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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of autophagy
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Accession:GO:0010508 term browser browse the term
Definition:Any process that activates, maintains or increases the rate of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm.



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positive regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor IMP RGD PMID:22293957 RGD:7245565 NCBI chr20:4,148,150...4,151,361
Ensembl chr20:4,147,890...4,151,078
JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IMP
ISO
(MGI:6810795|PMID:24980959)
(PMID:21358617), (PMID:31123703), (PMID:32333458)
RGD PMID:21358617 PMID:24980959 PMID:31123703 PMID:32333458 PMID:25117440 MGI:6810795, RGD:11552604 NCBI chr 3:77,700,936...77,890,221
Ensembl chr 3:77,700,936...77,890,221
JBrowse link
G Atf6 activating transcription factor 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:28747345)
GO_REF:0000107
RGD
Ensembl
PMID:28747345 GO_REF:0000107 NCBI chr13:82,927,579...83,106,381
Ensembl chr13:82,930,034...83,107,177
JBrowse link
G Atg101 autophagy related 101 involved_in ISO
IEA
(MGI:6810791|PMID:19225151)
GO_REF:0000107
RGD
Ensembl
PMID:19225151 GO_REF:0000107 MGI:6810791 NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:132,398,483...132,407,633
JBrowse link
G Atg13 autophagy related 13 involved_in ISO (MGI:6810791|PMID:19225151)
(PMID:29487085)
RGD PMID:19225151 PMID:29487085 MGI:6810791 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO (MGI:6271293|PMID:30208760) RGD PMID:30208760 MGI:6271293 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg7 autophagy related 7 IDA
IMP
RGD PMID:24674959 PMID:25639566 RGD:11553823, RGD:11553824 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Becn1 beclin 1 involved_in IMP
ISS
ISO
GO_REF:0000024
(PMID:21358617)
UniProt
RGD
PMID:21358617 PMID:21490676 PMID:24674959 GO_REF:0000024, RGD:6483070, RGD:11553823 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Ccny cyclin Y involved_in ISO (PMID:32098961) RGD PMID:32098961 NCBI chr17:57,385,002...57,512,860
Ensembl chr17:57,384,176...57,522,378
JBrowse link
G Cdk16 cyclin-dependent kinase 16 involved_in ISO
IEA
(PMID:32098961)
GO_REF:0000107
RGD
Ensembl
PMID:32098961 GO_REF:0000107 NCBI chr  X:1,492,814...1,504,309
Ensembl chr  X:1,492,814...1,504,148
JBrowse link
G Dapk1 death associated protein kinase 1 involved_in ISO (PMID:22095288) RGD PMID:22095288 NCBI chr17:3,930,223...4,090,991
Ensembl chr17:3,930,213...4,090,991
JBrowse link
G Dcn decorin involved_in ISO (PMID:23798385) RGD PMID:23798385 NCBI chr 7:32,281,252...32,321,291
Ensembl chr 7:32,281,252...32,321,270
JBrowse link
G Depdc5 DEP domain containing 5, GATOR1 subcomplex subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:77,732,297...77,862,924
Ensembl chr14:77,732,297...77,862,794
JBrowse link
G Deptor DEP domain containing MTOR-interacting protein involved_in ISO (PMID:22017875), (PMID:22017876), (PMID:22017877) RGD PMID:22017875 PMID:22017876 PMID:22017877 NCBI chr 7:86,514,859...86,668,817
Ensembl chr 7:86,514,988...86,667,773
JBrowse link
G Dhrsx dehydrogenase/reductase X-linked involved_in ISO
IBA
(PMID:25076851)
GO_REF:0000033
RGD
GO_Central
PMID:25076851 GO_REF:0000033 NCBI chr12:16,299,768...16,304,553
Ensembl chr12:16,299,808...16,304,552
JBrowse link
G Endog endonuclease G involved_in ISO (PMID:33473107)
(MGI:6504770|PMID:33473107)
RGD PMID:33473107 MGI:6504770 NCBI chr 3:13,449,113...13,451,715
Ensembl chr 3:13,449,086...13,451,932
JBrowse link
G Flcn folliculin involved_in ISO
ISS
(PMID:25126726)
GO_REF:0000024
RGD
UniProt
PMID:25126726 GO_REF:0000024 NCBI chr10:44,588,621...44,607,808
Ensembl chr10:44,588,624...44,607,769
JBrowse link
G Foxo1 forkhead box O1 involved_in ISO
ISS
(PMID:20543840)
GO_REF:0000024
RGD
UniProt
PMID:20543840 GO_REF:0000024 NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790
JBrowse link
G Foxo3 forkhead box O3 involved_in ISO (MGI:3771642|PMID:18054316), (MGI:3771681|PMID:18054315) RGD PMID:18054315 PMID:18054316 MGI:3771642 MGI:3771681 NCBI chr20:45,669,708...45,764,606
Ensembl chr20:45,672,995...45,764,561
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:5319706|PMID:22539723)
UniProt
Ensembl
RGD
PMID:22539723 GO_REF:0000024 GO_REF:0000107 MGI:5319706 NCBI chr 1:80,815,843...80,825,732
Ensembl chr 1:80,815,850...80,825,802
