Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:dorsal/ventral pattern formation
go back to main search page
Accession:GO:0009953 term browser browse the term
Definition:The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
Synonyms:exact_synonym: dorsoventral pattern formation
 narrow_synonym: dorsal/ventral pattern specification



show annotations for term's descendants           Sort by:
 
dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr36:3,743,257...3,818,659
Ensembl chr36:3,744,163...3,818,652
JBrowse link
G ACVRL1 activin A receptor like type 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr27:3,075,373...3,090,549
Ensembl chr27:3,076,124...3,092,469
JBrowse link
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (MGI:2449253|PMID:12645927) MGI PMID:12645927 MGI:2449253 NCBI chr 3:252,052...380,506
Ensembl chr 3:253,081...322,993
JBrowse link
G ARL13B ADP ribosylation factor like GTPase 13B acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr33:1,698,360...1,762,846
Ensembl chr33:1,698,363...1,761,641
JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within ISO (MGI:3797993|PMID:18316368) MGI PMID:18316368 MGI:3797993 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:3574003|PMID:15673568)
(PMID:21873635)
MGI
GO_Central
Ensembl
GO_Central
PMID:15673568 PMID:21873635 GO_REF:0000107 MGI:3574003 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:3574003|PMID:15673568)
(PMID:21873635)
MGI
GO_Central
GO_Central
PMID:15673568 PMID:21873635 MGI:3574003 NCBI chr32:17,761,555...17,978,056
Ensembl chr32:17,870,904...18,016,444
JBrowse link
G CHRD chordin acts_upstream_of_or_within ISO (MGI:2662951|PMID:12810603) MGI PMID:12810603 MGI:2662951 NCBI chr34:17,255,770...17,264,776
Ensembl chr34:17,255,562...17,271,713
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3529734|PMID:15708565) MGI PMID:15708565 MGI:3529734 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G DISP1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804)
(MGI:3051703|PMID:15269168)
MGI PMID:15269168 PMID:15755804 MGI:3051703 MGI:3577662 NCBI chr38:23,716,436...23,871,497
Ensembl chr38:23,711,780...23,871,846
JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO (MGI:3610248|PMID:16229832)
(MGI:5441704|PMID:21552265)
(MGI:3577662|PMID:15755804), (MGI:3588600|PMID:16061793)
MGI PMID:15755804 PMID:16061793 PMID:16229832 PMID:21552265 MGI:3577662 MGI:3588600 MGI:3610248 MGI:5441704 NCBI chr 5:28,566,604...28,727,416
Ensembl chr 5:28,388,664...28,727,334
JBrowse link
G EDN1 endothelin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3043904|PMID:15110048) Ensembl
Ensembl
MGI
PMID:15110048 GO_REF:0000107 MGI:3043904 NCBI chr35:11,808,892...11,815,383
Ensembl chr35:11,808,892...11,815,383
JBrowse link
G ELL elongation factor for RNA polymerase II involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:44,512,665...44,592,156
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within ISO (MGI:1194987|PMID:9362463), (MGI:81767|PMID:8684466) MGI PMID:8684466 PMID:9362463 MGI:1194987 MGI:81767 NCBI chr19:31,124,325...31,129,538 JBrowse link
G FBXL15 F-box and leucine rich repeat protein 15 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr28:14,927,740...14,929,867
Ensembl chr28:14,927,532...14,929,863
JBrowse link
G FGF8 fibroblast growth factor 8 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468
JBrowse link
G FKBP8 FKBP prolyl isomerase 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3039989|PMID:15105374) MGI
Ensembl
PMID:15105374 GO_REF:0000107 MGI:3039989 NCBI chr20:44,494,856...44,504,084
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr24:1,010,370...1,013,791
Ensembl chr24:1,010,651...1,013,072
JBrowse link
G FOXG1 forkhead box G1 acts_upstream_of_or_within ISO (MGI:3581994|PMID:15893304)
