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ONTOLOGY REPORT - ANNOTATIONS


Term:dorsal/ventral pattern formation
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Accession:GO:0009953 term browser browse the term
Definition:The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
Synonyms:exact_synonym: dorsoventral pattern formation
 narrow_synonym: dorsal/ventral pattern specification



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dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr15:64,749,478...64,891,653
Ensembl chr15:64,748,761...64,892,153
JBrowse link
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (MGI:2449253|PMID:12645927) MGI PMID:12645927 MGI:2449253 NCBI chr 2:116,913,354...116,985,303
Ensembl chr 2:116,812,582...117,034,912
JBrowse link
G ARL13B ADP ribosylation factor like GTPase 13B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3577662|PMID:15755804) Ensembl
Ensembl
MGI
PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr13:165,829,772...165,910,959
Ensembl chr13:165,828,059...165,911,011
JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3797993|PMID:18316368) MGI
Ensembl
PMID:18316368 GO_REF:0000107 MGI:3797993 NCBI chr 3:41,344,908...41,393,999
Ensembl chr 3:41,337,071...41,393,997
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3574003|PMID:15673568) MGI
Ensembl
PMID:15673568 GO_REF:0000107 MGI:3574003 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,793
JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3574003|PMID:15673568) Ensembl
Ensembl
MGI
PMID:15673568 GO_REF:0000107 MGI:3574003 NCBI chr 8:124,536,648...125,035,841
Ensembl chr 8:124,536,648...124,841,530
JBrowse link
G CHRD chordin acts_upstream_of_or_within ISO (MGI:2662951|PMID:12810603) MGI PMID:12810603 MGI:2662951 NCBI chr13:122,266,632...122,277,513
Ensembl chr13:122,266,615...122,277,509
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3529734|PMID:15708565) MGI
Ensembl
PMID:15708565 GO_REF:0000107 MGI:3529734 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G DISP1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804)
(MGI:3051703|PMID:15269168)
MGI PMID:15269168 PMID:15755804 MGI:3051703 MGI:3577662 NCBI chr10:11,526,353...11,709,888
Ensembl chr10:11,526,619...11,709,888
JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5441704|PMID:21552265)
(MGI:3610248|PMID:16229832)
(MGI:3577662|PMID:15755804), (MGI:3588600|PMID:16061793)
Ensembl
MGI
Ensembl
PMID:15755804 PMID:16061793 PMID:16229832 PMID:21552265 GO_REF:0000107 MGI:3577662 MGI:3588600 MGI:3610248 MGI:5441704 NCBI chr 9:33,720,920...34,039,954
Ensembl chr 9:33,720,877...34,039,950
JBrowse link
G EDN1 endothelin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3043904|PMID:15110048) Ensembl
Ensembl
MGI
PMID:15110048 GO_REF:0000107 MGI:3043904 NCBI chr 7:8,752,018...8,758,354
Ensembl chr 7:8,751,695...8,758,348
JBrowse link
G EN1 engrailed homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1194987|PMID:9362463), (MGI:81767|PMID:8684466) Ensembl
Ensembl
MGI
PMID:8684466 PMID:9362463 GO_REF:0000107 MGI:1194987 MGI:81767 NCBI chr15:24,402,605...24,408,377
Ensembl chr15:24,402,605...24,407,798
JBrowse link
G FGF8 fibroblast growth factor 8 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,210...112,814,134
JBrowse link
G FKBP8 FKBP prolyl isomerase 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3039989|PMID:15105374) MGI
Ensembl
PMID:15105374 GO_REF:0000107 MGI:3039989 NCBI chr 2:59,256,546...59,267,171
Ensembl chr 2:59,252,073...59,267,165
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr17:29,997,397...30,001,704
Ensembl chr17:29,997,400...30,001,707
JBrowse link
G FOXG1 forkhead box G1 acts_upstream_of_or_within ISO (MGI:3581994|PMID:15893304)
(MGI:2679162|PMID:14566948)
MGI PMID:14566948 PMID:15893304 MGI:2679162 MGI:3581994 NCBI chr 7:70,656,603...70,660,236
Ensembl chr 7:70,658,685...70,660,145
JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3710452|PMID:17504940) MGI PMID:17504940 MGI:3710452 NCBI chr10:28,509,168...28,511,554 JBrowse link
