X variant histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:119,093,874...119,095,465
Ensembl chr11:119,093,854...119,095,467
JBrowse link
G H2AZ1 H2A.Z variant histone 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:99,948,088...99,950,275
Ensembl chr 4:99,948,086...99,950,355
JBrowse link
G H2AZ2 H2A.Z variant histone 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:44,826,889...44,848,126
Ensembl chr 7:44,826,791...44,848,087
JBrowse link
G HDAC5 histone deacetylase 5 involved_in TAS (PMID:10869435) PINC PMID:10869435 NCBI chr17:44,076,753...44,123,651
Ensembl chr17:44,076,746...44,123,702
JBrowse link
G HELLS helicase, lymphoid specific acts_upstream_of_or_within ISO (MGI:3510059|PMID:15448183) MGI PMID:15448183 MGI:3510059 NCBI chr10:94,545,778...94,613,905
Ensembl chr10:94,501,434...94,613,905
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in IDA (PMID:16901784) UniProt PMID:16901784 NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
JBrowse link
G HOTAIR HOX transcript antisense RNA acts_upstream_of_or_within ISO (MGI:5528742|PMID:24075995) MGI PMID:24075995 MGI:5528742 NCBI chr12:53,962,308...53,974,956
Ensembl chr12:53,962,308...53,974,956
JBrowse link
G KMT2D lysine methyltransferase 2D involved_in ISS UniProt GO_REF:0000024 NCBI chr12:49,018,975...49,060,884
Ensembl chr12:49,018,978...49,060,794
JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 involved_in IDA (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr20:43,507,697...43,550,954
Ensembl chr20:43,489,442...43,550,954
JBrowse link
G MACROH2A1 macroH2A.1 histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:135,334,381...135,401,998
Ensembl chr 5:135,333,900...135,399,914
JBrowse link
G MACROH2A2 macroH2A.2 histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:70,052,846...70,112,282
Ensembl chr10:70,052,544...70,112,282
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530434|PMID:15608638) MGI
Ensembl
PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chr  X:154,021,573...154,097,717
Ensembl chr  X:154,021,573...154,137,103
JBrowse link
G MORF4L1 mortality factor 4 like 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:78,872,890...78,898,139
Ensembl chr15:78,810,487...78,898,139
JBrowse link
G MORF4L2 mortality factor 4 like 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:103,675,498...103,688,047
Ensembl chr  X:103,675,496...103,688,158
JBrowse link
G MSL3 MSL complex subunit 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:11,758,159...11,775,772
Ensembl chr  X:11,758,159...11,775,772
JBrowse link
G MSL3P1 MSL complex subunit 3 pseudogene 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:233,865,437...233,868,409
Ensembl chr 2:233,865,437...233,868,444
JBrowse link
G PCGF1 polycomb group ring finger 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:74,505,043...74,507,695
Ensembl chr 2:74,505,043...74,507,695
JBrowse link
G PCGF2 polycomb group ring finger 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:38,733,898...38,749,817
Ensembl chr17:38,733,898...38,749,817
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:113,407,235...113,410,749
Ensembl chr 9:113,407,235...113,410,675
JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in ISS UniProt GO_REF:0000024 NCBI chr17:60,600,187...60,666,280
Ensembl chr17:60,600,183...60,666,280
JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in IDA (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr13:48,303,751...48,481,890
Ensembl chr13:48,303,744...48,599,436
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:32,651,208...32,686,211
Ensembl chr 1:32,651,142...32,686,211
JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:16,844,341...16,870,362
Ensembl chr  X:16,839,283...16,870,362
JBrowse link
G SCMH1 Scm polycomb group protein homolog 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:41,027,202...41,242,306
Ensembl chr 1:41,027,200...41,242,154
JBrowse link
G SIRT1 sirtuin 1 involved_in IDA (PMID:15469825) BHF-UCL PMID:15469825 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390
JBrowse link
G SIRT2 sirtuin 2 involved_in NAS (PMID:12697818) UniProt PMID:12697818 NCBI chr19:38,878,555...38,899,733
Ensembl chr19:38,878,555...38,899,862
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:3653583|PMID:16678107) ComplexPortal PMID:16678107 MGI:3653583 NCBI chr 4:143,513,501...143,557,486
Ensembl chr 4:143,513,702...143,557,486
JBrowse link
