Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:retrotransposon silencing
go back to main search page
Accession:GO:0010526 term browser browse the term
Definition:Any process that decreases the frequency, rate or extent of retrotransposition. Retrotransposons are a subset of transposable elements that use an RNA intermediate and reverse transcribe themselves into the genome.
Synonyms:exact_synonym: negative regulation of transposition, RNA-mediated
 xref: Wikipedia:Retrotransposon_silencing


show annotations for term's descendants           Sort by:
retrotransposon silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:18779051), (PMID:18827027)
(MGI:5285175|PMID:16527742)		 UniProt
RGD		 PMID:16527742 PMID:18779051 PMID:18827027 GO_REF:0000024 MGI:5285175 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 involved_in ISO (MGI:4356194|PMID:19730684) RGD PMID:19730684 MGI:4356194 NCBI chr 4:46,400,485...46,456,085
Ensembl chr 4:46,400,485...46,456,085 		JBrowse link
G Btbd18 BTB domain containing 18 acts_upstream_of_positive_effect ISO (MGI:5882241|PMID:28292424) RGD PMID:28292424 MGI:5882241 NCBI chr 3:69,743,057...69,751,096
Ensembl chr 3:69,745,012...69,751,042 		JBrowse link
G Mov10 Mov10 RNA helicase involved_in ISO (MGI:6099622|PMID:28662698)
(PMID:23093941)		 RGD PMID:23093941 PMID:28662698 MGI:6099622 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (MGI:6214653|PMID:25247314), (MGI:6303534|PMID:30853213) RGD PMID:25247314 PMID:30853213 MGI:6214653 MGI:6303534 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Sirt7 sirtuin 7 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6377981|PMID:31226208)		 UniProt
RGD		 PMID:31226208 GO_REF:0000024 MGI:6377981 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172 		JBrowse link
G Tdrd9 tudor domain containing 9 acts_upstream_of_or_within ISO (PMID:27473657) RGD PMID:27473657 NCBI chr 6:131,029,644...131,145,076
Ensembl chr 6:131,029,652...131,144,651 		JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6434559|PMID:32381626) RGD PMID:32381626 MGI:6434559 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467 		JBrowse link
G Tex19.2 testis expressed gene 19.2 involved_in ISO (PMID:28806172) RGD PMID:28806172 NCBI chr10:106,379,757...106,382,344
Ensembl chr10:106,379,757...106,382,344 		JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO (MGI:5912961|PMID:28806172) RGD PMID:28806172 MGI:5912961 NCBI chr 9:13,982,427...14,062,315
Ensembl chr 9:13,982,329...14,062,139 		JBrowse link
piRNA-mediated retrotransposon silencing by heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx4 DEAD-box helicase 4 acts_upstream_of_positive_effect ISS
ISO		 GO_REF:0000024
(MGI:5908740|PMID:28633017)		 UniProt
RGD		 PMID:28633017 GO_REF:0000024 MGI:5908740 NCBI chr 2:44,227,946...44,282,867
Ensembl chr 2:44,227,946...44,282,723 		JBrowse link
G Dnmt3c DNA methyltransferase 3C involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 3:142,178,533...142,210,954 JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in ISO (MGI:5316869|PMID:22121019) RGD PMID:22121019 MGI:5316869 NCBI chr12:27,949,743...27,970,645
Ensembl chr12:27,949,744...27,970,580 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 acts_upstream_of_positive_effect ISO (MGI:5501381|PMID:23706823) RGD PMID:23706823 MGI:5501381 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702 		JBrowse link
G Spocd1 SPOC domain containing 1 involved_in ISO (MGI:6453929|PMID:32674113) RGD PMID:32674113 MGI:6453929 NCBI chr 5:142,288,822...142,297,113 JBrowse link
G Tdrd9 tudor domain containing 9 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5908740|PMID:28633017)		 UniProt
RGD		 PMID:28633017 GO_REF:0000024 MGI:5908740 NCBI chr 6:131,029,644...131,145,076
Ensembl chr 6:131,029,652...131,144,651 		JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6447460|PMID:32719317) RGD PMID:32719317 MGI:6447460 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467 		JBrowse link
retrotransposon silencing by DNA methylation-dependent heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3c DNA methyltransferase 3C involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 3:142,178,533...142,210,954 JBrowse link
retrotransposon silencing by heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (PMID:27856912) RGD PMID:27856912 NCBI chr 3:142,130,588...142,169,128
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in
acts_upstream_of_or_within		 IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:3054275|PMID:15318244)
MGI:2155766 (PMID:25503965)		 Ensembl
UniProt
RGD		 PMID:15318244 PMID:25503965 GO_REF:0000024 GO_REF:0000107 MGI:3054275 NCBI chr20:10,614,933...10,629,337