G GLI1 GLI family zinc finger 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3617688|PMID:16342201) Ensembl
Ensembl
MGI
PMID:16342201 GO_REF:0000107 MGI:3617688 NCBI chr 5:22,736,325...22,747,421
Ensembl chr 5:22,732,516...22,747,421
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3617688|PMID:16342201) MGI
Ensembl
PMID:16342201 GO_REF:0000107 MGI:3617688 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2445272|PMID:12435629), (MGI:3624182|PMID:16571630)
(MGI:3028732|PMID:14723851)
InterPro
InterPro
Ensembl
MGI
PMID:12435629 PMID:14723851 PMID:16571630 GO_REF:0000002 GO_REF:0000107 MGI:2445272 MGI:3028732 MGI:3624182 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,071...52,697,903
JBrowse link
G HHIP hedgehog interacting protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3511726|PMID:15576403) Ensembl
Ensembl
MGI
PMID:15576403 GO_REF:0000107 MGI:3511726 NCBI chr 8:83,583,735...83,678,368
Ensembl chr 8:83,583,737...83,679,136
JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2135652|PMID:11493536) Ensembl
Ensembl
MGI
PMID:11493536 GO_REF:0000107 MGI:2135652 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,574...45,392,573
JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1335668|PMID:10230789) Ensembl
Ensembl
MGI
PMID:10230789 GO_REF:0000107 MGI:1335668 NCBI chr18:45,470,079...45,473,345
Ensembl chr18:45,470,419...45,473,347
JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1335668|PMID:10230789) Ensembl
Ensembl
MGI
PMID:10230789 GO_REF:0000107 MGI:1335668 NCBI chr12:24,796,786...24,800,499
Ensembl chr12:24,796,533...24,799,536
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:2135652|PMID:11493536) MGI PMID:11493536 MGI:2135652 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,910,281
JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (MGI:5441704|PMID:21552265)
(MGI:3577662|PMID:15755804)
MGI PMID:15755804 PMID:21552265 MGI:3577662 MGI:5441704 NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,705...68,902,062
JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2679893|PMID:14603322), (MGI:3577662|PMID:15755804), (MGI:5441704|PMID:21552265)
(MGI:3588600|PMID:16061793)
Ensembl
Ensembl
MGI
PMID:14603322 PMID:15755804 PMID:16061793 PMID:21552265 GO_REF:0000107 MGI:2679893 MGI:3577662 MGI:3588600 MGI:5441704 NCBI chr 3:111,683,674...111,718,504
Ensembl chr 3:111,683,669...111,718,971
JBrowse link
G IFT52 intraflagellar transport 52 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3579954|PMID:15930098) Ensembl
Ensembl
MGI
PMID:15930098 GO_REF:0000107 MGI:3579954 NCBI chr17:46,209,956...46,246,696
Ensembl chr17:46,202,359...46,247,298
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804), (MGI:3579954|PMID:15930098) MGI PMID:15755804 PMID:15930098 MGI:3577662 MGI:3579954 NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,022,953
JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr 2:134,932,339...135,069,408
Ensembl chr 2:134,932,615...135,069,351
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1344734|PMID:10498685) Ensembl
Ensembl
MGI
PMID:10498685 GO_REF:0000107 MGI:1344734 NCBI chr12:38,450,708...38,457,583
Ensembl chr12:38,450,708...38,456,139
JBrowse link
G LHX2 LIM homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1930361|PMID:11165475), (MGI:2679162|PMID:14566948) Ensembl
Ensembl
MGI
PMID:11165475 PMID:14566948 GO_REF:0000107 MGI:1930361 MGI:2679162 NCBI chr 1:264,900,931...264,920,888
Ensembl chr 1:264,900,591...264,920,913
JBrowse link
G LHX3 LIM homeobox 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3771226|PMID:18037398) MGI
Ensembl
PMID:18037398 GO_REF:0000107 MGI:3771226
G LMX1B LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:10767331) UniProt PMID:10767331 NCBI chr 1:267,207,273...267,290,862
Ensembl chr 1:267,207,561...267,291,145
JBrowse link
G LRP4 LDL receptor related protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3703100|PMID:17119023)
