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ONTOLOGY REPORT - ANNOTATIONS


Term:anterior/posterior pattern specification
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Accession:GO:0009952 term browser browse the term
Definition:The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
Synonyms:related_synonym: anterior/posterior pattern formation


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anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within ISO (MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118) MGI PMID:10452853 PMID:16991118 MGI:1344152 MGI:3689276 NCBI chrNW_004936469:29,195,329...29,273,237 JBrowse link
G Acvr2b activin A receptor type 2B involved_in
acts_upstream_of_or_within
ISO (PMID:9916847)
(MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118)
(MGI:3689276|PMID:16991118), (MGI:3695190|PMID:16845371), (MGI:894948|PMID:9242489)
(MGI:3695190|PMID:16845371)
(MGI:3525050|PMID:15542835)
HGNC-UCL
MGI
PMID:9242489 PMID:9916847 PMID:10452853 PMID:15542835 PMID:16845371 PMID:16991118 MGI:1344152 MGI:3525050 MGI:3689276 MGI:3695190 MGI:894948 NCBI chrNW_004936473:27,816,366...27,822,555 JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (MGI:3703483|PMID:17067568)
(MGI:3530707|PMID:15652703), (MGI:3578600|PMID:15872003)
(MGI:3612223|PMID:16368932)
MGI PMID:15652703 PMID:15872003 PMID:16368932 PMID:17067568 MGI:3530707 MGI:3578600 MGI:3612223 MGI:3703483 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
G Alx1 ALX homeobox 1 acts_upstream_of_or_within ISO (MGI:1314705|PMID:9847249) MGI PMID:9847249 MGI:1314705 NCBI chrNW_004936507:2,775,752...2,797,065 JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (MGI:1098911|PMID:9374397), (MGI:1314705|PMID:9847249)
(MGI:1314705|PMID:9847249)
MGI PMID:9374397 PMID:9847249 MGI:1098911 MGI:1314705 NCBI chrNW_004936562:4,316,550...4,326,022 JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (MGI:2449253|PMID:12645927) MGI PMID:12645927 MGI:2449253 NCBI chrNW_004936531:6,899,580...7,019,016 JBrowse link
G Arc activity regulated cytoskeleton associated protein acts_upstream_of_or_within ISO (MGI:1355000|PMID:10727859) MGI PMID:10727859 MGI:1355000 NCBI chrNW_004936470:9,185,145...9,188,260 JBrowse link
G Barx1 BARX homeobox 1 acts_upstream_of_or_within ISO (MGI:3766872|PMID:17855428) MGI PMID:17855428 MGI:3766872 NCBI chrNW_004937000:88,529...96,794 JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chrNW_004936804:52,435...115,289 JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within ISO (MGI:3525050|PMID:15542835)
(MGI:1855789|PMID:10772805)
MGI PMID:10772805 PMID:15542835 MGI:1855789 MGI:3525050 NCBI chrNW_004936726:1,543,263...1,711,422 JBrowse link
G Bptf bromodomain PHD finger transcription factor acts_upstream_of_or_within ISO (MGI:3840601|PMID:18974875)
(MGI:3821803|PMID:18794365)
MGI PMID:18794365 PMID:18974875 MGI:3821803 MGI:3840601 NCBI chrNW_004936541:5,261,899...5,396,930 JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (MGI:3525050|PMID:15542835) MGI PMID:15542835 MGI:3525050 NCBI chrNW_004936567:1,310,525...1,314,469 JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (MGI:4422144|PMID:19754878) MGI PMID:19754878 MGI:4422144 NCBI chrNW_004936572:6,176,267...6,268,885 JBrowse link
G Cdx1 caudal type homeobox 1 acts_upstream_of_or_within ISO (MGI:2154839|PMID:11784046), (MGI:77274|PMID:7585967) MGI PMID:7585967 PMID:11784046 MGI:2154839 MGI:77274 NCBI chrNW_004936504:4,736,621...4,752,354 JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within ISO (MGI:4398801|PMID:19853565) MGI PMID:19853565 MGI:4398801 NCBI chrNW_004936472:23,137,936...23,141,205 JBrowse link
G Cdx4 caudal type homeobox 4 acts_upstream_of_or_within ISO (MGI:4398801|PMID:19853565) MGI PMID:19853565 MGI:4398801 NCBI chrNW_004936683:297,112...305,506 JBrowse link
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO (MGI:3835694|PMID:18849982)
(MGI:4429791|PMID:19357712)
MGI PMID:18849982 PMID:19357712 MGI:3835694 MGI:4429791 NCBI chrNW_004936629:3,453,384...3,570,250 JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (MGI:1197794|PMID:9501024) MGI PMID:9501024 MGI:1197794 NCBI chrNW_004936539:8,321,432...8,323,909 JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO (MGI:3614586|PMID:16399080) MGI PMID:16399080 MGI:3614586 NCBI chrNW_004936619:2,447,686...2,479,589 JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO (MGI:2386059|PMID:12196586)
(MGI:3578670|PMID:15917450)
MGI PMID:12196586 PMID:15917450 MGI:2386059 MGI:3578670 NCBI chrNW_004936486:7,313,689...7,319,971 JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chrNW_004936620:2,966,341...2,969,349 JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO (MGI:1934969|PMID:11358868) MGI PMID:11358868 MGI:1934969 NCBI chrNW_004936470:7,789,486...7,791,067 JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4367921|PMID:19877275) MGI PMID:19877275 MGI:4367921 NCBI chrNW_004936664:3,596,764...3,601,676 JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO (MGI:5509072|PMID:23918385)
(MGI:1339513|PMID:10391213)