G TNP1 transition protein 1 involved_in IEP (PMID:11315969) UniProt PMID:11315969 NCBI chr 2:216,859,458...216,860,064
Ensembl chr 2:216,859,458...216,860,064
JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 6:42,563,954...42,693,505
Ensembl chr 6:42,564,029...42,693,505
JBrowse link
G UTY ubiquitously transcribed tetratricopeptide repeat containing, Y-linked acts_upstream_of_or_within ISO (MGI:5305502|PMID:22192413) MGI PMID:22192413 MGI:5305502 NCBI chr  Y:13,231,827...13,480,670
Ensembl chr  Y:13,234,577...13,480,673
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM172A family with sequence similarity 172 member A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:93,615,130...94,111,699
Ensembl chr 5:93,617,725...94,111,699
JBrowse link
G FAM172BP family with sequence similarity 172 member B, pseudogene involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:101,518,867...101,523,887
Ensembl chr 3:101,521,891...101,522,979
JBrowse link
G NRDE2 NRDE-2, necessary for RNA interference, domain containing involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:90,267,860...90,331,969
Ensembl chr14:90,267,860...90,331,969
JBrowse link
G ZNFX1 zinc finger NFX1-type containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:49,245,900...49,278,057
Ensembl chr20:49,237,946...49,278,426
JBrowse link
histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase involved_in IDA (PMID:16086026) UniProt PMID:16086026 NCBI chr11:108,222,484...108,369,102
Ensembl chr11:108,223,044...108,369,102
JBrowse link
G DCP2 decapping mRNA 2 involved_in IMP (PMID:18172165) UniProt PMID:18172165 NCBI chr 5:112,976,702...113,022,195
Ensembl chr 5:112,976,702...113,022,195
JBrowse link
G ERI1 exoribonuclease 1 NOT|involved_in IMP (PMID:18172165) UniProt PMID:18172165 NCBI chr 8:8,892,225...9,100,262
Ensembl chr 8:9,002,147...9,116,746
JBrowse link
G EXOSC10 exosome component 10 involved_in IBA
IMP
(PMID:21873635)
(PMID:18172165)
GO_Central
UniProt
PMID:18172165 PMID:21873635 NCBI chr 1:11,066,613...11,099,869
Ensembl chr 1:11,066,618...11,099,869
JBrowse link
G EXOSC4 exosome component 4 involved_in IMP (PMID:18172165) UniProt PMID:18172165 NCBI chr 8:144,064,061...144,080,648
Ensembl chr 8:144,078,648...144,080,648
JBrowse link
G LSM1 LSM1 homolog, mRNA degradation associated involved_in IMP (PMID:18172165) UniProt PMID:18172165 NCBI chr 8:38,163,321...38,176,730
Ensembl chr 8:38,163,335...38,176,730
JBrowse link
G MTPAP mitochondrial poly(A) polymerase involved_in IMP (PMID:18172165) UniProt PMID:18172165 NCBI chr10:30,309,801...30,349,278
Ensembl chr10:30,309,801...30,374,448
JBrowse link
G TENT2 terminal nucleotidyltransferase 2 involved_in IMP (PMID:18172165) UniProt PMID:18172165 NCBI chr 5:79,612,421...79,688,246
Ensembl chr 5:79,612,120...79,688,246
JBrowse link
G TENT4B terminal nucleotidyltransferase 4B involved_in IMP (PMID:18172165) UniProt PMID:18172165 NCBI chr16:50,152,911...50,235,310
Ensembl chr16:50,152,911...50,235,310
JBrowse link
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific NOT|involved_in IMP (PMID:18172165) UniProt PMID:18172165 NCBI chr11:62,575,052...62,591,523
Ensembl chr11:62,575,045...62,591,637
JBrowse link
G TUT4 terminal uridylyl transferase 4 NOT|involved_in IMP (PMID:18172165) UniProt PMID:18172165 NCBI chr 1:52,423,275...52,553,463
Ensembl chr 1:52,408,282...52,553,487
JBrowse link
G TUT7 terminal uridylyl transferase 7 NOT|involved_in IMP (PMID:18172165) UniProt PMID:18172165 NCBI chr 9:86,287,733...86,354,497
Ensembl chr 9:86,287,733...86,354,454
JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IMP (PMID:16086026) UniProt PMID:16086026 NCBI chr19:18,831,405...18,868,230
Ensembl chr19:18,831,959...18,868,230
JBrowse link
G XRN1 5'-3' exoribonuclease 1 involved_in IMP (PMID:18172165) UniProt PMID:18172165 NCBI chr 3:142,306,610...142,448,062
Ensembl chr 3:142,306,607...142,448,062
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr18:2,655,726...2,805,017
Ensembl chr18:2,655,726...2,805,017
JBrowse link
inhibition of cysteine-type endopeptidase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CARD16 caspase recruitment domain family member 16 involved_in IDA (PMID:11432859) UniProt PMID:11432859 NCBI chr11:105,040,218...105,045,416
Ensembl chr11:105,041,326...105,101,431
JBrowse link
G CARD18 caspase recruitment domain family member 18 involved_in IDA (PMID:11821383) UniProt PMID:11821383 NCBI chr11:105,137,714...105,139,769
