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ONTOLOGY REPORT - ANNOTATIONS


Term:dorsal/ventral pattern formation
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Accession:GO:0009953 term browser browse the term
Definition:The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
Synonyms:exact_synonym: dorsoventral pattern formation
 narrow_synonym: dorsal/ventral pattern specification



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dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:58,446,438...58,566,828
Ensembl chr 2:58,388,644...58,567,157
JBrowse link
G Acvrl1 activin A receptor, type II-like 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:101,128,522...101,145,336
Ensembl chr15:101,128,522...101,145,336
JBrowse link
G Aida axin interactor, dorsalization associated acts_upstream_of_or_within ISO (MGI:3799599|PMID:17681137) MGI PMID:17681137 MGI:3799599 NCBI chr 1:183,297,060...183,324,501
Ensembl chr 1:183,296,590...183,325,476
JBrowse link
G Apc APC, WNT signaling pathway regulator acts_upstream_of_or_within IMP (MGI:2449253|PMID:12645927) MGI PMID:12645927 MGI:2449253 NCBI chr18:34,220,297...34,322,190
Ensembl chr18:34,220,924...34,322,552
JBrowse link
G Arl13b ADP-ribosylation factor-like 13B acts_upstream_of_or_within IMP (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr16:62,793,308...62,847,055
Ensembl chr16:62,793,685...62,847,040
JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within IMP
ISO
(MGI:3797993|PMID:18316368)
(MGI:3799599|PMID:17681137)
MGI PMID:17681137 PMID:18316368 MGI:3797993 MGI:3799599 NCBI chr17:26,131,217...26,195,811
Ensembl chr17:26,138,688...26,195,811
JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A involved_in
acts_upstream_of_or_within
IBA
IGI
(MGI:6201960|PMID:21873635)
(MGI:3574003|PMID:15673568)
GO_Central
MGI
PMID:15673568 PMID:21873635 MGI:3574003 MGI:6201960 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
G Bmpr1b bone morphogenetic protein receptor, type 1B involved_in
acts_upstream_of_or_within
IBA
IGI
(MGI:6201960|PMID:21873635)
(MGI:3574003|PMID:15673568)
GO_Central
MGI
PMID:15673568 PMID:21873635 MGI:3574003 MGI:6201960 NCBI chr 3:141,837,135...142,169,585
Ensembl chr 3:141,837,136...142,169,425
JBrowse link
G Chrd chordin acts_upstream_of_or_within IMP (MGI:2662951|PMID:12810603) MGI PMID:12810603 MGI:2662951 NCBI chr16:20,731,425...20,742,384
Ensembl chr16:20,733,127...20,742,384
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 acts_upstream_of_or_within IMP (MGI:3529734|PMID:15708565) MGI PMID:15708565 MGI:3529734 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within IGI
IMP
(MGI:3051703|PMID:15269168)
(MGI:3577662|PMID:15755804)
MGI PMID:15269168 PMID:15755804 MGI:3051703 MGI:3577662 NCBI chr 1:183,086,264...183,221,537
Ensembl chr 1:183,086,266...183,221,522
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within IMP
IGI
(MGI:3577662|PMID:15755804), (MGI:3588600|PMID:16061793)
(MGI:5441704|PMID:21552265)
(MGI:3610248|PMID:16229832)
MGI PMID:15755804 PMID:16061793 PMID:16229832 PMID:21552265 MGI:3577662 MGI:3588600 MGI:3610248 MGI:5441704 NCBI chr 9:6,928,550...7,178,306
Ensembl chr 9:6,928,503...7,184,446
JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within IMP (MGI:3043904|PMID:15110048) MGI PMID:15110048 MGI:3043904 NCBI chr13:42,301,476...42,307,990
Ensembl chr13:42,301,476...42,307,990
JBrowse link
G En1 engrailed 1 acts_upstream_of_or_within IMP (MGI:1194987|PMID:9362463), (MGI:81767|PMID:8684466) MGI PMID:8684466 PMID:9362463 MGI:1194987 MGI:81767 NCBI chr 1:120,602,487...120,607,991
Ensembl chr 1:120,602,418...120,607,992
JBrowse link
G Fgf8 fibroblast growth factor 8 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:45,736,491...45,742,941
Ensembl chr19:45,736,798...45,742,915
JBrowse link
G Fkbp8 FK506 binding protein 8 acts_upstream_of_or_within IMP (MGI:3039989|PMID:15105374) MGI PMID:15105374 MGI:3039989 NCBI chr 8:70,527,721...70,535,328
Ensembl chr 8:70,527,724...70,535,328
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within IGI (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr 2:148,042,877...148,046,969