(MGI:2679162|PMID:14566948)
MGI PMID:14566948 PMID:15893304 MGI:2679162 MGI:3581994 NCBI chr 8:8,276,300...8,279,785 JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3710452|PMID:17504940) MGI PMID:17504940 MGI:3710452 NCBI chr 1:72,927,346...72,930,119
Ensembl chr 1:72,927,670...72,928,827
JBrowse link
G GLI1 GLI family zinc finger 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3617688|PMID:16342201) Ensembl
Ensembl
MGI
PMID:16342201 GO_REF:0000107 MGI:3617688 NCBI chr10:1,565,306...1,575,971
Ensembl chr10:1,565,244...1,575,982
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3617688|PMID:16342201) MGI PMID:16342201 MGI:3617688 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3028732|PMID:14723851)
(MGI:2445272|PMID:12435629), (MGI:3624182|PMID:16571630)
MGI
InterPro
InterPro
PMID:12435629 PMID:14723851 PMID:16571630 GO_REF:0000002 MGI:2445272 MGI:3028732 MGI:3624182 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G HHIP hedgehog interacting protein acts_upstream_of_or_within ISO (MGI:3511726|PMID:15576403) MGI PMID:15576403 MGI:3511726 NCBI chr15:43,432,464...43,525,973
Ensembl chr15:43,431,650...43,520,861
JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within ISO (MGI:2135652|PMID:11493536) MGI PMID:11493536 MGI:2135652 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1335668|PMID:10230789) Ensembl
Ensembl
MGI
PMID:10230789 GO_REF:0000107 MGI:1335668 NCBI chr14:40,273,992...40,276,975
Ensembl chr14:40,274,469...40,276,239
JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1335668|PMID:10230789) Ensembl
Ensembl
MGI
PMID:10230789 GO_REF:0000107 MGI:1335668 NCBI chr 9:24,803,996...24,810,109
Ensembl chr 9:24,804,426...24,806,614
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:2135652|PMID:11493536) MGI PMID:11493536 MGI:2135652 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804)
(MGI:5441704|PMID:21552265)
MGI PMID:15755804 PMID:21552265 MGI:3577662 MGI:5441704 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2679893|PMID:14603322), (MGI:3577662|PMID:15755804), (MGI:5441704|PMID:21552265)
(MGI:3588600|PMID:16061793)
Ensembl
Ensembl
MGI
PMID:14603322 PMID:15755804 PMID:16061793 PMID:21552265 GO_REF:0000107 MGI:2679893 MGI:3577662 MGI:3588600 MGI:5441704 NCBI chr17:21,389,462...21,426,970
Ensembl chr17:21,389,482...21,426,796
JBrowse link
G IFT52 intraflagellar transport 52 acts_upstream_of_or_within ISO (MGI:3579954|PMID:15930098) MGI PMID:15930098 MGI:3579954 NCBI chr24:31,295,987...31,334,825
Ensembl chr24:31,296,015...31,334,808
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804), (MGI:3579954|PMID:15930098) MGI PMID:15755804 PMID:15930098 MGI:3577662 MGI:3579954 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266
JBrowse link
G ISYNA1 inositol-3-phosphate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:44,594,816...44,598,495
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr11:20,988,516...21,044,151
Ensembl chr11:20,928,655...21,044,090
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:1344734|PMID:10498685) UniProt
Ensembl
UniProt
MGI
PMID:10498685 GO_REF:0000024 GO_REF:0000107 MGI:1344734 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164
JBrowse link
G LHX2 LIM homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1930361|PMID:11165475), (MGI:2679162|PMID:14566948) Ensembl
Ensembl
MGI
PMID:11165475 PMID:14566948 GO_REF:0000107 MGI:1930361 MGI:2679162 NCBI chr 9:58,825,505...58,859,311
Ensembl chr 9:58,825,492...58,845,883
JBrowse link
G LHX3 LIM homeobox 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3771226|PMID:18037398) MGI
Ensembl
PMID:18037398 GO_REF:0000107 MGI:3771226 NCBI chr 9:49,248,555...49,254,128
Ensembl chr 9:49,248,621...49,254,118
JBrowse link
G LMX1B LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:10767331) UniProt PMID:10767331 NCBI chr 9:56,542,844...56,625,609