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISS
ISO
GO_REF:0000024
RNAcentral:URS0000554A4F_10090 (MGI:5319706|PMID:22539723), (MGI:5825416|PMID:26160071)
UniProt
RGD
PMID:22539723 PMID:26160071 GO_REF:0000024 MGI:5319706 MGI:5825416 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in ISO (MGI:3796473|PMID:18281291) RGD PMID:18281291 MGI:3796473 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Hmgb1 high mobility group box 1 involved_in IMP
ISO
(MGI:5634889|PMID:20819940)
(PMID:20819940)
RGD PMID:20819940 PMID:23604926 MGI:5634889, RGD:10402086 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565
JBrowse link
G Ifnb1 interferon beta 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5695780|PMID:26451483)
UniProt
RGD
PMID:26451483 GO_REF:0000024 MGI:5695780 NCBI chr 5:103,020,758...103,021,595
Ensembl chr 5:103,020,969...103,021,523
JBrowse link
G Ifng interferon gamma involved_in ISO
ISS
(PMID:23629966), (PMID:26347139)
GO_REF:0000024
RGD
UniProt
PMID:23629966 PMID:26347139 GO_REF:0000024 NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
G Irgm immunity-related GTPase M involved_in ISS
ISO
GO_REF:0000024
(MGI:3656111|PMID:16888103), (MGI:4354422|PMID:19620982), (MGI:6246109|PMID:24751652), (MGI:6840077|PMID:22874556)
(PMID:16888103), (PMID:25891078), (PMID:28389568), (PMID:29420192)
UniProt
RGD
PMID:16888103 PMID:19620982 PMID:22874556 PMID:24751652 PMID:25891078 More... GO_REF:0000024 MGI:3656111 MGI:4354422 MGI:6246109 MGI:6840077 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:5319706|PMID:22539723)
(PMID:30704899)
UniProt
RGD
PMID:22539723 PMID:30704899 GO_REF:0000024 MGI:5319706 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:22012985)
(MGI:4454597|PMID:20457918)
RGD PMID:20457918 PMID:22012985 MGI:4454597 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IDA RGD PMID:26581593 RGD:12879823 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 IMP RGD PMID:35078016 RGD:155804282 NCBI chr 5:46,356,973...46,415,597
Ensembl chr 5:46,357,931...46,415,597
JBrowse link
G Mefv MEFV innate immunity regulator, pyrin involved_in ISS
ISO
GO_REF:0000024
(PMID:26347139)
UniProt
RGD
PMID:26347139 GO_REF:0000024 NCBI chr10:11,786,948...11,796,977
Ensembl chr10:11,787,422...11,796,973
JBrowse link
G Mid2 midline 2 involved_in ISO (PMID:26347139) RGD PMID:26347139 NCBI chr  X:104,354,692...104,456,757
Ensembl chr  X:104,355,316...104,453,473
JBrowse link
G Mir222 microRNA 222 IMP RGD PMID:33792838 RGD:152025536 NCBI chr  X:3,428,904...3,429,006
Ensembl chr  X:3,428,904...3,429,006
JBrowse link
G Mtdh metadherin involved_in ISO
IEA
(PMID:21127263)
GO_REF:0000107
RGD
Ensembl
PMID:21127263 GO_REF:0000107 NCBI chr 7:65,306,464...65,365,647
Ensembl chr 7:65,306,400...65,364,413
JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 involved_in ISO (MGI:4437194|PMID:19898471) RGD PMID:19898471 MGI:4437194 NCBI chr 4:84,060,871...84,111,668
Ensembl chr 4:84,060,880...84,111,404
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (MGI:4437194|PMID:19898471), (MGI:7484279|PMID:19966812) RGD PMID:19898471 PMID:19966812 MGI:4437194 MGI:7484279 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Nprl2 NPR2-like, GATOR1 complex subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:108,215,823...108,218,996
Ensembl chr 8:108,215,814...108,218,996
JBrowse link
G Nprl3 NPR3-like, GATOR1 complex subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:15,355,361...15,395,812
Ensembl chr10:15,355,355...15,395,810
JBrowse link
G Optn optineurin involved_in ISO (PMID:21617041) RGD PMID:21617041 NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251
JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:28747345)
MGI:6369059 (MGI:6099440|PMID:28747345)
Ensembl
RGD
PMID:28747345 GO_REF:0000107 MGI:6099440 NCBI chr10:83,590,052...83,596,035
Ensembl chr10:83,590,071...83,598,620
JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha involved_in ISO (PMID:28910396) RGD PMID:28910396 NCBI chr 1:170,577,942...170,684,353
Ensembl chr 1:170,577,942...170,683,472
JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase involved_in ISO (MGI:4361989|PMID:17476689) RGD PMID:17476689 MGI:4361989 NCBI chr  X:14,617,582...14,622,851
Ensembl chr  X:14,617,582...14,622,851
JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 involved_in ISO
IBA
(PMID:22115783)
GO_REF:0000033
RGD
GO_Central
PMID:22115783 GO_REF:0000033 NCBI chr 1:90,908,304...90,915,862
Ensembl chr 1:90,904,742...90,915,820