Ensembl chr 2:148,042,877...148,046,969
JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within IMP (MGI:2679162|PMID:14566948)
(MGI:3581994|PMID:15893304)
MGI PMID:14566948 PMID:15893304 MGI:2679162 MGI:3581994 NCBI chr12:49,382,883...49,386,867
Ensembl chr12:49,382,660...49,386,861
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within IMP (MGI:3710452|PMID:17504940) MGI PMID:17504940 MGI:3710452 NCBI chr13:60,174,405...60,177,535
Ensembl chr13:60,174,405...60,177,365
JBrowse link
G Gli1 GLI-Kruppel family member GLI1 acts_upstream_of_or_within IGI (MGI:3617688|PMID:16342201) MGI PMID:16342201 MGI:3617688 NCBI chr10:127,329,882...127,341,579
Ensembl chr10:127,329,882...127,341,974
JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IGI (MGI:3617688|PMID:16342201) MGI PMID:16342201 MGI:3617688 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (MGI:3028732|PMID:14723851)
(MGI:2445272|PMID:12435629), (MGI:3624182|PMID:16571630)
MGI PMID:12435629 PMID:14723851 PMID:16571630 MGI:2445272 MGI:3028732 MGI:3624182 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Hhip Hedgehog-interacting protein acts_upstream_of_or_within IGI (MGI:3511726|PMID:15576403) MGI PMID:15576403 MGI:3511726 NCBI chr 8:79,965,850...80,058,060
Ensembl chr 8:79,965,851...80,058,006
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within IGI (MGI:2135652|PMID:11493536) MGI PMID:11493536 MGI:2135652 NCBI chr 6:52,242,105...52,245,810
Ensembl chr 6:52,242,106...52,245,810
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within IMP
IGI
(MGI:1335668|PMID:10230789) MGI PMID:10230789 MGI:1335668 NCBI chr 6:52,162,417...52,164,831
Ensembl chr 6:52,162,417...52,164,831
JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within IGI (MGI:1335668|PMID:10230789) MGI PMID:10230789 MGI:1335668 NCBI chr11:96,351,632...96,354,020
Ensembl chr11:96,350,525...96,354,012
JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within IGI (MGI:2135652|PMID:11493536) MGI PMID:11493536 MGI:2135652 NCBI chr 2:74,679,558...74,687,016
Ensembl chr 2:74,679,557...74,687,016
JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within IMP
IGI
(MGI:3577662|PMID:15755804)
(MGI:5441704|PMID:21552265)
MGI PMID:15755804 PMID:21552265 MGI:3577662 MGI:5441704 NCBI chr 6:115,853,379...115,926,699
Ensembl chr 6:115,853,470...115,926,699
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within IGI
IMP
(MGI:3588600|PMID:16061793)
(MGI:2679893|PMID:14603322), (MGI:3577662|PMID:15755804), (MGI:5441704|PMID:21552265)
MGI PMID:14603322 PMID:15755804 PMID:16061793 PMID:21552265 MGI:2679893 MGI:3577662 MGI:3588600 MGI:5441704 NCBI chr 5:31,253,279...31,291,391
Ensembl chr 5:31,253,277...31,291,116
JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within IMP (MGI:3579954|PMID:15930098) MGI PMID:15930098 MGI:3579954 NCBI chr 2:163,017,117...163,046,155
Ensembl chr 2:163,017,354...163,046,141
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within IMP (MGI:3577662|PMID:15755804), (MGI:3579954|PMID:15930098) MGI PMID:15755804 PMID:15930098 MGI:3577662 MGI:3579954 NCBI chr14:57,424,064...57,517,936
Ensembl chr14:57,424,062...57,517,936
JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within IMP (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr11:53,565,701...53,604,248
Ensembl chr11:53,567,379...53,601,967
JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IGI (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Lhx2 LIM homeobox protein 2 acts_upstream_of_or_within IMP (MGI:1930361|PMID:11165475), (MGI:2679162|PMID:14566948) MGI PMID:11165475 PMID:14566948 MGI:1930361 MGI:2679162 NCBI chr 2:38,339,271...38,369,737
Ensembl chr 2:38,339,281...38,369,733
JBrowse link
G Lhx3 LIM homeobox protein 3 acts_upstream_of_or_within IMP (MGI:3771226|PMID:18037398) MGI PMID:18037398 MGI:3771226 NCBI chr 2:26,200,212...26,208,249
Ensembl chr 2:26,200,212...26,208,289
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within IEP (PMID:10767331) UniProt PMID:10767331 NCBI chr 2:33,560,965...33,641,208
Ensembl chr 2:33,560,965...33,640,511