MGI PMID:10391213 PMID:23918385 MGI:1339513 MGI:5509072 NCBI chrNW_004936646:215,101...227,296 JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:5439039|PMID:22841643) MGI PMID:22841643 MGI:5439039 NCBI chrNW_004936469:49,616,552...49,788,760 JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:5439039|PMID:22841643)
(MGI:3053244|PMID:15315762)
MGI PMID:15315762 PMID:22841643 MGI:3053244 MGI:5439039 NCBI chrNW_004936478:17,129,922...17,403,630 JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 acts_upstream_of_or_within ISO (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 NCBI chrNW_004936598:3,961,051...3,978,791 JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO (MGI:3777521|PMID:16936074) UniProt PMID:16936074 MGI:3777521 NCBI chrNW_004936601:2,137,490...2,143,797 JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 acts_upstream_of_or_within ISO (MGI:3619785|PMID:16537918) MGI PMID:16537918 MGI:3619785 NCBI chrNW_004936690:2,293,740...2,353,450 JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 acts_upstream_of_or_within ISO (MGI:3619785|PMID:16537918) MGI PMID:16537918 MGI:3619785 NCBI chrNW_004936592:3,800,619...3,934,347 JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3578600|PMID:15872003) MGI PMID:15872003 MGI:3578600 NCBI chrNW_004936490:649,551...702,448 JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO (MGI:1346308|PMID:10529420)
(MGI:3055618|PMID:15367676)
MGI PMID:10529420 PMID:15367676 MGI:1346308 MGI:3055618 NCBI chrNW_004936478:3,721,662...3,724,471 JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chrNW_004936478:3,798,679...3,802,007 JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chrNW_004936478:3,809,288...3,813,014 JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:1098901 NCBI chrNW_004936478:3,729,079...3,731,353 JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO (MGI:1195045|PMID:9441667)
(MGI:67616|PMID:7913519)
MGI PMID:7913519 PMID:9441667 MGI:1195045 MGI:67616 NCBI chrNW_004936478:3,735,509...3,767,899 JBrowse link
G Hoxa4 homeobox A4 acts_upstream_of_or_within ISO (MGI:74948|PMID:7628700)
(MGI:67413|PMID:7918106)
MGI PMID:7628700 PMID:7918106 MGI:67413 MGI:74948 NCBI chrNW_004936478:3,756,289...3,758,020 JBrowse link
G Hoxa5 homeobox A5 acts_upstream_of_or_within ISO (MGI:3720535|PMID:17626057)
(MGI:1203259|PMID:9603431), (MGI:63693|PMID:7901120)
(MGI:3723390|PMID:17417799)
MGI PMID:7901120 PMID:9603431 PMID:17417799 PMID:17626057 MGI:1203259 MGI:3720535 MGI:3723390 MGI:63693 NCBI chrNW_004936478:3,768,757...3,771,850 JBrowse link
G Hoxa6 homeobox A6 acts_upstream_of_or_within ISO (MGI:67413|PMID:7918106)
(MGI:3720535|PMID:17626057)
MGI PMID:7918106 PMID:17626057 MGI:3720535 MGI:67413 NCBI chrNW_004936478:3,773,131...3,775,461 JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within ISO (MGI:1313067|PMID:9784603) MGI PMID:9784603 MGI:1313067 NCBI chrNW_004936478:3,782,476...3,784,361 JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within ISO (MGI:85243|PMID:9013929)
(MGI:3720535|PMID:17626057)
(MGI:78984|PMID:8625797)
MGI PMID:8625797 PMID:9013929 PMID:17626057 MGI:3720535 MGI:78984 MGI:85243 NCBI chrNW_004936478:3,789,961...3,793,116 JBrowse link
G Hoxb1 homeobox B1 acts_upstream_of_or_within ISO (MGI:1859107|PMID:10885747)
(MGI:1346308|PMID:10529420)
MGI PMID:10529420 PMID:10885747 MGI:1346308 MGI:1859107 NCBI chrNW_004936490:12,853,983...12,855,428 JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO (MGI:85074|PMID:9012503)
(MGI:1859107|PMID:10885747)
MGI PMID:9012503 PMID:10885747 MGI:1859107 MGI:85074 NCBI chrNW_004936490:12,841,286...12,843,782 JBrowse link
G Hoxb3 homeobox B3 acts_upstream_of_or_within ISO (MGI:1195045|PMID:9441667)
(MGI:1859107|PMID:10885747)
MGI PMID:9441667 PMID:10885747 MGI:1195045 MGI:1859107 NCBI chrNW_004936490:12,834,240...12,836,812 JBrowse link
G Hoxb4 homeobox B4 acts_upstream_of_or_within ISO (MGI:74948|PMID:7628700)
(MGI:85074|PMID:9012503)
(MGI:1859107|PMID:10885747)
MGI PMID:7628700 PMID:9012503 PMID:10885747 MGI:1859107 MGI:74948 MGI:85074 NCBI chrNW_004936490:12,808,679...12,811,688 JBrowse link
G Hoxb5 homeobox B5 acts_upstream_of_or_within ISO (MGI:70296|PMID:7828847)
(MGI:1859107|PMID:10885747)
(MGI:3720535|PMID:17626057)
MGI PMID:7828847 PMID:10885747 PMID:17626057 MGI:1859107 MGI:3720535 MGI:70296 NCBI chrNW_004936490:12,793,485...12,796,219 JBrowse link
G Hoxb6 homeobox B6 acts_upstream_of_or_within ISO (MGI:70296|PMID:7828847)
(MGI:1859107|PMID:10885747)
(MGI:3720535|PMID:17626057)
MGI PMID:7828847 PMID:10885747 PMID:17626057 MGI:1859107 MGI:3720535 MGI:70296 NCBI chrNW_004936490:12,782,864...12,791,743 JBrowse link
G Hoxb7 homeobox B7 acts_upstream_of_or_within ISO (MGI:1313067|PMID:9784603)
(MGI:1859107|PMID:10885747)
MGI PMID:9784603 PMID:10885747 MGI:1313067 MGI:1859107 NCBI chrNW_004936490:12,777,005...12,780,515 JBrowse link
G Hoxb8 homeobox B8 acts_upstream_of_or_within ISO (MGI:2681074|PMID:14623233)
(MGI:1349283|PMID:10559485), (MGI:1933164|PMID:11311170)
(MGI:1933164|PMID:11311170)
(MGI:1859107|PMID:10885747)
