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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of glycoprotein biosynthetic process
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Accession:GO:0010559 term browser browse the term
Definition:Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.


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regulation of glycoprotein biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator ISO
IEA
MGI:MGI:1857134 (MGI:MGI:3526739|PMID:15292044)
GO_REF:0000107
RGD
Ensembl
PMID:15292044 GO_REF:0000107, MGI:MGI:3526739 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Gata1 GATA binding protein 1 ISO (PMID:15701726)
(MGI:MGI:3580921|PMID:15701726)
RGD PMID:15701726 MGI:MGI:3580921 NCBI chr  X:15,273,937...15,281,759
Ensembl chr  X:15,378,789...15,382,066
JBrowse link
negative regulation of amyloid precursor protein biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aatf apoptosis antagonizing transcription factor ISO (MGI:MGI:3028747|PMID:14627703) RGD PMID:14627703 MGI:MGI:3028747 NCBI chr10:71,744,648...71,837,851
Ensembl chr10:71,744,659...71,837,851
JBrowse link
G Abca7 ATP binding cassette subfamily A member 7 ISO
ISS
(MGI:MGI:5553242|PMID:18429932)
GO_REF:0000024
RGD
Alzheimers_University_of_Toronto
PMID:18429932 GO_REF:0000024, MGI:MGI:5553242 NCBI chr 7:12,742,433...12,762,423
Ensembl chr 7:12,742,433...12,762,341
JBrowse link
G Ago2 argonaute RISC catalytic component 2 IMP PMID:20395292 ARUK-UCL PMID:20395292 RGD:14390059 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Bace2 beta-secretase 2 ISO
ISS
(PMID:12801932)
GO_REF:0000024
RGD
UniProt
PMID:12801932 GO_REF:0000024 NCBI chr11:37,798,397...37,880,624
Ensembl chr11:37,798,370...37,880,821
JBrowse link
G Itm2a integral membrane protein 2A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:78,490,872...78,496,814
Ensembl chr  X:78,490,866...78,496,847
JBrowse link
G Itm2b integral membrane protein 2B ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:16027166), (PMID:18524908)
UniProt
RGD
PMID:16027166, PMID:18524908, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr15:55,254,703...55,277,713
Ensembl chr15:55,254,706...55,277,713
JBrowse link
G Itm2c integral membrane protein 2C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:92,916,469...92,930,306
Ensembl chr 9:92,916,469...92,930,279
JBrowse link
negative regulation of CD4 production term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot8 acyl-CoA thioesterase 8 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:9153233)
Ensembl
UniProt
RGD
PMID:9153233 GO_REF:0000024, GO_REF:0000107 NCBI chr 3:161,260,837...161,272,495
Ensembl chr 3:161,259,735...161,272,460
JBrowse link
negative regulation of elastin biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hbegf heparin-binding EGF-like growth factor IDA PMID:12882762 UniProt PMID:12882762 RGD:8554842 NCBI chr18:29,330,302...29,340,185
Ensembl chr18:29,329,764...29,340,403
JBrowse link
negative regulation of FasL production term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jak3 Janus kinase 3 ISO
ISS
(MGI:MGI:3655405|PMID:9498750)
GO_REF:0000024
RGD
BHF-UCL
PMID:9498750 GO_REF:0000024, MGI:MGI:3655405 NCBI chr16:20,107,471...20,120,678
Ensembl chr16:20,109,200...20,120,668
JBrowse link
negative regulation of protein glycosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mgat4d MGAT4 family, member D ISO (MGI:MGI:5887193|PMID:20805325) RGD PMID:20805325 MGI:MGI:5887193 NCBI chr19:24,494,366...24,534,039
Ensembl chr19:24,496,569...24,532,772
JBrowse link
G Oga O-GlcNAcase IMP RGD PMID:16332679 RGD:2305959 NCBI chr 1:265,506,752...265,542,452
Ensembl chr 1:265,507,451...265,542,276
JBrowse link
negative regulation of protein glycosylation in Golgi term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acer2 alkaline ceramidase 2 ISO (PMID:20089856) RGD PMID:20089856 NCBI chr 5:105,230,540...105,279,732
Ensembl chr 5:105,230,580...105,279,731
JBrowse link
G Tmem59 transmembrane protein 59 ISO (PMID:20427278) RGD PMID:20427278 NCBI chr 5:126,783,061...126,804,177
Ensembl chr 5:126,783,061...126,804,175
JBrowse link
negative regulation of proteoglycan biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc2a10 solute carrier family 2 member 10 ISO (PMID:16550171) RGD PMID:16550171 NCBI chr 3:162,182,156...162,194,610
Ensembl chr 3:162,181,974...162,194,804
JBrowse link