Ensembl chr 2:33,560,965...33,640,511
JBrowse link
G Lrp4 low density lipoprotein receptor-related protein 4 acts_upstream_of_or_within IMP (MGI:3703100|PMID:17119023)
(MGI:3619629|PMID:16207730)
MGI PMID:16207730 PMID:17119023 MGI:3619629 MGI:3703100 NCBI chr 2:91,457,456...91,513,901
Ensembl chr 2:91,457,511...91,513,779
JBrowse link
G Nog noggin involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr11:89,300,638...89,302,559
Ensembl chr11:89,300,638...89,302,332
JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within IMP (MGI:64560|PMID:8155581) MGI PMID:8155581 MGI:64560 NCBI chr 6:85,423,886...85,428,877
Ensembl chr 6:85,423,886...85,428,877
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within IMP (MGI:2656991|PMID:12652306) MGI PMID:12652306 MGI:2656991 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within IMP (MGI:3618450|PMID:16423343) MGI PMID:16423343 MGI:3618450 NCBI chr 2:144,305,175...144,332,080
Ensembl chr 2:144,305,175...144,332,146
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IMP (MGI:3512833|PMID:15548580)
(MGI:3581509|PMID:15878992)
MGI PMID:15548580 PMID:15878992 MGI:3512833 MGI:3581509 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Prop1 paired like homeodomain factor 1 acts_upstream_of_or_within IMP (MGI:2389279|PMID:12183375)
(MGI:3512715|PMID:15459176)
MGI PMID:12183375 PMID:15459176 MGI:2389279 MGI:3512715 NCBI chr11:50,950,806...50,953,757
Ensembl chr11:50,950,806...50,953,765
JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within IGI (MGI:3511726|PMID:15576403) MGI PMID:15576403 MGI:3511726 NCBI chr13:63,508,328...63,573,460
Ensembl chr13:63,508,328...63,573,598
JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IGI (MGI:3051703|PMID:15269168)
(MGI:5441704|PMID:21552265)
MGI PMID:15269168 PMID:21552265 MGI:3051703 MGI:5441704 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IMP (MGI:3577662|PMID:15755804)
(MGI:3624182|PMID:16571630)
MGI PMID:15755804 PMID:16571630 MGI:3577662 MGI:3624182 NCBI chr 6:29,735,497...29,761,366
Ensembl chr 6:29,735,503...29,761,365
JBrowse link
G Sp8 trans-acting transcription factor 8 acts_upstream_of_or_within IMP (MGI:2679409|PMID:14597661) MGI PMID:14597661 MGI:2679409 NCBI chr12:118,846,288...118,852,578
Ensembl chr12:118,846,329...118,852,576
JBrowse link
G Tbx20 T-box 20 acts_upstream_of_or_within IMP (MGI:3579960|PMID:15901664) MGI PMID:15901664 MGI:3579960 NCBI chr 9:24,720,812...24,774,303
Ensembl chr 9:24,718,138...24,774,303
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within IMP (MGI:3697552|PMID:17082251) MGI PMID:17082251 MGI:3697552 NCBI chr17:70,844,205...70,853,532
Ensembl chr17:70,844,205...70,853,546
JBrowse link
G Wnt7a wingless-type MMTV integration site family, member 7A acts_upstream_of_or_within IMP (MGI:1194987|PMID:9362463), (MGI:71658|PMID:7885472) MGI PMID:7885472 PMID:9362463 MGI:1194987 MGI:71658 NCBI chr 6:91,363,981...91,411,353
Ensembl chr 6:91,363,981...91,411,363
JBrowse link
BMP signaling pathway involved in spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:20,731,425...20,742,384
Ensembl chr16:20,733,127...20,742,384
JBrowse link
determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:82,881,751...82,885,151
Ensembl chr 4:82,881,751...82,885,148
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:113,748,675...113,758,648
Ensembl chr 2:113,746,164...113,758,646
JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist involved_in IMP (MGI:5507937|PMID:23063586) UniProt PMID:23063586 MGI:5507937 NCBI chr 1:174,833,785...174,921,911
Ensembl chr 1:174,833,785...174,921,819
JBrowse link
G Map3k4 mitogen-activated protein kinase kinase kinase 4 acts_upstream_of_or_within ISO (MGI:3799599|PMID:17681137) MGI PMID:17681137 MGI:3799599 NCBI chr17:12,227,621...12,318,796
Ensembl chr17:12,227,621...12,318,796
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (MGI:3799599|PMID:17681137) MGI PMID:17681137 MGI:3799599 NCBI chr14:33,377,898...33,447,353
Ensembl chr14:33,377,898...33,447,158
JBrowse link
