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ONTOLOGY REPORT - ANNOTATIONS

Term:dorsal/ventral pattern formation
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Accession:GO:0009953 term browser browse the term
Definition:The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
Synonyms:exact_synonym: dorsoventral pattern formation
 narrow_synonym: dorsal/ventral pattern specification


show annotations for term's descendants           Sort by:
dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr36:3,743,257...3,818,659
Ensembl chr36:3,744,163...3,818,652 		JBrowse link
G ACVRL1 activin A receptor like type 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr27:3,075,373...3,090,549
Ensembl chr27:3,076,124...3,092,469 		JBrowse link
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:12645927) MGI PMID:12645927 NCBI chr 3:252,052...380,506
Ensembl chr 3:253,081...322,993 		JBrowse link
G ARL13B ADP ribosylation factor like GTPase 13B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr33:1,698,360...1,762,846
Ensembl chr33:1,698,363...1,761,641 		JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343 		JBrowse link
G BMP1 bone morphogenetic protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr25:35,043,594...35,087,282
Ensembl chr25:35,020,751...35,087,545 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within		 IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr32:17,761,555...17,978,056
Ensembl chr32:17,870,904...18,016,444 		JBrowse link
G CHRD chordin acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:12810603) MGI
GO_Central		 PMID:12810603 GO_REF:0000033 NCBI chr34:17,255,770...17,264,776
Ensembl chr34:17,255,562...17,271,713 		JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927 		JBrowse link
G DISP1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr38:23,716,436...23,871,497
Ensembl chr38:23,711,780...23,871,846 		JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO (PMID:16229832)
(PMID:21552265)
(PMID:15755804), (PMID:16061793)		 MGI PMID:15755804 PMID:16061793 PMID:16229832 PMID:21552265 NCBI chr 5:28,566,604...28,727,416
Ensembl chr 5:28,388,664...28,727,334 		JBrowse link
G EDN1 endothelin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr35:11,808,892...11,815,383
Ensembl chr35:11,808,892...11,815,383 		JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:31,124,325...31,129,538 JBrowse link
G FBXL15 F-box and leucine rich repeat protein 15 involved_in ISS UniProt GO_REF:0000024 NCBI chr28:14,927,740...14,929,867
Ensembl chr28:14,927,532...14,929,863 		JBrowse link
G FGF8 fibroblast growth factor 8 involved_in IBA GO_Central GO_REF:0000033 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468 		JBrowse link
G FKBP8 FKBP prolyl isomerase 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:44,494,856...44,504,084
Ensembl chr20:44,489,219...44,598,497 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chr24:1,010,370...1,013,791
Ensembl chr24:1,010,651...1,013,072 		JBrowse link
G FOXG1 forkhead box G1 acts_upstream_of_or_within ISO (PMID:15893304)
(PMID:14566948)		 MGI PMID:14566948 PMID:15893304 NCBI chr 8:8,276,300...8,279,785 JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940) MGI PMID:17504940 NCBI chr 1:72,927,346...72,930,119
Ensembl chr 1:72,927,670...72,928,827 		JBrowse link
G GLI1 GLI family zinc finger 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:1,565,306...1,575,971
Ensembl chr10:1,565,244...1,575,982 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G HHIP hedgehog interacting protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:43,432,464...43,525,973
Ensembl chr15:43,431,650...43,520,861 		JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919 		JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:40,273,992...40,276,975
Ensembl chr14:40,274,469...40,276,239 		JBrowse link
G HOXB2 homeobox B2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:24,803,996...24,810,109
Ensembl chr 9:24,804,426...24,806,614 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:11493536) MGI PMID:11493536 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766 		JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:15755804)
(PMID:21552265)		 MGI PMID:15755804 PMID:21552265 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906 		JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:21,389,462...21,426,970
Ensembl chr17:21,389,482...21,426,796 		JBrowse link
G IFT52 intraflagellar transport 52 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:31,295,987...31,334,825
