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ONTOLOGY REPORT - ANNOTATIONS


Term:dorsal/ventral pattern formation
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Accession:GO:0009953 term browser browse the term
Definition:The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
Synonyms:exact_synonym: dorsoventral pattern formation
 narrow_synonym: dorsal/ventral pattern specification



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dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (MGI:2449253|PMID:12645927) MGI PMID:12645927 MGI:2449253 NCBI chr 5:108,070,697...108,208,273
Ensembl chr 5:113,904,352...114,009,709
JBrowse link
G ARL13B ADP ribosylation factor like GTPase 13B acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr 3:91,044,332...91,121,686
Ensembl chr 3:97,725,136...97,799,932
JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3797993|PMID:18316368) MGI
Ensembl
PMID:18316368 GO_REF:0000107 MGI:3797993 Ensembl chr16:278,239...337,891 JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3574003|PMID:15673568) MGI
Ensembl
PMID:15673568 GO_REF:0000107 MGI:3574003 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912
JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3574003|PMID:15673568) MGI
Ensembl
PMID:15673568 GO_REF:0000107 MGI:3574003 NCBI chr 4:87,125,911...87,523,084
Ensembl chr 4:98,088,072...98,195,848
JBrowse link
G CHRD chordin acts_upstream_of_or_within ISO (MGI:2662951|PMID:12810603) MGI PMID:12810603 MGI:2662951 NCBI chr 3:181,417,140...181,460,236
Ensembl chr 3:189,898,856...189,908,573
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3529734|PMID:15708565) MGI
Ensembl
PMID:15708565 GO_REF:0000107 MGI:3529734 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G DISP1 dispatched RND transporter family member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3051703|PMID:15269168)
(MGI:3577662|PMID:15755804)
MGI
Ensembl
PMID:15269168 PMID:15755804 GO_REF:0000107 MGI:3051703 MGI:3577662 NCBI chr 1:198,488,047...198,679,013
Ensembl chr 1:203,628,338...203,692,218
JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3577662|PMID:15755804), (MGI:3588600|PMID:16061793)
(MGI:5441704|PMID:21552265)
(MGI:3610248|PMID:16229832)
MGI
Ensembl
PMID:15755804 PMID:16061793 PMID:16229832 PMID:21552265 GO_REF:0000107 MGI:3577662 MGI:3588600 MGI:3610248 MGI:5441704 NCBI chr11:98,051,788...98,425,676
Ensembl chr11:101,536,471...101,909,194
JBrowse link
G EDN1 endothelin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3043904|PMID:15110048) MGI
Ensembl
PMID:15110048 GO_REF:0000107 MGI:3043904 NCBI chr 6:12,076,312...12,142,861
Ensembl chr 6:12,462,718...12,503,545
JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within ISO (MGI:1194987|PMID:9362463), (MGI:81767|PMID:8684466) MGI PMID:8684466 PMID:9362463 MGI:1194987 MGI:81767 NCBI chr2B:5,798,557...5,804,368 JBrowse link
G FKBP8 FKBP prolyl isomerase 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3039989|PMID:15105374) MGI
Ensembl
PMID:15105374 GO_REF:0000107 MGI:3039989 NCBI chr19:18,009,505...18,021,772
Ensembl chr19:18,980,269...18,992,170
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr20:22,519,942...22,524,262 JBrowse link
G FOXG1 forkhead box G1 acts_upstream_of_or_within ISO (MGI:3581994|PMID:15893304)
(MGI:2679162|PMID:14566948)
MGI PMID:14566948 PMID:15893304 MGI:2679162 MGI:3581994 NCBI chr14:9,545,147...9,572,309 JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3710452|PMID:17504940) MGI PMID:17504940 MGI:3710452 NCBI chr 9:58,079,700...58,082,849
Ensembl chr 9:86,139,009...86,140,045
JBrowse link
G GLI1 GLI family zinc finger 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3617688|PMID:16342201) MGI
Ensembl
PMID:16342201 GO_REF:0000107 MGI:3617688 NCBI chr12:31,453,759...31,466,194
Ensembl chr12:31,710,057...31,722,473
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3617688|PMID:16342201) MGI
Ensembl
PMID:16342201 GO_REF:0000107 MGI:3617688 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2445272|PMID:12435629), (MGI:3624182|PMID:16571630)
(MGI:3028732|PMID:14723851)
MGI
Ensembl
InterPro
