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ONTOLOGY REPORT - ANNOTATIONS

Term:miRNA catabolic process
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Accession:GO:0010587 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression.
Synonyms:exact_synonym: microRNA catabolic process

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miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3 like 3'-5' exoribonuclease 2 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936525:4,718,773...5,058,512
Ensembl chrNW_004936525:4,719,121...5,008,014 		JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (MGI:4359358|PMID:18604195), (MGI:4359360|PMID:18292307)
(PMID:19703396)
(MGI:5294254|PMID:21962509)		 UniProt
BHF-UCL		 PMID:18292307 PMID:18604195 PMID:19703396 PMID:21962509 MGI:4359358 MGI:4359360 MGI:5294254 NCBI chrNW_004936474:10,896,153...10,909,247 JBrowse link
G Lin28b lin-28 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:1,646,469...1,768,879
Ensembl chrNW_004936564:1,663,068...1,768,283 		JBrowse link
G Parn poly(A)-specific ribonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:2,666,908...2,810,159
Ensembl chrNW_004936501:2,666,874...2,810,488 		JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:14,848,438...15,259,735
Ensembl chrNW_004936479:14,848,463...15,260,014 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:25049417) UniProt PMID:25049417 NCBI chrNW_004936475:3,266,763...3,328,209 JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:19703396) UniProt PMID:19703396 NCBI chrNW_004936522:8,468,092...8,560,453
Ensembl chrNW_004936522:8,469,443...8,560,447 		JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:19,714,145...19,722,512
Ensembl chrNW_004936474:19,714,153...19,722,528 		JBrowse link
negative regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qki QKI, KH domain containing RNA binding involved_in ISO (PMID:31792053) UniProt PMID:31792053 NCBI chrNW_004936489:13,901,066...14,000,652
Ensembl chrNW_004936489:13,901,754...13,999,983 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936549:7,401,532...7,465,264
Ensembl chrNW_004936549:7,408,563...7,463,895 		JBrowse link
positive regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lin28b lin-28 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:1,646,469...1,768,879
Ensembl chrNW_004936564:1,663,068...1,768,283 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:1,989,429...2,032,430
Ensembl chrNW_004936491:1,987,097...2,032,430 		JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:19,714,145...19,722,512
Ensembl chrNW_004936474:19,714,153...19,722,528 		JBrowse link
G Zswim8 zinc finger SWIM-type containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:5,346,971...5,363,297
Ensembl chrNW_004936521:5,346,971...5,363,332 		JBrowse link
target-directed miRNA degradation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elob elongin B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,296,304...1,301,183
Ensembl chrNW_004936694:1,296,782...1,300,149 		JBrowse link
G Eloc elongin C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936648:2,606,075...2,629,997
Ensembl chrNW_004936648:2,604,283...2,630,035 		JBrowse link
G LOC101956702 elongin-C-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936695:2,581,087...2,581,569 JBrowse link
G Zswim8 zinc finger SWIM-type containing 8 involved_in ISO (PMID:33184237) FlyBase PMID:33184237 NCBI chrNW_004936521:5,346,971...5,363,297
Ensembl chrNW_004936521:5,346,971...5,363,332 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15969
    metabolic process 9630
      catabolic process 2385
        organic substance catabolic process 1989
          macromolecule catabolic process 1324
            RNA catabolic process 279
              miRNA catabolic process 15
                negative regulation of miRNA catabolic process 2
                positive regulation of miRNA catabolic process 4
                regulation of miRNA catabolic process + 6
                target-directed miRNA degradation 4
Path 2
Term Annotations click to browse term
  biological_process 15969
    metabolic process 9630
      organic substance metabolic process 9204
        organic cyclic compound metabolic process 5206
          nucleobase-containing compound metabolic process 4756
            nucleic acid metabolic process 4277
              RNA metabolic process 3754
                ncRNA metabolic process 541
                  miRNA metabolic process 105
                    miRNA catabolic process 15
                      negative regulation of miRNA catabolic process 2
                      positive regulation of miRNA catabolic process 4
                      regulation of miRNA catabolic process + 6
                      target-directed miRNA degradation 4
paths to the root