JBrowse link
G Plk2 polo-like kinase 2 involved_in ISO
IEA
(PMID:23983262)
GO_REF:0000107
RGD
Ensembl
PMID:23983262 GO_REF:0000107 NCBI chr 2:41,969,176...41,974,945
Ensembl chr 2:41,969,176...41,974,947
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:22012985), (PMID:25891078), (PMID:26103054)
(MGI:5285135|PMID:21258367)
UniProt
RGD
PMID:21258367 PMID:22012985 PMID:25891078 PMID:26103054 GO_REF:0000024 MGI:5285135 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5285135|PMID:21258367)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21258367 GO_REF:0000024 GO_REF:0000107 MGI:5285135 NCBI chr 5:119,807,992...119,879,987
Ensembl chr 5:119,813,226...119,879,543
JBrowse link
G Prkd1 protein kinase D1 involved_in ISO (PMID:22095288) RGD PMID:22095288 NCBI chr 6:67,725,193...68,039,002
Ensembl chr 6:67,725,905...68,039,042
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in ISO (MGI:6810791|PMID:19225151) RGD PMID:19225151 MGI:6810791 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Rfpl4a ret finger protein-like 4A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:68,728,964...68,735,423
Ensembl chr 1:68,728,964...68,735,423
JBrowse link
G Rnf152 ring finger protein 152 involved_in ISO
IBA
ISS
(PMID:25936802)
GO_REF:0000033
(MGI:5644195|PMID:25936802)
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:25936802 GO_REF:0000024 GO_REF:0000033 MGI:5644195 NCBI chr13:21,324,039...21,403,405
Ensembl chr13:21,323,824...21,403,113
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in ISO
IEA
UniProtKB:Q14457 (PMID:27853422)
GO_REF:0000107
RGD
Ensembl
PMID:27853422 GO_REF:0000107 NCBI chr18:1,114,532...1,236,345
Ensembl chr18:1,115,905...1,235,571
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:36359729) RGD PMID:36359729 NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489
JBrowse link
G Sh3bp4 SH3-domain binding protein 4 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22575674)
UniProt
Ensembl
RGD
PMID:22575674 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:89,660,156...89,739,163
Ensembl chr 9:89,660,156...89,739,163
JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO (PMID:17891140)
(MGI:3770552|PMID:17891140)
RGD PMID:17891140 MGI:3770552 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784
JBrowse link
G Slc35d3 solute carrier family 35, member D3 involved_in ISO (MGI:6851482|PMID:27171858) RGD PMID:27171858 MGI:6851482 NCBI chr 1:14,565,482...14,573,581
Ensembl chr 1:14,569,687...14,573,159
JBrowse link
G Smo smoothened, frizzled class receptor IDA RGD PMID:31221056 RGD:150521664 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO (PMID:28871090) RGD PMID:28871090 NCBI chr10:34,525,517...34,536,670
Ensembl chr10:34,525,519...34,536,673
JBrowse link
G Stk11 serine/threonine kinase 11 involved_in ISO (PMID:23878245) RGD PMID:23878245 NCBI chr 7:9,574,553...9,591,315
Ensembl chr 7:9,575,269...9,591,315
JBrowse link
G Svip small VCP interacting protein involved_in ISO
IBA
IEA
(PMID:21909394)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:21909394 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:101,587,128...101,592,818
Ensembl chr 1:101,587,128...101,593,116
JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in ISO (PMID:28871090) RGD PMID:28871090 NCBI chr 7:57,077,830...57,110,868
Ensembl chr 7:57,077,830...57,110,892
JBrowse link
G Tfeb transcription factor EB involved_in ISO (PMID:21617040), (PMID:22576015), (PMID:23434374) RGD PMID:21617040 PMID:22576015 PMID:23434374 NCBI chr 9:13,198,890...13,254,726
Ensembl chr 9:13,198,891...13,254,714
JBrowse link
G Ticam1 TIR domain containing adaptor molecule 1 involved_in ISO (MGI:3718934|PMID:17658277) RGD PMID:17658277 MGI:3718934 NCBI chr 9:1,102,559...1,111,023
Ensembl chr 9:1,102,366...1,123,147
JBrowse link
G Tlr9 toll-like receptor 9 IDA RGD PMID:18632594 RGD:2301341 NCBI chr 8:106,864,680...106,868,796
Ensembl chr 8:106,864,680...106,868,796
JBrowse link
G Tmem59 transmembrane protein 59 involved_in ISO
IBA
(PMID:23376921)
GO_REF:0000033
RGD
GO_Central
PMID:23376921 GO_REF:0000033 NCBI chr 5:121,962,507...121,983,625
Ensembl chr 5:121,962,440...121,983,625
JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in ISO
IEA
ISS
(PMID:22421968), (PMID:22470510)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:22421968 PMID:22470510 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:24,260,568...24,267,968
JBrowse link
G Tpcn1 two pore segment channel 1 involved_in ISO