PMID:12435629 PMID:14723851 PMID:16571630 GO_REF:0000002 GO_REF:0000107 MGI:2445272 MGI:3028732 MGI:3624182 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G HHIP hedgehog interacting protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3511726|PMID:15576403) MGI
Ensembl
PMID:15576403 GO_REF:0000107 MGI:3511726 NCBI chr 4:136,989,818...137,085,407
Ensembl chr 4:148,651,597...148,744,619
JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2135652|PMID:11493536) MGI
Ensembl
PMID:11493536 GO_REF:0000107 MGI:2135652 NCBI chr 7:27,826,003...27,829,757
Ensembl chr 7:27,424,759...27,429,103
JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within ISO (MGI:1335668|PMID:10230789) MGI PMID:10230789 MGI:1335668 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789
JBrowse link
G HOXB2 homeobox B2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1335668|PMID:10230789) MGI
Ensembl
PMID:10230789 GO_REF:0000107 MGI:1335668 NCBI chr17:8,991,652...8,994,092
Ensembl chr17:9,176,313...9,178,713
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:2135652|PMID:11493536) MGI PMID:11493536 MGI:2135652 NCBI chr2B:63,386,806...63,398,777 JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2679893|PMID:14603322), (MGI:3577662|PMID:15755804), (MGI:5441704|PMID:21552265)
(MGI:3588600|PMID:16061793)
MGI
Ensembl
PMID:14603322 PMID:15755804 PMID:16061793 PMID:21552265 GO_REF:0000107 MGI:2679893 MGI:3577662 MGI:3588600 MGI:5441704 NCBI chr2A:27,448,139...27,492,302
Ensembl chr2A:27,536,534...27,580,406
JBrowse link
G IFT52 intraflagellar transport 52 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3579954|PMID:15930098) MGI
Ensembl
PMID:15930098 GO_REF:0000107 MGI:3579954 NCBI chr20:39,929,523...39,986,072
Ensembl chr20:41,023,517...41,080,500
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804), (MGI:3579954|PMID:15930098) MGI PMID:15755804 PMID:15930098 MGI:3577662 MGI:3579954 NCBI chr13:1,893,102...2,017,771
Ensembl chr13:20,206,471...20,331,204
JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr 5:128,112,636...128,154,443
Ensembl chr 5:134,274,352...134,315,431
JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1344734|PMID:10498685) MGI
Ensembl
PMID:10498685 GO_REF:0000107 MGI:1344734 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G LHX2 LIM homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1930361|PMID:11165475), (MGI:2679162|PMID:14566948) MGI
Ensembl
PMID:11165475 PMID:14566948 GO_REF:0000107 MGI:1930361 MGI:2679162 NCBI chr 9:95,132,445...95,154,130
Ensembl chr 9:123,655,845...123,676,796
JBrowse link
G LHX3 LIM homeobox 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3771226|PMID:18037398) MGI
Ensembl
PMID:18037398 GO_REF:0000107 MGI:3771226 NCBI chr 9:107,271,131...107,280,001
Ensembl chr 9:136,252,880...136,260,366
JBrowse link
G LMX1B LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:10767331) UniProt PMID:10767331 NCBI chr 9:97,730,850...97,820,554
Ensembl chr 9:126,240,722...126,322,420
JBrowse link
G LOC100990238 intraflagellar transport protein 122 homolog acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804)
(MGI:5441704|PMID:21552265)
MGI PMID:15755804 PMID:21552265 MGI:3577662 MGI:5441704 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117
JBrowse link
G LRP4 LDL receptor related protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3619629|PMID:16207730)
(MGI:3703100|PMID:17119023)
MGI
Ensembl
PMID:16207730 PMID:17119023 GO_REF:0000107 MGI:3619629 MGI:3703100 NCBI chr11:46,808,090...46,868,649
Ensembl chr11:47,366,321...47,411,105
JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092
JBrowse link
G NOTO notochord homeobox acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:64560|PMID:8155581) MGI
Ensembl
PMID:8155581 GO_REF:0000107 MGI:64560 NCBI chr2A:73,254,440...73,265,315
Ensembl chr2A:74,744,181...74,752,950
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2656991|PMID:12652306) MGI PMID:12652306 MGI:2656991 NCBI chr14:37,370,926...37,381,610
Ensembl chr14:55,641,349...55,651,012
JBrowse link
G OVOL2 ovo like zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618450|PMID:16423343) MGI
Ensembl
PMID:16423343 GO_REF:0000107 MGI:3618450 NCBI chr20:17,983,277...18,019,441
Ensembl chr20:17,962,123...17,994,486
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3512833|PMID:15548580)
(MGI:3581509|PMID:15878992)
