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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of autophagy
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Accession:GO:0010506 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm.


show annotations for term's descendants           Sort by:
regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in TAS (PMID:20841568) UniProt PMID:20841568 NCBI chr 9:130,713,043...130,887,675
Ensembl chr 9:130,713,043...130,887,675 		JBrowse link
G ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase involved_in TAS (PMID:20841568) UniProt PMID:20841568 NCBI chr 1:179,099,330...179,229,677
Ensembl chr 1:179,099,330...179,229,684 		JBrowse link
G ACER2 alkaline ceramidase 2 involved_in IMP (PMID:28294157) UniProt PMID:28294157 NCBI chr 9:19,409,009...19,452,505
Ensembl chr 9:19,409,009...19,452,505 		JBrowse link
G ATM ATM serine/threonine kinase involved_in IEA
IMP		 (PMID:23878245) Ensembl
ParkinsonsUK-UCL		 PMID:23878245 GO_REF:0000107 NCBI chr11:108,223,067...108,369,102
Ensembl chr11:108,222,823...108,369,102 		JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:63,123,346...63,320,090
Ensembl chr18:63,123,346...63,320,128 		JBrowse link
G BECN1 beclin 1 involved_in IDA (PMID:16799551), (PMID:18797192) ComplexPortal PMID:16799551 PMID:18797192 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G BOK BCL2 family apoptosis regulator BOK involved_in IMP (PMID:24113155) UniProt PMID:24113155 NCBI chr 2:241,551,393...241,574,131
Ensembl chr 2:241,551,424...241,574,131 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA
NAS
IMP		 (PMID:27617292)
(PMID:27103069)		 Ensembl
ComplexPortal
UniProt		 PMID:27103069 PMID:27617292 GO_REF:0000107 NCBI chr 9:27,546,546...27,573,866
Ensembl chr 9:27,535,640...27,573,866 		JBrowse link
G CASP1 caspase 1 acts_upstream_of_or_within ISO (PMID:24581500) MGI PMID:24581500 NCBI chr11:105,025,443...105,036,686
Ensembl chr11:105,025,397...105,035,250 		JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:33,811,348...33,854,366
Ensembl chr20:33,811,348...33,854,366 		JBrowse link
G CISD1 CDGSH iron sulfur domain 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr10:58,269,162...58,289,586
Ensembl chr10:58,269,162...58,289,586 		JBrowse link
G CISD2 CDGSH iron sulfur domain 2 involved_in IEA
IMP		 (PMID:20010695) InterPro
UniProt		 PMID:20010695 GO_REF:0000002 GO_REF:0000104 NCBI chr 4:102,868,992...102,892,807
Ensembl chr 4:102,868,974...102,892,807 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:28,466,653...28,492,082
Ensembl chr16:28,474,111...28,495,575 		JBrowse link
G CRYBA1 crystallin beta A1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:21266465 GO_REF:0000107 RGD:126925759 NCBI chr17:29,246,859...29,254,494
Ensembl chr17:29,246,859...29,254,494 		JBrowse link
G DAPK1 death associated protein kinase 1 involved_in TAS (PMID:16756490) UniProt PMID:16756490 NCBI chr 9:87,497,228...87,708,634
Ensembl chr 9:87,497,228...87,708,634 		JBrowse link
G DAPK2 death associated protein kinase 2 involved_in TAS (PMID:16756490) UniProt PMID:16756490 NCBI chr15:63,907,036...64,046,485
Ensembl chr15:63,907,036...64,072,033 		JBrowse link
G DAPK3 death associated protein kinase 3 involved_in TAS (PMID:16756490) UniProt PMID:16756490 NCBI chr19:3,958,453...3,971,099
Ensembl chr19:3,958,453...3,971,123 		JBrowse link
G DCAF12 DDB1 and CUL4 associated factor 12 acts_upstream_of IDA (PMID:31267705) UniProt PMID:31267705 NCBI chr 9:34,086,387...34,126,698
Ensembl chr 9:34,086,387...34,127,399 		JBrowse link
G DDIT3 DNA damage inducible transcript 3 involved_in ISS UniProt GO_REF:0000024 NCBI chr12:57,516,588...57,520,517
Ensembl chr12:57,516,588...57,521,737 		JBrowse link
G DEPP1 DEPP autophagy regulator 1 involved_in IDA
IBA		 (PMID:28545464) UniProt
GO_Central		 PMID:28545464 GO_REF:0000033 NCBI chr10:44,976,128...44,978,809
Ensembl chr10:44,970,981...44,978,809 		JBrowse link
G DRAM1 DNA damage regulated autophagy modulator 1 involved_in IDA
IBA
IEA		 (PMID:19895784) UniProt
GO_Central
TreeGrafter		 PMID:19895784 GO_REF:0000033 GO_REF:0000118 NCBI chr12:101,877,580...101,923,612
Ensembl chr12:101,877,580...102,012,130 		JBrowse link
G DRAM2 DNA damage regulated autophagy modulator 2 involved_in IDA
IBA		 (PMID:19895784) UniProt
GO_Central		 PMID:19895784 GO_REF:0000033 NCBI chr 1:111,117,163...111,140,093
Ensembl chr 1:111,117,163...111,140,203 		JBrowse link
G EP300 E1A binding protein p300 involved_in TAS (PMID:24852146) ParkinsonsUK-UCL PMID:24852146 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,592...41,180,077 		JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18443001) Ensembl
MGI		 PMID:18443001 GO_REF:0000107 NCBI chr16:13,920,154...13,952,348
Ensembl chr16:13,920,138...13,952,348 		JBrowse link
G FBXL2 F-box and leucine rich repeat protein 2 involved_in IMP (PMID:23604317) UniProt PMID:23604317 NCBI chr 3:33,277,025...33,422,698
Ensembl chr 3:33,277,025...33,403,662 		JBrowse link
G GPR137 G protein-coupled receptor 137 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr11:64,270,531...64,289,500
Ensembl chr11:64,270,062...64,289,494 		JBrowse link
G GPR137B G protein-coupled receptor 137B involved_in IMP
IEA
IBA		 (PMID:31036939) UniProt
TreeGrafter
GO_Central		 PMID:31036939 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:236,142,539...236,208,907
Ensembl chr 1:236,142,505...236,221,865 		JBrowse link
G HDAC6 histone deacetylase 6 involved_in TAS (PMID:25548531) ParkinsonsUK-UCL PMID:25548531 NCBI chr  X:48,801,398...48,824,982
Ensembl chr  X:48,801,377...48,824,982 		JBrowse link
G HSPB1 heat shock protein family B (small) member 1 involved_in NAS (PMID:25962073) ParkinsonsUK-UCL PMID:25962073 NCBI chr 7:76,302,673...76,304,292
Ensembl chr 7:76,302,673...76,304,295 		JBrowse link
G IFI16 interferon gamma inducible protein 16 involved_in IEP (PMID:21573174) UniProt PMID:21573174 NCBI chr 1:158,999,976...159,055,151
Ensembl chr 1:158,999,968...159,055,155 		JBrowse link
G ITPR1 inositol 1,4,5-trisphosphate receptor type 1 involved_in TAS (PMID:22770472) ParkinsonsUK-UCL PMID:22770472 NCBI chr 3:4,493,348...4,847,506
Ensembl chr 3:4,493,345...4,847,506 		JBrowse link
G KAT8 lysine acetyltransferase 8 acts_upstream_of_or_within IDA (PMID:23863932) MGI PMID:23863932 NCBI chr16:31,117,664...31,131,393
Ensembl chr16:31,114,489...31,131,393 		JBrowse link
G KEAP1 kelch like ECH associated protein 1 involved_in IDA
IEA		 (PMID:20452972) UniProt
Ensembl		 PMID:20452972 GO_REF:0000107 NCBI chr19:10,486,125...10,503,356
Ensembl chr19:10,486,125...10,503,558 		JBrowse link
G LAMP3 lysosomal associated membrane protein 3 involved_in IMP (PMID:25681212) ParkinsonsUK-UCL PMID:25681212 NCBI chr 3:183,122,215...183,163,813
Ensembl chr 3:183,122,215...183,163,839 		JBrowse link
G LMX1B LIM homeobox transcription factor 1 beta involved_in ISO (MGI:5645828|PMID:25915474) ParkinsonsUK-UCL PMID:25915474 MGI:5645828 NCBI chr 9:126,613,928...126,701,032
Ensembl chr 9:126,613,928...126,701,032 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IMP (PMID:24211199) ParkinsonsUK-UCL PMID:24211199 NCBI chr12:40,224,997...40,369,285
Ensembl chr12:40,196,744...40,369,285 		JBrowse link
G MAPK15 mitogen-activated protein kinase 15 involved_in IDA (PMID:22948227) UniProt PMID:22948227 NCBI chr 8:143,716,349...143,722,458
Ensembl chr 8:143,716,340...143,722,458 		JBrowse link
G MAPT microtubule associated protein tau acts_upstream_of_or_within IGI (PMID:19074461) MGI PMID:19074461 NCBI chr17:45,894,554...46,028,334
Ensembl chr17:45,894,527...46,028,334 		JBrowse link
G MFSD8 major facilitator superfamily domain containing 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26681805) Ensembl
MGI		 PMID:26681805 GO_REF:0000107 NCBI chr 4:127,917,732...127,965,963
Ensembl chr 4:127,917,799...127,966,034 		JBrowse link
G MTCL1 microtubule crosslinking factor 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr18:8,705,556...8,832,778
Ensembl chr18:8,705,556...8,832,778 		JBrowse link
G MTCL2 microtubule crosslinking factor 2 involved_in ISS
IEA		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000024 NCBI chr20:36,777,447...36,863,538
Ensembl chr20:36,777,447...36,863,538 		JBrowse link
G MTCL3 MTCL family member 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:127,472,974...127,519,335
Ensembl chr 6:127,472,806...127,519,335 		JBrowse link
G MTMR3 myotubularin related protein 3 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr22:29,883,174...30,030,868
Ensembl chr22:29,883,169...30,030,868 		JBrowse link
G MTMR4 myotubularin related protein 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:58,489,537...58,519,047
Ensembl chr17:58,489,529...58,517,905 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:11,106,535...11,262,551
Ensembl chr 1:11,106,535...11,262,556 		JBrowse link
G NLRP6 NLR family pyrin domain containing 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24581500) Ensembl
MGI		 PMID:24581500 GO_REF:0000107 NCBI chr11:278,407...285,388
Ensembl chr11:278,407...285,388 		JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in ISS UniProt GO_REF:0000024 NCBI chr16:28,532,708...28,538,974
Ensembl chr16:28,532,708...28,539,008 		JBrowse link
G OSBPL7 oxysterol binding protein like 7 involved_in NAS (PMID:21669198) ParkinsonsUK-UCL PMID:21669198 NCBI chr17:47,807,372...47,821,794
Ensembl chr17:47,807,372...47,821,803 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in IDA (PMID:16799551) ComplexPortal PMID:16799551 NCBI chr18:41,955,234...42,087,830
Ensembl chr18:41,955,234...42,087,830 		JBrowse link
G PIK3R2 phosphoinositide-3-kinase regulatory subunit 2 involved_in IMP (PMID:23604317) UniProt PMID:23604317 NCBI chr19:18,153,163...18,170,532
Ensembl chr19:18,153,163...18,170,532 		JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IDA (PMID:16799551) ComplexPortal PMID:16799551 NCBI chr 3:130,678,934...130,746,829
Ensembl chr 3:130,678,934...130,746,829 		JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISS
IMP
IEA		 (PMID:25578879) UniProt
ParkinsonsUK-UCL
Ensembl		 PMID:25578879 GO_REF:0000024 GO_REF:0000107 NCBI chr10:22,534,854...22,714,578
Ensembl chr10:22,534,854...22,714,578 		JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISS
IMP
IEA		 (PMID:25578879) UniProt
ParkinsonsUK-UCL
Ensembl		 PMID:25578879 GO_REF:0000024 GO_REF:0000107 NCBI chr17:38,765,691...38,799,556
Ensembl chr17:38,765,691...38,800,126 		JBrowse link
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr12:57,591,192...57,603,418
Ensembl chr12:57,591,174...57,603,418 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IDA (PMID:20889974) UniProt PMID:20889974 NCBI chr 6:161,347,417...162,727,766
Ensembl chr 6:161,347,417...162,727,775 		JBrowse link
G PSAP prosaposin involved_in TAS (PMID:22949512) ParkinsonsUK-UCL PMID:22949512 NCBI chr10:71,816,298...71,851,251
Ensembl chr10:71,816,298...71,851,251 		JBrowse link
G PYCARD PYD and CARD domain containing involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24581500) Ensembl
MGI		 PMID:24581500 GO_REF:0000107 NCBI chr16:31,201,486...31,202,760
Ensembl chr16:31,201,486...31,203,450 		JBrowse link
G RAB39B RAB39B, member RAS oncogene family involved_in IMP (PMID:27103069) UniProt PMID:27103069 NCBI chr  X:155,258,235...155,264,491
Ensembl chr  X:155,258,235...155,264,491 		JBrowse link
G RAB8A RAB8A, member RAS oncogene family involved_in IMP (PMID:27103069) UniProt PMID:27103069 NCBI chr19:16,111,889...16,134,234
Ensembl chr19:16,111,889...16,134,234 		JBrowse link
G RMC1 regulator of MON1-CCZ1 involved_in IEA
IBA