IEA
(PMID:22012985)
GO_REF:0000107
RGD
Ensembl
PMID:22012985 GO_REF:0000107 NCBI chr12:35,972,813...36,029,632
Ensembl chr12:35,972,846...36,029,626
JBrowse link
G Trim21 tripartite motif-containing 21 involved_in ISO
IBA
(PMID:26347139)
GO_REF:0000033
RGD
GO_Central
PMID:26347139 GO_REF:0000033 NCBI chr 1:156,964,896...156,987,504
Ensembl chr 1:156,964,913...156,987,440
JBrowse link
G Trim23 tripartite motif-containing 23 involved_in IEA
ISO
GO_REF:0000107
(PMID:28871090)
Ensembl
RGD
PMID:28871090 GO_REF:0000107 NCBI chr 2:35,302,405...35,335,746
Ensembl chr 2:35,302,409...35,335,743
JBrowse link
G Trim30c tripartite motif-containing 30C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:158,766,401...158,787,915
Ensembl chr 1:158,765,969...158,787,183
JBrowse link
G Trim30d tripartite motif-containing 30D involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 1:158,795,288...158,813,913
Ensembl chr 1:158,720,410...158,814,012
JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:31123703) RGD PMID:31123703 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:78,999,389...79,022,018
JBrowse link
G Trim34 tripartite motif-containing 34 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:158,707,172...158,720,214
Ensembl chr 1:158,707,172...158,718,674
JBrowse link
G Trim5 tripartite motif-containing 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:158,720,407...158,737,393
Ensembl chr 1:158,720,410...158,814,012
JBrowse link
G Trim58 tripartite motif-containing 58 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:43,022,933...43,038,984
Ensembl chr10:43,022,996...43,034,476
JBrowse link
G Trim6 tripartite motif containing 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:158,683,746...158,696,936
Ensembl chr 1:158,683,746...158,696,914
JBrowse link
G Trim65 tripartite motif-containing 65 involved_in ISO
IBA
(PMID:26347139)
GO_REF:0000033
RGD
GO_Central
PMID:26347139 GO_REF:0000033 NCBI chr10:101,357,937...101,364,036
Ensembl chr10:101,357,937...101,364,971
JBrowse link
G Trim68 tripartite motif containing 68 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:157,114,044...157,127,494
Ensembl chr 1:157,114,044...157,127,477
JBrowse link
G Trim8 tripartite motif-containing 8 involved_in ISO (PMID:26347139) RGD PMID:26347139 NCBI chr 1:245,369,632...245,384,513
Ensembl chr 1:245,369,632...245,384,513
JBrowse link
G Tsc2 TSC complex subunit 2 involved_in ISO (MGI:5509101|PMID:23878245) RGD PMID:23878245 MGI:5509101 NCBI chr10:13,621,135...13,655,773
Ensembl chr10:13,621,136...13,655,951
JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5818653|PMID:25952549)
UniProt
RGD
PMID:25952549 GO_REF:0000024 MGI:5818653 NCBI chr 5:38,962,721...38,995,134
Ensembl chr 5:38,962,171...38,995,199
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO
IBA
(MGI:5319706|PMID:22539723), (MGI:6810791|PMID:19225151)
GO_REF:0000033
(PMID:25126726), (PMID:29487085), (PMID:35670107)
RGD
GO_Central
PMID:19225151 PMID:22539723 PMID:25126726 PMID:29487085 PMID:35670107 GO_REF:0000033 MGI:5319706 MGI:6810791 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Usp20 ubiquitin specific peptidase 20 involved_in ISO (PMID:29487085) RGD PMID:29487085 NCBI chr 3:14,272,737...14,306,409
Ensembl chr 3:14,272,908...14,306,409
JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISO (PMID:23184933) RGD PMID:23184933 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISO (PMID:22739135)
(MGI:5487497|PMID:22739135)
RGD PMID:22739135 MGI:5487497 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351
JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BAG cochaperone 3 involved_in ISO (PMID:18006506) RGD PMID:18006506 NCBI chr 1:183,103,038...183,126,862
Ensembl chr 1:183,102,871...183,126,858
JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:22017874)
UniProt
RGD
PMID:22017874 GO_REF:0000024 NCBI chr 3:140,709,984...140,756,757
Ensembl chr 3:140,709,991...140,756,696
JBrowse link
G Hspb8 heat shock protein family B (small) member 8 involved_in ISO (PMID:18006506) RGD PMID:18006506 NCBI chr12:40,176,405...40,205,002
Ensembl chr12:40,176,532...40,191,185
JBrowse link
G Htt huntingtin involved_in IEA
ISO
GO_REF:0000107
(PMID:25686248)
Ensembl
RGD
PMID:25686248 GO_REF:0000107 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA
ISO
GO_REF:0000107
(PMID:31857589)
Ensembl
RGD
PMID:31857589 GO_REF:0000107 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G Zdhhc19 zinc finger DHHC-type palmitoyltransferase 19 involved_in IEA