Ensembl chr24:31,296,015...31,334,808 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:15755804), (PMID:15930098) MGI PMID:15755804 PMID:15930098 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr11:20,988,516...21,044,151
Ensembl chr11:20,928,655...21,044,090 		JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164 		JBrowse link
G LHX2 LIM homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:58,825,505...58,859,311
Ensembl chr 9:58,825,492...58,845,883 		JBrowse link
G LHX3 LIM homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:49,248,555...49,254,128
Ensembl chr 9:49,248,621...49,254,118 		JBrowse link
G LMX1B LIM homeobox transcription factor 1 beta involved_in ISO (PMID:10767331) UniProt PMID:10767331 NCBI chr 9:56,542,844...56,625,609
Ensembl chr 9:56,542,826...56,625,530 		JBrowse link
G LOC119877796 homeobox protein TGIF1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G LRP4 LDL receptor related protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:42,616,683...42,667,297
Ensembl chr18:42,616,426...42,665,794 		JBrowse link
G NOG noggin involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G NOTO notochord homeobox acts_upstream_of_or_within ISO (PMID:8155581) MGI PMID:8155581
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:12652306) MGI PMID:12652306 NCBI chr 8:32,435,169...32,445,093
Ensembl chr 8:32,435,863...32,445,446 		JBrowse link
G OVOL2 ovo like zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:5,020,608...5,050,487
Ensembl chr24:5,020,813...5,050,309 		JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G PROP1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO (PMID:15459176)
(PMID:12183375)		 MGI PMID:12183375 PMID:15459176 NCBI chr11:2,739,958...2,742,576
Ensembl chr11:2,739,958...2,743,533 		JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033 		JBrowse link
G SP8 Sp8 transcription factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:34,786,296...34,791,495 JBrowse link
G TBX20 T-box transcription factor 20 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:46,891,706...46,946,899
Ensembl chr14:46,896,228...46,947,507 		JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:70,040,376...70,048,346
Ensembl chr 7:70,040,508...70,047,912 		JBrowse link
G TLL1 tolloid like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:61,818,794...61,945,065
Ensembl chr15:61,756,281...61,941,195 		JBrowse link
G TLL2 tolloid like 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr28:9,775,881...9,898,246
Ensembl chr28:9,778,886...9,898,644 		JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within ISO (PMID:7885472), (PMID:9362463) MGI PMID:7885472 PMID:9362463 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436 		JBrowse link
determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CER1 cerberus 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:35,155,568...35,159,085
Ensembl chr11:35,156,430...35,158,942 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:2,219,535...2,231,868
Ensembl chr30:2,222,898...2,225,418 		JBrowse link
G GREM2 gremlin 2, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:32,048,151...32,157,698
Ensembl chr 7:32,048,183...32,157,146 		JBrowse link
G NBL1 NBL1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:79,040,206...79,102,792
Ensembl chr 2:79,041,105...79,102,820 		JBrowse link
determination of ventral identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIDA axin interactor, dorsalization associated involved_in IBA GO_Central GO_REF:0000033 NCBI chr38:16,938,279...16,971,200
Ensembl chr38:16,939,556...16,971,200 		JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343 		JBrowse link
G AXIN2 axin 2 ISO RGD PMID:9566905 RGD:68736 NCBI chr 9:14,559,476...14,588,950
Ensembl chr 9:14,559,388...14,588,530 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923 		JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18985738) MGI PMID:18985738 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437 		JBrowse link
G MDFI MyoD family inhibitor involved_in ISO (PMID:11238923) UniProt PMID:11238923 NCBI chr12:10,324,499...10,339,699
Ensembl chr12:10,323,552...10,339,697 		JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G SENP2 SUMO specific peptidase 2 ISO RGD PMID:10944533 RGD:1299408 NCBI chr34:18,325,373...18,357,152
Ensembl chr34:18,325,553...18,356,192 		JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964 		JBrowse link
G VAX2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO (PMID:11830578)
(PMID:11830579)		 MGI PMID:11830578 PMID:11830579 NCBI chr10:69,252,926...69,262,225 JBrowse link
G WNT3 Wnt family member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:10,073,019...10,124,454