(MGI:3619629|PMID:16207730)
Ensembl
Ensembl
MGI
PMID:16207730 PMID:17119023 GO_REF:0000107 MGI:3619629 MGI:3703100 NCBI chr 2:15,616,137...15,672,876
Ensembl chr 2:15,616,131...15,672,874
JBrowse link
G NOG noggin involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2656991|PMID:12652306) MGI PMID:12652306 MGI:2656991 NCBI chr 1:186,028,575...186,039,026
Ensembl chr 1:186,028,575...186,038,229
JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618450|PMID:16423343) Ensembl
Ensembl
MGI
PMID:16423343 GO_REF:0000107 MGI:3618450 NCBI chr17:26,417,793...26,451,707
Ensembl chr17:26,417,795...26,451,928
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3512833|PMID:15548580)
(MGI:3581509|PMID:15878992)
MGI
Ensembl
PMID:15548580 PMID:15878992 GO_REF:0000107 MGI:3512833 MGI:3581509 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,971,567...29,001,200
JBrowse link
G PROP1 PROP paired-like homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3512715|PMID:15459176)
(MGI:2389279|PMID:12183375)
Ensembl
Ensembl
MGI
PMID:12183375 PMID:15459176 GO_REF:0000107 MGI:2389279 MGI:3512715 NCBI chr 2:79,627,466...79,631,270
Ensembl chr 2:79,627,603...79,631,270
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3511726|PMID:15576403) MGI
Ensembl
PMID:15576403 GO_REF:0000107 MGI:3511726 NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,325...26,703,225
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5441704|PMID:21552265)
(MGI:3051703|PMID:15269168)
MGI
Ensembl
PMID:15269168 PMID:21552265 GO_REF:0000107 MGI:3051703 MGI:5441704 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624182|PMID:16571630)
(MGI:3577662|PMID:15755804)
MGI
Ensembl
PMID:15755804 PMID:16571630 GO_REF:0000107 MGI:3577662 MGI:3624182 NCBI chr18:19,450,730...19,478,796
Ensembl chr18:19,450,734...19,479,374
JBrowse link
G SP8 Sp8 transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2679409|PMID:14597661) Ensembl
Ensembl
MGI
PMID:14597661 GO_REF:0000107 MGI:2679409 NCBI chr 9:89,764,671...89,767,428
Ensembl chr 9:89,764,764...89,767,425
JBrowse link
G TBX20 T-box transcription factor 20 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3579960|PMID:15901664) Ensembl
Ensembl
MGI
PMID:15901664 GO_REF:0000107 MGI:3579960 NCBI chr18:38,635,603...38,681,690
Ensembl chr18:38,635,617...38,677,208
JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (MGI:3697552|PMID:17082251) MGI PMID:17082251 MGI:3697552 NCBI chr 6:103,226,395...103,234,591
Ensembl chr 6:103,226,397...103,235,856
JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within ISO (MGI:1194987|PMID:9362463), (MGI:71658|PMID:7885472) MGI PMID:7885472 PMID:9362463 MGI:1194987 MGI:71658 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,455
JBrowse link
BMP signaling pathway involved in spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:122,266,632...122,277,513
Ensembl chr13:122,266,615...122,277,509
JBrowse link
determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CER1 cerberus 1, DAN family BMP antagonist involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:207,817,095...207,821,800
Ensembl chr 1:207,818,042...207,821,996
JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:136,617,041...136,629,293
Ensembl chr 1:136,617,069...136,629,292
JBrowse link
G GREM2 gremlin 2, DAN family BMP antagonist involved_in ISO (MGI:5507937|PMID:23063586) UniProt PMID:23063586 MGI:5507937 NCBI chr10:11,884,198...11,904,249
Ensembl chr10:11,885,280...11,885,780
JBrowse link
G NBL1 NBL1, DAN family BMP antagonist involved_in ISO (MGI:1203284|PMID:9660951) BHF-UCL PMID:9660951 MGI:1203284 NCBI chr 6:78,046,084...78,071,609
Ensembl chr 6:78,059,094...78,071,604
JBrowse link
determination of ventral identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIDA axin interactor, dorsalization associated involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr10:11,430,758...11,466,849
Ensembl chr10:11,428,396...11,466,645
JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1337175|PMID:10330403) MGI