Ensembl chr 9:56,542,826...56,625,530
JBrowse link
G LRP4 LDL receptor related protein 4 acts_upstream_of_or_within ISO (MGI:3619629|PMID:16207730)
(MGI:3703100|PMID:17119023)
MGI PMID:16207730 PMID:17119023 MGI:3619629 MGI:3703100 NCBI chr18:42,616,683...42,667,297
Ensembl chr18:42,616,426...42,665,794
JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 9:31,455,389...31,456,057 JBrowse link
G NOTO notochord homeobox acts_upstream_of_or_within ISO (MGI:64560|PMID:8155581) MGI PMID:8155581 MGI:64560
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2656991|PMID:12652306) MGI PMID:12652306 MGI:2656991 NCBI chr 8:32,435,169...32,445,093
Ensembl chr 8:32,435,863...32,445,446
JBrowse link
G OVOL2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (MGI:3618450|PMID:16423343) MGI PMID:16423343 MGI:3618450 NCBI chr24:5,020,608...5,050,487
Ensembl chr24:5,020,813...5,050,309
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within ISO (MGI:3581509|PMID:15878992)
(MGI:3512833|PMID:15548580)
MGI PMID:15548580 PMID:15878992 MGI:3512833 MGI:3581509
G PROP1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO (MGI:2389279|PMID:12183375)
(MGI:3512715|PMID:15459176)
MGI PMID:12183375 PMID:15459176 MGI:2389279 MGI:3512715 NCBI chr11:2,739,958...2,742,576
Ensembl chr11:2,739,958...2,743,533
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within ISO (MGI:3511726|PMID:15576403) MGI PMID:15576403 MGI:3511726 NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3051703|PMID:15269168)
(MGI:5441704|PMID:21552265)
MGI
Ensembl
PMID:15269168 PMID:21552265 GO_REF:0000107 MGI:3051703 MGI:5441704 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (MGI:3624182|PMID:16571630)
(MGI:3577662|PMID:15755804)
MGI PMID:15755804 PMID:16571630 MGI:3577662 MGI:3624182 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033
JBrowse link
G SP8 Sp8 transcription factor acts_upstream_of_or_within ISO (MGI:2679409|PMID:14597661) MGI PMID:14597661 MGI:2679409 NCBI chr14:34,786,296...34,791,495 JBrowse link
G TBX20 T-box transcription factor 20 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3579960|PMID:15901664) Ensembl
Ensembl
MGI
PMID:15901664 GO_REF:0000107 MGI:3579960 NCBI chr14:46,891,706...46,946,899
Ensembl chr14:46,896,228...46,947,507
JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (MGI:3697552|PMID:17082251) MGI PMID:17082251 MGI:3697552 NCBI chr 7:70,040,376...70,048,346
Ensembl chr 7:70,040,508...70,047,912
JBrowse link
G WNT7A Wnt family member 7A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1194987|PMID:9362463), (MGI:71658|PMID:7885472) Ensembl
Ensembl
MGI
PMID:7885472 PMID:9362463 GO_REF:0000107 MGI:1194987 MGI:71658 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
JBrowse link
BMP signaling pathway involved in spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (PMID:11472837) BHF-UCL PMID:11472837 NCBI chr34:17,255,770...17,264,776
Ensembl chr34:17,255,562...17,271,713
JBrowse link
determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CER1 cerberus 1, DAN family BMP antagonist involved_in ISO (PMID:9660951) BHF-UCL PMID:9660951 NCBI chr11:35,155,568...35,159,085
Ensembl chr11:35,156,430...35,158,942
JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr30:2,219,535...2,231,868
Ensembl chr30:2,222,898...2,225,418
JBrowse link
G GREM2 gremlin 2, DAN family BMP antagonist involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:32,048,151...32,157,698
Ensembl chr 7:32,048,183...32,157,146
JBrowse link
G NBL1 NBL1, DAN family BMP antagonist involved_in ISO (MGI:1203284|PMID:9660951) BHF-UCL PMID:9660951 MGI:1203284 NCBI chr 2:79,040,206...79,102,792
Ensembl chr 2:79,041,105...79,102,820
JBrowse link