G Nbl1 NBL1, DAN family BMP antagonist involved_in IMP (MGI:1203284|PMID:9660951) BHF-UCL PMID:9660951 MGI:1203284 NCBI chr 4:139,082,291...139,093,126
Ensembl chr 4:139,082,284...139,092,993
JBrowse link
determination of ventral identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aida axin interactor, dorsalization associated involved_in
acts_upstream_of_or_within
IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:3799599|PMID:17681137)
GO_Central
MGI
PMID:17681137 PMID:21873635 MGI:3799599 MGI:6201960 NCBI chr 1:183,297,060...183,324,501
Ensembl chr 1:183,296,590...183,325,476
JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within IDA
ISO
(MGI:1337175|PMID:10330403)
(MGI:3799599|PMID:17681137)
MGI PMID:10330403 PMID:17681137 MGI:1337175 MGI:3799599 NCBI chr17:26,131,217...26,195,811
Ensembl chr17:26,138,688...26,195,811
JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IMP (MGI:2670493|PMID:12923052) MGI PMID:12923052 MGI:2670493 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 acts_upstream_of_or_within IMP (MGI:2670493|PMID:12923052) MGI PMID:12923052 MGI:2670493 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (MGI:3823171|PMID:18985738) MGI PMID:18985738 MGI:3823171 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Mdfi MyoD family inhibitor involved_in IMP (MGI:4441142|PMID:11238923) UniProt PMID:11238923 MGI:4441142 NCBI chr17:47,815,328...47,834,691
Ensembl chr17:47,815,328...47,834,691
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IMP (MGI:1350715|PMID:10588713) MGI PMID:10588713 MGI:1350715 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Senp2 SUMO/sentrin specific peptidase 2 involved_in ISO RGD
MGI
PMID:10944533 GO_REF:0000096 MGI:4417868 RGD:1299408 NCBI chr16:22,009,432...22,049,269
Ensembl chr16:22,009,484...22,049,269
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within IMP (MGI:2157790|PMID:11830579)
(MGI:2157789|PMID:11830578)
MGI PMID:11830578 PMID:11830579 MGI:2157789 MGI:2157790 NCBI chr 6:83,711,239...83,738,313
Ensembl chr 6:83,711,264...83,738,313
JBrowse link
G Wnt3 wingless-type MMTV integration site family, member 3 acts_upstream_of_or_within IMP (MGI:2450015|PMID:12569130) MGI PMID:12569130 MGI:2450015 NCBI chr11:103,774,175...103,818,021
Ensembl chr11:103,774,150...103,817,957
JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IDA (MGI:3046395|PMID:15218525) MGI PMID:15218525 MGI:3046395 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Fkbp8 FK506 binding protein 8 acts_upstream_of_or_within IMP
IGI
IDA
(MGI:3806189|PMID:18590716)
(MGI:3774974|PMID:18003640)
MGI PMID:18003640 PMID:18590716 MGI:3774974 MGI:3806189 NCBI chr 8:70,527,721...70,535,328
Ensembl chr 8:70,527,724...70,535,328
JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within IGI (MGI:5486225|PMID:23383217) MGI PMID:23383217 MGI:5486225 NCBI chr12:57,540,628...57,548,029
Ensembl chr12:57,540,628...57,546,916
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within IGI
IDA
(MGI:894511|PMID:9226455)
(MGI:5486225|PMID:23383217)
(MGI:3806189|PMID:18590716)
MGI PMID:9226455 PMID:18590716 PMID:23383217 MGI:3806189 MGI:5486225 MGI:894511 NCBI chr 2:148,042,877...148,046,969
Ensembl chr 2:148,042,877...148,046,969
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within IMP
IGI
(MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940) MGI PMID:17504940 PMID:17504941 MGI:3710451 MGI:3710452 NCBI chr13:60,174,405...60,177,535
Ensembl chr13:60,174,405...60,177,365
JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IMP
IDA
(MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674)
(MGI:894564|PMID:9247260)
MGI PMID:9247260 PMID:18590716 PMID:19286674 MGI:3806189 MGI:3841503 MGI:894564 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within IGI (MGI:894511|PMID:9226455) MGI PMID:9226455 MGI:894511 NCBI chr12:104,471,209...104,473,236
Ensembl chr12:104,471,209...104,473,330
JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within
involved_in
IGI
IMP
(MGI:3806189|PMID:18590716)
(MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674)
(MGI:4888042|PMID:21209331)
MGI
BHF-UCL
PMID:18590716 PMID:19286674 PMID:21209331 MGI:3806189 MGI:3841503 MGI:4888042 NCBI chr11:53,565,701...53,604,248