IMP		 (PMID:29038162) InterPro
GO_Central
TreeGrafter
UniProt		 PMID:29038162 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr18:23,503,470...23,531,822
Ensembl chr18:23,503,496...23,531,822 		JBrowse link
G RPTOR regulatory associated protein of MTOR complex 1 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr17:80,544,838...80,966,368
Ensembl chr17:80,544,819...80,966,371 		JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IEA
NAS
IMP		 (PMID:27617292)
(PMID:27103069)		 Ensembl
ComplexPortal
UniProt		 PMID:27103069 PMID:27617292 GO_REF:0000107 NCBI chr17:18,315,293...18,328,056
Ensembl chr17:18,315,293...18,328,056 		JBrowse link
G TPCN2 two pore segment channel 2 involved_in IGI (PMID:22012985) ParkinsonsUK-UCL PMID:22012985 NCBI chr11:69,048,932...69,090,597
Ensembl chr11:69,048,932...69,136,316 		JBrowse link
G TRIB3 tribbles pseudokinase 3 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr20:380,760...397,559
Ensembl chr20:362,835...397,559 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:131,894,622...131,923,150
Ensembl chr12:131,894,622...131,923,150 		JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:19,770,830...19,867,936
Ensembl chr17:19,770,829...19,867,936 		JBrowse link
G ULK3 unc-51 like kinase 3 involved_in IEA
IBA		 InterPro
TreeGrafter
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr15:74,836,118...74,843,156
Ensembl chr15:74,836,118...74,843,346 		JBrowse link
G USP10 ubiquitin specific peptidase 10 involved_in IDA
IBA
IEA		 (PMID:21962518) UniProt
GO_Central
TreeGrafter		 PMID:21962518 GO_REF:0000033 GO_REF:0000118 NCBI chr16:84,700,000...84,779,922
Ensembl chr16:84,699,986...84,779,922 		JBrowse link
G USP13 ubiquitin specific peptidase 13 involved_in IDA (PMID:21962518) UniProt PMID:21962518 NCBI chr 3:179,653,040...179,789,401
Ensembl chr 3:179,653,032...179,804,366 		JBrowse link
G USP33 ubiquitin specific peptidase 33 involved_in IMP (PMID:24056301) UniProt PMID:24056301 NCBI chr 1:77,695,987...77,759,852
Ensembl chr 1:77,695,987...77,759,852 		JBrowse link
G UVRAG UV radiation resistance associated involved_in IDA (PMID:16799551) ComplexPortal PMID:16799551 NCBI chr11:75,815,210...76,144,232
Ensembl chr11:75,815,210...76,144,232 		JBrowse link
G VPS29 VPS29 retromer complex component NOT|involved_in IMP (PMID:24603492) ParkinsonsUK-UCL PMID:24603492 NCBI chr12:110,491,083...110,502,111
Ensembl chr12:110,491,083...110,502,111 		JBrowse link
G WAC WW domain containing adaptor with coiled-coil involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:28,532,779...28,623,112
Ensembl chr10:28,532,493...28,623,112 		JBrowse link
G WDR24 WD repeat domain 24 involved_in IMP (PMID:27166823) UniProt PMID:27166823 NCBI chr16:684,622...690,398
Ensembl chr16:684,622...690,444 		JBrowse link
G WDR41 WD repeat domain 41 involved_in IMP
NAS
IEA		 (PMID:27103069)
(PMID:27617292)		 UniProt
ComplexPortal
InterPro		 PMID:27103069 PMID:27617292 GO_REF:0000002 NCBI chr 5:77,430,933...77,620,577
Ensembl chr 5:77,425,970...77,620,611 		JBrowse link
G XBP1 X-box binding protein 1 involved_in ISO (MGI:5573106|PMID:24753614) UniProt PMID:24753614 MGI:5573106 NCBI chr22:28,794,560...28,800,569
Ensembl chr22:28,794,555...28,800,597 		JBrowse link
G XPA XPA, DNA damage recognition and repair factor acts_upstream_of_or_within ISO (PMID:18443001) MGI PMID:18443001 NCBI chr 9:97,654,398...97,697,340
Ensembl chr 9:97,674,909...97,697,340 		JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18443001) Ensembl
MGI		 PMID:18443001 GO_REF:0000107 NCBI chr 1:40,258,236...40,294,180
Ensembl chr 1:40,258,041...40,294,180 		JBrowse link
negative regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC6 histone deacetylase 6 involved_in IDA (PMID:31857589) UniProt PMID:31857589 NCBI chr  X:48,801,398...48,824,982
Ensembl chr  X:48,801,377...48,824,982 		JBrowse link
G LYPLA1 lysophospholipase 1 involved_in IDA (PMID:37802024) UniProt PMID:37802024 NCBI chr 8:54,046,367...54,101,947
Ensembl chr 8:54,046,367...54,102,017 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BECN1 beclin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27994061) Ensembl
MGI		 PMID:27994061 GO_REF:0000107 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23918802) Ensembl
MGI		 PMID:23918802 GO_REF:0000107 NCBI chr 6:31,879,759...31,897,698
Ensembl chr 6:31,879,759...31,897,698 		JBrowse link
G FEZ1 fasciculation and elongation protein zeta 1 involved_in IMP (PMID:25495476) GO_Central PMID:25495476 NCBI chr11:125,442,881...125,496,265
Ensembl chr11:125,442,881...125,592,568 		JBrowse link
G FEZ2 fasciculation and elongation protein zeta 2 involved_in IMP (PMID:25495476) GO_Central PMID:25495476 NCBI chr 2:36,552,258...36,598,168
Ensembl chr 2:36,531,805...36,646,087 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IMP (PMID:23916833) ParkinsonsUK-UCL PMID:23916833 NCBI chr12:40,224,997...40,369,285
Ensembl chr12:40,196,744...40,369,285 		JBrowse link
G MTM1 myotubularin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:23695157) Ensembl
MGI
GO_Central
TreeGrafter		 PMID:23695157 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:150,562,653...150,673,143
Ensembl chr  X:150,568,417...150,673,143 		JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in IMP (PMID:20181828) UniProt PMID:20181828 NCBI chr16:28,532,708...28,538,974
Ensembl chr16:28,532,708...28,539,008 		JBrowse link
G PHF23 PHD finger protein 23 involved_in IMP
IBA		 (PMID:25484098) GO_Central PMID:25484098 GO_REF:0000033 NCBI chr17:7,235,038...7,240,828
Ensembl chr17:7,235,029...7,239,722 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IMP (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511 		JBrowse link
G SCFD1 sec1 family domain containing 1 involved_in IMP (PMID:21242315) UniProt PMID:21242315 NCBI chr14:30,622,254...30,735,850
Ensembl chr14:30,622,291...30,737,694 		JBrowse link
G SEC22B SEC22 homolog B, vesicle trafficking protein involved_in IMP (PMID:21242315) UniProt PMID:21242315 NCBI chr 1:120,150,898...120,176,520
Ensembl chr 1:120,150,898...120,176,520 		JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IMP (PMID:28195531) HGNC PMID:28195531 NCBI chr17:18,315,293...18,328,056
Ensembl chr17:18,315,293...18,328,056 		JBrowse link
G TMEM39A transmembrane protein 39A involved_in IMP
IBA		 (PMID:31806350) UniProt
GO_Central		 PMID:31806350 GO_REF:0000033 NCBI chr 3:119,428,949...119,463,615
Ensembl chr 3:119,428,949...119,468,830 		JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLEC16A C-type lectin domain containing 16A involved_in IMP (PMID:28223137) UniProt PMID:28223137 NCBI chr16:10,944,564...11,182,186
Ensembl chr16:10,944,539...11,182,186 		JBrowse link
G PHF23 PHD finger protein 23 involved_in IMP
IBA		 (PMID:25484098) GO_Central PMID:25484098 GO_REF:0000033 NCBI chr17:7,235,038...7,240,828
Ensembl chr17:7,235,029...7,239,722 		JBrowse link
G RUBCN rubicon autophagy regulator involved_in IMP
IEA
IBA
TAS		 (PMID:21062745)
(PMID:21118109)		 UniProt
TreeGrafter
GO_Central
ParkinsonsUK-UCL		 PMID:21062745 PMID:21118109 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:197,668,867...197,749,820
Ensembl chr 3:197,668,867...197,749,727 		JBrowse link
G TMEM39A transmembrane protein 39A involved_in IMP
IBA		 (PMID:31806350) UniProt
GO_Central		 PMID:31806350 GO_REF:0000033 NCBI chr 3:119,428,949...119,463,615
Ensembl chr 3:119,428,949...119,468,830 		JBrowse link
G UBQLN4 ubiquilin 4 involved_in IMP (PMID:23459205) UniProt PMID:23459205 NCBI chr 1:156,031,247...156,053,798
Ensembl chr 1:156,035,299...156,053,798 		JBrowse link
negative regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADRA1A adrenoceptor alpha 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27994061) Ensembl
MGI		 PMID:27994061 GO_REF:0000107 NCBI chr 8:26,748,150...26,867,379
Ensembl chr 8:26,748,150...26,867,278 		JBrowse link
G AKT1 AKT serine/threonine kinase 1 involved_in IMP (PMID:18387192) BHF-UCL PMID:18387192 NCBI chr14:104,769,349...104,795,748
Ensembl chr14:104,769,349...104,795,751 		JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in IDA
TAS
IEA		 (PMID:21358617)
(PMID:18309324)		 UniProt
Ensembl		 PMID:18309324 PMID:21358617 GO_REF:0000107 NCBI chr18:63,123,346...63,320,090
Ensembl chr18:63,123,346...63,320,128 		JBrowse link
G BCL2L1 BCL2 like 1 involved_in TAS (PMID:18309324) UniProt PMID:18309324 NCBI chr20:31,664,452...31,723,963
Ensembl chr20:31,664,452...31,723,989 		JBrowse link
G BECN1 beclin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27994061) Ensembl
MGI		 PMID:27994061 GO_REF:0000107 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G BMF Bcl2 modifying factor involved_in IDA
IBA		 (PMID:23629966) CAFA
GO_Central		 PMID:23629966 GO_REF:0000033 NCBI chr15:40,087,890...40,108,879
Ensembl chr15:40,087,890...40,108,892 		JBrowse link
G CPTP ceramide-1-phosphate transfer protein involved_in IMP (PMID:29164996) UniProt PMID:29164996 NCBI chr 1:1,324,802...1,328,896
Ensembl chr 1:1,324,756...1,328,896 		JBrowse link
G DAP death associated protein involved_in IMP
IEA
IBA		 (PMID:20537536) UniProt
TreeGrafter
GO_Central		 PMID:20537536 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:10,679,230...10,761,234
Ensembl chr 5:10,679,230...10,761,234 		JBrowse link
G DAPL1 death associated protein like 1 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:158,795,317...158,815,990
Ensembl chr 2:158,795,317...158,862,781 		JBrowse link
G EIF4E eukaryotic translation initiation factor 4E NOT|involved_in IMP (PMID:18426977) ParkinsonsUK-UCL PMID:18426977 NCBI chr 4:98,879,276...98,929,133
Ensembl chr 4:98,879,276...98,929,133 		JBrowse link
G EIF4G1 eukaryotic translation initiation factor 4 gamma 1 involved_in IMP (PMID:18426977) ParkinsonsUK-UCL PMID:18426977 NCBI chr 3:184,314,606...184,335,358
Ensembl chr 3:184,314,495...184,335,358 		JBrowse link
G EIF4G2 eukaryotic translation initiation factor 4 gamma 2 involved_in IMP (PMID:18426977) ParkinsonsUK-UCL PMID:18426977 NCBI chr11:10,797,046...10,808,926
Ensembl chr11:10,797,050...10,808,940 		JBrowse link
G EIF4G3 eukaryotic translation initiation factor 4 gamma 3 NOT|involved_in IMP (PMID:18426977) ParkinsonsUK-UCL PMID:18426977 NCBI chr 1:20,806,292...21,176,897
Ensembl chr 1:20,806,292...21,177,285 		JBrowse link
G EP300 E1A binding protein p300 involved_in IDA (PMID:32561715) UniProt PMID:32561715 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,592...41,180,077 		JBrowse link
G ERFE erythroferrone involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:238,158,970...238,168,890
Ensembl chr 2:238,158,970...238,168,900 		JBrowse link
G FOXK1 forkhead box K1 involved_in IDA (PMID:25402684) UniProt PMID:25402684 NCBI chr 7:4,682,295...4,771,442
Ensembl chr 7:4,682,295...4,771,442 		JBrowse link
G FOXK2 forkhead box K2 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:82,519,732...82,604,602
Ensembl chr17:82,519,713...82,644,662 		JBrowse link
G GATA4 GATA binding protein 4 involved_in ISO
IEA		 RGD
Ensembl		 PMID:19901028 GO_REF:0000107 RGD:5131537 NCBI chr 8:11,676,935...11,760,002
Ensembl chr 8:11,676,959...11,760,002 		JBrowse link
G GOLGA2 golgin A2 involved_in IMP (PMID:22735382) ParkinsonsUK-UCL PMID:22735382 NCBI chr 9:128,255,829...128,276,007
Ensembl chr 9:128,255,829...128,276,026 		JBrowse link
G HERC1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20041218) Ensembl
MGI		 PMID:20041218 GO_REF:0000107 NCBI chr15:63,608,618...63,833,948
Ensembl chr15:63,608,618...63,833,948 		JBrowse link
G HGF hepatocyte growth factor involved_in NAS (PMID:24743740) ParkinsonsUK-UCL PMID:24743740 NCBI chr 7:81,699,010...81,770,047