determination of ventral identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIDA axin interactor, dorsalization associated involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr38:16,938,279...16,971,200
Ensembl chr38:16,939,556...16,971,200
JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within ISO (MGI:1337175|PMID:10330403) MGI PMID:10330403 MGI:1337175 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2670493|PMID:12923052) Ensembl
Ensembl
MGI
PMID:12923052 GO_REF:0000107 MGI:2670493 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:2670493|PMID:12923052) MGI PMID:12923052 MGI:2670493 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3823171|PMID:18985738) MGI PMID:18985738 MGI:3823171 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G MDFI MyoD family inhibitor involved_in ISO (MGI:4441142|PMID:11238923) UniProt PMID:11238923 MGI:4441142 NCBI chr12:10,324,499...10,339,699
Ensembl chr12:10,323,552...10,339,697
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within ISO (MGI:1350715|PMID:10588713) MGI PMID:10588713 MGI:1350715
G SENP2 SUMO specific peptidase 2 ISO RGD PMID:10944533 RGD:1299408 NCBI chr34:18,325,373...18,357,152
Ensembl chr34:18,325,553...18,356,192
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in ISO (PMID:9192640) UniProt PMID:9192640 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964
JBrowse link
G VAX2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO (MGI:2157790|PMID:11830579)
(MGI:2157789|PMID:11830578)
MGI PMID:11830578 PMID:11830579 MGI:2157789 MGI:2157790 NCBI chr10:69,252,926...69,262,225 JBrowse link
G WNT3 Wnt family member 3 acts_upstream_of_or_within ISO (MGI:2450015|PMID:12569130) MGI PMID:12569130 MGI:2450015 NCBI chr 9:10,073,019...10,124,454
Ensembl chr 9:10,077,567...10,124,508
JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3046395|PMID:15218525) Ensembl
Ensembl
MGI
PMID:15218525 GO_REF:0000107 MGI:3046395 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G ELL elongation factor for RNA polymerase II involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:44,512,665...44,592,156
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G FKBP8 FKBP prolyl isomerase 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3806189|PMID:18590716)
(MGI:3774974|PMID:18003640)
MGI
Ensembl
Ensembl
PMID:18003640 PMID:18590716 GO_REF:0000107 MGI:3774974 MGI:3806189 NCBI chr20:44,494,856...44,504,084
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G FOXA1 forkhead box A1 acts_upstream_of_or_within ISO (MGI:5486225|PMID:23383217) MGI PMID:23383217 MGI:5486225 NCBI chr 8:16,072,629...16,083,105
Ensembl chr 8:16,079,140...16,083,807
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716)
(MGI:894511|PMID:9226455)
(MGI:5486225|PMID:23383217)
MGI PMID:9226455 PMID:18590716 PMID:23383217 MGI:3806189 MGI:5486225 MGI:894511 NCBI chr24:1,010,370...1,013,791
Ensembl chr24:1,010,651...1,013,072
JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3710451|PMID:17504941)
(MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940)
MGI PMID:17504940 PMID:17504941 MGI:3710451 MGI:3710452 NCBI chr 1:72,927,346...72,930,119
Ensembl chr 1:72,927,670...72,928,827
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674)
(MGI:894564|PMID:9247260)
MGI PMID:9247260 PMID:18590716 PMID:19286674 MGI:3806189 MGI:3841503 MGI:894564 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GSC goosecoid homeobox acts_upstream_of_or_within ISO (MGI:894511|PMID:9226455) MGI PMID:9226455 MGI:894511 NCBI chr 8:63,684,149...63,707,030
Ensembl chr 8:63,684,137...63,707,054
JBrowse link
G ISYNA1 inositol-3-phosphate synthase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:44,594,816...44,598,495
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within
involved_in
ISO (MGI:3806189|PMID:18590716)
(MGI:4888042|PMID:21209331)
(MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674)
MGI
BHF-UCL
PMID:18590716 PMID:19286674 PMID:21209331 MGI:3806189 MGI:3841503 MGI:4888042 NCBI chr11:20,988,516...21,044,151
Ensembl chr11:20,928,655...21,044,090
JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr16:19,509,038...19,514,378
Ensembl chr16:19,499,582...19,512,836
JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr 2:79,813,835...79,952,490
Ensembl chr 2:79,815,748...79,915,003
JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1347695|PMID:10557208) Ensembl
Ensembl
MGI
PMID:10557208 GO_REF:0000107 MGI:1347695 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532
JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208) MGI PMID:10557208 MGI:1347695 NCBI chr 7:38,147,157...38,163,023
Ensembl chr 7:38,147,173...38,166,722
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within ISO (MGI:1095757|PMID:9262482) MGI PMID:9262482 MGI:1095757 NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662
JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in ISO (MGI:69552|PMID:7720556) UniProt PMID:7720556 MGI:69552 NCBI chr12:24,388,530...24,438,956
Ensembl chr12:24,387,643...24,421,869
JBrowse link
G RNF220 ring finger protein 220 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6220747|PMID:30177510) MGI
Ensembl
Ensembl
PMID:30177510 GO_REF:0000107 MGI:6220747 NCBI chr15:15,664,025...15,898,564
Ensembl chr15:15,664,876...15,891,748
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3710451|PMID:17504941)
(MGI:3710017|PMID:17442700), (MGI:3806189|PMID:18590716)
Ensembl
Ensembl
MGI
PMID:17442700 PMID:17504941 PMID:18590716 GO_REF:0000107 MGI:3710017 MGI:3710451 MGI:3806189 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033
JBrowse link
G TCTN1 tectonic family member 1 acts_upstream_of_or_within ISO (MGI:3610767|PMID:16357211) MGI PMID:16357211 MGI:3610767 NCBI chr26:8,411,429...8,444,640
Ensembl chr26:8,407,105...8,437,027
JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3841503|PMID:19286674) MGI
Ensembl
PMID:19286674 GO_REF:0000107 MGI:3841503 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097
JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (MGI:64780|PMID:8299937) MGI PMID:8299937 MGI:64780 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412
JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (MGI:3624179|PMID:16613831) MGI PMID:16613831 MGI:3624179 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:1352305|PMID:10625551) MGI PMID:10625551 MGI:1352305 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G GSX2 GS homeobox 2 acts_upstream_of_or_within ISO (MGI:1926244|PMID:11060228), (MGI:1928687|PMID:11124115), (MGI:3838261|PMID:18701439) MGI PMID:11060228 PMID:11124115 PMID:18701439 MGI:1926244 MGI:1928687 MGI:3838261 NCBI chr13:46,640,172...46,642,405
Ensembl chr13:46,640,172...46,641,546
JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1339462|PMID:10393115), (MGI:1928567|PMID:11163262), (MGI:2157787|PMID:11830575) Ensembl
Ensembl
MGI
PMID:10393115 PMID:11163262 PMID:11830575 GO_REF:0000107 MGI:1339462 MGI:1928567 MGI:2157787
G PAX6 paired box 6 acts_upstream_of_or_within ISO (MGI:1928687|PMID:11124115)
(MGI:1913185|PMID:11050125), (MGI:3838261|PMID:18701439), (MGI:5662366|PMID:24528677)
MGI PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 MGI:1913185 MGI:1928687 MGI:3838261 MGI:5662366
G SIX3 SIX homeobox 3 involved_in ISO (PMID:18791198) UniProt PMID:18791198 NCBI chr10:47,332,875...47,369,359
Ensembl chr10:47,332,888...47,343,635
JBrowse link
G TTC21B tetratricopeptide repeat domain 21B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4367927|PMID:19732765) Ensembl
Ensembl
MGI
PMID:19732765 GO_REF:0000107 MGI:4367927 NCBI chr36:11,009,362...11,086,586