positive regulation of amyloid precursor protein biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 ISO
IEA
(PMID:20704561)
GO_REF:0000107
RGD
Ensembl
PMID:20704561 GO_REF:0000107 NCBI chr 3:2,648,787...2,668,770
Ensembl chr 3:2,648,885...2,668,809
JBrowse link
G Ncstn nicastrin ISO (MGI:MGI:5569714|PMID:23826707) RGD PMID:23826707 MGI:MGI:5569714 NCBI chr13:90,451,046...90,467,256
Ensembl chr13:90,451,044...90,467,256
JBrowse link
G Pawr pro-apoptotic WT1 regulator ISO
IEA
(MGI:MGI:3028747|PMID:14627703)
GO_REF:0000107
RGD
Ensembl
PMID:14627703 GO_REF:0000107, MGI:MGI:3028747 NCBI chr 7:51,273,764...51,353,700
Ensembl chr 7:51,273,771...51,353,068
JBrowse link
G Soat1 sterol O-acyltransferase 1 ISO
IEA
(PMID:17412327)
GO_REF:0000107
RGD
Ensembl
PMID:17412327 GO_REF:0000107 NCBI chr13:74,035,258...74,077,759
Ensembl chr13:74,035,080...74,077,783
JBrowse link
positive regulation of CD24 production term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plcb1 phospholipase C beta 1 ISO
IEA
ISS
(MGI:MGI:4943410|PMID:15849202)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
BHF-UCL
PMID:15849202 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4943410 NCBI chr 3:127,721,244...128,419,565
Ensembl chr 3:128,155,069...128,419,545
JBrowse link
positive regulation of CD80 production term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il33 interleukin 33 ISO
IEA
(MGI:MGI:6414704|PMID:26936882)
GO_REF:0000107
RGD
Ensembl
PMID:26936882 GO_REF:0000107, MGI:MGI:6414704 NCBI chr 1:248,112,611...248,147,030
Ensembl chr 1:248,132,090...248,147,029
JBrowse link
positive regulation of CD86 production term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il33 interleukin 33 ISO
IEA
(MGI:MGI:6414704|PMID:26936882)
GO_REF:0000107
RGD
Ensembl
PMID:26936882 GO_REF:0000107, MGI:MGI:6414704 NCBI chr 1:248,112,611...248,147,030
Ensembl chr 1:248,132,090...248,147,029
JBrowse link
positive regulation of glycoprotein biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl19 C-C motif chemokine ligand 19 ISO (MGI:MGI:3576832|PMID:15845453) RGD PMID:15845453 MGI:MGI:3576832 NCBI chr 5:58,181,025...58,182,969
Ensembl chr 5:58,181,026...58,183,017
JBrowse link
G Ep300 E1A binding protein p300 IMP fibronectin RGD PMID:17065349 RGD:2312275 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Igf1 insulin-like growth factor 1 ISO
IEA
(PMID:9564845)
GO_REF:0000107
RGD
Ensembl
PMID:9564845 GO_REF:0000107 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Insr insulin receptor IMP P-glycoprotein RGD PMID:19049803 RGD:2307019 NCBI chr12:1,682,527...1,816,414
Ensembl chr12:1,680,957...1,816,414
JBrowse link
positive regulation of glycoprotein biosynthetic process involved in immunological synapse formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr7 C-C motif chemokine receptor 7 ISO (MGI:MGI:3576832|PMID:15845453) RGD PMID:15845453 MGI:MGI:3576832 NCBI chr10:87,057,335...87,067,444
Ensembl chr10:87,057,136...87,067,456
JBrowse link
positive regulation of heparan sulfate proteoglycan biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISO
IEA
ISS
(PMID:15853773)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:15853773 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Pxylp1 2-phosphoxylose phosphatase 1 ISO
ISS
(PMID:24425863)
GO_REF:0000024
RGD
UniProt
PMID:24425863 GO_REF:0000024 NCBI chr 8:104,724,728...104,790,639
Ensembl chr 8:104,724,743...104,790,639
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO (PMID:15853773) RGD PMID:15853773 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
positive regulation of protein glycosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chp1 calcineurin-like EF-hand protein 1 IDA PMID:21543739 UniProt PMID:21543739 RGD:8554239 NCBI chr 3:111,354,506...111,389,998
Ensembl chr 3:111,354,506...111,389,989
JBrowse link
G Golga2 golgin A2 ISO (PMID:22735382) RGD PMID:22735382 NCBI chr 3:11,317,328...11,337,569
Ensembl chr 3:11,317,183...11,336,458
JBrowse link
G Ramp1 receptor activity modifying protein 1 ISO (PMID:9620797) RGD PMID:9620797 NCBI chr 9:98,313,632...98,364,206
Ensembl chr 9:98,313,632...98,364,205
JBrowse link
G Slc51b solute carrier family 51 subunit beta ISO (MGI:MGI:5437400|PMID:22535958) RGD PMID:22535958 MGI:MGI:5437400 NCBI chr 8:70,930,196...70,938,559
Ensembl chr 8:70,930,347...70,932,986
JBrowse link
positive regulation of protein glycosylation in Golgi term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfgef1 ADP ribosylation factor guanine nucleotide exchange factor 1 ISO