Ensembl
Ensembl
PMID:10330403 GO_REF:0000107 MGI:1337175 NCBI chr 3:41,344,908...41,393,999
Ensembl chr 3:41,337,071...41,393,997
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2670493|PMID:12923052) Ensembl
Ensembl
MGI
PMID:12923052 GO_REF:0000107 MGI:2670493 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,793
JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2670493|PMID:12923052) Ensembl
Ensembl
MGI
PMID:12923052 GO_REF:0000107 MGI:2670493 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3823171|PMID:18985738) MGI PMID:18985738 MGI:3823171 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G MDFI MyoD family inhibitor involved_in ISO (MGI:4441142|PMID:11238923) UniProt PMID:11238923 MGI:4441142 NCBI chr 7:36,829,060...36,846,995
Ensembl chr 7:36,828,988...36,846,994
JBrowse link
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1350715|PMID:10588713) Ensembl
Ensembl
MGI
PMID:10588713 GO_REF:0000107 MGI:1350715 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,971,567...29,001,200
JBrowse link
G SENP2 SUMO specific peptidase 2 ISO RGD PMID:10944533 RGD:1299408 NCBI chr13:123,429,915...123,469,913
Ensembl chr13:123,429,995...123,471,929
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G VAX2 ventral anterior homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2157789|PMID:11830578)
(MGI:2157790|PMID:11830579)
Ensembl
Ensembl
MGI
PMID:11830578 PMID:11830579 GO_REF:0000107 MGI:2157789 MGI:2157790 NCBI chr 3:71,593,807...71,622,487
Ensembl chr 3:71,593,807...71,622,444
JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:17,627,291...17,681,197
Ensembl chr12:17,628,726...17,681,572
JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3046395|PMID:15218525) Ensembl
Ensembl
MGI
PMID:15218525 GO_REF:0000107 MGI:3046395 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
G FKBP8 FKBP prolyl isomerase 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3806189|PMID:18590716)
(MGI:3774974|PMID:18003640)
Ensembl
Ensembl
MGI
PMID:18003640 PMID:18590716 GO_REF:0000107 MGI:3774974 MGI:3806189 NCBI chr 2:59,256,546...59,267,171
Ensembl chr 2:59,252,073...59,267,165
JBrowse link
G FOXA1 forkhead box A1 acts_upstream_of_or_within ISO (MGI:5486225|PMID:23383217) MGI PMID:23383217 MGI:5486225 NCBI chr 7:62,471,233...62,479,638
Ensembl chr 7:62,471,228...62,479,223
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716)
(MGI:5486225|PMID:23383217)
(MGI:894511|PMID:9226455)
MGI PMID:9226455 PMID:18590716 PMID:23383217 MGI:3806189 MGI:5486225 MGI:894511 NCBI chr17:29,997,397...30,001,704
Ensembl chr17:29,997,400...30,001,707
JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940) MGI PMID:17504940 PMID:17504941 MGI:3710451 MGI:3710452 NCBI chr10:28,509,168...28,511,554 JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:894564|PMID:9247260)
(MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674)
MGI
Ensembl
PMID:9247260 PMID:18590716 PMID:19286674 GO_REF:0000107 MGI:3806189 MGI:3841503 MGI:894564 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GSC goosecoid homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:894511|PMID:9226455) Ensembl
Ensembl
MGI
PMID:9226455 GO_REF:0000107 MGI:894511 NCBI chr 7:116,099,053...116,101,153
Ensembl chr 7:116,099,047...116,100,966
JBrowse link
G KIF3A kinesin family member 3A involved_in
acts_upstream_of_or_within
ISO (MGI:4888042|PMID:21209331)
(MGI:3806189|PMID:18590716)
(MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674)
BHF-UCL
MGI
PMID:18590716 PMID:19286674 PMID:21209331 MGI:3806189 MGI:3841503 MGI:4888042 NCBI chr 2:134,932,339...135,069,408
Ensembl chr 2:134,932,615...135,069,351
JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr18:1,724,930...1,730,724
Ensembl chr18:1,725,244...1,730,170
JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr 6:77,160,827...77,268,626
Ensembl chr 6:77,161,097...77,267,415
JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1347695|PMID:10557208) Ensembl
Ensembl
MGI