Ensembl chr 7:81,699,010...81,770,438 		JBrowse link
G IL10 interleukin 10 involved_in IDA (PMID:26962683) UniProt PMID:26962683 NCBI chr 1:206,767,602...206,772,494
Ensembl chr 1:206,767,602...206,774,541 		JBrowse link
G IL10RA interleukin 10 receptor subunit alpha involved_in IDA (PMID:26962683) UniProt PMID:26962683 NCBI chr11:117,986,394...118,003,037
Ensembl chr11:117,986,370...118,003,037 		JBrowse link
G IL3 interleukin 3 acts_upstream_of_or_within ISO (PMID:15680329) MGI PMID:15680329 NCBI chr 5:132,060,655...132,063,204
Ensembl chr 5:132,060,655...132,063,204 		JBrowse link
G KDM4A lysine demethylase 4A involved_in IMP (PMID:25660547) ParkinsonsUK-UCL PMID:25660547 NCBI chr 1:43,650,149...43,705,518
Ensembl chr 1:43,650,149...43,705,518 		JBrowse link
G KIF25 kinesin family member 25 involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr 6:167,997,671...168,045,091
Ensembl chr 6:167,996,241...168,045,091 		JBrowse link
G KLHL22 kelch like family member 22 involved_in IMP (PMID:29769719) UniProt PMID:29769719 NCBI chr22:20,441,519...20,495,795
Ensembl chr22:20,441,519...20,495,844 		JBrowse link
G LEP leptin involved_in IEA
IDA		 (PMID:25060689) Ensembl
UniProt		 PMID:25060689 GO_REF:0000107 NCBI chr 7:128,241,278...128,257,629
Ensembl chr 7:128,241,278...128,257,629 		JBrowse link
G LEPR leptin receptor involved_in IDA (PMID:25060689) UniProt PMID:25060689 NCBI chr 1:65,420,652...65,641,559
Ensembl chr 1:65,420,652...65,641,559 		JBrowse link
G MAGEA3 MAGE family member A3 involved_in IDA (PMID:31267705) UniProt PMID:31267705 NCBI chr  X:152,698,794...152,702,347
Ensembl chr  X:152,698,767...152,702,347 		JBrowse link
G MAGEA6 MAGE family member A6 involved_in IDA (PMID:31267705) UniProt PMID:31267705 NCBI chr  X:152,766,136...152,769,689
Ensembl chr  X:152,766,136...152,769,716 		JBrowse link
G MCL1 MCL1 apoptosis regulator, BCL2 family member involved_in IMP (PMID:24113155) UniProt PMID:24113155 NCBI chr 1:150,574,558...150,579,610
Ensembl chr 1:150,560,895...150,579,738 		JBrowse link
G MET MET proto-oncogene, receptor tyrosine kinase involved_in NAS (PMID:24743740) ParkinsonsUK-UCL PMID:24743740 NCBI chr 7:116,672,196...116,798,377
Ensembl chr 7:116,672,196...116,798,377 		JBrowse link
G MIR199A1 microRNA 199a-1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr19:10,817,426...10,817,496
Ensembl chr19:10,817,426...10,817,496 		JBrowse link
G MIR199A2 microRNA 199a-2 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 1:172,144,535...172,144,644
Ensembl chr 1:172,144,535...172,144,644 		JBrowse link
G MIR223 microRNA 223 ISO RGD PMID:29608885 RGD:21408565 NCBI chr  X:66,018,870...66,018,979
Ensembl chr  X:66,018,870...66,018,979 		JBrowse link
G MIRLET7B microRNA let-7b involved_in IDA (PMID:26296645) BHF-UCL PMID:26296645 NCBI chr22:46,113,686...46,113,768
Ensembl chr22:46,113,686...46,113,768 		JBrowse link
G MLST8 MTOR associated protein, LST8 homolog involved_in NAS (PMID:28283069) ComplexPortal PMID:28283069 NCBI chr16:2,205,454...2,209,453
Ensembl chr16:2,204,248...2,209,453 		JBrowse link
G MTMR8 myotubularin related protein 8 involved_in IPI (PMID:22647598) UniProt PMID:22647598 NCBI chr  X:64,268,081...64,395,452
Ensembl chr  X:64,268,081...64,395,452 		JBrowse link
G MTMR9 myotubularin related protein 9 involved_in IPI
IEA
IBA		 (PMID:22647598) UniProt
TreeGrafter
GO_Central		 PMID:22647598 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:11,284,816...11,339,526
Ensembl chr 8:11,284,816...11,328,146 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in ISO
IEA
IDA
NAS
IMP
ISS		 (PMID:22576015), (PMID:30704899), (PMID:32561715)
(PMID:28283069)
(PMID:22424946)		 RGD
UniProt
ComplexPortal
CAFA
Ensembl		 PMID:22424946 PMID:22576015 PMID:24725502 PMID:28283069 PMID:30704899 More... GO_REF:0000024 GO_REF:0000107 GO_REF:0000117 RGD:10040964 NCBI chr 1:11,106,535...11,262,551
Ensembl chr 1:11,106,535...11,262,556 		JBrowse link
G NAMPT nicotinamide phosphoribosyltransferase ISO RGD PMID:26601421 RGD:13781888 NCBI chr 7:106,248,298...106,285,888
Ensembl chr 7:106,248,298...106,285,966 		JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in ISS
IEA
IMP		 (PMID:20181828) UniProt
Ensembl		 PMID:20181828 GO_REF:0000024 GO_REF:0000107 NCBI chr16:28,532,708...28,538,974
Ensembl chr16:28,532,708...28,539,008 		JBrowse link
G PTK2 protein tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:27994061) MGI PMID:27994061 NCBI chr 8:140,657,900...141,002,079
Ensembl chr 8:140,657,900...141,002,216 		JBrowse link
G PTPN22 protein tyrosine phosphatase non-receptor type 22 involved_in IMP (PMID:23991106) UniProt PMID:23991106 NCBI chr 1:113,813,811...113,871,759
Ensembl chr 1:113,813,811...113,871,753 		JBrowse link
G RASIP1 Ras interacting protein 1 involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr19:48,720,585...48,740,610
Ensembl chr19:48,720,585...48,740,610 		JBrowse link
G RNF5 ring finger protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23093945) Ensembl
MGI		 PMID:23093945 GO_REF:0000107 NCBI chr 6:32,178,405...32,180,793
Ensembl chr 6:32,178,405...32,180,793 		JBrowse link
G RPTOR regulatory associated protein of MTOR complex 1 involved_in NAS
IDA		 (PMID:28283069)
(PMID:32561715)		 ComplexPortal
UniProt		 PMID:28283069 PMID:32561715 NCBI chr17:80,544,838...80,966,368
Ensembl chr17:80,544,819...80,966,371 		JBrowse link
G RRAGA Ras related GTP binding A involved_in IMP
IBA
IEA		 (PMID:25936802) UniProt
GO_Central
Ensembl		 PMID:25936802 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:19,049,427...19,051,025
Ensembl chr 9:19,049,427...19,051,025 		JBrowse link
G RRAGB Ras related GTP binding B involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:55,717,749...55,758,774
Ensembl chr  X:55,717,749...55,758,774 		JBrowse link
G RRAGC Ras related GTP binding C involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:38,838,198...38,859,772
Ensembl chr 1:38,838,198...38,859,772 		JBrowse link
G RRAGD Ras related GTP binding D involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:89,364,616...89,412,273
Ensembl chr 6:89,364,616...89,412,273 		JBrowse link
G RUBCN rubicon autophagy regulator involved_in IMP (PMID:19270696) UniProt PMID:19270696 NCBI chr 3:197,668,867...197,749,820
Ensembl chr 3:197,668,867...197,749,727 		JBrowse link
G SIRT2 sirtuin 2 involved_in IMP (PMID:20543840) UniProt PMID:20543840 NCBI chr19:38,878,555...38,899,618
Ensembl chr19:38,878,555...38,899,862 		JBrowse link
G SLC7A5 solute carrier family 7 member 5 involved_in ISO
IEA		 RGD
Ensembl		 PMID:25049270 GO_REF:0000107 RGD:151361107 NCBI chr16:87,830,023...87,869,507
Ensembl chr16:87,830,023...87,869,507 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in IDA (PMID:26962683) UniProt PMID:26962683 NCBI chr17:42,313,324...42,388,442
Ensembl chr17:42,313,324...42,388,568 		JBrowse link
G STK38L serine/threonine kinase 38 like involved_in IDA (PMID:35670107) UniProt PMID:35670107 NCBI chr12:27,244,286...27,325,959
Ensembl chr12:27,243,968...27,325,959 		JBrowse link
G TAB2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 involved_in TAS (PMID:21976705) ParkinsonsUK-UCL PMID:21976705 NCBI chr 6:149,217,926...149,411,607
Ensembl chr 6:149,218,641...149,411,613 		JBrowse link
G TAB3 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 involved_in TAS (PMID:21976705) ParkinsonsUK-UCL PMID:21976705 NCBI chr  X:30,827,442...30,889,254
Ensembl chr  X:30,827,442...30,975,084 		JBrowse link
G TBC1D14 TBC1 domain family member 14 involved_in IMP (PMID:22613832) BHF-UCL PMID:22613832 NCBI chr 4:6,909,466...7,033,114
Ensembl chr 4:6,909,242...7,033,118 		JBrowse link
G TLK2 tousled like kinase 2 involved_in NAS (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr17:62,470,914...62,615,481
Ensembl chr17:62,458,658...62,615,481 		JBrowse link
G TREM2 triggering receptor expressed on myeloid cells 2 involved_in ISS
IEA		 ARUK-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:41,158,508...41,163,116
Ensembl chr 6:41,158,506...41,163,186 		JBrowse link
G TRIM27 tripartite motif containing 27 involved_in IDA (PMID:35670107) UniProt PMID:35670107 NCBI chr 6:28,903,002...28,923,985
Ensembl chr 6:28,903,002...28,923,988 		JBrowse link
G VHL von Hippel-Lindau tumor suppressor involved_in IDA (PMID:30902965) DisProt PMID:30902965 NCBI chr 3:10,141,778...10,153,667
Ensembl chr 3:10,141,778...10,153,667 		JBrowse link
G WASHC1 WASH complex subunit 1 involved_in ISS ParkinsonsUK-UCL GO_REF:0000024 NCBI chr 9:14,513...30,487
Ensembl chr 9:14,475...73,865 		JBrowse link
G WDR6 WD repeat domain 6 involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr 3:49,007,391...49,015,951
Ensembl chr 3:49,007,062...49,015,953 		JBrowse link
G WNK1 WNK lysine deficient protein kinase 1 involved_in IMP (PMID:27911840) UniProt PMID:27911840 NCBI chr12:752,579...911,452
Ensembl chr12:752,579...911,452 		JBrowse link
G ZKSCAN3 zinc finger with KRAB and SCAN domains 3 involved_in IMP (PMID:23434374) UniProt PMID:23434374 NCBI chr 6:28,349,878...28,369,172
Ensembl chr 6:28,349,947...28,369,172 		JBrowse link
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTSA cathepsin A involved_in IGI (PMID:12505983) ParkinsonsUK-UCL PMID:12505983 NCBI chr20:45,891,335...45,898,820
Ensembl chr20:45,890,144...45,898,949 		JBrowse link
G SNCA synuclein alpha involved_in IMP (PMID:20697033) ParkinsonsUK-UCL PMID:20697033 NCBI chr 4:89,724,099...89,838,304
Ensembl chr 4:89,700,345...89,838,315 		JBrowse link
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 involved_in TAS (PMID:25719862) ParkinsonsUK-UCL PMID:25719862 NCBI chr19:49,085,451...49,108,604
Ensembl chr19:49,085,419...49,108,605 		JBrowse link
negative regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in NAS (PMID:23778976) ParkinsonsUK-UCL PMID:23778976 NCBI chr14:104,769,349...104,795,748
Ensembl chr14:104,769,349...104,795,751 		JBrowse link
G HMOX1 heme oxygenase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20705711) Ensembl
MGI		 PMID:20705711 GO_REF:0000107 NCBI chr22:35,381,096...35,394,207
Ensembl chr22:35,380,361...35,394,214 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IMP (PMID:19640926) ParkinsonsUK-UCL PMID:19640926 NCBI chr12:40,224,997...40,369,285
Ensembl chr12:40,196,744...40,369,285 		JBrowse link
G LZTS1 leucine zipper tumor suppressor 1 involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr 8:20,246,165...20,303,963
Ensembl chr 8:20,246,165...20,303,963 		JBrowse link
G MTOR mechanistic target of rapamycin kinase acts_upstream_of_or_within
involved_in		 IDA
IBA
IEA		 (PMID:25327288) MGI
GO_Central
Ensembl		 PMID:25327288 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:11,106,535...11,262,551
Ensembl chr 1:11,106,535...11,262,556 		JBrowse link
G NPC1 NPC intracellular cholesterol transporter 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17468177) Ensembl
MGI		 PMID:17468177 GO_REF:0000107 NCBI chr18:23,506,184...23,586,506
Ensembl chr18:23,506,184...23,586,506 		JBrowse link
G NRBP2 nuclear receptor binding protein 2 involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr 8:143,829,776...143,840,973
Ensembl chr 8:143,833,583...143,840,973 		JBrowse link
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in NAS (PMID:23778976) ParkinsonsUK-UCL PMID:23778976 NCBI chr 3:179,148,126...179,240,093
Ensembl chr 3:179,148,114...179,240,093 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IMP (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511 		JBrowse link
G POLDIP2 DNA polymerase delta interacting protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24797518) Ensembl
