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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gastrulation
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Accession:GO:0010470 term browser browse the term
Definition:Any process that modulates the rate or extent of gastrulation. Gastrulation is the complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals.


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regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 ISO (PMID:23940118) RGD PMID:23940118 NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 ISO
IEA
(PMID:23940118)
GO_REF:0000107
RGD
Ensembl
PMID:23940118 GO_REF:0000107 NCBI chr 8:122,003,719...122,185,495
Ensembl chr 8:122,003,916...122,185,495
JBrowse link
G Crb2 crumbs cell polarity complex component 2 ISO (MGI:5700252|PMID:26496195) RGD PMID:26496195 MGI:5700252 NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871
JBrowse link
G Dag1 dystroglycan 1 ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha IEA
ISO
GO_REF:0000107
MGI:2158682 (MGI:69170|PMID:7958910)
Ensembl
RGD
PMID:7958910 GO_REF:0000107, MGI:69170 NCBI chr 3:159,902,441...159,965,003
Ensembl chr 3:159,902,441...159,965,003
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:1194497|MGI:1915299 (MGI:4430444|PMID:20040491) RGD PMID:20040491 MGI:4430444 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Phldb1 pleckstrin homology-like domain, family B, member 1 IEA
ISO
GO_REF:0000107
(PMID:23940118)
Ensembl
RGD
PMID:23940118 GO_REF:0000107 NCBI chr 8:48,997,189...49,045,176
Ensembl chr 8:48,997,184...49,045,154
JBrowse link
G Phldb2 pleckstrin homology-like domain, family B, member 2 ISO (PMID:23940118) RGD PMID:23940118 NCBI chr11:60,042,879...60,051,229
Ensembl chr11:57,265,732...57,481,589
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 ISS
ISO
IEA
GO_REF:0000024
(MGI:5700252|PMID:26496195)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26496195 GO_REF:0000024, GO_REF:0000107, MGI:5700252 NCBI chr11:64,761,493...64,788,210
Ensembl chr11:64,761,146...64,788,208
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 ISO MGI:1915299|MGI:97359 (MGI:4430444|PMID:20040491) RGD PMID:20040491 MGI:4430444 NCBI chr 9:119,181,079...119,190,698
Ensembl chr 9:119,181,083...119,190,698
JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 ISO MGI:1194497|MGI:97359 (MGI:4430444|PMID:20040491) RGD PMID:20040491 MGI:4430444 NCBI chr 3:152,906,961...152,924,380
Ensembl chr 3:152,909,189...152,924,377
JBrowse link
positive regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 ISS
ISO
GO_REF:0000024
(MGI:2157654|PMID:11291865)
UniProt
RGD
PMID:11291865 GO_REF:0000024, MGI:2157654 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
(MGI:2157654|PMID:11291865)
UniProt
RGD
PMID:11291865 GO_REF:0000024, MGI:2157654 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO
ISS
(PMID:21281489)
GO_REF:0000024
RGD
UniProt
PMID:21281489 GO_REF:0000024 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO (MGI:5009762|PMID:21281489) RGD PMID:21281489 MGI:5009762 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Rack1 receptor for activated C kinase 1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:34,149,717...34,155,198
Ensembl chr10:34,149,717...34,155,198
Ensembl chr12:34,149,717...34,155,198
JBrowse link
G Scx scleraxis bHLH transcription factor ISO (MGI:1343990|PMID:10477299) RGD PMID:10477299 MGI:1343990 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Tenm4 teneurin transmembrane protein 4 ISO (MGI:3531238|PMID:15489520) RGD PMID:15489520 MGI:3531238 NCBI chr 1:161,183,858...161,885,094
Ensembl chr 1:161,401,527...161,880,923
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure morphogenesis 2879
        regulation of anatomical structure morphogenesis 994
          regulation of gastrulation 19
            negative regulation of gastrulation 0
            positive regulation of gastrulation 8
            regulation of apical constriction involved in ventral furrow formation + 0
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          embryo development 1307
            embryonic morphogenesis 690
              gastrulation 208
                regulation of gastrulation 19
                  negative regulation of gastrulation 0
                  positive regulation of gastrulation 8
                  regulation of apical constriction involved in ventral furrow formation + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.