PMID:10557208 GO_REF:0000107 MGI:1347695 NCBI chr 7:96,478,179...96,567,884
Ensembl chr 7:96,478,181...96,569,132
JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208) MGI PMID:10557208 MGI:1347695 NCBI chr10:14,532,556...14,561,862
Ensembl chr10:14,532,550...14,561,858
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1095757|PMID:9262482) MGI
Ensembl
PMID:9262482 GO_REF:0000107 MGI:1095757 NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,325...26,703,225
JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in ISO (MGI:69552|PMID:7720556) UniProt PMID:7720556 MGI:69552 NCBI chr 7:28,632,065...28,658,958
Ensembl chr 7:28,632,082...28,658,953
JBrowse link
G RNF220 ring finger protein 220 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6220747|PMID:30177510) Ensembl
Ensembl
MGI
PMID:30177510 GO_REF:0000107 MGI:6220747 NCBI chr 6:166,666,140...166,910,728
Ensembl chr 6:166,666,138...166,910,873
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3710451|PMID:17504941)
(MGI:3710017|PMID:17442700), (MGI:3806189|PMID:18590716)
Ensembl
Ensembl
MGI
PMID:17442700 PMID:17504941 PMID:18590716 GO_REF:0000107 MGI:3710017 MGI:3710451 MGI:3806189 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3806189|PMID:18590716) Ensembl
Ensembl
MGI
PMID:18590716 GO_REF:0000107 MGI:3806189 NCBI chr18:19,450,730...19,478,796
Ensembl chr18:19,450,734...19,479,374
JBrowse link
G TCTN1 tectonic family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3610767|PMID:16357211) Ensembl
Ensembl
MGI
PMID:16357211 GO_REF:0000107 MGI:3610767 NCBI chr14:31,953,996...32,010,202
Ensembl chr14:31,954,000...32,010,199
JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3841503|PMID:19286674) MGI
Ensembl
PMID:19286674 GO_REF:0000107 MGI:3841503 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,446...67,238,324
JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:64780|PMID:8299937) Ensembl
Ensembl
MGI
PMID:8299937 GO_REF:0000107 MGI:64780 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,154,086...51,202,176
JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624179|PMID:16613831) Ensembl
Ensembl
MGI
PMID:16613831 GO_REF:0000107 MGI:3624179 NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,210...112,814,134
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1352305|PMID:10625551) Ensembl
Ensembl
MGI
PMID:10625551 GO_REF:0000107 MGI:1352305 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,071...52,697,903
JBrowse link
G GSX2 GS homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1926244|PMID:11060228), (MGI:1928687|PMID:11124115), (MGI:3838261|PMID:18701439) Ensembl
Ensembl
MGI
PMID:11060228 PMID:11124115 PMID:18701439 GO_REF:0000107 MGI:1926244 MGI:1928687 MGI:3838261 NCBI chr 8:40,880,093...40,883,928
Ensembl chr 8:40,881,751...40,883,371
JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1339462|PMID:10393115), (MGI:1928567|PMID:11163262), (MGI:2157787|PMID:11830575) Ensembl
Ensembl
MGI
PMID:10393115 PMID:11163262 PMID:11830575 GO_REF:0000107 MGI:1339462 MGI:1928567 MGI:2157787 NCBI chr 7:63,487,200...63,491,580
Ensembl chr 7:63,487,807...63,491,575
JBrowse link
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928687|PMID:11124115)
(MGI:1913185|PMID:11050125), (MGI:3838261|PMID:18701439), (MGI:5662366|PMID:24528677)
Ensembl
Ensembl
MGI
PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 GO_REF:0000107 MGI:1913185 MGI:1928687 MGI:3838261 MGI:5662366 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,971,567...29,001,200
JBrowse link
G SIX3 SIX homeobox 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:95,521,330...95,527,004
Ensembl chr 3:95,521,333...95,525,436
JBrowse link
G TTC21B tetratricopeptide repeat domain 21B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4367927|PMID:19732765) Ensembl
Ensembl
MGI
PMID:19732765 GO_REF:0000107 MGI:4367927 NCBI chr15:72,430,250...72,512,503
Ensembl chr15:72,430,725...72,512,491
JBrowse link