MGI PMID:10559485 PMID:10885747 PMID:11311170 PMID:14623233 MGI:1349283 MGI:1859107 MGI:1933164 MGI:2681074 NCBI chrNW_004936490:12,773,295...12,774,832 JBrowse link
G Hoxb9 homeobox B9 acts_upstream_of_or_within ISO (MGI:1859107|PMID:10885747)
(MGI:85243|PMID:9013929)
(MGI:3720535|PMID:17626057)
MGI PMID:9013929 PMID:10885747 PMID:17626057 MGI:1859107 MGI:3720535 MGI:85243 NCBI chrNW_004936490:12,761,668...12,765,658 JBrowse link
G Hoxc10 homeobox C10 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chrNW_004936512:11,207,173...11,212,365 JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chrNW_004936512:11,194,876...11,197,316 JBrowse link
G Hoxc13 homeobox C13 acts_upstream_of_or_within ISO (MGI:1195385|PMID:9420327) MGI PMID:9420327 MGI:1195385 NCBI chrNW_004936512:11,160,343...11,166,616 JBrowse link
G Hoxc4 homeobox C4 acts_upstream_of_or_within ISO (MGI:81673|PMID:8660891)
(MGI:79121|PMID:8626021)
MGI PMID:8626021 PMID:8660891 MGI:79121 MGI:81673 NCBI chrNW_004936512:11,238,905...11,277,531 JBrowse link
G Hoxc5 homeobox C5 acts_upstream_of_or_within ISO (MGI:3720535|PMID:17626057) MGI PMID:17626057 MGI:3720535 NCBI chrNW_004936512:11,254,959...11,258,702 JBrowse link
G Hoxc6 homeobox C6 acts_upstream_of_or_within ISO (MGI:3720535|PMID:17626057) MGI PMID:17626057 MGI:3720535 NCBI chrNW_004936512:11,238,905...11,252,750 JBrowse link
G Hoxc8 homeobox C8 acts_upstream_of_or_within ISO (MGI:1933164|PMID:11311170) MGI PMID:11311170 MGI:1933164 NCBI chrNW_004936512:11,231,467...11,234,515 JBrowse link
G Hoxc9 homeobox C9 acts_upstream_of_or_within ISO (MGI:73980|PMID:7547473)
(MGI:3720535|PMID:17626057)
MGI PMID:7547473 PMID:17626057 MGI:3720535 MGI:73980 NCBI chrNW_004936512:11,222,120...11,225,455 JBrowse link
G Hoxd10 homeobox D10 acts_upstream_of_or_within ISO (MGI:1350864|PMID:10642795)
(MGI:2667742|PMID:12869760)
MGI PMID:10642795 PMID:12869760 MGI:1350864 MGI:2667742 NCBI chrNW_004936509:5,603,661...5,606,850 JBrowse link
G Hoxd13 homeobox D13 acts_upstream_of_or_within ISO (MGI:63627|PMID:8106170) MGI PMID:8106170 MGI:63627 NCBI chrNW_004936509:5,579,846...5,581,651 JBrowse link
G Hoxd3 homeobox D3 acts_upstream_of_or_within ISO (MGI:1195045|PMID:9441667)
(MGI:63793|PMID:7910549), (MGI:67616|PMID:7913519)
(MGI:67616|PMID:7913519)
MGI PMID:7910549 PMID:7913519 PMID:9441667 MGI:1195045 MGI:63793 MGI:67616 NCBI chrNW_004936509:5,654,737...5,659,937 JBrowse link
G Hoxd4 homeobox D4 acts_upstream_of_or_within ISO (MGI:72992|PMID:7750651)
(MGI:74948|PMID:7628700)
MGI PMID:7628700 PMID:7750651 MGI:72992 MGI:74948 NCBI chrNW_004936509:5,637,600...5,640,335 JBrowse link
G Hoxd8 homeobox D8 acts_upstream_of_or_within ISO (MGI:1933164|PMID:11311170) MGI PMID:11311170 MGI:1933164 NCBI chrNW_004936509:5,616,836...5,619,802 JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within ISO (MGI:78984|PMID:8625797)
(MGI:3720535|PMID:17626057)
(MGI:1350864|PMID:10642795)
MGI PMID:8625797 PMID:10642795 PMID:17626057 MGI:1350864 MGI:3720535 MGI:78984 NCBI chrNW_004936509:5,609,744...5,611,943 JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:2660994|PMID:12701101)
(MGI:3579954|PMID:15930098)
MGI PMID:12701101 PMID:15930098 MGI:2660994 MGI:3579954 NCBI chrNW_004936720:1,041,216...1,168,725 JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within ISO (MGI:1336552|PMID:10220415) MGI PMID:10220415 MGI:1336552 NCBI chrNW_004936647:2,461,017...2,502,550 JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO (MGI:3625774|PMID:16618927)
(MGI:3530206|PMID:15741318)
MGI PMID:15741318 PMID:16618927 MGI:3530206 MGI:3625774 NCBI chrNW_004936542:3,480,071...3,566,823 JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G LOC101966195 huntingtin acts_upstream_of_or_within ISO (MGI:3609520|PMID:16109169) MGI PMID:16109169 MGI:3609520 NCBI chrNW_004936477:20,443,101...20,577,167 JBrowse link
G LOC101977861 cytochrome P450 26A1 acts_upstream_of_or_within ISO (MGI:3703483|PMID:17067568) MGI PMID:17067568 MGI:3703483 NCBI chrNW_004936601:1,810,572...1,815,927 JBrowse link
G LOC101978131 cytochrome P450 26C1 acts_upstream_of_or_within ISO (MGI:3703483|PMID:17067568) MGI PMID:17067568 MGI:3703483 NCBI chrNW_004936601:1,818,037...1,828,400 JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (MGI:3045836|PMID:15142971) MGI PMID:15142971 MGI:3045836 NCBI chrNW_004936599:1,746,309...1,814,471 JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512)
(MGI:3603992|PMID:16126904)
(MGI:3045836|PMID:15142971)
MGI PMID:15142971 PMID:16126904 PMID:19795512 MGI:3045836 MGI:3603992 MGI:4413372 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Mllt3 MLLT3 super elongation complex subunit acts_upstream_of_or_within ISO (MGI:2387913|PMID:12242306) MGI PMID:12242306 MGI:2387913 NCBI chrNW_004936652:2,040,685...2,309,059 JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chrNW_004936477:17,406,551...17,413,615 JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chrNW_004936609:1,216,436...1,221,528 JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO (MGI:3613103|PMID:16368089) MGI PMID:16368089 MGI:3613103 NCBI chrNW_004936509:10,421,821...10,425,927 JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:3056019|PMID:15302604)