Ensembl chr11:53,567,379...53,601,967
JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within IDA (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr 5:29,473,823...29,478,470
Ensembl chr 5:29,473,034...29,478,470
JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within IDA (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr 4:139,737,059...139,833,530
Ensembl chr 4:139,737,062...139,833,528
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within IGI (MGI:1347695|PMID:10557208) MGI PMID:10557208 MGI:1347695 NCBI chr12:83,688,152...83,735,095
Ensembl chr12:83,688,152...83,735,199
JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within IGI (MGI:1347695|PMID:10557208) MGI PMID:10557208 MGI:1347695 NCBI chr 1:180,227,004...180,263,467
Ensembl chr 1:180,227,004...180,263,438
JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within IMP (MGI:1095757|PMID:9262482) MGI PMID:9262482 MGI:1095757 NCBI chr13:63,508,328...63,573,460
Ensembl chr13:63,508,328...63,573,598
JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in IMP (MGI:69552|PMID:7720556) UniProt PMID:7720556 MGI:69552 NCBI chr 1:33,719,896...33,742,564
Ensembl chr 1:33,719,887...33,742,564
JBrowse link
G Rnf220 ring finger protein 220 acts_upstream_of_or_within IMP (MGI:6220747|PMID:30177510) MGI PMID:30177510 MGI:6220747 NCBI chr 4:117,271,463...117,497,052
Ensembl chr 4:117,271,463...117,497,052
JBrowse link
G Shh sonic hedgehog involved_in
acts_upstream_of_or_within
IMP
IGI
IDA
(MGI:4888042|PMID:21209331)
(MGI:3710451|PMID:17504941)
(MGI:3710017|PMID:17442700), (MGI:3806189|PMID:18590716)
BHF-UCL
MGI
PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 MGI:3710017 MGI:3710451 MGI:3806189 MGI:4888042 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IMP (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr 6:29,735,497...29,761,366
Ensembl chr 6:29,735,503...29,761,365
JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within IMP (MGI:3610767|PMID:16357211) MGI PMID:16357211 MGI:3610767 NCBI chr 5:122,239,495...122,264,489
Ensembl chr 5:122,237,848...122,264,460
JBrowse link
G Tulp3 tubby-like protein 3 acts_upstream_of_or_within IMP (MGI:3841503|PMID:19286674) MGI PMID:19286674 MGI:3841503 NCBI chr 6:128,321,140...128,355,873
Ensembl chr 6:128,321,161...128,355,851
JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A acts_upstream_of_or_within IMP (MGI:64780|PMID:8299937) MGI PMID:8299937 MGI:64780 NCBI chr11:59,248,036...59,290,751
Ensembl chr11:59,248,033...59,290,752
JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IMP (MGI:3624179|PMID:16613831) MGI PMID:16613831 MGI:3624179 NCBI chr19:45,736,491...45,742,941
Ensembl chr19:45,736,798...45,742,915
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (MGI:1352305|PMID:10625551) MGI PMID:10625551 MGI:1352305 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within IMP (MGI:1926244|PMID:11060228), (MGI:1928687|PMID:11124115), (MGI:3838261|PMID:18701439) MGI PMID:11060228 PMID:11124115 PMID:18701439 MGI:1926244 MGI:1928687 MGI:3838261 NCBI chr 5:75,075,601...75,077,893
Ensembl chr 5:75,075,601...75,077,893
JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within IMP (MGI:1339462|PMID:10393115), (MGI:1928567|PMID:11163262), (MGI:2157787|PMID:11830575) MGI PMID:10393115 PMID:11163262 PMID:11830575 MGI:1339462 MGI:1928567 MGI:2157787 NCBI chr12:56,531,935...56,536,908
Ensembl chr12:56,531,958...56,536,908
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IMP (MGI:1928687|PMID:11124115)
(MGI:1913185|PMID:11050125), (MGI:3838261|PMID:18701439), (MGI:5662366|PMID:24528677)
MGI PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 MGI:1913185 MGI:1928687 MGI:3838261 MGI:5662366 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Six3 sine oculis-related homeobox 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:85,613,608...85,626,191
Ensembl chr17:85,613,608...85,629,302
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within IMP (MGI:4367927|PMID:19732765) MGI PMID:19732765 MGI:4367927 NCBI chr 2:66,183,787...66,256,674