Ensembl chr36:11,010,296...11,086,674
JBrowse link
negative regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDIT3 DNA damage inducible transcript 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:1,606,693...1,612,410
Ensembl chr10:1,606,693...1,611,303
JBrowse link
G SOSTDC1 sclerostin domain containing 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:31,035,759...31,079,139
Ensembl chr14:31,022,766...31,026,737
Ensembl chr14:31,022,766...31,026,737
JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr 1:97,623,126...97,662,668
Ensembl chr 1:97,622,998...97,662,662
JBrowse link
G GPR161 G protein-coupled receptor 161 involved_in ISO (MGI:5468365|PMID:23332756) UniProt PMID:23332756 MGI:5468365 NCBI chr 7:30,364,999...30,411,038
Ensembl chr 7:30,366,068...30,407,268
JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO (MGI:5308523|PMID:22007132) MGI PMID:22007132 MGI:5308523 NCBI chr20:48,416,730...48,425,237
Ensembl chr20:48,409,045...48,426,669
JBrowse link
G PRKACB protein kinase cAMP-activated catalytic subunit beta involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5308523|PMID:22007132) Ensembl
Ensembl
MGI
PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr 6:63,615,445...63,729,386
Ensembl chr 6:63,618,323...63,730,146
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4355593|PMID:19684112) Ensembl
Ensembl
MGI
PMID:19684112 GO_REF:0000107 MGI:4355593 NCBI chr28:14,992,989...15,115,499
Ensembl chr28:14,992,618...15,112,389
JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chr25:48,782,448...48,836,993
Ensembl chr25:48,782,463...48,834,374
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3844764|PMID:19334287) Ensembl
Ensembl
MGI
PMID:19334287 GO_REF:0000107 MGI:3844764 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097
JBrowse link
negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331) BHF-UCL PMID:21209331 MGI:4888042 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
JBrowse link
G RFX4 regulatory factor X4 involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:5430880|PMID:19887680)
GO_Central
GO_Central
Ensembl
MGI
PMID:19887680 PMID:21873635 GO_REF:0000107 MGI:5430880 NCBI chr10:31,993,339...32,155,896
Ensembl chr10:31,994,594...32,155,500
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3841503|PMID:19286674) Ensembl
Ensembl
MGI
PMID:19286674 GO_REF:0000107 MGI:3841503 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097
JBrowse link
negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 ISO RGD PMID:9566905 RGD:68736 NCBI chr 9:14,559,476...14,588,950
Ensembl chr 9:14,559,388...14,588,530
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in ISO (PMID:9192640) UniProt PMID:9192640 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964
JBrowse link
positive regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr36:3,743,257...3,818,659
Ensembl chr36:3,744,163...3,818,652
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3797993|PMID:18316368) MGI PMID:18316368 MGI:3797993 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G MAPK8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (MGI:3797993|PMID:18316368) MGI PMID:18316368 MGI:3797993 NCBI chr28:323,361...410,367
Ensembl chr28:368,513...406,401
JBrowse link
positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GORAB golgin, RAB6 interacting acts_upstream_of_or_within ISO (MGI:5766823|PMID:26967474) MGI PMID:26967474 MGI:5766823 NCBI chr 7:28,220,679...28,241,035
Ensembl chr 7:28,221,064...28,241,012
JBrowse link
regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr 1:97,623,126...97,662,668
Ensembl chr 1:97,622,998...97,662,662
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4868517|PMID:21045211) Ensembl
Ensembl
MGI
PMID:21045211 GO_REF:0000107 MGI:4868517 NCBI chr 9:32,865,972...32,878,712
