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ONTOLOGY REPORT - ANNOTATIONS

Term:miRNA catabolic process
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Accession:GO:0010587 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression.
Synonyms:exact_synonym: microRNA catabolic process


show annotations for term's descendants           Sort by:
miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 involved_in ISO
IBA		 (PMID:24141620)
(PMID:23594738), (PMID:25119025)
GO_REF:0000033		 RGD
GO_Central		 PMID:23594738 PMID:24141620 PMID:25119025 GO_REF:0000033 NCBI chr 9:87,355,409...87,736,616
Ensembl chr 9:87,356,457...87,736,616 		JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (PMID:19703396)
(PMID:18292307), (PMID:18604195), (PMID:21962509)		 RGD PMID:18292307 PMID:18604195 PMID:19703396 PMID:21962509 NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122 		JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:19703396) RGD PMID:19703396 NCBI chr20:48,865,329...48,964,769
Ensembl chr20:48,869,485...48,955,077 		JBrowse link
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:25049417) RGD PMID:25049417 NCBI chr10:1,410,636...1,548,573
Ensembl chr10:1,410,642...1,548,560 		JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 involved_in ISO
IEA		 (PMID:28546213)
GO_REF:0000107		 RGD
Ensembl		 PMID:28546213 GO_REF:0000107 NCBI chr 4:57,095,205...57,494,501
Ensembl chr 4:57,095,208...57,530,843 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:25049417) RGD PMID:25049417 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537 		JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:19703396) RGD PMID:19703396 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
ISO		 GO_REF:0000024
(PMID:22055188)		 UniProt
RGD		 PMID:22055188 GO_REF:0000024 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
negative regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qki QKI, KH domain containing RNA binding involved_in ISS
ISO		 GO_REF:0000024
(PMID:31792053)		 UniProt
RGD		 PMID:31792053 GO_REF:0000024 NCBI chr 1:50,387,716...50,501,568
Ensembl chr 1:50,387,698...50,498,831 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:23200856), (PMID:31792053)		 UniProt
Ensembl
RGD		 PMID:23200856 PMID:31792053 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
positive regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:48,865,329...48,964,769
Ensembl chr20:48,869,485...48,955,077 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20547861) RGD PMID:20547861 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
G Xist X inactive specific transcript involved_in ISO (PMID:29053187) RGD PMID:29053187 NCBI chr  X:68,474,987...68,492,500 JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISO (PMID:24048733) RGD PMID:24048733 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
G Zswim8 zinc finger, SWIM-type containing 8 involved_in ISO (PMID:33184234), (PMID:33184237)
(PMID:33184237)		 RGD PMID:33184234 PMID:33184237 NCBI chr15:3,573,780...3,589,501
Ensembl chr15:3,573,780...3,589,487 		JBrowse link
target-directed miRNA degradation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elob elongin B involved_in ISO (PMID:33184237) RGD PMID:33184237 NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635 		JBrowse link
G Eloc elongin C involved_in ISO (PMID:33184237) RGD PMID:33184237 NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890 		JBrowse link
G Oip5-as1 OIP5 antisense RNA 1 involved_in ISO (PMID:33184237) RGD PMID:33184237 NCBI chr 3:106,578,309...106,591,845 JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:29887379)		 Ensembl
RGD		 PMID:29887379 GO_REF:0000107 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
G Zswim8 zinc finger, SWIM-type containing 8 involved_in ISO (PMID:33184237) RGD PMID:33184237 NCBI chr15:3,573,780...3,589,501
Ensembl chr15:3,573,780...3,589,487 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20069
    cellular process 19150
      metabolic process 11949
        catabolic process 2870
          macromolecule catabolic process 1630
            nucleic acid catabolic process 419
              RNA catabolic process 389
                miRNA catabolic process 16
                  negative regulation of miRNA catabolic process 2
                  positive regulation of miRNA catabolic process 5
                  regulation of miRNA catabolic process + 7
                  target-directed miRNA degradation 5
Path 2
Term Annotations click to browse term
  biological_process 20069
    cellular process 19150
      metabolic process 11949
        primary metabolic process 10579
          nucleobase-containing compound metabolic process 5792
            nucleic acid metabolic process 5183
              RNA metabolic process 4608
                RNA catabolic process 389
                  miRNA catabolic process 16
                    negative regulation of miRNA catabolic process 2
                    positive regulation of miRNA catabolic process 5
                    regulation of miRNA catabolic process + 7
                    target-directed miRNA degradation 5
paths to the root