MGI		 PMID:24797518 GO_REF:0000107 NCBI chr17:28,346,633...28,357,527
Ensembl chr17:28,346,633...28,357,527 		JBrowse link
G QSOX1 quiescin sulfhydryl oxidase 1 involved_in IMP (PMID:24475161) CACAO PMID:24475161 NCBI chr 1:180,154,869...180,204,030
Ensembl chr 1:180,154,869...180,204,030 		JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IMP (PMID:28195531) HGNC PMID:28195531 NCBI chr17:18,315,293...18,328,056
Ensembl chr17:18,315,293...18,328,056 		JBrowse link
G TSC1 TSC complex subunit 1 involved_in ISS ParkinsonsUK-UCL GO_REF:0000024 NCBI chr 9:132,891,349...132,945,378
Ensembl chr 9:132,891,348...132,946,874 		JBrowse link
G TSC2 TSC complex subunit 2 ISO RGD PMID:24599401 RGD:11568679 NCBI chr16:2,047,985...2,089,491
Ensembl chr16:2,047,967...2,089,491 		JBrowse link
G USP36 ubiquitin specific peptidase 36 involved_in IMP (PMID:22622177) UniProt PMID:22622177 NCBI chr17:78,787,381...78,841,439
Ensembl chr17:78,787,381...78,841,441 		JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLEC16A C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chr16:10,944,564...11,182,186
Ensembl chr16:10,944,539...11,182,186 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IMP (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511 		JBrowse link
G RNF41 ring finger protein 41 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24949970) Ensembl
MGI		 PMID:24949970 GO_REF:0000107 NCBI chr12:56,202,179...56,221,969
Ensembl chr12:56,202,179...56,221,933 		JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chr12:4,321,213...4,360,028
Ensembl chr12:4,307,763...4,360,028 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chr17:7,668,421...7,687,490
Ensembl chr17:7,661,779...7,687,538 		JBrowse link
G TSC2 TSC complex subunit 2 involved_in NAS (PMID:26735435) ParkinsonsUK-UCL PMID:26735435 NCBI chr16:2,047,985...2,089,491
Ensembl chr16:2,047,967...2,089,491 		JBrowse link
G TSPO translocator protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:43,151,559...43,163,242
Ensembl chr22:43,151,547...43,163,242 		JBrowse link
G USP30 ubiquitin specific peptidase 30 involved_in ISO
IEA		 RGD
Ensembl		 PMID:24896179 GO_REF:0000107 RGD:13208875 NCBI chr12:109,023,089...109,088,023
Ensembl chr12:109,023,089...109,088,023 		JBrowse link
negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS13C vacuolar protein sorting 13 homolog C involved_in IMP (PMID:26942284) ParkinsonsUK-UCL PMID:26942284 NCBI chr15:61,852,389...62,060,447
Ensembl chr15:61,852,389...62,060,473 		JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG3 BAG cochaperone 3 involved_in IMP (PMID:18006506) ARUK-UCL PMID:18006506 NCBI chr10:119,651,380...119,677,819
Ensembl chr10:119,651,380...119,677,819 		JBrowse link
G CSNK2A1 casein kinase 2 alpha 1 involved_in IDA (PMID:22017874) UniProt PMID:22017874 NCBI chr20:472,498...543,790
Ensembl chr20:472,498...543,835 		JBrowse link
G HSPB8 heat shock protein family B (small) member 8 involved_in IMP (PMID:18006506) ARUK-UCL PMID:18006506 NCBI chr12:119,178,931...119,194,746
Ensembl chr12:119,171,555...119,224,855 		JBrowse link
G HTT huntingtin involved_in IMP (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chr 4:3,074,681...3,243,960
Ensembl chr 4:3,041,363...3,243,957 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IDA (PMID:31857589) UniProt PMID:31857589 NCBI chr11:65,712,018...65,719,604
Ensembl chr11:65,711,996...65,719,604 		JBrowse link
G ZDHHC19 zinc finger DHHC-type palmitoyltransferase 19 involved_in IDA (PMID:37802024) UniProt PMID:37802024 NCBI chr 3:196,197,452...196,211,400
Ensembl chr 3:196,197,452...196,211,437 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG2A autophagy related 2A involved_in IDA (PMID:30952800), (PMID:31271352) UniProt PMID:30952800 PMID:31271352 NCBI chr11:64,894,546...64,917,209
Ensembl chr11:64,894,546...64,917,209 		JBrowse link
G BECN1 beclin 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:25561470 GO_REF:0000107 RGD:11561937 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IMP (PMID:21072319) BHF-UCL PMID:21072319 NCBI chr 1:109,114,115...109,206,781
Ensembl chr 1:109,113,679...109,206,781 		JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in IMP (PMID:25484098) GO_Central PMID:25484098 NCBI chr 9:127,451,486...127,503,501
Ensembl chr 9:127,451,489...127,503,499 		JBrowse link
G MOAP1 modulator of apoptosis 1 involved_in IEA
IMP		 (PMID:33783314) Ensembl
UniProt		 PMID:33783314 GO_REF:0000107 NCBI chr14:93,182,199...93,184,897
Ensembl chr14:93,182,199...93,184,923 		JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr10:22,534,854...22,714,578
Ensembl chr10:22,534,854...22,714,578 		JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr17:38,765,691...38,799,556
Ensembl chr17:38,765,691...38,800,126 		JBrowse link
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr12:57,591,192...57,603,418
Ensembl chr12:57,591,174...57,603,418 		JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IMP (PMID:25495476) GO_Central PMID:25495476 NCBI chr 2:135,052,292...135,176,396
Ensembl chr 2:135,052,289...135,176,667 		JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IMP (PMID:25495476) GO_Central PMID:25495476 NCBI chr 1:220,148,293...220,272,453
Ensembl chr 1:220,148,293...220,272,529 		JBrowse link
G RALB RAS like proto-oncogene B involved_in IMP (PMID:24056301) UniProt PMID:24056301 NCBI chr 2:120,240,070...120,294,710
Ensembl chr 2:120,240,064...120,294,710 		JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in IMP (PMID:21068542) UniProt PMID:21068542 NCBI chr 1:86,704,576...86,748,184
Ensembl chr 1:86,704,570...86,748,184 		JBrowse link
G SNX18 sorting nexin 18 involved_in IMP (PMID:29437695) UniProt PMID:29437695 NCBI chr 5:54,517,759...54,648,005
Ensembl chr 5:54,517,759...54,546,586 		JBrowse link
G SNX30 sorting nexin family member 30 involved_in IMP (PMID:32513819) UniProt PMID:32513819 NCBI chr 9:112,749,723...112,885,769
Ensembl chr 9:112,750,760...112,881,671 		JBrowse link
G SNX4 sorting nexin 4 involved_in IMP
IBA		 (PMID:32513819), (PMID:33468622) UniProt
GO_Central		 PMID:32513819 PMID:33468622 GO_REF:0000033 NCBI chr 3:125,446,650...125,520,202
Ensembl chr 3:125,446,650...125,520,202 		JBrowse link
G SNX7 sorting nexin 7 involved_in IMP (PMID:32513819) UniProt PMID:32513819 NCBI chr 1:98,661,319...98,760,500
Ensembl chr 1:98,661,701...98,760,500 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IDA (PMID:37943659) UniProt PMID:37943659 NCBI chr 9:116,687,305...116,701,299
Ensembl chr 9:116,687,305...116,701,300 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:23448468 GO_REF:0000107 RGD:13208863 NCBI chr12:131,894,622...131,923,150
Ensembl chr12:131,894,622...131,923,150 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IDA (PMID:31271352) UniProt PMID:31271352 NCBI chr  X:49,074,442...49,101,178
Ensembl chr  X:49,074,433...49,101,170 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IDA (PMID:31271352) UniProt PMID:31271352 NCBI chr17:68,421,281...68,457,496
Ensembl chr17:68,420,948...68,457,513 		JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADRB2 adrenoceptor beta 2 involved_in IDA (PMID:23708524) GO_Central PMID:23708524 NCBI chr 5:148,826,611...148,828,623
Ensembl chr 5:148,826,611...148,828,623 		JBrowse link
G CALCOCO2 calcium binding and coiled-coil domain 2 involved_in IMP
IBA		 (PMID:25771791) GO_Central PMID:25771791 GO_REF:0000033 NCBI chr17:48,831,035...48,865,245
Ensembl chr17:48,831,018...48,866,522 		JBrowse link
G CLEC16A C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chr16:10,944,564...11,182,186
Ensembl chr16:10,944,539...11,182,186 		JBrowse link
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IMP
IBA		 (PMID:26468287) ParkinsonsUK-UCL
GO_Central		 PMID:26468287 GO_REF:0000033 NCBI chr 3:45,917,903...45,995,824
Ensembl chr 3:45,917,903...45,995,824 		JBrowse link
G IRGM immunity related GTPase M involved_in IMP (PMID:16888103) UniProt PMID:16888103 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,521...150,900,736 		JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IMP (PMID:28195531) HGNC PMID:28195531 NCBI chr17:18,315,293...18,328,056
Ensembl chr17:18,315,293...18,328,056 		JBrowse link
G TOM1 target of myb1 membrane trafficking protein involved_in IMP (PMID:23023224) UniProt PMID:23023224 NCBI chr22:35,299,275...35,347,973
Ensembl chr22:35,299,275...35,347,992 		JBrowse link
G UVRAG UV radiation resistance associated involved_in TAS (PMID:21118109) ParkinsonsUK-UCL PMID:21118109 NCBI chr11:75,815,210...76,144,232
Ensembl chr11:75,815,210...76,144,232 		JBrowse link
positive regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGER advanced glycosylation end-product specific receptor ISO RGD PMID:22293957 RGD:7245565 NCBI chr 6:32,180,969...32,184,253
Ensembl chr 6:32,180,968...32,184,322 		JBrowse link
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in ISO
IEA
IMP
IDA		 (PMID:32333458)
(PMID:21358617), (PMID:31123703)		 RGD
Ensembl
UniProt		 PMID:21358617 PMID:25117440 PMID:31123703 PMID:32333458 GO_REF:0000107 RGD:11552604 NCBI chr11:46,396,412...46,594,023
Ensembl chr11:46,396,414...46,594,125 		JBrowse link
G ATF6 activating transcription factor 6 acts_upstream_of_or_within IMP (PMID:28747345) MGI PMID:28747345 NCBI chr 1:161,766,320...161,964,070
Ensembl chr 1:161,766,298...161,977,574 		JBrowse link
G ATG101 autophagy related 101 involved_in IEA
ISO		 Ensembl
ComplexPortal		 GO_REF:0000107 GO_REF:0000114 NCBI chr12:52,065,300...52,077,495
Ensembl chr12:52,069,246...52,077,495 		JBrowse link
G ATG13 autophagy related 13 involved_in IEA
IDA
ISO		 (PMID:29487085) Ensembl
UniProt
ComplexPortal		 PMID:29487085 GO_REF:0000107 GO_REF:0000114 NCBI chr11:46,617,553...46,674,518
Ensembl chr11:46,617,527...46,674,818 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:233,251,673...233,295,669
Ensembl chr 2:233,210,051...233,295,674 		JBrowse link
G ATG7 autophagy related 7 ISO RGD PMID:24674959 PMID:25639566 RGD:11553823 RGD:11553824 NCBI chr 3:11,272,397...11,576,353
Ensembl chr 3:11,272,309...11,557,665 		JBrowse link
G BAD BCL2 associated agonist of cell death involved_in TAS (PMID:18309324) UniProt PMID:18309324 NCBI chr11:64,269,828...64,284,704
Ensembl chr11:64,269,830...64,284,704 		JBrowse link
G BECN1 beclin 1 involved_in IEA
ISO
IDA		 (PMID:21358617) Ensembl
RGD
UniProt		 PMID:21358617 PMID:21490676 PMID:24674959 GO_REF:0000107 RGD:11553823 RGD:6483070 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G BNIP3 BCL2 interacting protein 3 involved_in TAS (PMID:18309324) UniProt PMID:18309324 NCBI chr10:131,967,684...131,981,923
Ensembl chr10:131,967,684...131,981,967 		JBrowse link
G CCNY cyclin Y involved_in IDA (PMID:32098961) ComplexPortal PMID:32098961 NCBI chr10:35,247,025...35,572,667
Ensembl chr10:35,247,025...35,572,669 		JBrowse link
G CDK16 cyclin dependent kinase 16 involved_in IDA (PMID:32098961) ComplexPortal PMID:32098961 NCBI chr  X:47,218,303...47,229,997
Ensembl chr  X:47,217,860...47,229,997 		JBrowse link
G DAPK1 death associated protein kinase 1 involved_in IMP (PMID:22095288) ParkinsonsUK-UCL PMID:22095288 NCBI chr 9:87,497,228...87,708,634
Ensembl chr 9:87,497,228...87,708,634 		JBrowse link
G DCN decorin involved_in IDA (PMID:23798385) CACAO PMID:23798385 NCBI chr12:91,140,484...91,182,817
Ensembl chr12:91,140,484...91,183,217 		JBrowse link
G DEPDC5 DEP domain containing 5, GATOR1 subcomplex subunit involved_in IBA GO_Central GO_REF:0000033 NCBI chr22:31,753,968...31,908,033
Ensembl chr22:31,753,867...31,908,033 		JBrowse link