ISO
GO_REF:0000107
(PMID:37802024)
Ensembl
RGD
PMID:37802024 GO_REF:0000107 NCBI chr11:68,277,847...68,289,110
Ensembl chr11:68,277,848...68,288,954
JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO (PMID:30952800), (PMID:31271352) RGD PMID:30952800 PMID:31271352 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) RGD PMID:21072319 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) RGD PMID:25484098 NCBI chr 3:16,223,367...16,264,261
Ensembl chr 3:16,223,367...16,264,154
JBrowse link
G Moap1 modulator of apoptosis 1 involved_in ISO (PMID:33783314)
(MGI:6810697|PMID:33783314)
RGD PMID:33783314 MGI:6810697 NCBI chr 6:121,882,565...121,884,500
Ensembl chr 6:121,882,366...121,898,643
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029
JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938
JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr 7:63,020,004...63,035,086
Ensembl chr 7:63,020,000...63,035,078
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
ISS
IEA
(PMID:25495476)
GO_REF:0000024
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:25495476)
GO_REF:0000107
GO_Central
RGD
Ensembl
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478
JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA
(PMID:24056301)
GO_REF:0000107
RGD
Ensembl
PMID:24056301 GO_REF:0000107 NCBI chr13:30,588,036...30,624,199
Ensembl chr13:30,588,033...30,624,202
JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA
(PMID:21068542)
(MGI:5634888|PMID:21068542)
GO_REF:0000107
RGD
Ensembl
PMID:21068542 GO_REF:0000107 MGI:5634888 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784
JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) RGD PMID:29437695 NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:45,232,325...45,258,345
JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO (PMID:32513819) RGD PMID:32513819 NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:74,684,015...74,792,631
JBrowse link
G Snx4 sorting nexin 4 involved_in ISO
IBA
(PMID:32513819), (PMID:33468622)
GO_REF:0000033
RGD
GO_Central
PMID:32513819 PMID:33468622 GO_REF:0000033 NCBI chr11:67,460,872...67,518,143
Ensembl chr11:67,460,870...67,518,174
JBrowse link
G Snx7 sorting nexin 7 involved_in ISO (PMID:32513819) RGD PMID:32513819 NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:205,842,837...205,927,763
JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:78,999,389...79,022,018
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
ISS
IEA
(PMID:31271352)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:31271352 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:14,776,280...14,782,202
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:31271352) RGD PMID:31271352 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07025818.1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr16:48,598,506...48,599,444 JBrowse link
G Adrb2 adrenoceptor beta 2 involved_in ISO
IEA
ISS
(PMID:23708524)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
GO_Central
PMID:23708524 GO_REF:0000024 GO_REF:0000107 NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512
JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:25771791) RGD PMID:25771791 NCBI chr10:81,055,467...81,069,298 JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO MGI:5648633 (MGI:5603233|PMID:24949970) RGD PMID:24949970 MGI:5603233 NCBI chr10:4,927,799...5,123,749
Ensembl chr10:4,928,030...5,123,578
JBrowse link
G ENSRNOG00000066153 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr10:81,068,011...81,069,397 JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in ISO
IBA
(PMID:26468287)
GO_REF:0000033
RGD
GO_Central
PMID:26468287 GO_REF:0000033 NCBI chr 8:123,412,105...123,479,315
Ensembl chr 8:123,412,112...123,479,021
JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:16888103)
(MGI:3656111|PMID:16888103)
RGD PMID:16888103 MGI:3656111 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,457,605...45,468,876
JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) RGD PMID:23023224 NCBI chr19:13,405,482...13,440,384
Ensembl chr19:13,405,501...13,440,384
JBrowse link
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l11 Bcl2-like 11 IMP RGD PMID:25772147 RGD:13782257 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Bid BH3 interacting domain death agonist IMP RGD PMID:25772147 RGD:13782257 NCBI chr 4:154,113,198...154,136,353