(MGI:2136068|PMID:11418863), (MGI:3042338|PMID:15004567)
(MGI:3624254|PMID:16496285)
(MGI:2155575|PMID:11311163)
MGI PMID:11311163 PMID:11418863 PMID:15004567 PMID:15302604 PMID:16496285 MGI:2136068 MGI:2155575 MGI:3042338 MGI:3056019 MGI:3624254 NCBI chrNW_004936521:8,171,146...8,178,802 JBrowse link
G Nr2f2 nuclear receptor subfamily 2 group F member 2 acts_upstream_of_or_within ISO (MGI:3578605|PMID:15829524) MGI PMID:15829524 MGI:3578605 NCBI chrNW_004936483:6,886,447...6,900,986 JBrowse link
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within ISO (MGI:3039992|PMID:15105370) MGI PMID:15105370 MGI:3039992 NCBI chrNW_004936491:8,181,600...8,188,600 JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:1197794|PMID:9501024)
(MGI:2136711|PMID:11412024)
(MGI:2656991|PMID:12652306)
MGI PMID:9501024 PMID:11412024 PMID:12652306 MGI:1197794 MGI:2136711 MGI:2656991 NCBI chrNW_004936495:1,433,124...1,449,409 JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO (MGI:2386059|PMID:12196586)
(MGI:3578670|PMID:15917450)
MGI PMID:12196586 PMID:15917450 MGI:2386059 MGI:3578670 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO (MGI:2151355|PMID:11566859) MGI PMID:11566859 MGI:2151355 NCBI chrNW_004936481:20,200,236...20,440,623 JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within ISO (MGI:3530206|PMID:15741318)
(MGI:80640|PMID:8625838)
MGI PMID:8625838 PMID:15741318 MGI:3530206 MGI:80640 NCBI chrNW_004936490:14,139,125...14,150,377 JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639)
(MGI:3795695|PMID:18519639)
BHF-UCL PMID:18519639 MGI:3795695 NCBI chrNW_004936503:11,466,955...11,896,887 JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO (MGI:3847057|PMID:19412548) MGI PMID:19412548 MGI:3847057 NCBI chrNW_004936482:7,337,475...7,466,715 JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (MGI:2154839|PMID:11784046), (MGI:60925|PMID:8388780) MGI PMID:8388780 PMID:11784046 MGI:2154839 MGI:60925 NCBI chrNW_004936512:10,502,954...10,524,796 JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within ISO (MGI:3628673|PMID:16624538)
(MGI:1926247|PMID:11060235), (MGI:3628673|PMID:16624538)
MGI PMID:11060235 PMID:16624538 MGI:1926247 MGI:3628673 NCBI chrNW_004936476:25,643,129...25,646,928 JBrowse link
G Scmh1 Scm polycomb group protein homolog 1 acts_upstream_of_or_within ISO (MGI:3703453|PMID:17215307) MGI PMID:17215307 MGI:3703453 NCBI chrNW_004936474:22,648,156...22,784,399 JBrowse link
G Sf3b1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (MGI:3530206|PMID:15741318) MGI PMID:15741318 MGI:3530206 NCBI chrNW_004936506:1,749,591...1,790,860 JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chrNW_004936785:1,276,478...1,320,397 JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chrNW_004936576:604,174...612,440 JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1928592|PMID:11118883)
(MGI:2135419|PMID:11389830)
MGI PMID:11118883 PMID:11389830 MGI:1928592 MGI:2135419 NCBI chrNW_004936527:10,033,095...10,042,713 JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:2667288|PMID:12842913)
(MGI:1201281|PMID:9529255), (MGI:2136068|PMID:11418863)
MGI PMID:9529255 PMID:11418863 PMID:12842913 MGI:1201281 MGI:2136068 MGI:2667288 NCBI chrNW_004936497:14,723,199...14,812,160 JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:3051711|PMID:15215210) MGI PMID:15215210 MGI:3051711 NCBI chrNW_004936497:12,242,869...12,278,012 JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (MGI:5438143|PMID:22987639) MGI PMID:22987639 MGI:5438143 NCBI chrNW_004936579:5,893,064...5,917,021 JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:3039048|PMID:15084464)
(MGI:3614586|PMID:16399080)
MGI PMID:15084464 PMID:16399080 MGI:3039048 MGI:3614586 NCBI chrNW_004936619:3,662,567...3,670,470 JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chrNW_004936489:16,027,359...16,035,041 JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (MGI:3695190|PMID:16845371) MGI PMID:16845371 MGI:3695190 NCBI chrNW_004936524:7,656,523...7,680,043 JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 acts_upstream_of_or_within ISO (MGI:3720547|PMID:17586487) MGI PMID:17586487 MGI:3720547 NCBI chrNW_004936616:3,353,334...3,378,819 JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (MGI:3844764|PMID:19334287) MGI PMID:19334287 MGI:3844764 NCBI chrNW_004936606:3,209,170...3,278,809 JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3835694|PMID:18849982) MGI PMID:18849982 MGI:3835694 NCBI chrNW_004936740:228,377...242,318 JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (MGI:3044441|PMID:15148409) MGI PMID:15148409 MGI:3044441 NCBI chrNW_004936864:150,742...179,205 JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3039991|PMID:15073149), (MGI:4413372|PMID:19795512) MGI PMID:15073149 PMID:19795512 MGI:3039991 MGI:4413372 NCBI chrNW_004936473:6,031,627...6,052,211 JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO (MGI:3628673|PMID:16624538) MGI PMID:16624538 MGI:3628673 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO (MGI:1859075|PMID:10835630) MGI PMID:10835630 MGI:1859075 NCBI chrNW_004936612:389,877...570,595 JBrowse link