Ensembl chr 9:10,077,567...10,124,508 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G FKBP8 FKBP prolyl isomerase 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:44,494,856...44,504,084
Ensembl chr20:44,489,219...44,598,497 		JBrowse link
G FOXA1 forkhead box A1 acts_upstream_of_or_within ISO (PMID:23383217) MGI PMID:23383217 NCBI chr 8:16,072,629...16,083,105
Ensembl chr 8:16,079,140...16,083,807 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:23383217)
(PMID:18590716)
(PMID:9226455)		 MGI PMID:9226455 PMID:18590716 PMID:23383217 NCBI chr24:1,010,370...1,013,791
Ensembl chr24:1,010,651...1,013,072 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504941)
(PMID:17504940), (PMID:17504941)		 MGI PMID:17504940 PMID:17504941 NCBI chr 1:72,927,346...72,930,119
Ensembl chr 1:72,927,670...72,928,827 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GSC goosecoid homeobox acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:63,684,149...63,707,030
Ensembl chr 8:63,684,137...63,707,054 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within
involved_in		 ISO (PMID:18590716)
(PMID:21209331)
(PMID:18590716), (PMID:19286674)		 MGI
BHF-UCL		 PMID:18590716 PMID:19286674 PMID:21209331 NCBI chr11:20,988,516...21,044,151
Ensembl chr11:20,928,655...21,044,090 		JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chr16:19,509,038...19,514,378
Ensembl chr16:19,499,582...19,512,836 		JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:79,813,835...79,952,490
Ensembl chr 2:79,815,748...79,915,003 		JBrowse link
G PSEN1 presenilin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532 		JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chr 7:38,147,157...38,163,023
Ensembl chr 7:38,147,173...38,166,722 		JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662 		JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in ISO (PMID:7720556) UniProt PMID:7720556 NCBI chr12:24,388,530...24,438,956
Ensembl chr12:24,387,643...24,421,869 		JBrowse link
G RNF220 ring finger protein 220 acts_upstream_of_or_within ISO (PMID:30177510) MGI PMID:30177510 NCBI chr15:15,664,025...15,898,564
Ensembl chr15:15,664,876...15,891,748 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 IEA
ISO		 (PMID:21209331) Ensembl
BHF-UCL		 PMID:21209331 GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033 		JBrowse link
G TCTN1 tectonic family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:8,411,429...8,444,640
Ensembl chr26:8,407,105...8,437,027 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097 		JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412 		JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G GSX2 GS homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:46,640,172...46,642,405
Ensembl chr13:46,640,172...46,641,546 		JBrowse link
G NKX2-1 NK2 homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G PAX6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G SIX3 SIX homeobox 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:47,332,875...47,369,359
Ensembl chr10:47,332,888...47,343,635 		JBrowse link
G TTC21B tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO (PMID:19732765) MGI PMID:19732765 NCBI chr36:11,009,362...11,086,586
Ensembl chr36:11,010,296...11,086,674 		JBrowse link
negative regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDIT3 DNA damage inducible transcript 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:1,606,693...1,612,410
Ensembl chr10:1,606,693...1,611,303 		JBrowse link
G SOSTDC1 sclerostin domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:31,035,759...31,079,139
Ensembl chr14:31,022,766...31,026,737
Ensembl chr14:31,022,766...31,026,737 		JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPR161 G protein-coupled receptor 161 involved_in ISO (PMID:23332756) UniProt PMID:23332756 NCBI chr 7:30,364,999...30,411,038
Ensembl chr 7:30,366,068...30,407,268 		JBrowse link
positive regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:3,743,257...3,818,659
Ensembl chr36:3,744,163...3,818,652 		JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927 		JBrowse link
G MAPK8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (PMID:18316368) MGI PMID:18316368 NCBI chr28:323,361...410,367
Ensembl chr28:368,513...406,401 		JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:22689656) MGI PMID:22689656 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906 		JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:60,662,704...60,873,881