G DEPTOR DEP domain containing MTOR interacting protein involved_in IDA (PMID:22017875), (PMID:22017876), (PMID:22017877) UniProt PMID:22017875 PMID:22017876 PMID:22017877 NCBI chr 8:119,873,722...120,050,918
Ensembl chr 8:119,873,717...120,050,918 		JBrowse link
G DHRSX dehydrogenase/reductase X-linked involved_in IMP
IEA
IBA		 (PMID:25076851) UniProt
TreeGrafter
GO_Central		 PMID:25076851 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:2,219,506...2,500,976
NCBI chr  Y:2,219,506...2,500,976
Ensembl chr  X:2,219,506...2,502,805
Ensembl chr  Y:2,219,506...2,502,805 		JBrowse link
G ENDOG endonuclease G involved_in IMP
IEA		 (PMID:33473107) UniProt
Ensembl		 PMID:33473107 GO_REF:0000107 NCBI chr 9:128,818,500...128,822,676
Ensembl chr 9:128,818,500...128,822,676 		JBrowse link
G FLCN folliculin involved_in IMP
IDA		 (PMID:25126726) ParkinsonsUK-UCL
UniProt		 PMID:25126726 NCBI chr17:17,212,212...17,237,330
Ensembl chr17:17,212,212...17,237,188 		JBrowse link
G FOXO1 forkhead box O1 involved_in IMP (PMID:20543840) UniProt PMID:20543840 NCBI chr13:40,555,667...40,666,641
Ensembl chr13:40,555,667...40,666,641 		JBrowse link
G FOXO3 forkhead box O3 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:108,559,825...108,684,774
Ensembl chr 6:108,559,835...108,684,774 		JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr19:42,230,190...42,242,602
Ensembl chr19:42,226,225...42,242,625 		JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in ISS UniProt GO_REF:0000024 NCBI chr 3:119,821,321...120,094,447
Ensembl chr 3:119,821,321...120,094,994 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259 		JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO
IMP		 (PMID:20819940) RGD
UniProt		 PMID:20819940 PMID:23604926 RGD:10402086 NCBI chr13:30,456,704...30,617,597
Ensembl chr13:30,456,704...30,617,597 		JBrowse link
G IFNB1 interferon beta 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:21,077,104...21,077,942
Ensembl chr 9:21,077,104...21,077,942 		JBrowse link
G IFNG interferon gamma involved_in IDA (PMID:23629966), (PMID:26347139) UniProt PMID:23629966 PMID:26347139 NCBI chr12:68,154,768...68,159,740
Ensembl chr12:68,154,768...68,159,740 		JBrowse link
G IRGM immunity related GTPase M involved_in IMP
IDA		 (PMID:16888103), (PMID:25891078), (PMID:28389568)
(PMID:25891078), (PMID:29420192)		 UniProt PMID:16888103 PMID:25891078 PMID:28389568 PMID:29420192 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,521...150,900,736 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA
IDA		 (PMID:30704899) Ensembl
UniProt		 PMID:30704899 GO_REF:0000107 NCBI chr11:65,712,018...65,719,604
Ensembl chr11:65,711,996...65,719,604 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in ISS
IMP
IEA		 (PMID:22012985) BHF-UCL
UniProt
Ensembl		 PMID:22012985 GO_REF:0000024 GO_REF:0000107 NCBI chr12:40,224,997...40,369,285
Ensembl chr12:40,196,744...40,369,285 		JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 ISO RGD PMID:26581593 RGD:12879823 NCBI chr15:66,386,912...66,491,544
Ensembl chr15:66,386,837...66,491,656 		JBrowse link
G MAP3K7 mitogen-activated protein kinase kinase kinase 7 involved_in ISO
IEA		 RGD
Ensembl		 PMID:35078016 GO_REF:0000107 RGD:155804282 NCBI chr 6:90,513,579...90,587,072
Ensembl chr 6:90,513,573...90,587,086 		JBrowse link
G MEFV MEFV innate immunity regulator, pyrin involved_in IDA (PMID:26347139) UniProt PMID:26347139 NCBI chr16:3,242,027...3,256,633
Ensembl chr16:3,242,027...3,256,633 		JBrowse link
G MID2 midline 2 involved_in IMP (PMID:26347139) UniProt PMID:26347139 NCBI chr  X:107,825,735...107,931,637
Ensembl chr  X:107,825,755...107,931,637 		JBrowse link
G MIR222 microRNA 222 ISO RGD PMID:33792838 RGD:152025536 NCBI chr  X:45,747,015...45,747,124
Ensembl chr  X:45,747,015...45,747,124 		JBrowse link
G MTDH metadherin involved_in IDA (PMID:21127263) UniProt PMID:21127263 NCBI chr 8:97,644,184...97,730,260
Ensembl chr 8:97,644,184...97,730,260 		JBrowse link
G NOD1 nucleotide binding oligomerization domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:30,424,527...30,478,784
Ensembl chr 7:30,424,527...30,478,784 		JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:50,693,606...50,733,075
Ensembl chr16:50,693,588...50,733,077 		JBrowse link
G NPRL2 NPR2 like, GATOR1 complex subunit involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:50,347,330...50,350,775
Ensembl chr 3:50,347,330...50,350,826 		JBrowse link
G NPRL3 NPR3 like, GATOR1 complex subunit involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr16:85,386...138,673
Ensembl chr16:84,271...138,677 		JBrowse link
G OPTN optineurin involved_in IDA (PMID:21617041) GO_Central PMID:21617041 NCBI chr10:13,100,082...13,138,308
Ensembl chr10:13,099,449...13,138,308 		JBrowse link
G ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 involved_in
acts_upstream_of_or_within		 IEA
IDA
IMP		 (PMID:28747345) Ensembl
MGI		 PMID:28747345 GO_REF:0000107 NCBI chr17:39,921,041...39,927,601
Ensembl chr17:39,921,041...39,927,601 		JBrowse link
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha involved_in IMP (PMID:28910396) CACAO PMID:28910396 NCBI chr11:17,086,575...17,207,986
Ensembl chr11:17,077,730...17,207,986 		JBrowse link
G PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta involved_in TAS (PMID:21321382) UniProt PMID:21321382 NCBI chr 3:138,652,698...138,834,928
Ensembl chr 3:138,652,698...138,834,928 		JBrowse link
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:48,913,182...48,919,024
Ensembl chr  X:48,913,182...48,919,024 		JBrowse link
G PLEKHF1 pleckstrin homology and FYVE domain containing 1 involved_in IDA
IBA
IEA		 (PMID:22115783) BHF-UCL
GO_Central
TreeGrafter		 PMID:22115783 GO_REF:0000033 GO_REF:0000118 NCBI chr19:29,665,461...29,675,477
Ensembl chr19:29,665,459...29,675,477 		JBrowse link
G PLK2 polo like kinase 2 involved_in IDA (PMID:23983262) ParkinsonsUK-UCL PMID:23983262 NCBI chr 5:58,453,982...58,460,086
Ensembl chr 5:58,453,982...58,460,139 		JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IEA
IDA
ISS
IMP		 (PMID:22012985), (PMID:25891078)
(PMID:26103054)		 Ensembl
UniProt
ParkinsonsUK-UCL		 PMID:22012985 PMID:25891078 PMID:26103054 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:40,759,389...40,798,374
Ensembl chr 5:40,759,389...40,798,374 		JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:56,645,314...56,715,335
Ensembl chr 1:56,645,314...56,715,335 		JBrowse link
G PRKD1 protein kinase D1 involved_in IMP (PMID:22095288) ParkinsonsUK-UCL PMID:22095288 NCBI chr14:29,576,479...29,927,847
Ensembl chr14:29,576,479...30,191,898 		JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IEA
ISO		 Ensembl
ComplexPortal		 GO_REF:0000107 GO_REF:0000114 NCBI chr 8:52,622,458...52,714,435
Ensembl chr 8:52,622,458...52,745,843 		JBrowse link
G RFPL1 ret finger protein like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr22:29,387,909...29,442,455
Ensembl chr22:29,438,583...29,442,455 		JBrowse link
G RFPL2 ret finger protein like 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr22:32,190,438...32,205,073
Ensembl chr22:32,190,435...32,205,073 		JBrowse link
G RFPL3 ret finger protein like 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr22:32,354,885...32,361,161
Ensembl chr22:32,354,885...32,361,161 		JBrowse link
G RFPL4A ret finger protein like 4A involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:55,757,294...55,763,421
Ensembl chr19:55,759,097...55,763,421 		JBrowse link
G RFPL4AL1 ret finger protein like 4A like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:55,769,118...55,773,420
Ensembl chr19:55,769,118...55,773,420 		JBrowse link
G RNF152 ring finger protein 152 involved_in IMP
IBA
IEA		 (PMID:25936802) UniProt
GO_Central
Ensembl
InterPro		 PMID:25936802 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr18:61,808,067...61,894,412
Ensembl chr18:61,808,067...61,894,247 		JBrowse link
G ROCK1 Rho associated coiled-coil containing protein kinase 1 involved_in IGI (PMID:27853422) ARUK-UCL PMID:27853422 NCBI chr18:20,946,906...21,111,813
Ensembl chr18:20,944,612...21,111,813 		JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in IDA (PMID:36359729) UniProt PMID:36359729 NCBI chr 3:47,016,436...47,164,840
Ensembl chr 3:47,016,428...47,164,113 		JBrowse link
G SH3BP4 SH3 domain binding protein 4 involved_in IMP (PMID:22575674) UniProt PMID:22575674 NCBI chr 2:234,952,017...235,055,714
Ensembl chr 2:234,952,017...235,055,714 		JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in IMP (PMID:17891140) UniProt PMID:17891140 NCBI chr 1:86,704,576...86,748,184
Ensembl chr 1:86,704,570...86,748,184 		JBrowse link
G SLC35D3 solute carrier family 35 member D3 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:136,922,301...136,925,660
Ensembl chr 6:136,922,301...136,925,660 		JBrowse link
G SMO smoothened, frizzled class receptor ISO RGD PMID:31221056 RGD:150521664 NCBI chr 7:129,188,633...129,213,545
Ensembl chr 7:129,188,633...129,213,545 		JBrowse link
G SQSTM1 sequestosome 1 involved_in IDA (PMID:28871090) UniProt PMID:28871090 NCBI chr 5:179,806,393...179,838,078
Ensembl chr 5:179,806,398...179,838,078 		JBrowse link
G STK11 serine/threonine kinase 11 involved_in IMP (PMID:23878245) ParkinsonsUK-UCL PMID:23878245 NCBI chr19:1,205,778...1,228,431
Ensembl chr19:1,177,558...1,228,431 		JBrowse link
G SVIP small VCP interacting protein involved_in IMP
IBA		 (PMID:21909394) UniProt
GO_Central		 PMID:21909394 GO_REF:0000033 NCBI chr11:22,818,927...22,829,801
Ensembl chr11:22,813,799...22,830,299 		JBrowse link
G TBK1 TANK binding kinase 1 involved_in IDA (PMID:28871090) UniProt PMID:28871090 NCBI chr12:64,452,120...64,502,114
Ensembl chr12:64,452,090...64,502,114 		JBrowse link
G TFEB transcription factor EB involved_in IDA
IMP		 (PMID:21617040), (PMID:22576015)
(PMID:23434374)		 UniProt PMID:21617040 PMID:22576015 PMID:23434374 NCBI chr 6:41,683,978...41,736,223
Ensembl chr 6:41,683,978...41,736,259 		JBrowse link
G TICAM1 TIR domain containing adaptor molecule 1 involved_in IEA
ISS		 Ensembl
ParkinsonsUK-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr19:4,815,932...4,831,712
Ensembl chr19:4,815,932...4,831,712 		JBrowse link
G TLR9 toll like receptor 9 involved_in ISO
IEA		 RGD
Ensembl		 PMID:18632594 GO_REF:0000107 RGD:2301341 NCBI chr 3:52,221,080...52,225,645
Ensembl chr 3:52,221,080...52,225,645 		JBrowse link
G TMEM59 transmembrane protein 59 involved_in IMP
IBA
IEA		 (PMID:23376921) UniProt
GO_Central
TreeGrafter		 PMID:23376921 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:54,026,681...54,053,573
Ensembl chr 1:54,026,681...54,053,504 		JBrowse link
G TP53INP1 tumor protein p53 inducible nuclear protein 1 involved_in IMP (PMID:22421968), (PMID:22470510) UniProt PMID:22421968 PMID:22470510 NCBI chr 8:94,925,972...94,949,378
Ensembl chr 8:94,925,972...94,949,378 		JBrowse link
G TPCN1 two pore segment channel 1 involved_in IDA (PMID:22012985) ParkinsonsUK-UCL PMID:22012985 NCBI chr12:113,221,464...113,298,585
Ensembl chr12:113,221,050...113,298,585 		JBrowse link
G TRIM21 tripartite motif containing 21 involved_in IMP
IBA		 (PMID:26347139) UniProt
GO_Central		 PMID:26347139 GO_REF:0000033 NCBI chr11:4,384,897...4,393,702
Ensembl chr11:4,384,897...4,393,702 		JBrowse link
G TRIM22 tripartite motif containing 22 involved_in IMP
IEA
IBA		 (PMID:26347139) UniProt
TreeGrafter
GO_Central		 PMID:26347139 GO_REF:0000033 GO_REF:0000118 NCBI chr11:5,689,790...5,710,863
Ensembl chr11:5,689,610...5,737,089 		JBrowse link
G TRIM23 tripartite motif containing 23 involved_in IDA (PMID:28871090) UniProt PMID:28871090 NCBI chr 5:65,589,690...65,624,333