Ensembl chr 4:154,113,198...154,134,720
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 IMP RGD PMID:25772147 RGD:13782257 NCBI chr 7:63,115,645...63,121,203
Ensembl chr 7:63,116,380...63,121,201
JBrowse link
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 IMP RGD PMID:23698117 RGD:11561968 NCBI chr 1:193,708,164...193,725,348
Ensembl chr 1:193,708,167...193,725,359
JBrowse link
G Fbxo7 F-box protein 7 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:17,809,224...17,837,549
Ensembl chr 7:17,809,231...17,837,530
JBrowse link
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plk3 polo-like kinase 3 involved_in ISO (PMID:27344333) RGD PMID:27344333 NCBI chr 5:130,607,142...130,612,317
Ensembl chr 5:130,607,142...130,612,317
JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:23708524)
GO_REF:0000107
GO_Central
RGD
Ensembl
PMID:23708524 GO_REF:0000024 GO_REF:0000107 NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512
JBrowse link
G Htt huntingtin involved_in ISO
IEA
(PMID:25686248)
GO_REF:0000107
RGD
Ensembl
PMID:25686248 GO_REF:0000107 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Sesn2 sestrin 2 acts_upstream_of_or_within ISO MGI:3587950 (MGI:5444071|PMID:22958918) RGD PMID:22958918 MGI:5444071 NCBI chr 5:144,702,287...144,721,241
Ensembl chr 5:144,701,530...144,721,260
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 acts_upstream_of_or_within ISO (PMID:25332431) RGD PMID:25332431 NCBI chr17:11,877,249...11,916,295
Ensembl chr17:11,877,249...11,916,295
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:25332431)
GO_REF:0000107
RGD
Ensembl
PMID:25332431 GO_REF:0000107 NCBI chr 6:106,948,682...107,031,532
Ensembl chr 6:106,950,949...107,031,542
JBrowse link
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 acts_upstream_of_or_within ISO UniProtKB:O60238 (PMID:19273585) RGD PMID:19273585 NCBI chr 1:193,708,164...193,725,348
Ensembl chr 1:193,708,167...193,725,359
JBrowse link
G Bnip3l BCL2 interacting protein 3 like acts_upstream_of_or_within ISO UniProtKB:Q12983 (PMID:19273585) RGD PMID:19273585 NCBI chr15:41,174,594...41,197,730
Ensembl chr15:41,174,594...41,197,803
JBrowse link
G Dcn decorin acts_upstream_of_or_within
involved_in
ISO
IEA
UniProtKB:P35968 (PMID:23798385)
GO_REF:0000107
RGD
Ensembl
PMID:23798385 GO_REF:0000107 NCBI chr 7:32,281,252...32,321,291
Ensembl chr 7:32,281,252...32,321,270
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:102548|MGI:2182627 (MGI:4457987|PMID:20453062)
GO_REF:0000107
(PMID:20453062)
RGD
Ensembl
PMID:20453062 GO_REF:0000107 MGI:4457987 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555
JBrowse link
G Gnai3 G protein subunit alpha i3 involved_in ISO
IEA
(PMID:12642577)
GO_REF:0000107
RGD
Ensembl
PMID:12642577 GO_REF:0000107 NCBI chr 2:195,742,765...195,780,720
Ensembl chr 2:195,742,642...195,780,742
JBrowse link
G Gpsm1 G-protein signaling modulator 1 involved_in ISO (PMID:12642577) RGD PMID:12642577 NCBI chr 3:9,140,816...9,167,828
Ensembl chr 3:9,128,636...9,167,827
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO MGI:2386679 (MGI:3847365|PMID:19273585) RGD PMID:19273585 MGI:3847365 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2429784 (MGI:5430482|PMID:20705711)
GO_REF:0000107
RGD
Ensembl
PMID:20705711 GO_REF:0000107 MGI:5430482 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079
JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in ISO (MGI:5819337|PMID:23778976) RGD PMID:23778976 MGI:5819337 NCBI chr  X:152,216,485...152,241,476
Ensembl chr  X:152,216,596...152,239,499
JBrowse link
G Il4 interleukin 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:5702366|PMID:26416964)
UniProt
RGD
PMID:26416964 GO_REF:0000024 MGI:5702366 NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within
involved_in
ISO
IEA
UniProtKB:P07585 (PMID:23798385)
GO_REF:0000107
RGD
Ensembl
PMID:23798385 GO_REF:0000107 NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018
JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr10:42,191,378...42,246,361
Ensembl chr10:42,191,325...42,243,371
JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 involved_in ISO (MGI:5819337|PMID:23778976) RGD PMID:23778976 MGI:5819337 NCBI chr 5:46,356,973...46,415,597
Ensembl chr 5:46,357,931...46,415,597
JBrowse link
G Pafah1b2 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 8:46,260,069...46,312,073
Ensembl chr 8:46,261,064...46,279,833
JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO (MGI:4361989|PMID:17476689) RGD PMID:17476689 MGI:4361989 NCBI chr  X:14,617,582...14,622,851
Ensembl chr  X:14,617,582...14,622,851
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:20871098) RGD PMID:20871098 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISO (MGI:5574288|PMID:23357852) RGD PMID:23357852 MGI:5574288 NCBI chr 9:106,480,301...106,506,895
Ensembl chr 9:106,480,301...106,506,910
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS
UniProtKB:Q96DA2 (PMID:27103069), (PMID:27334615)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27103069 PMID:27334615 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408
JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO
IBA
(PMID:26416964)
GO_REF:0000033
RGD
GO_Central
PMID:26416964 GO_REF:0000033 NCBI chr 9:75,702,937...75,727,719
Ensembl chr 9:75,703,750...75,723,525
JBrowse link
G Scoc short coiled-coil protein involved_in ISO
ISS
(PMID:22354037)
GO_REF:0000024
RGD
GO_Central
PMID:22354037 GO_REF:0000024 NCBI chr19:24,659,651...24,689,237
Ensembl chr19:24,659,651...24,693,217
JBrowse link
G Sesn1 sestrin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:45,294,876...45,387,698
Ensembl chr20:45,294,871...45,387,697
JBrowse link
G Sesn2 sestrin 2 involved_in ISO
IBA
(PMID:23274085)
GO_REF:0000033
RGD
GO_Central
PMID:23274085 GO_REF:0000033 NCBI chr 5:144,702,287...144,721,241
Ensembl chr 5:144,701,530...144,721,260
JBrowse link
G Sesn3 sestrin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:11,133,822...11,189,436
Ensembl chr 8:11,133,678...11,185,842
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA
(PMID:18296641)
GO_REF:0000107
(MGI:3776699|PMID:18296641), (MGI:4940431|PMID:21189328)
RGD
Ensembl
PMID:18296641 PMID:21189328 GO_REF:0000107 MGI:3776699 MGI:4940431 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
IBA
ISO
IEA
GO_REF:0000024
GO_REF:0000033
(PMID:30568238), (PMID:30842662), (PMID:37535724)
GO_REF:0000107
(MGI:6305034|PMID:30568238)
UniProt
GO_Central
RGD
Ensembl
PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:6305034 NCBI chr18:27,332,119...27,338,371
Ensembl chr18:27,332,119...27,338,335
JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892
JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in ISO (PMID:27103069) RGD PMID:27103069 NCBI chr 7:57,077,830...57,110,868
Ensembl chr 7:57,077,830...57,110,892
JBrowse link
G Trim13 tripartite motif-containing 13 involved_in ISO
IBA
IEA
(PMID:22178386)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:22178386 GO_REF:0000033 GO_REF:0000107 NCBI chr15:35,733,548...35,772,676
Ensembl chr15:35,734,107...35,772,677
JBrowse link
G Tsc1 TSC complex subunit 1 IDA RGD PMID:23435171 RGD:10448950 NCBI chr 3:11,969,547...12,018,591
Ensembl chr 3:11,979,729...12,015,674
JBrowse link
G Tsc2 TSC complex subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:4457987|PMID:20453062)
(MGI:5819337|PMID:23778976)
UniProtKB:Q61037 (PMID:23778976)
Ensembl
RGD
PMID:20453062 PMID:23778976 GO_REF:0000107 MGI:4457987 MGI:5819337 NCBI chr10:13,621,135...13,655,773
Ensembl chr10:13,621,136...13,655,951
JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr17:55,922,686...55,984,286
Ensembl chr17:55,923,123...55,982,301
JBrowse link
G Wdr24 WD repeat domain 24 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:14,844,089...14,848,871
Ensembl chr10:14,843,728...14,848,864
JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:30217973) RGD PMID:30217973 NCBI chr 3:77,700,936...77,890,221
Ensembl chr 3:77,700,936...77,890,221
JBrowse link
G Cers1 ceramide synthase 1 involved_in ISO (PMID:22922758) RGD PMID:22922758 NCBI chr16:19,097,309...19,112,519
Ensembl chr16:19,104,466...19,112,519
JBrowse link
G Fbxo7 F-box protein 7 involved_in IMP
ISO
PMID:26310625
(PMID:26310625)
RGD PMID:26310625 PMID:26310625 RGD:11536096 NCBI chr 7:17,809,224...17,837,549
Ensembl chr 7:17,809,231...17,837,530
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in IEA
ISO
GO_REF:0000107
(MGI:3796473|PMID:18281291)
Ensembl
RGD
PMID:18281291 GO_REF:0000107 MGI:3796473 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Htt huntingtin involved_in IEA
ISO
GO_REF:0000107
(PMID:25686248)
Ensembl
RGD
PMID:25686248 GO_REF:0000107 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Irgm immunity-related GTPase M involved_in ISS
ISO
GO_REF:0000024
(MGI:6705154|PMID:33510463)
(PMID:21102437)
(PMID:32939830)
UniProt
RGD