Ensembl chr 2:66,184,327...66,256,617
JBrowse link
negative regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aida axin interactor, dorsalization associated acts_upstream_of_or_within ISO (MGI:3799599|PMID:17681137) MGI PMID:17681137 MGI:3799599 NCBI chr 1:183,297,060...183,324,501
Ensembl chr 1:183,296,590...183,325,476
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 involved_in ISO
IDA
(MGI:4821075|PMID:16434966) MGI
BHF-UCL
PMID:16434966 GO_REF:0000096 MGI:4821075 MGI:4834177 NCBI chr10:127,290,793...127,296,291
Ensembl chr10:127,290,774...127,296,288
Ensembl chr10:127,290,774...127,296,288
JBrowse link
G Sostdc1 sclerostin domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:36,314,169...36,318,452
Ensembl chr12:36,314,139...36,318,452
JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within IGI (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr13:64,432,319...64,439,722
Ensembl chr13:64,432,314...64,441,773
JBrowse link
G Gpr161 G protein-coupled receptor 161 involved_in IMP (MGI:5468365|PMID:23332756) UniProt PMID:23332756 MGI:5468365 NCBI chr 1:165,281,184...165,326,747
Ensembl chr 1:165,295,789...165,326,745
JBrowse link
G Prkaca protein kinase, cAMP dependent, catalytic, alpha acts_upstream_of_or_within IGI (MGI:5308523|PMID:22007132) MGI PMID:22007132 MGI:5308523 NCBI chr 8:83,972,978...83,996,444
Ensembl chr 8:83,972,993...83,996,443
JBrowse link
G Prkacb protein kinase, cAMP dependent, catalytic, beta acts_upstream_of_or_within IGI (MGI:5308523|PMID:22007132) MGI PMID:22007132 MGI:5308523 NCBI chr 3:146,729,579...146,812,946
Ensembl chr 3:146,729,574...146,812,990
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IMP (MGI:4355593|PMID:19684112) MGI PMID:19684112 MGI:4355593 NCBI chr19:46,396,896...46,488,804
Ensembl chr19:46,396,896...46,488,804
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within IMP (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chr 1:91,494,590...91,529,307
Ensembl chr 1:91,494,647...91,529,307
JBrowse link
G Tulp3 tubby-like protein 3 acts_upstream_of_or_within IMP (MGI:3844764|PMID:19334287) MGI PMID:19334287 MGI:3844764 NCBI chr 6:128,321,140...128,355,873
Ensembl chr 6:128,321,161...128,355,851
JBrowse link
negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift122 intraflagellar transport 122 involved_in IMP (MGI:4888042|PMID:21209331) BHF-UCL PMID:21209331 MGI:4888042 NCBI chr 6:115,853,379...115,926,699
Ensembl chr 6:115,853,470...115,926,699
JBrowse link
G Rfx4 regulatory factor X, 4 (influences HLA class II expression) acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:5430880|PMID:19887680)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:19887680 PMID:21873635 MGI:5430880 MGI:6201960 NCBI chr10:84,756,036...84,906,538
Ensembl chr10:84,756,062...84,906,538
JBrowse link
G Tulp3 tubby-like protein 3 acts_upstream_of_or_within IMP (MGI:3841503|PMID:19286674) MGI PMID:19286674 MGI:3841503 NCBI chr 6:128,321,140...128,355,873
Ensembl chr 6:128,321,161...128,355,851
JBrowse link
negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 involved_in ISO RGD
MGI
PMID:9566905 GO_REF:0000096 MGI:4417868 RGD:68736 NCBI chr11:108,917,828...108,950,783
Ensembl chr11:108,920,349...108,950,783
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
positive regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:58,446,438...58,566,828
Ensembl chr 2:58,388,644...58,567,157
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 acts_upstream_of_or_within IDA (MGI:3797993|PMID:18316368) MGI PMID:18316368 MGI:3797993 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within IDA (MGI:3797993|PMID:18316368) MGI PMID:18316368 MGI:3797993 NCBI chr14:33,377,898...33,447,353
Ensembl chr14:33,377,898...33,447,158
JBrowse link
positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gorab golgin, RAB6-interacting acts_upstream_of_or_within IMP (MGI:5766823|PMID:26967474) MGI PMID:26967474 MGI:5766823 NCBI chr 1:163,384,903...163,403,669
Ensembl chr 1:163,384,908...163,403,669
JBrowse link
regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within IGI (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr13:64,432,319...64,439,722
Ensembl chr13:64,432,314...64,441,773
JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IGI (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IGI (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within IMP (MGI:4868517|PMID:21045211) MGI PMID:21045211 MGI:4868517 NCBI chr11:87,853,182...87,863,803
Ensembl chr11:87,853,215...87,863,803
JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IGI (MGI:4439200|PMID:20159594)
(MGI:3709667|PMID:17395647)
MGI PMID:17395647 PMID:20159594 MGI:3709667 MGI:4439200 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IGI (MGI:4439200|PMID:20159594)
(MGI:3709667|PMID:17395647)
MGI PMID:17395647 PMID:20159594 MGI:3709667 MGI:4439200 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within IGI (MGI:5428054|PMID:22689656) MGI PMID:22689656 MGI:5428054 NCBI chr 6:115,853,379...115,926,699
Ensembl chr 6:115,853,470...115,926,699
JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within IMP (MGI:4355593|PMID:19684112) MGI PMID:19684112 MGI:4355593 NCBI chr13:63,508,328...63,573,460
Ensembl chr13:63,508,328...63,573,598
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IGI (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chr10:56,014,293...56,228,968
Ensembl chr10:56,014,293...56,228,689
JBrowse link
G Tulp3 tubby-like protein 3 acts_upstream_of_or_within IMP (MGI:3841513|PMID:19223390) MGI PMID:19223390 MGI:3841513 NCBI chr 6:128,321,140...128,355,873
Ensembl chr 6:128,321,161...128,355,851
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within IMP
IGI
(MGI:5428054|PMID:22689656) MGI PMID:22689656 MGI:5428054 NCBI chr 5:65,199,696...65,260,415
Ensembl chr 5:65,199,696...65,260,415
JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IGI (MGI:3051712|PMID:15215207) MGI PMID:15215207 MGI:3051712 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IGI (MGI:3051712|PMID:15215207) MGI PMID:15215207 MGI:3051712 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IMP (MGI:4355593|PMID:19684112) MGI PMID:19684112 MGI:4355593 NCBI chr19:46,396,896...46,488,804
Ensembl chr19:46,396,896...46,488,804
JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IGI (MGI:3051712|PMID:15215207) MGI PMID:15215207 MGI:3051712 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IGI (MGI:3051712|PMID:15215207) MGI PMID:15215207 MGI:3051712 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IMP (MGI:4355593|PMID:19684112) MGI PMID:19684112 MGI:4355593 NCBI chr19:46,396,896...46,488,804
Ensembl chr19:46,396,896...46,488,804
JBrowse link
smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within
involved_in
IMP (MGI:3841503|PMID:19286674)
(MGI:4888042|PMID:21209331)
MGI
CACAO
PMID:19286674 PMID:21209331 MGI:3841503 MGI:4888042 NCBI chr 6:29,735,497...29,761,366
Ensembl chr 6:29,735,503...29,761,365
JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within IMP (MGI:5052192|PMID:21761479) MGI PMID:21761479 MGI:5052192 NCBI chr 7:44,894,305...44,900,624
Ensembl chr 7:44,896,079...44,902,631
JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IMP
IGI
(MGI:2154468|PMID:11748151)
(MGI:3051712|PMID:15215207)
(MGI:3612806|PMID:16364285)
MGI PMID:11748151 PMID:15215207 PMID:16364285 MGI:2154468 MGI:3051712 MGI:3612806 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IGI (MGI:3612806|PMID:16364285)
(MGI:3051712|PMID:15215207)
MGI PMID:15215207 PMID:16364285 MGI:3051712 MGI:3612806 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within IMP (MGI:5052192|PMID:21761479) MGI PMID:21761479 MGI:5052192 NCBI chr14:57,424,064...57,517,936
Ensembl chr14:57,424,062...57,517,936
JBrowse link
G Intu inturned planar cell polarity protein acts_upstream_of_or_within IMP (MGI:5052192|PMID:21761479) MGI PMID:21761479 MGI:5052192 NCBI chr 3:40,531,291...40,704,776
Ensembl chr 3:40,531,286...40,704,774
JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within IGI
IMP
(MGI:2679893|PMID:14603322)
(MGI:3577662|PMID:15755804), (MGI:3612806|PMID:16364285)
(MGI:3612806|PMID:16364285)
