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ONTOLOGY REPORT - ANNOTATIONS


Term:programmed cell death involved in cell development
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Accession:GO:0010623 term browser browse the term
Definition:The activation of endogenous cellular processes that result in the death of a cell as part of its development.
Comment:This process is part of the natural developmental program of some cell types, but it does not always happen as part of the development or shaping of a gross anatomical structure.
Synonyms:broad_synonym: developmental programmed cell death;   programmed cell death involved in development



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programmed cell death involved in cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnase1l3 deoxyribonuclease 1-like 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2385551|PMID:12050166)
RGD PMID:12050166 PMID:21873635 MGI:2385551, RGD:13792537 NCBI chr15:16,922,335...16,948,322
Ensembl chr15:16,922,335...16,948,317
JBrowse link
G Ntrk1 neurotrophic receptor tyrosine kinase 1 involved_in IDA PMID:20811452 UniProt PMID:20811452 RGD:8554835 NCBI chr 2:173,236,961...173,253,806
Ensembl chr 2:173,236,963...173,253,770
JBrowse link
ectopic germ cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:1857429|MGI:96677|MGI:96974 (MGI:2680318|PMID:14660547), (MGI:3691300|PMID:17107997)
MGI:1857429 (MGI:1329774|PMID:9988273)
RGD PMID:9988273 PMID:14660547 PMID:17107997 MGI:1329774 MGI:2680318 MGI:3691300 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bcl2l1 Bcl2-like 1 acts_upstream_of ISO MGI:2176699 (MGI:1860555|PMID:10894153) RGD PMID:10894153 MGI:1860555 NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479
JBrowse link
G Casp2 caspase 2 acts_upstream_of_or_within ISO MGI:107700 (MGI:3691999|PMID:11536012) RGD PMID:11536012 MGI:3691999 NCBI chr 4:71,149,632...71,167,388
Ensembl chr 4:71,149,669...71,167,379
JBrowse link
G Casp4 caspase 4 acts_upstream_of_or_within ISO MGI:2159366|MGI:97295 (MGI:3691999|PMID:11536012) RGD PMID:11536012 MGI:3691999 NCBI chr 8:2,599,017...2,635,097
Ensembl chr 8:2,598,876...2,635,092
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 acts_upstream_of
involved_in
ISO
IEA
MGI:3698413 (MGI:5545663|PMID:24357321)
GO_REF:0000107
RGD
Ensembl
PMID:24357321 GO_REF:0000107 MGI:5545663 NCBI chr 1:207,252,890...207,278,685
Ensembl chr 1:207,252,890...207,278,676
JBrowse link
G Il1a interleukin 1 alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:96543 (MGI:3691999|PMID:11536012)
Ensembl
RGD
PMID:11536012 GO_REF:0000107 MGI:3691999 NCBI chr 3:116,526,601...116,537,055
Ensembl chr 3:116,526,604...116,536,822
JBrowse link
G Il1b interleukin 1 beta acts_upstream_of_or_within ISO MGI:96542 (MGI:3691999|PMID:11536012) RGD PMID:11536012 MGI:3691999 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
JBrowse link
G Insl6 insulin-like 6 acts_upstream_of ISO MGI:4431170 (MGI:4430687|PMID:19520787) RGD PMID:19520787 MGI:4430687 NCBI chr 1:227,069,958...227,073,493
Ensembl chr 1:227,069,958...227,073,493
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:99702 (MGI:2680318|PMID:14660547)
MGI:1856232 (MGI:3797995|PMID:18308723)
RGD PMID:14660547 PMID:18308723 MGI:2680318 MGI:3797995 NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO MGI:1856161 (MGI:3691300|PMID:17107997) RGD PMID:17107997 MGI:3691300 NCBI chr 7:34,896,075...34,977,215
Ensembl chr 7:34,896,053...34,977,214
JBrowse link
G Mael maelstrom spermatogenic transposon silencer acts_upstream_of
involved_in
ISO
IEA
MGI:3795667 (MGI:3813746|PMID:18694567)
GO_REF:0000107
RGD
Ensembl
PMID:18694567 GO_REF:0000107 MGI:3813746 NCBI chr13:78,457,073...78,496,657
Ensembl chr13:78,457,073...78,496,657
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO MGI:2667593 (MGI:3700621|PMID:17145779) RGD PMID:17145779 MGI:3700621 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Sod1 superoxide dismutase 1 acts_upstream_of ISO MGI:1857873 (MGI:3688805|PMID:16036348) RGD PMID:16036348 MGI:3688805 NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249
JBrowse link
G Syce3 synaptonemal complex central element protein 3 acts_upstream_of ISO (MGI:5306741|PMID:20407872) RGD PMID:20407872 MGI:5306741 NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973
JBrowse link