MGI
Ensembl
PMID:15548580 PMID:15878992 GO_REF:0000107 MGI:3512833 MGI:3581509 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3511726|PMID:15576403) MGI
Ensembl
PMID:15576403 GO_REF:0000107 MGI:3511726 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5441704|PMID:21552265)
(MGI:3051703|PMID:15269168)
MGI
Ensembl
PMID:15269168 PMID:21552265 GO_REF:0000107 MGI:3051703 MGI:5441704 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (MGI:3624182|PMID:16571630)
(MGI:3577662|PMID:15755804)
MGI PMID:15755804 PMID:16571630 MGI:3577662 MGI:3624182 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048
JBrowse link
G SP8 Sp8 transcription factor acts_upstream_of_or_within ISO (MGI:2679409|PMID:14597661) MGI PMID:14597661 MGI:2679409 NCBI chr 7:21,456,649...21,463,844 JBrowse link
G TBX20 T-box transcription factor 20 acts_upstream_of_or_within ISO (MGI:3579960|PMID:15901664) MGI PMID:15901664 MGI:3579960 NCBI chr 7:35,855,969...35,878,533 JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (MGI:3697552|PMID:17082251) MGI PMID:17082251 MGI:3697552 NCBI chr18:10,819,015...10,830,282
Ensembl chr18:13,128,359...13,139,145
JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1194987|PMID:9362463), (MGI:71658|PMID:7885472) MGI
Ensembl
PMID:7885472 PMID:9362463 GO_REF:0000107 MGI:1194987 MGI:71658 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386
JBrowse link
BMP signaling pathway involved in spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:181,417,140...181,460,236
Ensembl chr 3:189,898,856...189,908,573
JBrowse link
determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CER1 cerberus 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:14,552,062...14,559,632
Ensembl chr 9:15,063,766...15,066,776
JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:9660951) BHF-UCL PMID:9660951 NCBI chr15:11,213,870...11,230,619 JBrowse link
G GREM2 gremlin 2, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:216,037,977...216,163,020
Ensembl chr 1:221,026,605...221,027,111
JBrowse link
G NBL1 NBL1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,599,121...18,613,305
Ensembl chr 1:19,641,279...19,656,431
JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1337175|PMID:10330403) MGI
Ensembl
PMID:10330403 GO_REF:0000107 MGI:1337175 Ensembl chr16:278,239...337,891 JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2670493|PMID:12923052) MGI
Ensembl
PMID:12923052 GO_REF:0000107 MGI:2670493 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2670493|PMID:12923052) MGI
Ensembl
PMID:12923052 GO_REF:0000107 MGI:2670493 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3823171|PMID:18985738) MGI PMID:18985738 MGI:3823171 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G MDFI MyoD family inhibitor involved_in ISO (MGI:4441142|PMID:11238923) UniProt PMID:11238923 MGI:4441142 NCBI chr 6:41,222,123...41,239,474
Ensembl chr 6:42,527,805...42,545,030
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1350715|PMID:10588713) MGI
Ensembl
PMID:10588713 GO_REF:0000107 MGI:1350715 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474
JBrowse link
G SENP2 SUMO specific peptidase 2 ISO RGD PMID:10944533 RGD:1299408 NCBI chr 3:182,606,922...182,655,518
Ensembl chr 3:191,086,488...191,129,572
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in ISO (PMID:9192640) UniProt PMID:9192640 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G VAX2 ventral anterior homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2157789|PMID:11830578)
(MGI:2157790|PMID:11830579)
MGI
Ensembl
PMID:11830578 PMID:11830579 GO_REF:0000107 MGI:2157789 MGI:2157790 NCBI chr2A:70,964,829...70,997,702
Ensembl chr2A:72,078,829...72,111,463
JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:10,685,160...10,741,402
Ensembl chr17:10,862,310...10,918,865
JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3046395|PMID:15218525) MGI
Ensembl
PMID:15218525 GO_REF:0000107 MGI:3046395 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752
JBrowse link
G FKBP8 FKBP prolyl isomerase 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3806189|PMID:18590716)
(MGI:3774974|PMID:18003640)
MGI
Ensembl
PMID:18003640 PMID:18590716 GO_REF:0000107 MGI:3774974 MGI:3806189 NCBI chr19:18,009,505...18,021,772