negative regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDIT3 DNA damage inducible transcript 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:22,785,441...22,789,867
Ensembl chr 5:22,785,441...22,791,134
JBrowse link
G SOSTDC1 sclerostin domain containing 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:85,743,332...85,747,893
Ensembl chr 9:85,743,335...85,747,591
JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr14:15,582...24,102 JBrowse link
G GPR161 G protein-coupled receptor 161 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:82,844,944...82,909,329
Ensembl chr 4:82,844,957...83,016,417
JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5308523|PMID:22007132) Ensembl
Ensembl
MGI
PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr 2:65,074,876...65,095,564
Ensembl chr 2:65,074,870...65,095,553
JBrowse link
G PRKACB protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within ISO (MGI:5308523|PMID:22007132) MGI PMID:22007132 MGI:5308523 NCBI chr 6:129,520,397...129,636,207
Ensembl chr 6:129,519,962...129,635,517
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4355593|PMID:19684112) Ensembl
Ensembl
MGI
PMID:19684112 GO_REF:0000107 MGI:4355593 NCBI chr14:113,500,001...113,628,064
Ensembl chr14:113,500,842...113,614,517
JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chr15:137,863,612...137,912,325
Ensembl chr15:137,863,609...137,912,477
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3844764|PMID:19334287) Ensembl
Ensembl
MGI
PMID:19334287 GO_REF:0000107 MGI:3844764 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,446...67,238,324
JBrowse link
negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331) BHF-UCL PMID:21209331 MGI:4888042 NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,705...68,902,062
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3841503|PMID:19286674) Ensembl
Ensembl
MGI
PMID:19286674 GO_REF:0000107 MGI:3841503 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,446...67,238,324
JBrowse link
negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 ISO RGD PMID:9566905 RGD:68736 NCBI chr12:12,311,293...12,343,207
Ensembl chr12:12,311,293...12,343,200
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
positive regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:64,749,478...64,891,653
Ensembl chr15:64,748,761...64,892,153
JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3797993|PMID:18316368) Ensembl
Ensembl
MGI
PMID:18316368 GO_REF:0000107 MGI:3797993 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G MAPK8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (MGI:3797993|PMID:18316368) MGI PMID:18316368 MGI:3797993 NCBI chr14:88,988,914...89,108,875
Ensembl chr14:88,988,949...89,172,200
JBrowse link
positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GORAB golgin, RAB6 interacting acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5766823|PMID:26967474) MGI
Ensembl
Ensembl
PMID:26967474 GO_REF:0000107 MGI:5766823 NCBI chr 4:80,568,535...80,590,709
Ensembl chr 4:80,567,797...80,590,680
JBrowse link
regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr14:15,582...24,102 JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5912686|PMID:28817564) Ensembl
Ensembl
MGI
PMID:28817564 GO_REF:0000107 MGI:5912686 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5912686|PMID:28817564) Ensembl
Ensembl
MGI
PMID:28817564 GO_REF:0000107 MGI:5912686 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,071...52,697,903
JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4868517|PMID:21045211) Ensembl
Ensembl
MGI
PMID:21045211 GO_REF:0000107 MGI:4868517 NCBI chr12:34,499,139...34,512,191
Ensembl chr12:34,499,141...34,512,187
JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4439200|PMID:20159594)
(MGI:3709667|PMID:17395647)
Ensembl
Ensembl
MGI
PMID:17395647 PMID:20159594 GO_REF:0000107 MGI:3709667 MGI:4439200 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709667|PMID:17395647)
(MGI:4439200|PMID:20159594)
Ensembl
Ensembl
MGI