G Zic3 Zic family member 3 acts_upstream_of_or_within ISO (MGI:3624254|PMID:16496285) MGI PMID:16496285 MGI:3624254 NCBI chrNW_004936513:9,780,895...9,792,865 JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aurka aurora kinase A acts_upstream_of_or_within ISO (MGI:5449118|PMID:22939930) MGI PMID:22939930 MGI:5449118 NCBI chrNW_004936875:295,238...310,457 JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:1889107|PMID:10964473) MGI PMID:10964473 MGI:1889107 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (MGI:3776330|PMID:18241853)
(MGI:3042338|PMID:15004567)
MGI PMID:15004567 PMID:18241853 MGI:3042338 MGI:3776330 NCBI chrNW_004936539:8,321,432...8,323,909 JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:1353237|PMID:10662781) MGI PMID:10662781 MGI:1353237 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Ddit3 DNA damage inducible transcript 3 involved_in ISO (MGI:4821075|PMID:16434966) BHF-UCL PMID:16434966 MGI:4821075 NCBI chrNW_004936646:1,665,019...1,669,212 JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO (MGI:1889107|PMID:10964473) MGI PMID:10964473 MGI:1889107 NCBI chrNW_004936691:1,060,013...1,459,736 JBrowse link
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (MGI:3530185|PMID:15680351) MGI PMID:15680351 MGI:3530185 NCBI chrNW_004936871:666,961...670,910 JBrowse link
G Hey2 hes related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO (MGI:3530185|PMID:15680351) MGI PMID:15680351 MGI:3530185 NCBI chrNW_004936639:3,705,225...3,714,696 JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO (MGI:2448170|PMID:12490556) MGI PMID:12490556 MGI:2448170 NCBI chrNW_004936600:3,714,630...3,728,813 JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:1346311|PMID:10529425) MGI PMID:10529425 MGI:1346311 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chrNW_004936521:8,171,146...8,178,802 JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO (MGI:1346311|PMID:10529425) MGI PMID:10529425 MGI:1346311 NCBI chrNW_004936506:2,224,598...2,297,022 JBrowse link
G Rnf2 ring finger protein 2 acts_upstream_of_or_within ISO (MGI:2389282|PMID:12183370) MGI PMID:12183370 MGI:2389282 NCBI chrNW_004936481:5,070,578...5,110,087 JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (MGI:3794506|PMID:18321982) UniProt PMID:18321982 MGI:3794506 NCBI chrNW_004936508:7,047,563...7,051,129 JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:2176418|PMID:11731796) MGI PMID:11731796 MGI:2176418 NCBI chrNW_004936737:1,223,653...1,274,664 JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO (MGI:3044041|PMID:15155583) MGI PMID:15155583 MGI:3044041 NCBI chrNW_004936510:6,366,450...6,396,056 JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO (MGI:3776330|PMID:18241853) MGI PMID:18241853 MGI:3776330 NCBI chrNW_004936596:451,483...453,892 JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISO (MGI:4397730|PMID:19841259) UniProt PMID:19841259 MGI:4397730 NCBI chrNW_004936591:3,537,981...3,639,774 JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO (MGI:3580203|PMID:15870281) MGI PMID:15870281 MGI:3580203 NCBI chrNW_004936545:7,286,018...7,407,623 JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chrNW_004936631:3,909,046...3,915,939 JBrowse link
G Tasor transcription activation suppressor involved_in ISO (MGI:6109647|PMID:28839193) UniProt PMID:28839193 MGI:6109647 NCBI chrNW_004936473:7,053,797...7,098,608 JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:9207801) UniProt PMID:9207801 NCBI chrNW_004936558:7,230,361...7,243,651 JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:3043490 NCBI chrNW_004936712:1,848,478...1,962,644 JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO (MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:1303194 NCBI chrNW_004936596:451,483...453,892 JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (MGI:4835157|PMID:9054360) BHF-UCL PMID:9054360 MGI:4835157 NCBI chrNW_004936473:6,031,627...6,052,211 JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839483|PMID:20630950) MGI PMID:20630950 MGI:4839483 NCBI chrNW_004936762:460,342...483,264 JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chrNW_004936864:150,742...179,205 JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chrNW_004937098:212,704...220,589 JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chrNW_004936661:2,322,531...2,330,150 JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chrNW_004936823:283,207...290,970 JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chrNW_004936669:1,292,016...1,334,061 JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chrNW_004936785:1,276,478...1,320,397 JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO (MGI:3611958|PMID:16314491) MGI PMID:16314491 MGI:3611958 NCBI chrNW_004936485:12,428,765...12,439,570 JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO (MGI:3055632|PMID:15363409) MGI PMID:15363409 MGI:3055632 NCBI chrNW_004936470:7,789,486...7,791,067 JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:87488|PMID:9136932) MGI PMID:9136932 MGI:87488 NCBI chrNW_004936675:3,408,549...3,420,828 JBrowse link
epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2677178|PMID:14511481) MGI PMID:14511481 MGI:2677178 NCBI chrNW_004936521:8,171,146...8,178,802 JBrowse link
fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nog noggin involved_in ISO (PMID:8582276) BHF-UCL PMID:8582276 NCBI chrNW_004936490:6,262,651...6,264,069 JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fezf1 FEZ family zinc finger 1 acts_upstream_of_or_within ISO (MGI:3702790|PMID:16971467) MGI PMID:16971467 MGI:3702790 NCBI chrNW_004936605:3,027,138...3,030,442 JBrowse link
G Fezf2 FEZ family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3702790|PMID:16971467) MGI PMID:16971467 MGI:3702790 NCBI chrNW_004936637:4,045,224...4,051,058 JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO (MGI:3772426|PMID:18094027) MGI PMID:18094027 MGI:3772426 NCBI chrNW_004936508:7,103,578...7,106,588 JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO (MGI:3772426|PMID:18094027) MGI PMID:18094027 MGI:3772426 NCBI chrNW_004936512:6,781,001...6,785,358 JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 acts_upstream_of_or_within ISO (MGI:892757|PMID:9169845) MGI PMID:9169845 MGI:892757 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:4361775|PMID:19805295)
(MGI:4360856|PMID:19686689)
MGI PMID:19686689 PMID:19805295 MGI:4360856 MGI:4361775 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Wnt2 Wnt family member 2 acts_upstream_of_or_within ISO (MGI:4360856|PMID:19686689) MGI PMID:19686689 MGI:4360856 NCBI chrNW_004936589:1,825,209...1,866,898 JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within ISO (MGI:4360856|PMID:19686689) MGI PMID:19686689 MGI:4360856 NCBI chrNW_004936690:1,077,538...1,094,005 JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO (MGI:3525936|PMID:15607945) MGI PMID:15607945 MGI:3525936 NCBI chrNW_004936469:51,439,944...51,451,194 JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (MGI:3720541|PMID:17601531) MGI PMID:17601531 MGI:3720541 NCBI chrNW_004936600:4,004,847...4,010,626 JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (MGI:3624192|PMID:16651541) MGI PMID:16651541 MGI:3624192 NCBI chrNW_004936525:1,870,211...1,873,536 JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008), (MGI:4413372|PMID:19795512) MGI PMID:11029008 PMID:19795512 MGI:1891551 MGI:4413372 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO (MGI:59176|PMID:2205396) MGI PMID:2205396 MGI:59176 NCBI chrNW_004936512:6,781,001...6,785,358 JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp3 single stranded DNA binding protein 3 involved_in ISO (MGI:3578570|PMID:15857913) UniProt PMID:15857913 MGI:3578570 NCBI chrNW_004936522:6,802,057...6,957,640 JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO (MGI:76584|PMID:8555108) MGI PMID:8555108 MGI:76584 NCBI chrNW_004936512:6,781,001...6,785,358 JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (MGI:3624192|PMID:16651541) MGI PMID:16651541 MGI:3624192 NCBI chrNW_004936525:1,870,211...1,873,536 JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:2149154|PMID:11500373) MGI PMID:11500373 MGI:2149154 NCBI chrNW_004936711:640,002...642,580 JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (MGI:2149134|PMID:11522634) MGI PMID:11522634 MGI:2149134 NCBI chrNW_004936623:1,096,519...1,098,175 JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chrNW_004936558:2,771,420...2,897,694 JBrowse link
negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx18 T-box transcription factor 18 involved_in ISO (MGI:3722519|PMID:17584735) BHF-UCL PMID:17584735 MGI:3722519 NCBI chrNW_004936510:6,366,450...6,396,056 JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fuz fuzzy planar cell polarity protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chrNW_004936664:3,596,764...3,601,676 JBrowse link
G Ofd1 OFD1 centriole and centriolar satellite protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chrNW_004936470:3,292,961...3,331,915 JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISO (MGI:5545944|PMID:23072809) UniProt PMID:23072809 MGI:5545944 NCBI chrNW_004936823:283,207...290,970 JBrowse link
G LOC101972418 NOTCH regulated ankyrin repeat protein acts_upstream_of_or_within ISO (MGI:5317364|PMID:21795391) MGI PMID:21795391 MGI:5317364 NCBI chrNW_004936669:702,825...705,009 JBrowse link
neural plate anterior/posterior regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr2 cadherin EGF LAG seven-pass G-type receptor 2 involved_in ISO (MGI:3765258|PMID:12755329) BHF-UCL PMID:12755329 MGI:3765258 NCBI chrNW_004936704:779,528...803,860 JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family member 6 involved_in ISO (MGI:4943609|PMID:21397848) UniProt PMID:21397848 MGI:4943609 NCBI chrNW_004936741:867,501...872,899 JBrowse link
