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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gastrulation
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Accession:GO:0010470 term browser browse the term
Definition:Any process that modulates the rate or extent of gastrulation. Gastrulation is the complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals.


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regulation of gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:23940118) RGD PMID:23940118 NCBI chr13:29,493,554...29,715,151
Ensembl chr13:29,493,596...29,715,146
JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:113,677,345...113,859,957
Ensembl chr 8:113,677,284...113,858,731
JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5700252|PMID:26496195) RGD PMID:26496195 MGI:5700252 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294
JBrowse link
G Dag1 dystroglycan 1 involved_in ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:108,890,926...108,955,611
Ensembl chr 8:108,890,929...108,952,325
JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158682 (MGI:69170|PMID:7958910)
Ensembl
RGD
PMID:7958910 GO_REF:0000107 MGI:69170 NCBI chr 3:152,186,787...152,248,320
Ensembl chr 3:152,186,787...152,248,320
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:1194497|MGI:1915299 (MGI:4430444|PMID:20040491) RGD PMID:20040491 MGI:4430444 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Phldb1 pleckstrin homology-like domain, family B, member 1 involved_in ISO
IEA
(PMID:23940118)
GO_REF:0000107
RGD
Ensembl
PMID:23940118 GO_REF:0000107 NCBI chr 8:45,003,538...45,051,541
Ensembl chr 8:45,003,538...45,051,522
JBrowse link
G Phldb2 pleckstrin homology-like domain, family B, member 2 involved_in ISO (PMID:23940118) RGD PMID:23940118 NCBI chr11:54,859,173...55,078,212
Ensembl chr11:54,859,135...55,078,467
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5700252|PMID:26496195)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26496195 GO_REF:0000024 GO_REF:0000107 MGI:5700252 NCBI chr11:62,198,600...62,226,446
Ensembl chr11:62,198,513...62,226,434
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO MGI:1915299|MGI:97359 (MGI:4430444|PMID:20040491) RGD PMID:20040491 MGI:4430444 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802
JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO MGI:1194497|MGI:97359 (MGI:4430444|PMID:20040491) RGD PMID:20040491 MGI:4430444 NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
JBrowse link
positive regulation of gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISS
ISO
GO_REF:0000024
(MGI:2157654|PMID:11291865)
UniProt
RGD
PMID:11291865 GO_REF:0000024 MGI:2157654 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326
JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:2157654|PMID:11291865)
UniProt
RGD
PMID:11291865 GO_REF:0000024 MGI:2157654 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:21281489)
UniProt
RGD
PMID:21281489 GO_REF:0000024 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO (MGI:5009762|PMID:21281489) RGD PMID:21281489 MGI:5009762 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224
JBrowse link
G Otx2 orthodenticle homeobox 2 involved_in ISO (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:33,169,415...33,174,896
Ensembl chr10:33,169,169...33,174,975
JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:1343990|PMID:10477299) RGD PMID:10477299 MGI:1343990 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626
JBrowse link
G Tenm4 teneurin transmembrane protein 4 involved_in ISO (MGI:3531238|PMID:15489520) RGD PMID:15489520 MGI:3531238 NCBI chr 1:149,895,097...151,263,315
Ensembl chr 1:150,780,381...151,259,144
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    developmental process 6769
      anatomical structure morphogenesis 2887
        regulation of anatomical structure morphogenesis 1003
          regulation of gastrulation 19
            negative regulation of gastrulation 0
            positive regulation of gastrulation 8
            regulation of apical constriction involved in ventral furrow formation + 0
Path 2
Term Annotations click to browse term
  biological_process 19492
    developmental process 6769
      anatomical structure development 6195
        multicellular organism development 5632
          embryo development 1315
            embryonic morphogenesis 689
              gastrulation 206
                regulation of gastrulation 19
                  negative regulation of gastrulation 0
                  positive regulation of gastrulation 8
                  regulation of apical constriction involved in ventral furrow formation + 0
paths to the root