Ensembl chr11:105,137,714...105,531,697
JBrowse link
G CARD8 caspase recruitment domain family member 8 involved_in IDA (PMID:11821383) UniProt PMID:11821383 NCBI chr19:48,203,148...48,256,264
Ensembl chr19:48,180,770...48,255,946
JBrowse link
G CAST calpastatin involved_in IMP
IBA
(PMID:2407243)
(PMID:21873635)
CAFA
GO_Central
PMID:2407243 PMID:21873635 NCBI chr 5:96,662,037...96,774,683
Ensembl chr 5:96,525,267...96,779,595
JBrowse link
G CST7 cystatin F involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5904382|PMID:28251676)
GO_Central
MGI
PMID:21873635 PMID:28251676 MGI:5904382 NCBI chr20:24,949,269...24,959,928
Ensembl chr20:24,949,269...24,959,928
JBrowse link
G NOL3 nucleolar protein 3 involved_in ISO PMID:17292893
PMID:16639714
UniProt PMID:16639714 PMID:17292893 RGD:10047164 RGD:10047212 NCBI chr16:67,170,538...67,175,737
Ensembl chr16:67,170,154...67,175,735
JBrowse link
G XIAP X-linked inhibitor of apoptosis involved_in IDA (PMID:11865055) UniProt PMID:11865055 NCBI chr  X:123,859,708...123,913,972
Ensembl chr  X:123,859,724...123,913,976
JBrowse link
inhibition of cysteine-type endopeptidase activity involved in apoptotic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2L12 BCL2 like 12 involved_in IDA (PMID:22262180) UniProt PMID:22262180 NCBI chr19:49,664,834...49,673,916
Ensembl chr19:49,665,142...49,673,916
JBrowse link
G FCMR Fc mu receptor acts_upstream_of_or_within ISO (MGI:3576402|PMID:15632112) MGI PMID:15632112 MGI:3576402 NCBI chr 1:206,903,282...206,922,001
Ensembl chr 1:206,903,317...206,923,247
JBrowse link
G NOL3 nucleolar protein 3 involved_in IDA
IBA
(PMID:15509781)
(PMID:21873635)
UniProt
GO_Central
PMID:15509781 PMID:21873635 NCBI chr16:67,170,538...67,175,737
Ensembl chr16:67,170,154...67,175,735
JBrowse link
G XIAP X-linked inhibitor of apoptosis involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2681362|PMID:14623868) Ensembl
MGI
PMID:14623868 GO_REF:0000107 MGI:2681362 NCBI chr  X:123,859,708...123,913,972
Ensembl chr  X:123,859,724...123,913,976
JBrowse link
miRNA loading onto RISC involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAR adenosine deaminase RNA specific acts_upstream_of_or_within IDA (PMID:23622242) MGI PMID:23622242 NCBI chr 1:154,582,057...154,627,997
Ensembl chr 1:154,581,695...154,628,013
JBrowse link
G AGO1 argonaute RISC component 1 involved_in IDA (PMID:19966796) BHF-UCL PMID:19966796 NCBI chr 1:35,869,761...35,930,532
Ensembl chr 1:35,869,808...35,930,532
JBrowse link
G AGO2 argonaute RISC catalytic component 2 involved_in IDA (PMID:16271387), (PMID:18178619), (PMID:19966796), (PMID:23661684) ComplexPortal PMID:16271387 PMID:18178619 PMID:19966796 PMID:23661684 NCBI chr 8:140,520,156...140,642,406
Ensembl chr 8:140,520,156...140,635,633
JBrowse link
G AGO3 argonaute RISC catalytic component 3 involved_in IDA (PMID:19966796) BHF-UCL PMID:19966796 NCBI chr 1:35,925,683...36,072,500
Ensembl chr 1:35,930,718...36,072,500
JBrowse link
G AGO4 argonaute RISC component 4 involved_in IDA (PMID:19966796) BHF-UCL PMID:19966796 NCBI chr 1:35,807,630...35,857,890
Ensembl chr 1:35,808,016...35,857,890
JBrowse link
G DICER1 dicer 1, ribonuclease III involved_in IDA (PMID:16271387), (PMID:18178619), (PMID:23661684) ComplexPortal PMID:16271387 PMID:18178619 PMID:23661684 NCBI chr14:95,086,228...95,158,263
Ensembl chr14:95,086,228...95,158,010
JBrowse link
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 involved_in IDA (PMID:23661684) ComplexPortal PMID:23661684 NCBI chr 2:178,431,414...178,451,175
Ensembl chr 2:178,431,292...178,451,512
JBrowse link
G TARBP2 TARBP2 subunit of RISC loading complex involved_in IDA (PMID:16271387), (PMID:18178619) BHF-UCL PMID:16271387 PMID:18178619 NCBI chr12:53,500,923...53,506,431
Ensembl chr12:53,500,921...53,506,431
JBrowse link
miRNA-mediated gene silencing by inhibition of translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO1 argonaute RISC component 1 involved_in IDA (PMID:18771919) UniProt PMID:18771919 NCBI chr 1:35,869,761...35,930,532
Ensembl chr 1:35,869,808...35,930,532
JBrowse link
G AGO2 argonaute RISC catalytic component 2 involved_in IDA
IMP
(PMID:17671087), (PMID:19801630)
(PMID:18771919)
UniProt PMID:17671087 PMID:18771919 PMID:19801630 NCBI chr 8:140,520,156...140,642,406
Ensembl chr 8:140,520,156...140,635,633
JBrowse link
G AGO3 argonaute RISC catalytic component 3 involved_in IDA (PMID:18771919) UniProt PMID:18771919