Ensembl chr 5:65,589,690...65,625,975 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IDA (PMID:31123703) UniProt PMID:31123703 NCBI chr 9:116,687,305...116,701,299
Ensembl chr 9:116,687,305...116,701,300 		JBrowse link
G TRIM34 tripartite motif containing 34 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:5,619,944...5,644,398
Ensembl chr11:5,619,764...5,644,398 		JBrowse link
G TRIM38 tripartite motif containing 38 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:25,962,802...25,991,231
Ensembl chr 6:25,962,802...25,991,231 		JBrowse link
G TRIM5 tripartite motif containing 5 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr11:5,588,635...5,685,074
Ensembl chr11:5,663,195...5,938,619 		JBrowse link
G TRIM58 tripartite motif containing 58 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:247,857,187...247,880,138
Ensembl chr 1:247,857,187...247,880,138 		JBrowse link
G TRIM6 tripartite motif containing 6 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr11:5,596,111...5,612,952
Ensembl chr11:5,596,109...5,612,958 		JBrowse link
G TRIM65 tripartite motif containing 65 involved_in IMP
IBA
IEA		 (PMID:26347139) UniProt
GO_Central
TreeGrafter		 PMID:26347139 GO_REF:0000033 GO_REF:0000118 NCBI chr17:75,879,537...75,896,951
Ensembl chr17:75,880,335...75,896,951 		JBrowse link
G TRIM68 tripartite motif containing 68 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:4,598,672...4,608,231
Ensembl chr11:4,598,672...4,608,231 		JBrowse link
G TRIM8 tripartite motif containing 8 involved_in IMP (PMID:26347139) UniProt PMID:26347139 NCBI chr10:102,644,479...102,658,319
Ensembl chr10:102,642,503...102,658,318 		JBrowse link
G TSC2 TSC complex subunit 2 involved_in ISO (MGI:5509101|PMID:23878245) ParkinsonsUK-UCL PMID:23878245 MGI:5509101 NCBI chr16:2,047,985...2,089,491
Ensembl chr16:2,047,967...2,089,491 		JBrowse link
G UBR4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:19,074,510...19,210,266
Ensembl chr 1:19,074,510...19,210,266 		JBrowse link
G UFL1 UFM1 specific ligase 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:96,521,806...96,555,276
Ensembl chr 6:96,521,595...96,555,276 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in ISS
IBA
IDA
ISO		 (PMID:25126726), (PMID:29487085), (PMID:35670107) UniProt
GO_Central
ComplexPortal		 PMID:25126726 PMID:29487085 PMID:35670107 GO_REF:0000024 GO_REF:0000033 GO_REF:0000114 NCBI chr12:131,894,622...131,923,150
Ensembl chr12:131,894,622...131,923,150 		JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr17:19,770,830...19,867,936
Ensembl chr17:19,770,829...19,867,936 		JBrowse link
G USP20 ubiquitin specific peptidase 20 involved_in IDA (PMID:29487085) UniProt PMID:29487085 NCBI chr 9:129,835,458...129,881,828
Ensembl chr 9:129,834,698...129,881,828 		JBrowse link
G XBP1 X-box binding protein 1 involved_in IDA (PMID:23184933) UniProt PMID:23184933 NCBI chr22:28,794,560...28,800,569
Ensembl chr22:28,794,555...28,800,597 		JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IDA
IEA		 (PMID:22739135) BHF-UCL
Ensembl		 PMID:22739135 GO_REF:0000107 NCBI chr 1:37,474,580...37,484,377
Ensembl chr 1:37,474,580...37,484,377 		JBrowse link
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2L11 BCL2 like 11 ISO RGD PMID:25772147 RGD:13782257 NCBI chr 2:111,120,914...111,168,445
Ensembl chr 2:111,119,378...111,168,444 		JBrowse link
G BID BH3 interacting domain death agonist ISO RGD PMID:25772147 RGD:13782257 NCBI chr22:17,734,138...17,774,665
Ensembl chr22:17,734,138...17,774,770 		JBrowse link
G DDIT3 DNA damage inducible transcript 3 ISO RGD PMID:25772147 RGD:13782257 NCBI chr12:57,516,588...57,520,517
Ensembl chr12:57,516,588...57,521,737 		JBrowse link
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BNIP3 BCL2 interacting protein 3 involved_in ISO
IEA		 RGD
Ensembl		 PMID:23698117 GO_REF:0000107 RGD:11561968 NCBI chr10:131,967,684...131,981,923
Ensembl chr10:131,967,684...131,981,967 		JBrowse link
G CAMKK2 calcium/calmodulin dependent protein kinase kinase 2 involved_in IC (PMID:26103054) ParkinsonsUK-UCL PMID:26103054 NCBI chr12:121,237,692...121,297,819
Ensembl chr12:121,237,675...121,298,308 		JBrowse link
G FBXO7 F-box protein 7 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr22:32,474,811...32,498,829
Ensembl chr22:32,474,676...32,498,829 		JBrowse link
G PARK7 Parkinsonism associated deglycase involved_in NAS (PMID:24531622) ParkinsonsUK-UCL PMID:24531622 NCBI chr 1:7,961,711...7,985,505
Ensembl chr 1:7,954,291...7,985,505 		JBrowse link
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLK3 polo like kinase 3 involved_in IDA (PMID:27344333) ParkinsonsUK-UCL PMID:27344333 NCBI chr 1:44,800,377...44,805,990
Ensembl chr 1:44,800,377...44,805,990 		JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADRB2 adrenoceptor beta 2 involved_in IDA (PMID:23708524) GO_Central PMID:23708524 NCBI chr 5:148,826,611...148,828,623
Ensembl chr 5:148,826,611...148,828,623 		JBrowse link
G HTT huntingtin involved_in IMP (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chr 4:3,074,681...3,243,960
Ensembl chr 4:3,041,363...3,243,957 		JBrowse link
G SESN2 sestrin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22958918) Ensembl
MGI		 PMID:22958918 GO_REF:0000107 NCBI chr 1:28,259,518...28,282,491
Ensembl chr 1:28,259,518...28,282,491 		JBrowse link
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 acts_upstream_of_or_within IDA (PMID:25332431) MGI PMID:25332431 NCBI chr 9:92,031,147...92,115,413
Ensembl chr 9:92,000,087...92,115,413 		JBrowse link
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 acts_upstream_of_or_within IDA (PMID:25332431) MGI PMID:25332431 NCBI chr14:77,505,997...77,616,637
Ensembl chr14:77,505,997...77,616,637 		JBrowse link
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BNIP3 BCL2 interacting protein 3 acts_upstream_of_or_within IGI (PMID:19273585) MGI PMID:19273585 NCBI chr10:131,967,684...131,981,923
Ensembl chr10:131,967,684...131,981,967 		JBrowse link
G BNIP3L BCL2 interacting protein 3 like acts_upstream_of_or_within IGI (PMID:19273585) MGI PMID:19273585 NCBI chr 8:26,383,054...26,413,127
Ensembl chr 8:26,383,054...26,505,636 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IGI
IMP		 (PMID:27103069)
(PMID:27103069), (PMID:27334615)		 HGNC PMID:27103069 PMID:27334615 NCBI chr 9:27,546,546...27,573,866
Ensembl chr 9:27,535,640...27,573,866 		JBrowse link
G DCN decorin acts_upstream_of_or_within IDA
IGI		 (PMID:23798385) MGI PMID:23798385 NCBI chr12:91,140,484...91,182,817
Ensembl chr12:91,140,484...91,183,217 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin acts_upstream_of_or_within
involved_in		 IMP
IEA		 (PMID:20453062) MGI
Ensembl		 PMID:20453062 GO_REF:0000107 NCBI chr 6:145,383,353...145,736,023
Ensembl chr 6:145,382,535...145,736,023 		JBrowse link
G GNAI3 G protein subunit alpha i3 involved_in IMP (PMID:12642577) UniProt PMID:12642577 NCBI chr 1:109,548,615...109,600,195
Ensembl chr 1:109,548,615...109,600,195 		JBrowse link
G GPSM1 G protein signaling modulator 1 involved_in IDA (PMID:12642577) UniProt PMID:12642577 NCBI chr 9:136,327,539...136,359,601
Ensembl chr 9:136,327,476...136,359,605 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19273585) Ensembl
MGI		 PMID:19273585 GO_REF:0000107 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259 		JBrowse link
G HMOX1 heme oxygenase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20705711) Ensembl
MGI		 PMID:20705711 GO_REF:0000107 NCBI chr22:35,381,096...35,394,207
Ensembl chr22:35,380,361...35,394,214 		JBrowse link
G IKBKG inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr  X:154,541,238...154,565,046
Ensembl chr  X:154,541,199...154,565,046 		JBrowse link
G IL4 interleukin 4 involved_in ISS
IEA		 UniProt
TreeGrafter		 GO_REF:0000024 GO_REF:0000118 NCBI chr 5:132,673,989...132,682,678
Ensembl chr 5:132,673,986...132,682,678 		JBrowse link
G KDR kinase insert domain receptor acts_upstream_of_or_within IGI (PMID:23798385) MGI PMID:23798385 NCBI chr 4:55,078,481...55,125,595
Ensembl chr 4:55,078,481...55,125,595 		JBrowse link
G LACRT lacritin involved_in IDA (PMID:23640897) FlyBase PMID:23640897 NCBI chr12:54,630,811...54,634,895
Ensembl chr12:54,630,811...54,634,895 		JBrowse link
G LARP1 La ribonucleoprotein 1, translational regulator involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr 5:154,682,979...154,817,605
Ensembl chr 5:154,682,986...154,817,605 		JBrowse link
G MAP3K7 mitogen-activated protein kinase kinase kinase 7 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 6:90,513,579...90,587,072
Ensembl chr 6:90,513,573...90,587,086 		JBrowse link
G PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr11:117,144,287...117,178,173
Ensembl chr11:117,144,284...117,176,894 		JBrowse link
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17476689) Ensembl
MGI		 PMID:17476689 GO_REF:0000107 NCBI chr  X:48,913,182...48,919,024
Ensembl chr  X:48,913,182...48,919,024 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IMP (PMID:20871098) ParkinsonsUK-UCL PMID:20871098 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511 		JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in TAS (PMID:25126726) ParkinsonsUK-UCL PMID:25126726 NCBI chr 1:56,645,314...56,715,335
Ensembl chr 1:56,645,314...56,715,335 		JBrowse link
G RAB12 RAB12, member RAS oncogene family involved_in ISO (MGI:5574288|PMID:23357852) UniProt PMID:23357852 MGI:5574288 NCBI chr18:8,609,437...8,639,383
Ensembl chr18:8,609,437...8,639,383 		JBrowse link
G RUFY4 RUN and FYVE domain containing 4 involved_in IEA
IBA
IMP		 (PMID:26416964) InterPro
GO_Central
UniProt		 PMID:26416964 GO_REF:0000002 GO_REF:0000033 NCBI chr 2:218,034,934...218,090,652
Ensembl chr 2:218,034,960...218,090,584 		JBrowse link
G SCOC short coiled-coil protein involved_in IDA (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr 4:140,257,308...140,385,728
Ensembl chr 4:140,257,286...140,385,728 		JBrowse link
G SESN1 sestrin 1 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:108,984,309...109,094,846
Ensembl chr 6:108,984,309...109,094,846 		JBrowse link
G SESN2 sestrin 2 involved_in IMP
IBA		 (PMID:23274085) UniProt
GO_Central		 PMID:23274085 GO_REF:0000033 NCBI chr 1:28,259,518...28,282,491
Ensembl chr 1:28,259,518...28,282,491 		JBrowse link
G SESN3 sestrin 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:95,165,513...95,232,475
Ensembl chr11:95,165,513...95,232,541 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA
IDA		 (PMID:18296641) Ensembl
UniProt		 PMID:18296641 GO_REF:0000107 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390 		JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 involved_in IEA
IBA
IDA		 (PMID:30568238), (PMID:30842662), (PMID:37535724) Ensembl
TreeGrafter
GO_Central
UniProt		 PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:139,475,533...139,482,758
Ensembl chr 5:139,475,533...139,482,935 		JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr19:39,445,582...39,476,670
Ensembl chr19:39,436,156...39,476,670 		JBrowse link
G TBK1 TANK binding kinase 1 involved_in IDA (PMID:27103069) HGNC PMID:27103069 NCBI chr12:64,452,120...64,502,114
Ensembl chr12:64,452,090...64,502,114 		JBrowse link
G TRIM13 tripartite motif containing 13 involved_in IDA
IBA
IEA		 (PMID:22178386) UniProt
GO_Central
TreeGrafter		 PMID:22178386 GO_REF:0000033 GO_REF:0000118 NCBI chr13:49,997,042...50,018,467
Ensembl chr13:49,995,888...50,020,481 		JBrowse link
G TSC1 TSC complex subunit 1 ISO RGD PMID:23435171 RGD:10448950 NCBI chr 9:132,891,349...132,945,378
Ensembl chr 9:132,891,348...132,946,874 		JBrowse link