G Tdrd5 tudor domain containing 5 involved_in ISO (MGI:4946318|PMID:21383078) UniProt PMID:21383078 MGI:4946318 NCBI chrNW_004936481:9,418,512...9,485,388 JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule involved_in ISO (MGI:5559673|PMID:11044396) Roslin_Institute PMID:11044396 MGI:5559673 NCBI chrNW_004936527:10,033,095...10,042,713 JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO (MGI:3609071|PMID:16256739) MGI PMID:16256739 MGI:3609071 NCBI chrNW_004936531:7,273,681...7,279,394 JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO (MGI:5546318|PMID:23552073) MGI PMID:23552073 MGI:5546318 NCBI chrNW_004936500:4,244,706...4,257,223 JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chrNW_004936620:2,966,341...2,969,349 JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:3611720 NCBI chrNW_004937847:8,179...16,783 JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:4950786|PMID:21445260) MGI PMID:21445260 MGI:4950786 NCBI chrNW_004936601:2,137,490...2,143,797 JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:4950786|PMID:21445260) MGI PMID:21445260 MGI:4950786 NCBI chrNW_004936521:8,171,146...8,178,802 JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chrNW_004936495:1,433,124...1,449,409 JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (MGI:1312998|PMID:9799237) MGI PMID:9799237 MGI:1312998 NCBI chrNW_004936476:16,779,941...16,789,499 JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chrNW_004936473:6,031,627...6,052,211 JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004936529:8,885,803...9,034,217 JBrowse link
regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nog noggin involved_in ISO (PMID:8582276) BHF-UCL PMID:8582276 NCBI chrNW_004936490:6,262,651...6,264,069 JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 involved_in ISO (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chrNW_004936504:4,736,621...4,752,354 JBrowse link
G Cdx2 caudal type homeobox 2 involved_in ISO (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chrNW_004936472:23,137,936...23,141,205 JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5689216|PMID:26114479) UniProt PMID:26114479 MGI:5689216 NCBI chrNW_004937098:212,704...220,589 JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO (MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chrNW_004936503:3,857,165...3,864,130 JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
ISO (PMID:19061953)
(MGI:4367298|PMID:19779553)
UniProt
MGI
PMID:19061953 PMID:19779553 MGI:4367298 NCBI chrNW_004936823:283,207...290,970 JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:72973|PMID:7789282) MGI PMID:7789282 MGI:72973 NCBI chrNW_004936669:1,292,016...1,334,061 JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO (MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chrNW_004936569:4,215,513...4,307,815 JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (MGI:3578715|PMID:15889094) MGI PMID:15889094 MGI:3578715 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:20093472) UniProt PMID:20093472 NCBI chrNW_004936502:7,206,226...7,232,798 JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO (MGI:82985|PMID:8887324) MGI PMID:8887324 MGI:82985 NCBI chrNW_004936520:5,707,542...5,716,966 JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (MGI:4421275|PMID:19913509) MGI PMID:19913509 MGI:4421275 NCBI chrNW_004936496:1,248,582...1,251,406 JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chrNW_004936469:50,329,564...50,443,532 JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chrNW_004936620:2,966,341...2,969,349 JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:3611720 NCBI chrNW_004937847:8,179...16,783 JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (MGI:5448135|PMID:22949634) MGI PMID:22949634 MGI:5448135 NCBI chrNW_004936502:10,980,303...11,196,711 JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G LOC101972418 NOTCH regulated ankyrin repeat protein acts_upstream_of_or_within ISO (MGI:5438472|PMID:21998026) MGI PMID:21998026 MGI:5438472 NCBI chrNW_004936669:702,825...705,009 JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chrNW_004936483:15,555,084...15,557,060 JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chrNW_004936495:1,433,124...1,449,409 JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chrNW_004936499:7,845,180...7,848,954 JBrowse link
G Ripply2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within
ISO (MGI:3613215|PMID:16326386)
(MGI:4459001|PMID:20346937)
UniProt
MGI
PMID:16326386 PMID:20346937 MGI:3613215 MGI:4459001 NCBI chrNW_004936510:7,101,148...7,106,184 JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:1195384|PMID:9420335) MGI PMID:9420335 MGI:1195384 NCBI chrNW_004936497:12,242,869...12,278,012 JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chrNW_004936501:12,402,709...12,407,571 JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chrNW_004936558:1,223,114...1,258,699 JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chrNW_004936686:621,502...872,824 JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (MGI:3034157|PMID:14960495) MGI PMID:14960495 MGI:3034157 NCBI chrNW_004937098:212,704...220,589 JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO (MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:2669571 NCBI chrNW_004936541:216,390...238,153 JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within ISO (MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:2669571 NCBI chrNW_004936546:2,239,442...2,304,099 JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl interactor 1 acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chrNW_004936484:2,090,605...2,194,109 JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:3624894 NCBI chrNW_004936551:359,134...534,672 JBrowse link