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO MGI:1857787 (PMID:25503965) RGD PMID:25503965 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 acts_upstream_of_positive_effect ISO (MGI:5319753|PMID:22020280) RGD PMID:22020280 MGI:5319753 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702 		JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 acts_upstream_of_positive_effect
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:3712153 (PMID:25503965)
(MGI:5319753|PMID:22020280)		 UniProt
RGD		 PMID:22020280 PMID:25503965 GO_REF:0000024 MGI:5319753 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761 		JBrowse link
G Smyd5 SMYD family member 5 involved_in ISO (PMID:28951459)
(MGI:6103640|PMID:28951459)		 RGD PMID:28951459 MGI:6103640 NCBI chr 4:117,969,615...117,984,082
Ensembl chr 4:117,969,626...117,984,347 		JBrowse link
retrotransposon silencing by mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mov10 Mov10 RNA helicase involved_in ISO (PMID:30122351) RGD PMID:30122351 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (MGI:3815367|PMID:18922463) RGD PMID:18922463 MGI:3815367 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702 		JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in ISO (MGI:3815367|PMID:18922463) RGD PMID:18922463 MGI:3815367 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761 		JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:30122351) RGD PMID:30122351 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465 		JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (PMID:30122351) RGD PMID:30122351 NCBI chr17:4,849,287...4,903,542
Ensembl chr17:4,849,283...4,903,169 		JBrowse link
siRNA-mediated retrotransposon silencing by heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx4 DEAD-box helicase 4 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4443217|PMID:20439430)		 UniProt
RGD		 PMID:20439430 GO_REF:0000024 MGI:4443217 NCBI chr 2:44,227,946...44,282,867
Ensembl chr 2:44,227,946...44,282,723 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5439219|PMID:22902560)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:22902560 GO_REF:0000024 GO_REF:0000107 MGI:5439219 NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350 		JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in ISO (MGI:4417983|PMID:20011505) RGD PMID:20011505 MGI:4417983 NCBI chr13:78,457,073...78,496,657
Ensembl chr13:78,457,073...78,496,657 		JBrowse link
G Mov10l1 Mov10 like RNA helicase 1 involved_in ISO (MGI:4457283|PMID:20534472) RGD PMID:20534472 MGI:4457283 NCBI chr 7:120,070,171...120,135,406
Ensembl chr 7:120,070,135...120,134,765 		JBrowse link
G Mybl1 MYB proto-oncogene like 1 acts_upstream_of_positive_effect ISO (MGI:5495879|PMID:23523368) RGD PMID:23523368 MGI:5495879 NCBI chr 5:9,582,905...9,618,179
Ensembl chr 5:9,582,934...9,618,183 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (MGI:3778312|PMID:18381894) RGD PMID:18381894 MGI:3778312 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702 		JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3778312|PMID:18381894)		 UniProt
RGD		 PMID:18381894 GO_REF:0000024 MGI:3778312 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761 		JBrowse link
G Tdrd1 tudor domain containing 1 involved_in ISO (MGI:4356231|PMID:19465913) RGD PMID:19465913 MGI:4356231 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871 		JBrowse link
G Tdrd12 tudor domain containing 12 involved_in ISO (MGI:5516419|PMID:24067652) RGD PMID:24067652 MGI:5516419 NCBI chr 1:88,133,271...88,205,729
Ensembl chr 1:88,133,373...88,205,705 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:4946318|PMID:21383078)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21383078 GO_REF:0000024 GO_REF:0000107 MGI:4946318 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319 		JBrowse link
G Tdrd9 tudor domain containing 9 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4418580|PMID:20059948)		 UniProt
RGD		 PMID:20059948 GO_REF:0000024 MGI:4418580 NCBI chr 6:131,029,644...131,145,076
Ensembl chr 6:131,029,652...131,144,651 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    negative regulation of biological process 5812
      negative regulation of cellular process 5413
        retrotransposon silencing 29
          retrotransposon silencing by heterochromatin formation + 19
          retrotransposon silencing by mRNA destabilization + 5
Path 2
Term Annotations click to browse term
  biological_process 20413
    biological regulation 13755
      regulation of biological process 13322
        regulation of cellular process 12748
          negative regulation of cellular process 5413
            retrotransposon silencing 29
              retrotransposon silencing by heterochromatin formation + 19
              retrotransposon silencing by mRNA destabilization + 5
paths to the root