PMID:21102437 PMID:32939830 PMID:33510463 GO_REF:0000024 MGI:6705154 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (MGI:6388731|PMID:31919280) RGD PMID:31919280 MGI:6388731 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IMP
ISO
IEA
(PMID:26310625)
GO_REF:0000107
RGD
Ensembl
PMID:26310625 PMID:28608965 GO_REF:0000107, RGD:13432560 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
G Slc25a4 solute carrier family 25 member 4 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:6407583|PMID:31618756)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:31618756 GO_REF:0000024 GO_REF:0000107 MGI:6407583 NCBI chr16:46,072,935...46,076,730
Ensembl chr16:46,072,939...46,076,733
JBrowse link
G Slc25a5 solute carrier family 25 member 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:6407583|PMID:31618756)
UniProt
RGD
PMID:31618756 GO_REF:0000024 MGI:6407583 NCBI chr  X:116,031,896...116,034,963
Ensembl chr  X:116,031,803...116,034,967
JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D involved_in ISO (PMID:29307555) RGD PMID:29307555 NCBI chr 5:156,830,509...157,055,895
Ensembl chr 5:156,830,512...157,055,891
JBrowse link
positive regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vdac1 voltage-dependent anion channel 1 involved_in ISO (PMID:32047033) RGD PMID:32047033 NCBI chr10:36,532,306...36,559,642
Ensembl chr10:36,532,244...36,559,640
JBrowse link
positive regulation of xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgm immunity-related GTPase M involved_in ISO (PMID:25891078) RGD PMID:25891078 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:23245322) RGD PMID:23245322 NCBI chr 3:16,223,367...16,264,261
Ensembl chr 3:16,223,367...16,264,154
JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (MGI:5299952|PMID:22033934) RGD PMID:22033934 MGI:5299952 NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:181,366,637...181,372,863
JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 acts_upstream_of_or_within ISO MGI:2674231 (MGI:5299952|PMID:22033934) RGD PMID:22033934 MGI:5299952 NCBI chr 4:84,060,871...84,111,668
Ensembl chr 4:84,060,880...84,111,404
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of_or_within ISO MGI:3529594 (MGI:5299952|PMID:22033934) RGD PMID:22033934 MGI:5299952 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Optn optineurin involved_in ISO
IEA
(PMID:21617041)
GO_REF:0000107
RGD
Ensembl
PMID:21617041 GO_REF:0000107 NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251
JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 acts_upstream_of_or_within ISO MGI:2660793 (MGI:5299952|PMID:22033934) RGD PMID:22033934 MGI:5299952 NCBI chr 5:29,630,806...29,662,804
Ensembl chr 5:29,631,570...29,662,657
JBrowse link
G Rnf31 ring finger protein 31 involved_in ISO (PMID:28481331) RGD PMID:28481331 NCBI chr15:29,083,047...29,095,328
Ensembl chr15:29,083,631...29,101,915
JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in ISO (MGI:5645201|PMID:21617041) RGD PMID:21617041 MGI:5645201 NCBI chr 7:57,077,830...57,110,868
Ensembl chr 7:57,077,830...57,110,892
JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO MGI:2674036 (MGI:5299952|PMID:22033934) RGD PMID:22033934 MGI:5299952 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20325
    cellular process 18797
      process utilizing autophagic mechanism 531
        autophagy 531
          positive regulation of autophagy 157
            induction by virus of host autophagy + 0
            positive regulation of autophagy in response to ER overload 3
            positive regulation of autophagy of mitochondrion + 13
            positive regulation of chaperone-mediated autophagy 1
            positive regulation of macroautophagy + 84
Path 2
Term Annotations click to browse term
  biological_process 20325
    biological regulation 13633
      regulation of biological process 13227
        regulation of metabolic process 6585
          regulation of cellular metabolic process 6117
            regulation of cellular catabolic process 733
              regulation of autophagy 305
                positive regulation of autophagy 157
                  induction by virus of host autophagy + 0
                  positive regulation of autophagy in response to ER overload 3
                  positive regulation of autophagy of mitochondrion + 13
                  positive regulation of chaperone-mediated autophagy 1
                  positive regulation of macroautophagy + 84
paths to the root