ISS
(PMID:17227842)
GO_REF:0000024
RGD
UniProt
PMID:17227842 GO_REF:0000024 NCBI chr 5:8,666,046...8,760,458
Ensembl chr 5:8,666,200...8,760,458
JBrowse link
positive regulation of protein O-linked glycosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il15 interleukin 15 ISO (MGI:MGI:5567847|PMID:24509081) RGD PMID:24509081 MGI:MGI:5567847 NCBI chr19:23,542,606...23,624,366
Ensembl chr19:23,542,889...23,554,594
JBrowse link
G Pomt1 protein-O-mannosyltransferase 1 IDA RGD PMID:16704966 RGD:11532759 NCBI chr 3:11,253,424...11,271,873
Ensembl chr 3:11,254,026...11,271,872
JBrowse link
G Pomt2 protein-O-mannosyltransferase 2 IDA RGD PMID:16704966 RGD:11532759 NCBI chr 6:111,137,329...111,176,991
Ensembl chr 6:111,135,349...111,176,918
JBrowse link
positive regulation of proteoglycan biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mustn1 musculoskeletal, embryonic nuclear protein 1 ISO (MGI:MGI:5703727|PMID:19410023) RGD PMID:19410023 MGI:MGI:5703727 NCBI chr16:6,962,737...6,964,987
Ensembl chr16:6,962,722...6,964,989
JBrowse link
G Slc2a10 solute carrier family 2 member 10 ISO (PMID:16550171) RGD PMID:16550171 NCBI chr 3:162,182,156...162,194,610
Ensembl chr 3:162,181,974...162,194,804
JBrowse link
regulation of amyloid precursor protein biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Necab1 N-terminal EF-hand calcium binding protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:28,507,596...28,737,556
Ensembl chr 5:28,504,558...28,737,719
JBrowse link
G Necab2 N-terminal EF-hand calcium binding protein 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:52,086,325...52,112,633
Ensembl chr19:52,086,325...52,112,629
JBrowse link
G Necab3 N-terminal EF-hand calcium binding protein 3 ISO (PMID:10833507) RGD PMID:10833507 NCBI chr 3:150,047,826...150,062,806
Ensembl chr 3:150,047,826...150,073,721
JBrowse link
regulation of protein glycosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 ISO (MGI:MGI:6355606|PMID:22086926) RGD PMID:22086926 MGI:MGI:6355606 NCBI chr 3:2,648,787...2,668,770
Ensembl chr 3:2,648,885...2,668,809
JBrowse link
G Mt3 metallothionein 3 ISO
ISS
(MGI:MGI:4881636|PMID:20544854)
GO_REF:0000024
RGD
UniProt
PMID:20544854 GO_REF:0000024, MGI:MGI:4881636 NCBI chr19:11,324,708...11,326,112
Ensembl chr19:11,324,698...11,326,139
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      regulation of metabolic process 7007
        regulation of cellular metabolic process 6240
          regulation of glycoprotein metabolic process 51
            regulation of glycoprotein biosynthetic process 44
              negative regulation of glycoprotein biosynthetic process + 15
              positive regulation of glycoprotein biosynthetic process + 24
              regulation of CD24 production + 1
              regulation of CD4 production + 1
              regulation of CD80 production + 1
              regulation of CD86 production + 1
              regulation of FasL production + 1
              regulation of amyloid precursor protein biosynthetic process + 14
              regulation of elastin biosynthetic process + 1
              regulation of heparan sulfate proteoglycan biosynthetic process + 3
              regulation of protein glycosylation + 14
Path 2
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      organic substance metabolic process 11636
        macromolecule metabolic process 10081
          protein metabolic process 6214
            glycoprotein metabolic process 362
              glycoprotein biosynthetic process 296
                regulation of glycoprotein biosynthetic process 44
                  negative regulation of glycoprotein biosynthetic process + 15
                  positive regulation of glycoprotein biosynthetic process + 24
                  regulation of CD24 production + 1
                  regulation of CD4 production + 1
                  regulation of CD80 production + 1
                  regulation of CD86 production + 1
                  regulation of FasL production + 1
                  regulation of amyloid precursor protein biosynthetic process + 14
                  regulation of elastin biosynthetic process + 1
                  regulation of heparan sulfate proteoglycan biosynthetic process + 3
                  regulation of protein glycosylation + 14
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.