PMID:17395647 PMID:20159594 GO_REF:0000107 MGI:3709667 MGI:4439200 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,071...52,697,903
JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (MGI:5428054|PMID:22689656) MGI PMID:22689656 MGI:5428054 NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,705...68,902,062
JBrowse link
G PTCH1 patched 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4355593|PMID:19684112) Ensembl
Ensembl
MGI
PMID:19684112 GO_REF:0000107 MGI:4355593 NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,325...26,703,225
JBrowse link
G TBC1D32 TBC1 domain family member 32 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4439200|PMID:20159594) Ensembl
Ensembl
MGI
PMID:20159594 GO_REF:0000107 MGI:4439200 NCBI chr 1:41,057,782...41,265,416
Ensembl chr 1:41,057,838...41,265,375
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3841513|PMID:19223390) Ensembl
Ensembl
MGI
PMID:19223390 GO_REF:0000107 MGI:3841513 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,446...67,238,324
JBrowse link
G WDR19 WD repeat domain 19 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5428054|PMID:22689656) Ensembl
Ensembl
MGI
PMID:22689656 GO_REF:0000107 MGI:5428054 NCBI chr 8:30,453,969...30,553,699
Ensembl chr 8:30,463,862...30,553,703
JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3051712|PMID:15215207) Ensembl
Ensembl
MGI
PMID:15215207 GO_REF:0000107 MGI:3051712 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3051712|PMID:15215207) Ensembl
Ensembl
MGI
PMID:15215207 GO_REF:0000107 MGI:3051712 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,071...52,697,903
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4355593|PMID:19684112) Ensembl
Ensembl
MGI
PMID:19684112 GO_REF:0000107 MGI:4355593 NCBI chr14:113,500,001...113,628,064
Ensembl chr14:113,500,842...113,614,517
JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3051712|PMID:15215207) Ensembl
Ensembl
MGI
PMID:15215207 GO_REF:0000107 MGI:3051712 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3051712|PMID:15215207) Ensembl
Ensembl
MGI
PMID:15215207 GO_REF:0000107 MGI:3051712 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,071...52,697,903
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4355593|PMID:19684112) Ensembl
Ensembl
MGI
PMID:19684112 GO_REF:0000107 MGI:4355593 NCBI chr14:113,500,001...113,628,064
Ensembl chr14:113,500,842...113,614,517
JBrowse link
smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3841503|PMID:19286674) Ensembl
Ensembl
MGI
PMID:19286674 GO_REF:0000107 MGI:3841503 NCBI chr18:19,450,730...19,478,796
Ensembl chr18:19,450,734...19,479,374
JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:5052192|PMID:21761479) MGI PMID:21761479 MGI:5052192 NCBI chr 6:54,823,680...54,830,425
Ensembl chr 6:54,823,666...54,829,508
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154468|PMID:11748151)
(MGI:3051712|PMID:15215207)
(MGI:3612806|PMID:16364285)
MGI
Ensembl
PMID:11748151 PMID:15215207 PMID:16364285 GO_REF:0000107 MGI:2154468 MGI:3051712 MGI:3612806 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3051712|PMID:15215207)
(MGI:3612806|PMID:16364285)
MGI
Ensembl
PMID:15215207 PMID:16364285 GO_REF:0000107 MGI:3051712 MGI:3612806 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,071...52,697,903
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:5052192|PMID:21761479) MGI PMID:21761479 MGI:5052192 NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,022,953
JBrowse link
G INTU inturned planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5052192|PMID:21761479) Ensembl
Ensembl
MGI
PMID:21761479 GO_REF:0000107 MGI:5052192 NCBI chr 8:97,123,062...97,204,659
Ensembl chr 8:97,123,065...97,204,650
JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (MGI:3612806|PMID:16364285)
(MGI:2679893|PMID:14603322)
(MGI:3577662|PMID:15755804), (MGI:3612806|PMID:16364285)
MGI PMID:14603322 PMID:15755804 PMID:16364285 MGI:2679893 MGI:3577662 MGI:3612806 NCBI chr 7:28,632,065...28,658,958
Ensembl chr 7:28,632,082...28,658,953
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