Ensembl chr19:18,980,269...18,992,170
JBrowse link
G FOXA1 forkhead box A1 acts_upstream_of_or_within ISO (MGI:5486225|PMID:23383217) MGI PMID:23383217 MGI:5486225 NCBI chr14:18,347,284...18,352,705 JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716)
(MGI:5486225|PMID:23383217)
(MGI:894511|PMID:9226455)
MGI PMID:9226455 PMID:18590716 PMID:23383217 MGI:3806189 MGI:5486225 MGI:894511 NCBI chr20:22,519,942...22,524,262 JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3710451|PMID:17504941)
(MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940)
MGI PMID:17504940 PMID:17504941 MGI:3710451 MGI:3710452 NCBI chr 9:58,079,700...58,082,849
Ensembl chr 9:86,139,009...86,140,045
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674)
(MGI:894564|PMID:9247260)
MGI
Ensembl
PMID:9247260 PMID:18590716 PMID:19286674 GO_REF:0000107 MGI:3806189 MGI:3841503 MGI:894564 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link
G GSC goosecoid homeobox acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:894511|PMID:9226455) MGI
Ensembl
PMID:9226455 GO_REF:0000107 MGI:894511 NCBI chr14:75,390,119...75,392,050
Ensembl chr14:94,718,269...94,720,404
JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within
involved_in
ISO (MGI:3806189|PMID:18590716)
(MGI:4888042|PMID:21209331)
(MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674)
MGI
BHF-UCL
PMID:18590716 PMID:19286674 PMID:21209331 MGI:3806189 MGI:3841503 MGI:4888042 NCBI chr 5:128,112,636...128,154,443
Ensembl chr 5:134,274,352...134,315,431
JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr 7:148,622,701...148,628,532 JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr 1:17,589,513...17,707,442
Ensembl chr 1:18,639,641...18,756,952
JBrowse link
G PSEN1 presenilin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1347695|PMID:10557208) MGI
Ensembl
PMID:10557208 GO_REF:0000107 MGI:1347695 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876
JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208) MGI PMID:10557208 MGI:1347695 NCBI chr 1:202,328,987...202,354,440
Ensembl chr 1:207,320,937...207,346,295
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1095757|PMID:9262482) MGI
Ensembl
PMID:9262482 GO_REF:0000107 MGI:1095757 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453
JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in ISO (MGI:69552|PMID:7720556) UniProt PMID:7720556 MGI:69552 NCBI chr 6:56,744,948...56,780,187
Ensembl chr 6:58,375,559...58,411,107
JBrowse link
G RNF220 ring finger protein 220 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6220747|PMID:30177510) MGI
Ensembl
PMID:30177510 GO_REF:0000107 MGI:6220747 NCBI chr 1:43,707,764...43,954,197
Ensembl chr 1:45,083,499...45,319,721
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3710017|PMID:17442700), (MGI:3806189|PMID:18590716)
(MGI:3710451|PMID:17504941)
MGI
Ensembl
PMID:17442700 PMID:17504941 PMID:18590716 GO_REF:0000107 MGI:3710017 MGI:3710451 MGI:3806189 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048
JBrowse link
G TCTN1 tectonic family member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3610767|PMID:16357211) MGI
Ensembl
PMID:16357211 GO_REF:0000107 MGI:3610767 NCBI chr12:108,182,496...108,232,202
Ensembl chr12:111,577,755...111,610,754
JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3841503|PMID:19286674) MGI
Ensembl
PMID:19286674 GO_REF:0000107 MGI:3841503 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278
JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:64780|PMID:8299937) MGI
Ensembl
PMID:8299937 GO_REF:0000107 MGI:64780 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469
JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624179|PMID:16613831) MGI
Ensembl
PMID:16613831 GO_REF:0000107 MGI:3624179 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1352305|PMID:10625551) MGI
Ensembl
PMID:10625551 GO_REF:0000107 MGI:1352305 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G GSX2 GS homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1926244|PMID:11060228), (MGI:1928687|PMID:11124115), (MGI:3838261|PMID:18701439) MGI
Ensembl
PMID:11060228 PMID:11124115 PMID:18701439 GO_REF:0000107 MGI:1926244 MGI:1928687 MGI:3838261 NCBI chr 4:69,837,643...69,840,101