Ensembl chr 9:32,860,995...32,879,338
JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3709667|PMID:17395647)
(MGI:4439200|PMID:20159594)
MGI PMID:17395647 PMID:20159594 MGI:3709667 MGI:4439200 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:4439200|PMID:20159594)
(MGI:3709667|PMID:17395647)
MGI PMID:17395647 PMID:20159594 MGI:3709667 MGI:4439200 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (MGI:5428054|PMID:22689656) MGI PMID:22689656 MGI:5428054 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within ISO (MGI:4355593|PMID:19684112) MGI PMID:19684112 MGI:4355593 NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662
JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chr 1:60,662,704...60,873,881
Ensembl chr 1:60,667,721...60,873,614
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3841513|PMID:19223390) Ensembl
Ensembl
MGI
PMID:19223390 GO_REF:0000107 MGI:3841513 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097
JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within ISO (MGI:5428054|PMID:22689656) MGI PMID:22689656 MGI:5428054 NCBI chr 3:73,115,560...73,213,823
Ensembl chr 3:73,137,250...73,221,512
JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3051712|PMID:15215207) MGI PMID:15215207 MGI:3051712 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:3051712|PMID:15215207) MGI PMID:15215207 MGI:3051712 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4355593|PMID:19684112) Ensembl
Ensembl
MGI
PMID:19684112 GO_REF:0000107 MGI:4355593 NCBI chr28:14,992,989...15,115,499
Ensembl chr28:14,992,618...15,112,389
JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3051712|PMID:15215207) MGI PMID:15215207 MGI:3051712 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:3051712|PMID:15215207) MGI PMID:15215207 MGI:3051712 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4355593|PMID:19684112) Ensembl
Ensembl
MGI
PMID:19684112 GO_REF:0000107 MGI:4355593 NCBI chr28:14,992,989...15,115,499
Ensembl chr28:14,992,618...15,112,389
JBrowse link
smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within
involved_in
ISO (MGI:3841503|PMID:19286674)
(MGI:4888042|PMID:21209331)
MGI
CACAO
PMID:19286674 PMID:21209331 MGI:3841503 MGI:4888042 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033
JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:5052192|PMID:21761479) MGI PMID:21761479 MGI:5052192 NCBI chr 1:106,742,381...106,752,543
Ensembl chr 1:106,747,860...106,805,699
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3612806|PMID:16364285)
(MGI:2154468|PMID:11748151)
(MGI:3051712|PMID:15215207)
MGI PMID:11748151 PMID:15215207 PMID:16364285 MGI:2154468 MGI:3051712 MGI:3612806 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:3612806|PMID:16364285)
(MGI:3051712|PMID:15215207)
MGI PMID:15215207 PMID:16364285 MGI:3051712 MGI:3612806 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:5052192|PMID:21761479) MGI PMID:21761479 MGI:5052192 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266
JBrowse link
G INTU inturned planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5052192|PMID:21761479) Ensembl
Ensembl
MGI
PMID:21761479 GO_REF:0000107 MGI:5052192 NCBI chr19:13,193,252...13,276,593
Ensembl chr19:13,164,245...13,276,496
JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (MGI:2679893|PMID:14603322)
(MGI:3612806|PMID:16364285)
(MGI:3577662|PMID:15755804), (MGI:3612806|PMID:16364285)
MGI PMID:14603322 PMID:15755804 PMID:16364285 MGI:2679893 MGI:3577662 MGI:3612806 NCBI chr12:24,388,530...24,438,956
Ensembl chr12:24,387,643...24,421,869
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
PMID:9230312
(MGI:2154468|PMID:11748151)
Ensembl
Ensembl
MGI
PMID:9230312 PMID:11748151 GO_REF:0000107 MGI:2154468 RGD:8553789 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3616741|PMID:16459298) MGI