MGI PMID:14603322 PMID:15755804 PMID:16364285 MGI:2679893 MGI:3577662 MGI:3612806 NCBI chr 1:33,719,896...33,742,564
Ensembl chr 1:33,719,887...33,742,564
JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within ISO
IMP
(MGI:2154468|PMID:11748151) MGI PMID:11748151 GO_REF:0000008 MGI:2154458 MGI:2154468 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IMP (MGI:3616741|PMID:16459298) MGI PMID:16459298 MGI:3616741 NCBI chr19:46,396,896...46,488,804
Ensembl chr19:46,396,896...46,488,804
JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in IMP (MGI:3587461|PMID:16020526) UniProt PMID:16020526 MGI:3587461 NCBI chr10:87,490,819...87,493,660
Ensembl chr10:87,490,819...87,493,660
JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:119,325,784...119,335,666
Ensembl chr 2:119,325,784...119,335,962
JBrowse link
G Foxn4 forkhead box N4 involved_in IMP (MGI:3587461|PMID:16020526), (MGI:3765356|PMID:17728344) UniProt PMID:16020526 PMID:17728344 MGI:3587461 MGI:3765356 NCBI chr 5:114,254,164...114,274,418
Ensembl chr 5:114,254,164...114,273,807
JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within IMP (MGI:1334824|PMID:10217145) MGI PMID:10217145 MGI:1334824 NCBI chr 2:147,176,485...147,195,434
Ensembl chr 2:147,177,546...147,194,243
JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 acts_upstream_of_or_within IMP (MGI:2136554|PMID:11239429) MGI PMID:11239429 MGI:2136554 NCBI chr 7:49,631,499...49,636,835
Ensembl chr 7:49,631,499...49,636,849
JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 acts_upstream_of_or_within IMP (MGI:5435948|PMID:22932389) MGI PMID:22932389 MGI:5435948 NCBI chr19:25,610,246...25,623,921
Ensembl chr19:25,610,301...25,623,921
JBrowse link
G Lhx3 LIM homeobox protein 3 acts_upstream_of_or_within IDA (MGI:4356383|PMID:19666821) MGI PMID:19666821 MGI:4356383 NCBI chr 2:26,200,212...26,208,249
Ensembl chr 2:26,200,212...26,208,289
JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within ISO MGI GO_REF:0000008 MGI:2154458 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Sox1 SRY (sex determining region Y)-box 1 acts_upstream_of_or_within IMP (MGI:4834949|PMID:20844123) MGI PMID:20844123 MGI:4834949 NCBI chr 8:12,395,519...12,399,555
Ensembl chr 8:12,395,295...12,400,126
JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:76,241,090...76,311,748
Ensembl chr18:76,241,580...76,310,963
JBrowse link
G Smad6 SMAD family member 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:63,953,076...64,022,085
Ensembl chr 9:63,953,076...64,022,059
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28615
    multicellular organismal process 8993
      pattern specification process 490
        regionalization 383
          dorsal/ventral pattern formation 103
            determination of dorsal identity + 11
            determination of dorsal/ventral asymmetry + 11
            determination of ventral identity 1
            dorsal/ventral axis specification + 13
            dorsal/ventral neural tube patterning + 32
            dorsal/ventral pattern formation, imaginal disc + 0
            embryonic heart tube dorsal/ventral pattern formation 0
            forebrain dorsal/ventral pattern formation 7
            spinal cord dorsal/ventral patterning + 21
Path 2
Term Annotations click to browse term
  biological_process 28615
    developmental process 7145
      anatomical structure development 6528
        multicellular organism development 5880
          pattern specification process 490
            regionalization 383
              dorsal/ventral pattern formation 103
                determination of dorsal identity + 11
                determination of dorsal/ventral asymmetry + 11
                determination of ventral identity 1
                dorsal/ventral axis specification + 13
                dorsal/ventral neural tube patterning + 32
                dorsal/ventral pattern formation, imaginal disc + 0
                embryonic heart tube dorsal/ventral pattern formation 0
                forebrain dorsal/ventral pattern formation 7
                spinal cord dorsal/ventral patterning + 21
paths to the root