Ensembl chr 4:76,397,180...76,399,715
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1928687|PMID:11124115)
(MGI:1913185|PMID:11050125), (MGI:3838261|PMID:18701439), (MGI:5662366|PMID:24528677)
MGI
Ensembl
PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 GO_REF:0000107 MGI:1913185 MGI:1928687 MGI:3838261 MGI:5662366 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474
JBrowse link
G SIX3 SIX homeobox 3 involved_in ISO (PMID:18791198) UniProt PMID:18791198 NCBI chr2A:45,038,634...45,072,867 JBrowse link
G TTC21B tetratricopeptide repeat domain 21B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4367927|PMID:19732765) MGI
Ensembl
PMID:19732765 GO_REF:0000107 MGI:4367927 NCBI chr2B:53,140,199...53,220,535
Ensembl chr2B:170,616,444...170,699,471
JBrowse link
negative regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDIT3 DNA damage inducible transcript 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:31,406,332...31,410,293
Ensembl chr12:31,664,743...31,668,701
JBrowse link
G SOSTDC1 sclerostin domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:17,116,828...17,121,142
Ensembl chr 7:16,443,703...16,448,076
JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr 9:59,114,640...59,146,438
Ensembl chr 9:87,186,151...87,216,537
JBrowse link
G GPR161 G protein-coupled receptor 161 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:143,566,775...143,625,357
Ensembl chr 1:147,299,350...147,350,451
JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5308523|PMID:22007132) MGI
Ensembl
PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr19:13,657,344...13,683,864
Ensembl chr19:14,385,191...14,406,205
JBrowse link
G PRKACB protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5308523|PMID:22007132) MGI
Ensembl
PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr 1:116,625,640...116,786,396
Ensembl chr 1:85,487,681...85,644,253
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4355593|PMID:19684112) MGI
Ensembl
PMID:19684112 GO_REF:0000107 MGI:4355593 NCBI chr10:99,107,516...99,231,761
Ensembl chr10:102,571,886...102,696,472
JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chr2B:125,558,537...125,637,733
Ensembl chr2B:244,405,992...244,481,785
JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3844764|PMID:19334287) MGI
Ensembl
PMID:19334287 GO_REF:0000107 MGI:3844764 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278
JBrowse link
negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100990238 intraflagellar transport protein 122 homolog involved_in ISO (MGI:4888042|PMID:21209331) BHF-UCL PMID:21209331 MGI:4888042 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117
JBrowse link
G RFX4 regulatory factor X4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5430880|PMID:19887680) MGI
Ensembl
PMID:19887680 GO_REF:0000107 MGI:5430880 NCBI chr12:104,152,816...104,330,383
Ensembl chr12:107,550,254...107,724,623
JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3841503|PMID:19286674) MGI
Ensembl
PMID:19286674 GO_REF:0000107 MGI:3841503 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278
JBrowse link
negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 ISO RGD PMID:9566905 RGD:68736 NCBI chr17:59,476,336...59,509,358
Ensembl chr17:64,688,416...64,720,086
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in ISO (PMID:9192640) UniProt PMID:9192640 NCBI chr 8:40,507,027...40,555,053 JBrowse link
positive regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:44,994,175...45,133,490
Ensembl chr2B:162,234,823...162,297,805
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3797993|PMID:18316368) MGI
Ensembl
PMID:18316368 GO_REF:0000107 MGI:3797993 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G MAPK8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (MGI:3797993|PMID:18316368) MGI PMID:18316368 MGI:3797993 NCBI chr10:45,806,748...45,936,362 JBrowse link
positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GORAB golgin, RAB6 interacting acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5766823|PMID:26967474) MGI
Ensembl
PMID:26967474 GO_REF:0000107 MGI:5766823 NCBI chr 1:146,020,446...146,042,334
Ensembl chr 1:149,736,641...149,758,010
JBrowse link
regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr 9:59,114,640...59,146,438
Ensembl chr 9:87,186,151...87,216,537
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5912686|PMID:28817564) MGI
Ensembl
PMID:28817564 GO_REF:0000107 MGI:5912686 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5912686|PMID:28817564) MGI
Ensembl
PMID:28817564 GO_REF:0000107 MGI:5912686 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G MKS1 MKS transition zone complex subunit 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4868517|PMID:21045211) MGI
Ensembl
PMID:21045211 GO_REF:0000107 MGI:4868517 NCBI chr17:52,281,443...52,295,919
Ensembl chr17:57,137,254...57,151,328
JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709667|PMID:17395647)
(MGI:4439200|PMID:20159594)
MGI
Ensembl
PMID:17395647 PMID:20159594 GO_REF:0000107 MGI:3709667 MGI:4439200 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709667|PMID:17395647)
(MGI:4439200|PMID:20159594)
MGI
Ensembl
PMID:17395647 PMID:20159594 GO_REF:0000107 MGI:3709667 MGI:4439200 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G LOC100990238 intraflagellar transport protein 122 homolog acts_upstream_of_or_within ISO (MGI:5428054|PMID:22689656) MGI PMID:22689656 MGI:5428054 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4355593|PMID:19684112) MGI
Ensembl
PMID:19684112 GO_REF:0000107 MGI:4355593 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453
JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4439200|PMID:20159594) MGI
Ensembl
PMID:20159594 GO_REF:0000107 MGI:4439200 NCBI chr 6:118,884,928...119,139,138
Ensembl chr 6:123,022,008...123,273,810
JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3841513|PMID:19223390) MGI
Ensembl
PMID:19223390 GO_REF:0000107 MGI:3841513 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278
JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5428054|PMID:22689656) MGI
Ensembl
PMID:22689656 GO_REF:0000107 MGI:5428054 NCBI chr 4:33,511,283...33,616,946
Ensembl chr 4:39,365,276...39,462,903
JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3051712|PMID:15215207) MGI
Ensembl
PMID:15215207 GO_REF:0000107 MGI:3051712 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3051712|PMID:15215207) MGI
Ensembl
PMID:15215207 GO_REF:0000107 MGI:3051712 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4355593|PMID:19684112) MGI
Ensembl
PMID:19684112 GO_REF:0000107 MGI:4355593 NCBI chr10:99,107,516...99,231,761
Ensembl chr10:102,571,886...102,696,472
JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3051712|PMID:15215207) MGI
Ensembl
PMID:15215207 GO_REF:0000107 MGI:3051712 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3051712|PMID:15215207) MGI
Ensembl
PMID:15215207 GO_REF:0000107 MGI:3051712 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4355593|PMID:19684112) MGI
Ensembl
PMID:19684112 GO_REF:0000107 MGI:4355593 NCBI chr10:99,107,516...99,231,761
Ensembl chr10:102,571,886...102,696,472
JBrowse link
smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
ISO (MGI:4888042|PMID:21209331)
(MGI:3841503|PMID:19286674)
CACAO
MGI
PMID:19286674 PMID:21209331 MGI:3841503 MGI:4888042 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048
JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:5052192|PMID:21761479) MGI PMID:21761479 MGI:5052192 NCBI chr19:46,819,833...46,826,235
Ensembl chr19:55,736,325...55,742,589
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3051712|PMID:15215207)
(MGI:3612806|PMID:16364285)
(MGI:2154468|PMID:11748151)
MGI
Ensembl
PMID:11748151 PMID:15215207 PMID:16364285 GO_REF:0000107 MGI:2154468 MGI:3051712 MGI:3612806 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3051712|PMID:15215207)
(MGI:3612806|PMID:16364285)
MGI
Ensembl
PMID:15215207 PMID:16364285 GO_REF:0000107 MGI:3051712 MGI:3612806 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:5052192|PMID:21761479) MGI PMID:21761479 MGI:5052192 NCBI chr13:1,893,102...2,017,771
Ensembl chr13:20,206,471...20,331,204
JBrowse link
G INTU inturned planar cell polarity protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5052192|PMID:21761479) MGI
Ensembl
PMID:21761479 GO_REF:0000107 MGI:5052192 NCBI chr 4:119,793,245...119,890,949
Ensembl chr 4:131,109,733...131,186,590
JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (MGI:3612806|PMID:16364285)
(MGI:3577662|PMID:15755804), (MGI:3612806|PMID:16364285)
(MGI:2679893|PMID:14603322)
MGI PMID:14603322 PMID:15755804 PMID:16364285 MGI:2679893 MGI:3577662 MGI:3612806 NCBI chr 6:56,744,948...56,780,187
Ensembl chr 6:58,375,559...58,411,107
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154468|PMID:11748151)
PMID:9230312
MGI
Ensembl
PMID:9230312 PMID:11748151 GO_REF:0000107 MGI:2154468 RGD:8553789 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3616741|PMID:16459298) MGI
Ensembl
PMID:16459298 GO_REF:0000107 MGI:3616741 NCBI chr10:99,107,516...99,231,761
Ensembl chr10:102,571,886...102,696,472
JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:100,536,895...100,539,737
Ensembl chr12:103,932,302...103,932,999
JBrowse link
G DLL4 delta like canonical Notch ligand 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,871,584...19,881,817
Ensembl chr15:38,121,574...38,129,471
JBrowse link
G FOXN4 forkhead box N4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:106,855,308...106,886,508
Ensembl chr12:110,251,449...110,280,025
JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-2 NK2 homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1334824|PMID:10217145) MGI
Ensembl
PMID:10217145 GO_REF:0000107 MGI:1334824 NCBI chr20:21,468,872...21,480,627
Ensembl chr20:21,429,401...21,432,492
JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBX1 developing brain homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2136554|PMID:11239429) MGI
Ensembl
PMID:11239429 GO_REF:0000107 MGI:2136554 NCBI chr11:20,180,704...20,185,164
Ensembl chr11:20,092,540...20,097,727
JBrowse link
G DMRT3 doublesex and mab-3 related transcription factor 3 acts_upstream_of_or_within ISO (MGI:5435948|PMID:22932389) MGI PMID:22932389 MGI:5435948 NCBI chr 9:786,402...801,114 JBrowse link
G LHX3 LIM homeobox 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4356383|PMID:19666821) MGI
Ensembl
PMID:19666821 GO_REF:0000107 MGI:4356383 NCBI chr 9:107,271,131...107,280,001
Ensembl chr 9:136,252,880...136,260,366
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G SOX1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:4834949|PMID:20844123) MGI PMID:20844123 MGI:4834949 NCBI chr13:93,023,958...93,269,467 JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMAD2 SMAD family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:41,213,001...41,309,902
Ensembl chr18:44,580,905...44,668,530
JBrowse link
G SMAD6 SMAD family member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:45,648,709...45,728,821
Ensembl chr15:63,923,379...64,001,154
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15230
    multicellular organismal process 7156
      pattern specification process 462
        regionalization 367
          dorsal/ventral pattern formation 98
            determination of dorsal identity + 9
            determination of dorsal/ventral asymmetry + 9
            determination of ventral identity 0
            dorsal/ventral axis specification + 13
            dorsal/ventral neural tube patterning + 32
            dorsal/ventral pattern formation, imaginal disc + 0
            embryonic heart tube dorsal/ventral pattern formation 0
            forebrain dorsal/ventral pattern formation 6
            spinal cord dorsal/ventral patterning + 21
Path 2
Term Annotations click to browse term
  biological_process 15230
    developmental process 6200
      anatomical structure development 5768
        multicellular organism development 5268
          pattern specification process 462
            regionalization 367
              dorsal/ventral pattern formation 98
                determination of dorsal identity + 9
                determination of dorsal/ventral asymmetry + 9
                determination of ventral identity 0
                dorsal/ventral axis specification + 13
                dorsal/ventral neural tube patterning + 32
                dorsal/ventral pattern formation, imaginal disc + 0
                embryonic heart tube dorsal/ventral pattern formation 0
                forebrain dorsal/ventral pattern formation 6
                spinal cord dorsal/ventral patterning + 21
paths to the root