PMID:9230312
(MGI:2154468|PMID:11748151)
Ensembl
Ensembl
MGI
PMID:9230312 PMID:11748151 GO_REF:0000107 MGI:2154468 RGD:8553789 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3616741|PMID:16459298) MGI
Ensembl
PMID:16459298 GO_REF:0000107 MGI:3616741 NCBI chr14:113,500,001...113,628,064
Ensembl chr14:113,500,842...113,614,517
JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in ISO (MGI:3587461|PMID:16020526) UniProt PMID:16020526 MGI:3587461 NCBI chr 5:81,357,431...81,360,335 JBrowse link
G DLL4 delta like canonical Notch ligand 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:130,376,720...130,386,411
Ensembl chr 1:130,376,720...130,386,713
JBrowse link
G FOXN4 forkhead box N4 involved_in ISO (MGI:3587461|PMID:16020526), (MGI:3765356|PMID:17728344) UniProt PMID:16020526 PMID:17728344 MGI:3587461 MGI:3765356 NCBI chr14:41,589,128...41,614,488 JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1334824|PMID:10217145) Ensembl
Ensembl
MGI
PMID:10217145 GO_REF:0000107 MGI:1334824 NCBI chr17:29,275,656...29,279,572
Ensembl chr17:29,275,682...29,278,606
JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBX1 developing brain homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2136554|PMID:11239429) Ensembl
Ensembl
MGI
PMID:11239429 GO_REF:0000107 MGI:2136554 NCBI chr 2:39,229,392...39,234,304
Ensembl chr 2:39,229,356...39,234,969
JBrowse link
G DMRT3 doublesex and mab-3 related transcription factor 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5435948|PMID:22932389) Ensembl
Ensembl
MGI
PMID:22932389 GO_REF:0000107 MGI:5435948 NCBI chr 1:220,819,525...220,834,080
Ensembl chr 1:220,820,556...220,833,835
JBrowse link
G LHX3 LIM homeobox 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4356383|PMID:19666821) Ensembl
Ensembl
MGI
PMID:19666821 GO_REF:0000107 MGI:4356383
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
G SOX1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:4834949|PMID:20844123) MGI PMID:20844123 MGI:4834949 NCBI chr11:77,985,771...77,989,383 JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMAD2 SMAD family member 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:97,415,360...97,511,388
Ensembl chr 1:97,415,716...97,511,358
JBrowse link
G SMAD6 SMAD family member 6 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:164,652,602...164,735,084
Ensembl chr 1:164,657,086...164,735,083
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16975
    multicellular organismal process 8334
      pattern specification process 480
        regionalization 379
          dorsal/ventral pattern formation 99
            determination of dorsal identity + 9
            determination of dorsal/ventral asymmetry + 10
            determination of ventral identity 1
            dorsal/ventral axis specification + 13
            dorsal/ventral neural tube patterning + 32
            dorsal/ventral pattern formation, imaginal disc + 0
            embryonic heart tube dorsal/ventral pattern formation 0
            forebrain dorsal/ventral pattern formation 7
            spinal cord dorsal/ventral patterning + 20
Path 2
Term Annotations click to browse term
  biological_process 16975
    developmental process 6444
      anatomical structure development 5956
        multicellular organism development 5419
          pattern specification process 480
            regionalization 379
              dorsal/ventral pattern formation 99
                determination of dorsal identity + 9
                determination of dorsal/ventral asymmetry + 10
                determination of ventral identity 1
                dorsal/ventral axis specification + 13
                dorsal/ventral neural tube patterning + 32
                dorsal/ventral pattern formation, imaginal disc + 0
                embryonic heart tube dorsal/ventral pattern formation 0
                forebrain dorsal/ventral pattern formation 7
                spinal cord dorsal/ventral patterning + 20
paths to the root