Ensembl
PMID:16459298 GO_REF:0000107 MGI:3616741 NCBI chr28:14,992,989...15,115,499
Ensembl chr28:14,992,618...15,112,389
JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in ISO (MGI:3587461|PMID:16020526) UniProt PMID:16020526 MGI:3587461 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391
JBrowse link
G DLL4 delta like canonical Notch ligand 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr30:8,059,463...8,068,742
Ensembl chr30:8,059,512...8,067,940
JBrowse link
G FOXN4 forkhead box N4 involved_in ISO (MGI:3587461|PMID:16020526), (MGI:3765356|PMID:17728344) UniProt PMID:16020526 PMID:17728344 MGI:3587461 MGI:3765356 NCBI chr26:17,730,638...17,757,173
Ensembl chr26:17,728,878...17,755,602
JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO (MGI:1334824|PMID:10217145) MGI PMID:10217145 MGI:1334824 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874
JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBX1 developing brain homeobox 1 acts_upstream_of_or_within ISO (MGI:2136554|PMID:11239429) MGI PMID:11239429 MGI:2136554 NCBI chr21:42,207,205...42,214,954
Ensembl chr21:42,208,346...42,212,415
JBrowse link
G DMRT3 doublesex and mab-3 related transcription factor 3 acts_upstream_of_or_within ISO (MGI:5435948|PMID:22932389) MGI PMID:22932389 MGI:5435948 NCBI chr 1:89,798,215...89,813,140
Ensembl chr 1:89,798,100...89,812,328
JBrowse link
G LHX3 LIM homeobox 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4356383|PMID:19666821) MGI
Ensembl
PMID:19666821 GO_REF:0000107 MGI:4356383 NCBI chr 9:49,248,555...49,254,128
Ensembl chr 9:49,248,621...49,254,118
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SOX1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:4834949|PMID:20844123) MGI PMID:20844123 MGI:4834949 NCBI chr22:59,902,113...59,903,820 JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMAD2 SMAD family member 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:43,696,883...43,778,063
Ensembl chr 7:43,700,445...43,769,983
JBrowse link
G SMAD6 SMAD family member 6 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr30:30,938,908...31,014,259
Ensembl chr30:30,937,849...31,014,583
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16237
    multicellular organismal process 7775
      pattern specification process 485
        regionalization 384
          dorsal/ventral pattern formation 106
            determination of dorsal identity + 9
            determination of dorsal/ventral asymmetry + 10
            determination of ventral identity 1
            dorsal/ventral axis specification + 13
            dorsal/ventral neural tube patterning + 34
            dorsal/ventral pattern formation, imaginal disc + 0
            embryonic heart tube dorsal/ventral pattern formation 0
            forebrain dorsal/ventral pattern formation 7
            spinal cord dorsal/ventral patterning + 21
Path 2
Term Annotations click to browse term
  biological_process 16237
    developmental process 6471
      anatomical structure development 6003
        multicellular organism development 5460
          pattern specification process 485
            regionalization 384
              dorsal/ventral pattern formation 106
                determination of dorsal identity + 9
                determination of dorsal/ventral asymmetry + 10
                determination of ventral identity 1
                dorsal/ventral axis specification + 13
                dorsal/ventral neural tube patterning + 34
                dorsal/ventral pattern formation, imaginal disc + 0
                embryonic heart tube dorsal/ventral pattern formation 0
                forebrain dorsal/ventral pattern formation 7
                spinal cord dorsal/ventral patterning + 21
paths to the root