G Sycp2 synaptonemal complex protein 2 acts_upstream_of
involved_in
ISO
IEA
MGI:3526164 (MGI:3653558|PMID:16717126)
GO_REF:0000107
RGD
Ensembl
PMID:16717126 GO_REF:0000107 MGI:3653558 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789
JBrowse link
G Tex11 testis expressed 11 acts_upstream_of ISO MGI:3526163 (MGI:3774244|PMID:18316482) RGD PMID:18316482 MGI:3774244 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
G Topaz1 testis and ovary specific TOPAZ 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:5700076 (MGI:5697228|PMID:26358182)
GO_REF:0000107
RGD
Ensembl
PMID:26358182 GO_REF:0000107 MGI:5697228 NCBI chr 8:122,358,243...122,412,875
Ensembl chr 8:122,358,243...122,412,875
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B acts_upstream_of ISO MGI:2183933 (MGI:2450033|PMID:12556476) RGD PMID:12556476 MGI:2450033 NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665
JBrowse link
G Unc5c unc-5 netrin receptor C acts_upstream_of ISO MGI:1857852 (MGI:3775319|PMID:18077458) RGD PMID:18077458 MGI:3775319 NCBI chr 2:230,180,353...230,535,219
Ensembl chr 2:230,180,951...230,535,217
JBrowse link
G Ybx3 Y box binding protein 3 acts_upstream_of ISO MGI:3693011 (MGI:3692516|PMID:16954378) RGD PMID:16954378 MGI:3692516 NCBI chr 4:165,129,747...165,153,101
Ensembl chr 4:165,129,758...165,153,161
JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1857430 (MGI:1336407|PMID:10321489) RGD PMID:10321489 MGI:1336407 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO MGI:3054837 (MGI:3054140|PMID:15363390) RGD PMID:15363390 MGI:3054140 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223
JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 IMP RGD PMID:12917395 RGD:2301324 NCBI chr 2:218,466,063...218,478,503
Ensembl chr 2:218,466,076...218,478,502
JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor acts_upstream_of_or_within ISO (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
JBrowse link
G Cntf ciliary neurotrophic factor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:2155023|PMID:11747369)
Ensembl
RGD
PMID:11747369 GO_REF:0000107 MGI:2155023 NCBI chr 1:209,887,854...209,889,877
Ensembl chr 1:209,887,854...209,889,877
JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
JBrowse link
retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:1857429 (MGI:2677551|PMID:14517994) RGD PMID:14517994 MGI:2677551 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of ISO MGI:1857430 (MGI:1336407|PMID:10321489) RGD PMID:10321489 MGI:1336407 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of
involved_in
ISO
IEA
MGI:3054837 (MGI:3054140|PMID:15363390)
GO_REF:0000107
RGD
Ensembl
PMID:15363390 GO_REF:0000107 MGI:3054140 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223
JBrowse link
G Faslg Fas ligand acts_upstream_of_or_within ISO MGI:1856384 (MGI:2677551|PMID:14517994) RGD PMID:14517994 MGI:2677551 NCBI chr13:74,151,519...74,172,760
Ensembl chr13:74,154,954...74,162,215
JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO MGI:2682641 (MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:2680888 NCBI chr15:10,585,307...10,664,781
Ensembl chr15:10,588,979...10,664,781
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18734
    developmental process 6893
      cellular developmental process 4533
        programmed cell death involved in cell development 30
          antipodal cell degeneration 0
          ectopic germ cell programmed cell death 20
          larval midgut cell programmed cell death 0
          nurse cell apoptotic process + 0
          retinal cell programmed cell death + 9
          salivary gland cell autophagic cell death + 0
          synergid death 0
Path 2
Term Annotations click to browse term
  biological_process 18734
    developmental process 6893
      cellular developmental process 4533
        cell differentiation 4510
          cell development 2535
            programmed cell death involved in cell development 30
              antipodal cell degeneration 0
              ectopic germ cell programmed cell death 20
              larval midgut cell programmed cell death 0
              nurse cell apoptotic process + 0
              retinal cell programmed cell death + 9
              salivary gland cell autophagic cell death + 0
              synergid death 0
paths to the root