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ONTOLOGY REPORT - ANNOTATIONS


Term:chromocenter
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Accession:GO:0010369 term browser browse the term
Definition:A region in which centric, heterochromatic portions from more than one chromosomes form a compact structure.



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chromocenter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aurkb aurora kinase B located_in ISO (MGI:3839184|PMID:19283064) RGD PMID:19283064 MGI:3839184 NCBI chr10:53,744,290...53,750,831
Ensembl chr10:53,745,142...53,750,837
JBrowse link
G Cbx1 chromobox 1 located_in ISO (MGI:3512848|PMID:15322135), (MGI:3702345|PMID:17261847) RGD PMID:15322135 PMID:17261847 MGI:3512848 MGI:3702345 NCBI chr10:81,770,307...81,789,981
Ensembl chr10:81,770,342...81,791,096
JBrowse link
G Cbx3 chromobox 3 located_in ISO (MGI:3512848|PMID:15322135) RGD PMID:15322135 MGI:3512848 NCBI chr 4:80,545,450...80,559,284
Ensembl chr 4:80,546,010...80,559,283
JBrowse link
G Cbx5 chromobox 5 located_in ISO (MGI:3707931|PMID:17284516), (MGI:4440672|PMID:20219459), (MGI:5306174|PMID:22101327) RGD PMID:17284516 PMID:20219459 PMID:22101327 MGI:3707931 MGI:4440672 MGI:5306174 NCBI chr 7:134,333,165...134,376,102
Ensembl chr 7:134,331,335...134,375,022
JBrowse link
G Cdca8 cell division cycle associated 8 located_in ISO (MGI:3839184|PMID:19283064) RGD PMID:19283064 MGI:3839184 NCBI chr 5:137,176,414...137,198,686
Ensembl chr 5:137,176,417...137,198,629
JBrowse link
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 located_in ISO (MGI:5306174|PMID:22101327) RGD PMID:22101327 MGI:5306174 NCBI chr15:40,034,566...40,052,295
Ensembl chr15:40,034,568...40,055,306
JBrowse link
G Fmr1 FMRP translational regulator 1 located_in ISS
ISO
GO_REF:0000024
(MGI:5602914|PMID:24813610)
UniProt
RGD
PMID:24813610 GO_REF:0000024 MGI:5602914 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Incenp inner centromere protein located_in ISO (MGI:3839184|PMID:19283064) RGD PMID:19283064 MGI:3839184 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
JBrowse link
G Mbd5 methyl-CpG binding domain protein 5 located_in
is_active_in
ISO
IBA
(PMID:20700456)
PMID:21873635
RGD PMID:20700456 PMID:21873635 RGD:13792537 NCBI chr 3:33,588,854...33,738,730
Ensembl chr 3:33,333,554...33,730,156
JBrowse link
G Mbd6 methyl-CpG binding domain protein 6 located_in
is_active_in
ISO
IBA
(PMID:20700456)
PMID:21873635
RGD PMID:20700456 PMID:21873635 RGD:13792537 NCBI chr 7:63,107,562...63,115,841
Ensembl chr 7:63,107,562...63,113,274
JBrowse link
G Oip5 Opa interacting protein 5 located_in ISO (MGI:3707931|PMID:17284516) RGD PMID:17284516 MGI:3707931 NCBI chr 3:106,593,746...106,603,281
Ensembl chr 3:106,593,760...106,603,250
JBrowse link
G Sall1 spalt-like transcription factor 1 located_in ISO (PMID:16443351) RGD PMID:16443351 NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705
JBrowse link
G Scmh1 Scm polycomb group protein homolog 1 located_in ISO (MGI:3703453|PMID:17215307) RGD PMID:17215307 MGI:3703453 NCBI chr 5:133,991,167...134,115,893
Ensembl chr 5:133,990,520...134,122,105
JBrowse link
G Sox30 SRY-box transcription factor 30 located_in ISO (MGI:6191808|PMID:29848638) RGD PMID:29848638 MGI:6191808 NCBI chr10:30,417,499...30,446,441
Ensembl chr10:30,418,473...30,446,453
JBrowse link
G Taf7l TATA-box binding protein associated factor 7-like NOT|located_in ISO (MGI:2661255|PMID:12665565) RGD PMID:12665565 MGI:2661255 NCBI chr  X:97,660,222...97,675,241
Ensembl chr  X:97,660,222...97,675,023
JBrowse link
G Trim66 tripartite motif-containing 66 located_in ISO (MGI:3512848|PMID:15322135) RGD PMID:15322135 MGI:3512848 NCBI chr 1:163,468,944...163,539,633
Ensembl chr 1:163,470,350...163,537,185
JBrowse link
perinucleolar chromocenter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Piwil2 piwi-like RNA-mediated gene silencing 2 located_in ISO (MGI:5049827|PMID:21539824) RGD PMID:21539824 MGI:5049827 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702
JBrowse link
G Tinf2 TERF1 interacting nuclear factor 2 located_in ISO (PMID:15741234) RGD PMID:15741234 NCBI chr15:29,170,663...29,178,015
Ensembl chr15:29,170,652...29,176,984
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      organelle 13088
        non-membrane-bounded organelle 4906
          intracellular non-membrane-bounded organelle 4906
            chromocenter 18
              perinucleolar chromocenter 2
              polytene chromosome chromocenter + 0
paths to the root