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ONTOLOGY REPORT - ANNOTATIONS


Term:miRNA catabolic process
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Accession:GO:0010587 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression.
Synonyms:exact_synonym: microRNA catabolic process


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miRNA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 ISO
IBA
(PMID:24141620)
PMID:21873635
(MGI:MGI:5494337|PMID:23594738), (MGI:MGI:5603455|PMID:25119025)
RGD PMID:23594738, PMID:24141620, PMID:25119025, PMID:21873635 MGI:MGI:5494337, MGI:MGI:5603455, RGD:13792537 NCBI chr 9:93,767,837...94,161,106
Ensembl chr 9:93,660,680...94,160,760
JBrowse link
G Lin28a lin-28 homolog A ISO (PMID:18951094), (PMID:19703396)
(MGI:MGI:4359358|PMID:18604195), (MGI:MGI:4359360|PMID:18292307)
RGD PMID:18292307, PMID:18604195, PMID:18951094, PMID:19703396 MGI:MGI:4359358, MGI:MGI:4359360 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G Lin28b lin-28 homolog B ISO (PMID:19703396) RGD PMID:19703396 NCBI chr20:50,482,536...50,580,273
Ensembl chr20:50,486,809...50,564,987
JBrowse link
G Parn poly(A)-specific ribonuclease ISO (PMID:25049417) RGD PMID:25049417 NCBI chr10:1,309,724...1,461,123
Ensembl chr10:1,308,414...1,461,269
JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 ISO (PMID:28546213) RGD PMID:28546213 NCBI chr 4:55,772,377...56,171,669
Ensembl chr 4:55,772,377...56,171,668
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B ISO (PMID:25049417) RGD PMID:25049417 NCBI chr19:19,771,289...19,834,759
Ensembl chr19:19,771,677...19,832,812
JBrowse link
G Tut4 terminal uridylyl transferase 4 ISO (PMID:19703396) RGD PMID:19703396 NCBI chr 5:128,063,880...128,168,726
Ensembl chr 5:128,083,118...128,168,207
JBrowse link
negative regulation of miRNA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent2 terminal nucleotidyltransferase 2 ISS
ISO
GO_REF:0000024
(PMID:23200856)
UniProt
RGD
PMID:23200856 GO_REF:0000024 NCBI chr 2:22,746,290...22,798,252
Ensembl chr 2:22,747,547...22,798,214
JBrowse link
positive regulation of miRNA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lin28b lin-28 homolog B ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:50,482,536...50,580,273
Ensembl chr20:50,486,809...50,564,987
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 ISO (PMID:20547861) RGD PMID:20547861 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISS
ISO
GO_REF:0000024
(PMID:22055188), (PMID:24048733)
UniProt
RGD
PMID:22055188, PMID:24048733 GO_REF:0000024 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20015
    metabolic process 12259
      primary metabolic process 10904
        nucleobase-containing compound metabolic process 5483
          nucleobase-containing compound catabolic process 373
            RNA catabolic process 266
              ncRNA catabolic process 37
                miRNA catabolic process 10
                  negative regulation of miRNA catabolic process 1
                  positive regulation of miRNA catabolic process 3
                  regulation of miRNA catabolic process + 4
Path 2
Term Annotations click to browse term
  biological_process 20015
    metabolic process 12259
      cellular metabolic process 11067
        cellular aromatic compound metabolic process 5709
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                ncRNA metabolic process 523
                  miRNA metabolic process 26
                    miRNA catabolic process 10
                      negative regulation of miRNA catabolic process 1
                      positive regulation of miRNA catabolic process 3
                      regulation of miRNA catabolic process + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.