G TSC2 TSC complex subunit 2 involved_in
acts_upstream_of_or_within		 IGI
ISO		 (PMID:23778976)
(PMID:20453062)		 ParkinsonsUK-UCL
MGI		 PMID:20453062 PMID:23778976 NCBI chr16:2,047,985...2,089,491
Ensembl chr16:2,047,967...2,089,491 		JBrowse link
G WAC WW domain containing adaptor with coiled-coil involved_in IMP (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr10:28,532,779...28,623,112
Ensembl chr10:28,532,493...28,623,112 		JBrowse link
G WDR24 WD repeat domain 24 involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:684,622...690,398
Ensembl chr16:684,622...690,444 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IDA (PMID:30217973) UniProt PMID:30217973 NCBI chr11:46,396,412...46,594,023
Ensembl chr11:46,396,414...46,594,125 		JBrowse link
G CERS1 ceramide synthase 1 involved_in IDA (PMID:22922758) UniProt PMID:22922758 NCBI chr19:18,868,545...18,896,982
Ensembl chr19:18,868,545...18,896,727 		JBrowse link
G DELE1 DAP3 binding cell death enhancer 1 involved_in IDA (PMID:38340717) UniProt PMID:38340717 NCBI chr 5:141,923,871...141,942,047
Ensembl chr 5:141,923,855...141,942,047 		JBrowse link
G EIF2AK1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in IDA (PMID:38340717) UniProt PMID:38340717 NCBI chr 7:6,022,247...6,059,175
Ensembl chr 7:6,022,247...6,059,175 		JBrowse link
G FBXO7 F-box protein 7 involved_in IEA
IDA		 (PMID:26310625) Ensembl
ParkinsonsUK-UCL		 PMID:26310625 GO_REF:0000107 NCBI chr22:32,474,811...32,498,829
Ensembl chr22:32,474,676...32,498,829 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259 		JBrowse link
G HTT huntingtin involved_in IMP (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chr 4:3,074,681...3,243,960
Ensembl chr 4:3,041,363...3,243,957 		JBrowse link
G IRGM immunity related GTPase M involved_in IDA (PMID:21102437), (PMID:32939830) UniProt PMID:21102437 PMID:32939830 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,521...150,900,736 		JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr16:50,693,606...50,733,075
Ensembl chr16:50,693,588...50,733,077 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in ISO
IDA		 (PMID:26310625) RGD
ParkinsonsUK-UCL		 PMID:26310625 PMID:28608965 RGD:13432560 NCBI chr 6:161,347,417...162,727,766
Ensembl chr 6:161,347,417...162,727,775 		JBrowse link
G SLC25A4 solute carrier family 25 member 4 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:185,143,266...185,150,382
Ensembl chr 4:185,143,266...185,150,382 		JBrowse link
G SLC25A5 solute carrier family 25 member 5 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:119,468,444...119,471,396
Ensembl chr  X:119,468,422...119,471,396 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr16:680,410...682,801
Ensembl chr16:680,224...682,870 		JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A involved_in IDA (PMID:23685073) UniProt PMID:23685073 NCBI chr  X:119,574,563...119,584,423
Ensembl chr  X:119,474,802...119,591,083 		JBrowse link
G VPS13D vacuolar protein sorting 13 homolog D involved_in IMP (PMID:29307555) UniProt PMID:29307555 NCBI chr 1:12,230,030...12,512,047
Ensembl chr 1:12,230,030...12,512,047 		JBrowse link
positive regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VDAC1 voltage dependent anion channel 1 involved_in IMP (PMID:32047033) UniProt PMID:32047033 NCBI chr 5:133,971,871...134,114,540
Ensembl chr 5:133,971,871...134,004,975 		JBrowse link
positive regulation of reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK5RAP3 CDK5 regulatory subunit associated protein 3 involved_in IDA
IMP		 (PMID:36543799)
(PMID:32851973)		 UniProt PMID:32851973 PMID:36543799 NCBI chr17:47,967,904...47,981,781
Ensembl chr17:47,967,810...47,981,781 		JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IDA (PMID:36543799) UniProt PMID:36543799 NCBI chr20:3,190,350...3,204,682
Ensembl chr20:3,190,350...3,204,685 		JBrowse link
G UFL1 UFM1 specific ligase 1 involved_in IDA (PMID:36543799) UniProt PMID:36543799 NCBI chr 6:96,521,806...96,555,276
Ensembl chr 6:96,521,595...96,555,276 		JBrowse link
positive regulation of xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRGM immunity related GTPase M involved_in IDA (PMID:25891078) UniProt PMID:25891078 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,521...150,900,736 		JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in IMP (PMID:23245322) GO_Central PMID:23245322 NCBI chr 9:127,451,486...127,503,501
Ensembl chr 9:127,451,489...127,503,499 		JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chr16:30,114,105...30,123,220
Ensembl chr16:30,114,105...30,123,506 		JBrowse link
G NOD1 nucleotide binding oligomerization domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chr 7:30,424,527...30,478,784
Ensembl chr 7:30,424,527...30,478,784 		JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chr16:50,693,606...50,733,075
Ensembl chr16:50,693,588...50,733,077 		JBrowse link
G OPTN optineurin involved_in IMP (PMID:21617041) ParkinsonsUK-UCL PMID:21617041 NCBI chr10:13,100,082...13,138,308
Ensembl chr10:13,099,449...13,138,308 		JBrowse link
G RIPK2 receptor interacting serine/threonine kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22033934) Ensembl
MGI		 PMID:22033934 GO_REF:0000107 NCBI chr 8:89,757,816...89,791,064
Ensembl chr 8:89,757,806...89,791,064 		JBrowse link
G RNF31 ring finger protein 31 involved_in IDA (PMID:28481331) UniProt PMID:28481331 NCBI chr14:24,146,875...24,160,655
Ensembl chr14:24,146,683...24,160,660 		JBrowse link
G TBK1 TANK binding kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:64,452,120...64,502,114
Ensembl chr12:64,452,090...64,502,114 		JBrowse link
G TLR2 toll like receptor 2 acts_upstream_of_or_within ISO (PMID:22033934) MGI PMID:22033934 NCBI chr 4:153,684,280...153,710,637
Ensembl chr 4:153,684,070...153,706,260 		JBrowse link
regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG12 autophagy related 12 involved_in IMP (PMID:22342342) ComplexPortal PMID:22342342 NCBI chr 5:115,828,200...115,841,565
Ensembl chr 5:115,828,200...115,841,837 		JBrowse link
G ATG5 autophagy related 5 involved_in IMP (PMID:22342342) ComplexPortal PMID:22342342 NCBI chr 6:106,184,476...106,325,760
Ensembl chr 6:106,045,423...106,325,791 		JBrowse link
G CLEC16A C-type lectin domain containing 16A involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:10,944,564...11,182,186
Ensembl chr16:10,944,539...11,182,186 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr16:28,466,653...28,492,082
Ensembl chr16:28,474,111...28,495,575 		JBrowse link
G TBC1D25 TBC1 domain family member 25 involved_in IMP
IEA
IBA		 (PMID:21383079) UniProt
TreeGrafter
GO_Central		 PMID:21383079 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:48,539,714...48,562,609
Ensembl chr  X:48,539,714...48,562,609 		JBrowse link
G TECPR1 tectonin beta-propeller repeat containing 1 involved_in IMP (PMID:22342342) ComplexPortal PMID:22342342 NCBI chr 7:98,214,624...98,252,232
Ensembl chr 7:98,214,624...98,252,232 		JBrowse link
regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in TAS (PMID:25548531) ParkinsonsUK-UCL PMID:25548531 NCBI chr 1:16,985,958...17,011,928
Ensembl chr 1:16,985,958...17,011,928 		JBrowse link
G HAX1 HCLS1 associated protein X-1 involved_in TAS (PMID:24522549) ParkinsonsUK-UCL PMID:24522549 NCBI chr 1:154,272,629...154,275,875
Ensembl chr 1:154,272,355...154,275,875 		JBrowse link
G HDAC6 histone deacetylase 6 involved_in TAS (PMID:25548531) ParkinsonsUK-UCL PMID:25548531 NCBI chr  X:48,801,398...48,824,982
Ensembl chr  X:48,801,377...48,824,982 		JBrowse link
G HTRA2 HtrA serine peptidase 2 involved_in TAS (PMID:24522549) ParkinsonsUK-UCL PMID:24522549 NCBI chr 2:74,529,405...74,533,556
Ensembl chr 2:74,529,596...74,533,350 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in TAS (PMID:21563316) ParkinsonsUK-UCL PMID:21563316 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511 		JBrowse link
G VDAC1 voltage dependent anion channel 1 involved_in NAS (PMID:20098416) ParkinsonsUK-UCL PMID:20098416 NCBI chr 5:133,971,871...134,114,540
Ensembl chr 5:133,971,871...134,004,975 		JBrowse link
regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in TAS (PMID:22885599) ParkinsonsUK-UCL PMID:22885599 NCBI chr 1:16,985,958...17,011,928
Ensembl chr 1:16,985,958...17,011,928 		JBrowse link
G CTSA cathepsin A involved_in TAS (PMID:20176123) ParkinsonsUK-UCL PMID:20176123 NCBI chr20:45,891,335...45,898,820
Ensembl chr20:45,890,144...45,898,949 		JBrowse link
G EEF1A1 eukaryotic translation elongation factor 1 alpha 1 involved_in NAS (PMID:20797626) ParkinsonsUK-UCL PMID:20797626 NCBI chr 6:73,515,750...73,521,032
Ensembl chr 6:73,489,308...73,525,587 		JBrowse link
G EEF1A2 eukaryotic translation elongation factor 1 alpha 2 involved_in NAS (PMID:20797626) ParkinsonsUK-UCL PMID:20797626 NCBI chr20:63,488,014...63,499,083
Ensembl chr20:63,488,013...63,499,239 		JBrowse link
G GFAP glial fibrillary acidic protein involved_in ISS
IEA
IBA
TAS		 (PMID:20176123) ParkinsonsUK-UCL
TreeGrafter
GO_Central
Ensembl		 PMID:20176123 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr17:44,903,159...44,915,500
Ensembl chr17:44,903,159...44,916,937 		JBrowse link
regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG14 autophagy related 14 involved_in IDA (PMID:10625637) ComplexPortal PMID:10625637 NCBI chr14:55,366,391...55,411,830
Ensembl chr14:55,366,391...55,411,830 		JBrowse link
G ATP13A2 ATPase cation transporting 13A2 involved_in IMP
TAS		 (PMID:22198378)
(PMID:22885599)		 ParkinsonsUK-UCL PMID:22198378 PMID:22885599 NCBI chr 1:16,985,958...17,011,928
Ensembl chr 1:16,985,958...17,011,928 		JBrowse link
G ATP6V0A1 ATPase H+ transporting V0 subunit a1 involved_in IMP (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr17:42,458,878...42,522,579
Ensembl chr17:42,458,844...42,522,582 		JBrowse link
G ATP6V0A2 ATPase H+ transporting V0 subunit a2 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr12:123,712,353...123,761,755
Ensembl chr12:123,712,353...123,761,755 		JBrowse link
G ATP6V0B ATPase H+ transporting V0 subunit b involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 1:43,974,960...43,978,295
Ensembl chr 1:43,974,487...43,978,295 		JBrowse link
G ATP6V0C ATPase H+ transporting V0 subunit c involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr16:2,513,726...2,520,218
Ensembl chr16:2,513,952...2,520,218 		JBrowse link
G ATP6V0D1 ATPase H+ transporting V0 subunit d1 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr16:67,438,019...67,481,157
Ensembl chr16:67,438,014...67,481,181 		JBrowse link
G ATP6V0D2 ATPase H+ transporting V0 subunit d2 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 8:86,098,910...86,154,225
Ensembl chr 8:85,987,323...86,154,225 		JBrowse link
G ATP6V0E1 ATPase H+ transporting V0 subunit e1 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 5:172,983,771...173,035,445
Ensembl chr 5:172,983,771...173,035,445 		JBrowse link
G ATP6V0E2 ATPase H+ transporting V0 subunit e2 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 7:149,872,964...149,880,713
Ensembl chr 7:149,872,968...149,891,204 		JBrowse link
G ATP6V1A ATPase H+ transporting V1 subunit A involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 3:113,747,035...113,812,056
Ensembl chr 3:113,746,770...113,812,056 		JBrowse link
G ATP6V1B1 ATPase H+ transporting V1 subunit B1 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 2:70,935,900...70,965,431
Ensembl chr 2:70,935,900...70,965,431 		JBrowse link
G ATP6V1B2 ATPase H+ transporting V1 subunit B2 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 8:20,197,381...20,221,696