Ensembl chr 1:60,667,721...60,873,614 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19223390) MGI PMID:19223390 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097 		JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:73,115,560...73,213,823
Ensembl chr 3:73,137,250...73,221,512 		JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr28:14,992,989...15,115,499
Ensembl chr28:14,992,618...15,112,389 		JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr28:14,992,989...15,115,499
Ensembl chr28:14,992,618...15,112,389 		JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:17,255,770...17,264,776
Ensembl chr34:17,255,562...17,271,713 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:21761479) MGI PMID:21761479 NCBI chr 1:106,742,381...106,752,543
Ensembl chr 1:106,747,860...106,805,699 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (PMID:21209331) BHF-UCL PMID:21209331 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:21761479) MGI PMID:21761479 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266 		JBrowse link
G INTU inturned planar cell polarity protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:13,193,252...13,276,593
Ensembl chr19:13,164,245...13,276,496 		JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:16364285)
(PMID:15755804), (PMID:16364285)
(PMID:14603322)		 MGI PMID:14603322 PMID:15755804 PMID:16364285 NCBI chr12:24,388,530...24,438,956
Ensembl chr12:24,387,643...24,421,869 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr28:14,992,989...15,115,499
Ensembl chr28:14,992,618...15,112,389 		JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
G DLL4 delta like canonical Notch ligand 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:8,059,463...8,068,742
Ensembl chr30:8,059,512...8,067,940 		JBrowse link
G FOXN4 forkhead box N4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:17,730,638...17,757,173
Ensembl chr26:17,728,878...17,755,602 		JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-2 NK2 homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874 		JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBX1 developing brain homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr21:42,207,205...42,214,954
Ensembl chr21:42,208,346...42,212,415 		JBrowse link
G DMRT3 doublesex and mab-3 related transcription factor 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:89,798,215...89,813,140
Ensembl chr 1:89,798,100...89,812,328 		JBrowse link
G LHX3 LIM homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:49,248,555...49,254,128
Ensembl chr 9:49,248,621...49,254,118 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
G SOX1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:20844123) MGI PMID:20844123 NCBI chr22:59,902,113...59,903,820 JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMAD2 SMAD family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:43,696,883...43,778,063
Ensembl chr 7:43,700,445...43,769,983 		JBrowse link
G SMAD6 SMAD family member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:30,938,908...31,014,259
Ensembl chr30:30,937,849...31,014,583 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 22141
    multicellular organismal process 8214
      pattern specification process 497
        regionalization 451
          dorsal/ventral pattern formation 100
            determination of dorsal identity + 9
            determination of dorsal/ventral asymmetry + 10
            determination of ventral identity 1
            dorsal/ventral axis specification + 13
            dorsal/ventral neural tube patterning + 25
            dorsal/ventral pattern formation, imaginal disc + 0
            embryonic heart tube dorsal/ventral pattern formation 0
            forebrain dorsal/ventral pattern formation 7
            spinal cord dorsal/ventral patterning + 19
Path 2
Term Annotations click to browse term
  biological_process 22141
    developmental process 6924
      anatomical structure development 6488
        multicellular organism development 5248
          pattern specification process 497
            regionalization 451
              dorsal/ventral pattern formation 100
                determination of dorsal identity + 9
                determination of dorsal/ventral asymmetry + 10
                determination of ventral identity 1
                dorsal/ventral axis specification + 13
                dorsal/ventral neural tube patterning + 25
                dorsal/ventral pattern formation, imaginal disc + 0
                embryonic heart tube dorsal/ventral pattern formation 0
                forebrain dorsal/ventral pattern formation 7
                spinal cord dorsal/ventral patterning + 19
paths to the root