Ensembl chr 8:20,197,381...20,226,819 		JBrowse link
G ATP6V1C1 ATPase H+ transporting V1 subunit C1 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 8:103,021,083...103,073,051
Ensembl chr 8:103,021,063...103,073,051 		JBrowse link
G ATP6V1C2 ATPase H+ transporting V1 subunit C2 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 2:10,720,943...10,785,110
Ensembl chr 2:10,721,100...10,785,110 		JBrowse link
G ATP6V1D ATPase H+ transporting V1 subunit D involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr14:67,337,872...67,359,804
Ensembl chr14:67,294,371...67,360,265 		JBrowse link
G ATP6V1E1 ATPase H+ transporting V1 subunit E1 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr22:17,592,136...17,628,822
Ensembl chr22:17,592,136...17,628,749 		JBrowse link
G ATP6V1E2 ATPase H+ transporting V1 subunit E2 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 2:46,511,847...46,542,577
Ensembl chr 2:46,490,750...46,542,577 		JBrowse link
G ATP6V1G1 ATPase H+ transporting V1 subunit G1 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 9:114,587,769...114,598,879
Ensembl chr 9:114,587,706...114,598,915 		JBrowse link
G ATP6V1G2 ATPase H+ transporting V1 subunit G2 involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 6:31,544,444...31,546,742
Ensembl chr 6:31,544,444...31,548,427 		JBrowse link
G ATP6V1H ATPase H+ transporting V1 subunit H involved_in NAS (PMID:22982048) ParkinsonsUK-UCL PMID:22982048 NCBI chr 8:53,715,543...53,843,245
Ensembl chr 8:53,715,543...53,843,558 		JBrowse link
G BECN1 beclin 1 involved_in IDA (PMID:10625637) ComplexPortal PMID:10625637 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G CAPN1 calpain 1 involved_in NAS (PMID:17264674) ParkinsonsUK-UCL PMID:17264674 NCBI chr11:65,181,373...65,212,006
Ensembl chr11:65,180,566...65,212,006 		JBrowse link
G CAPNS1 calpain small subunit 1 involved_in NAS (PMID:17264674) ParkinsonsUK-UCL PMID:17264674 NCBI chr19:36,140,066...36,150,353
Ensembl chr19:36,139,953...36,150,353 		JBrowse link
G CASP3 caspase 3 involved_in TAS (PMID:19549685) ParkinsonsUK-UCL PMID:19549685 NCBI chr 4:184,627,696...184,649,447
Ensembl chr 4:184,627,696...184,650,062 		JBrowse link
G CDK5 cyclin dependent kinase 5 involved_in TAS (PMID:21499257) ParkinsonsUK-UCL PMID:21499257 NCBI chr 7:151,053,815...151,057,897
Ensembl chr 7:151,053,815...151,057,897 		JBrowse link
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 involved_in NAS (PMID:21499257) ParkinsonsUK-UCL PMID:21499257 NCBI chr17:32,486,993...32,491,253
Ensembl chr17:32,486,993...32,491,253 		JBrowse link
G ERN1 endoplasmic reticulum to nucleus signaling 1 involved_in TAS (PMID:22013210) ParkinsonsUK-UCL PMID:22013210 NCBI chr17:64,039,142...64,130,144
Ensembl chr17:64,039,080...64,130,819 		JBrowse link
G EXOC1 exocyst complex component 1 involved_in TAS (PMID:21241894) ParkinsonsUK-UCL PMID:21241894 NCBI chr 4:55,853,648...55,905,086
Ensembl chr 4:55,853,648...55,905,086 		JBrowse link
G EXOC4 exocyst complex component 4 involved_in TAS (PMID:21241894) ParkinsonsUK-UCL PMID:21241894 NCBI chr 7:133,253,078...134,100,951
Ensembl chr 7:133,253,073...134,066,589 		JBrowse link
G EXOC7 exocyst complex component 7 involved_in TAS (PMID:21241894) ParkinsonsUK-UCL PMID:21241894 NCBI chr17:76,081,016...76,103,787
Ensembl chr17:76,081,016...76,121,576 		JBrowse link
G EXOC8 exocyst complex component 8 involved_in TAS (PMID:21241894) ParkinsonsUK-UCL PMID:21241894 NCBI chr 1:231,332,753...231,337,852
Ensembl chr 1:231,332,753...231,337,852 		JBrowse link
G GAPDH glyceraldehyde-3-phosphate dehydrogenase involved_in TAS (PMID:26626483) ParkinsonsUK-UCL PMID:26626483 NCBI chr12:6,534,517...6,538,371
Ensembl chr12:6,534,512...6,538,374 		JBrowse link
G GBA1 glucosylceramidase beta 1 involved_in TAS (PMID:26388395) ParkinsonsUK-UCL PMID:26388395 NCBI chr 1:155,234,452...155,244,627
Ensembl chr 1:155,234,452...155,244,699 		JBrowse link
G HDAC6 histone deacetylase 6 involved_in IMP (PMID:16192271) BHF-UCL PMID:16192271 NCBI chr  X:48,801,398...48,824,982
Ensembl chr  X:48,801,377...48,824,982 		JBrowse link
G MAPK8 mitogen-activated protein kinase 8 involved_in TAS (PMID:26546165) ParkinsonsUK-UCL PMID:26546165 NCBI chr10:48,306,677...48,439,360
Ensembl chr10:48,306,639...48,439,360 		JBrowse link
G MTMR8 myotubularin related protein 8 involved_in IMP (PMID:32915229) FlyBase PMID:32915229 NCBI chr  X:64,268,081...64,395,452
Ensembl chr  X:64,268,081...64,395,452 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in TAS Reactome Reactome:R-HSA-5672010 NCBI chr 1:11,106,535...11,262,551
Ensembl chr 1:11,106,535...11,262,556 		JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in TAS (PMID:25809873) ParkinsonsUK-UCL PMID:25809873 NCBI chr15:55,826,917...55,993,612
Ensembl chr15:55,826,922...55,993,660 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in IDA (PMID:10625637) ComplexPortal PMID:10625637 NCBI chr18:41,955,234...42,087,830
Ensembl chr18:41,955,234...42,087,830 		JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IDA (PMID:10625637) ComplexPortal PMID:10625637 NCBI chr 3:130,678,934...130,746,829
Ensembl chr 3:130,678,934...130,746,829 		JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:56,645,314...56,715,335
Ensembl chr 1:56,645,314...56,715,335 		JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha involved_in TAS (PMID:26046386) ParkinsonsUK-UCL PMID:26046386 NCBI chr19:14,091,688...14,117,762
Ensembl chr19:14,091,688...14,118,084 		JBrowse link
G RHEB Ras homolog, mTORC1 binding involved_in TAS Reactome Reactome:R-HSA-5672017 NCBI chr 7:151,466,012...151,519,895
Ensembl chr 7:151,466,012...151,520,120 		JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in TAS (PMID:21499257) ParkinsonsUK-UCL PMID:21499257 NCBI chr 1:86,704,576...86,748,184
Ensembl chr 1:86,704,570...86,748,184 		JBrowse link
G SNX32 sorting nexin 32 involved_in NAS (PMID:26172538) ParkinsonsUK-UCL PMID:26172538 NCBI chr11:65,833,963...65,853,701
Ensembl chr11:65,833,834...65,856,896 		JBrowse link
G SNX5 sorting nexin 5 involved_in NAS (PMID:26172538) ParkinsonsUK-UCL PMID:26172538 NCBI chr20:17,941,600...17,968,794
Ensembl chr20:17,941,597...17,968,980 		JBrowse link
G SNX6 sorting nexin 6 involved_in NAS (PMID:26172538) ParkinsonsUK-UCL PMID:26172538 NCBI chr14:34,561,093...34,630,148
Ensembl chr14:34,561,093...34,630,160 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:83,659,968...83,707,958
Ensembl chr 9:83,659,968...83,707,958 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IMP
IBA
IEA		 (PMID:20529957) UniProt
GO_Central
TreeGrafter		 PMID:20529957 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:56,563,627...56,567,868
Ensembl chr  X:56,563,627...56,567,868 		JBrowse link
G UCHL1 ubiquitin C-terminal hydrolase L1 involved_in TAS (PMID:24879150) ParkinsonsUK-UCL PMID:24879150 NCBI chr 4:41,256,928...41,268,455
Ensembl chr 4:41,256,413...41,268,455 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IDA (PMID:20921139) UniProt PMID:20921139 NCBI chr12:131,894,622...131,923,150
Ensembl chr12:131,894,622...131,923,150 		JBrowse link
G VPS26A VPS26 retromer complex component A involved_in TAS (PMID:26172538) ParkinsonsUK-UCL PMID:26172538 NCBI chr10:69,124,178...69,174,412
Ensembl chr10:69,123,512...69,174,412 		JBrowse link
G VPS26B VPS26 retromer complex component B involved_in TAS (PMID:26172538) ParkinsonsUK-UCL PMID:26172538 NCBI chr11:134,224,671...134,247,788
Ensembl chr11:134,224,671...134,247,788 		JBrowse link
G VPS35 VPS35 retromer complex component involved_in TAS (PMID:26172538) ParkinsonsUK-UCL PMID:26172538 NCBI chr16:46,656,132...46,689,178
Ensembl chr16:46,656,132...46,689,518 		JBrowse link
regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADCY10 adenylate cyclase 10 involved_in ISO
IEA		 RGD
Ensembl		 PMID:31172217 GO_REF:0000107 RGD:329403053 NCBI chr 1:167,809,386...167,914,134
Ensembl chr 1:167,809,386...167,914,215 		JBrowse link
G BNIP3L BCL2 interacting protein 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:26,383,054...26,413,127
Ensembl chr 8:26,383,054...26,505,636 		JBrowse link
G CSNK2A2 casein kinase 2 alpha 2 involved_in HMP (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr16:58,157,907...58,198,106
Ensembl chr16:58,157,907...58,198,106 		JBrowse link
G CTTN cortactin involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:70,398,529...70,436,575
Ensembl chr11:70,398,404...70,436,584 		JBrowse link
G DNM1L dynamin 1 like involved_in IGI (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chr12:32,679,301...32,745,650
Ensembl chr12:32,679,200...32,745,650 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IMP (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 4:152,320,544...152,536,092
Ensembl chr 4:152,320,544...152,536,092 		JBrowse link
G FKBP8 FKBP prolyl isomerase 8 involved_in IDA (PMID:28381481), (PMID:31908024) DisProt PMID:28381481 PMID:31908024 NCBI chr19:18,531,763...18,543,573
Ensembl chr19:18,531,751...18,544,077 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in HMP (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 2:207,762,598...207,769,906
Ensembl chr 2:207,762,598...207,769,906 		JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in IMP (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr19:42,230,190...42,242,602
Ensembl chr19:42,226,225...42,242,625 		JBrowse link
G PARL presenilin associated rhomboid like involved_in ISS
IEA		 (PMID:21355049) ParkinsonsUK-UCL
Ensembl		 PMID:21355049 GO_REF:0000107 NCBI chr 3:183,826,489...183,884,880
Ensembl chr 3:183,829,271...183,884,933 		JBrowse link
G SREBF1 sterol regulatory element binding transcription factor 1 involved_in IMP (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr17:17,811,334...17,836,986
Ensembl chr17:17,810,399...17,837,002 		JBrowse link
G SREBF2 sterol regulatory element binding transcription factor 2 involved_in HMP (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr22:41,833,105...41,907,305
Ensembl chr22:41,833,105...41,907,306 		JBrowse link
G USP36 ubiquitin specific peptidase 36 involved_in HMP (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr17:78,787,381...78,841,439
Ensembl chr17:78,787,381...78,841,441 		JBrowse link
G VDAC1 voltage dependent anion channel 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:133,971,871...134,114,540
Ensembl chr 5:133,971,871...134,004,975 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19669
    cellular process 18300
      process utilizing autophagic mechanism 638
        autophagy 638
          regulation of autophagy 387
            negative regulation of autophagy + 101
            positive regulation of autophagy + 172
            regulation of autophagy of mitochondrion + 45
            regulation of chaperone-mediated autophagy + 8
            regulation of macroautophagy + 186
            regulation of microlipophagy 0
Path 2
Term Annotations click to browse term
  biological_process 19669
    biological regulation 13397
      regulation of biological process 13016
        regulation of cellular process 12447
          regulation of cellular metabolic process 6706
            regulation of cellular catabolic process 497
              regulation of autophagy 387
                negative regulation of autophagy + 101
                positive regulation of autophagy + 172
                regulation of autophagy of mitochondrion + 45
                regulation of chaperone-mediated autophagy + 8
                regulation of macroautophagy + 186
                regulation of microlipophagy 0
paths to the root