G Axin2 axin 2 acts_upstream_of_or_within ISO (MGI:3037351|PMID:12636920) MGI PMID:12636920 MGI:3037351 NCBI chrNW_004936541:7,155,963...7,242,466 JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:3702797 NCBI chrNW_004936804:52,435...115,289 JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5296388|PMID:22072575) UniProt PMID:22072575 MGI:5296388 NCBI chrNW_004936487:11,793,078...11,813,803 JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
ISO (MGI:5545944|PMID:23072809)
(MGI:3578712|PMID:15902259)
UniProt
MGI
PMID:15902259 PMID:23072809 MGI:3578712 MGI:5545944 NCBI chrNW_004937098:212,704...220,589 JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO (MGI:1095777|PMID:9272948)
(MGI:3620337|PMID:15170697)
MGI PMID:9272948 PMID:15170697 MGI:1095777 MGI:3620337 NCBI chrNW_004936661:2,322,531...2,330,150 JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within ISO (MGI:3583034|PMID:15937931) MGI PMID:15937931 MGI:3583034 NCBI chrNW_004936492:696,982...778,132 JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chrNW_004936469:50,329,564...50,443,532 JBrowse link
G Foxb1 forkhead box B1 involved_in ISO (MGI:3771770|PMID:18064677) UniProt PMID:18064677 MGI:3771770 NCBI chrNW_004936471:20,934,524...20,935,584 JBrowse link
G Foxc2 forkhead box C2 involved_in ISO (MGI:2150572|PMID:11562355) UniProt PMID:11562355 MGI:2150572 NCBI chrNW_004936641:2,236,224...2,238,501 JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:1928688|PMID:11124112) MGI PMID:11124112 MGI:1928688 NCBI chrNW_004943883:4...1,756 JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO (MGI:3046002|PMID:15170214)
(MGI:2152470|PMID:11641270), (MGI:4367298|PMID:19779553)
MGI PMID:11641270 PMID:15170214 PMID:19779553 MGI:2152470 MGI:3046002 MGI:4367298 NCBI chrNW_004936595:1,352,621...1,355,177 JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO (MGI:3583034|PMID:15937931)
(MGI:3709911|PMID:17325035)
MGI PMID:15937931 PMID:17325035 MGI:3583034 MGI:3709911 NCBI chrNW_004936490:16,952,698...16,960,424 JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (MGI:3510574|PMID:15545629)
(MGI:1334099|PMID:10090727)
MGI PMID:10090727 PMID:15545629 MGI:1334099 MGI:3510574 NCBI chrNW_004936818:453,635...569,194 JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
ISO (MGI:5545944|PMID:23072809)
(MGI:3774705|PMID:18234727)
UniProt
MGI
PMID:18234727 PMID:23072809 MGI:3774705 MGI:5545944 NCBI chrNW_004936823:283,207...290,970 JBrowse link
G LOC101966001 titin-cap acts_upstream_of_or_within ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chrNW_004936490:14,856,433...14,857,692 JBrowse link
G LOC101972150 protocadherin-8 acts_upstream_of_or_within ISO (MGI:2451199|PMID:12591245) MGI PMID:12591245 MGI:2451199 NCBI chrNW_004936667:716,802...721,441 JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:4839544 NCBI chrNW_004936762:460,342...483,264 JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:3578712 NCBI chrNW_004936483:15,555,084...15,557,060 JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (MGI:3603078|PMID:16000382) MGI PMID:16000382 MGI:3603078 NCBI chrNW_004936550:1,439,652...1,577,804 JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within ISO (MGI:1928575|PMID:11124811), (MGI:5545970|PMID:21750544) MGI PMID:11124811 PMID:21750544 MGI:1928575 MGI:5545970 NCBI chrNW_004936493:13,129,883...13,130,464 JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO (MGI:1861090|PMID:10929709)
(MGI:78390|PMID:8565825)
(MGI:3849775|PMID:19531352)
MGI PMID:8565825 PMID:10929709 PMID:19531352 MGI:1861090 MGI:3849775 MGI:78390 NCBI chrNW_004936698:1,609,227...1,611,283 JBrowse link
G Myf6 myogenic factor 6 acts_upstream_of_or_within ISO (MGI:76810|PMID:7588068) MGI PMID:7588068 MGI:76810 NCBI chrNW_004936698:1,599,149...1,600,989 JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chrNW_004936509:11,525,764...11,624,833 JBrowse link
G Nkx3-1 NK3 homeobox 1 acts_upstream_of_or_within ISO (PMID:9621431) BHF-UCL PMID:9621431 NCBI chrNW_004936555:7,087,677...7,091,334 JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO (MGI:5608942|PMID:24875805) MGI PMID:24875805 MGI:5608942 NCBI chrNW_004936538:101,245...109,796 JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO (MGI:4459579|PMID:20484223) MGI PMID:20484223 MGI:4459579 NCBI chrNW_004936501:8,246,927...8,273,258 JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO (MGI:3590033|PMID:16093716) MGI PMID:16093716 MGI:3590033 NCBI chrNW_004936620:3,765,481...3,773,779 JBrowse link
G Plxna2 plexin A2 acts_upstream_of_or_within ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004936557:4,808,371...4,920,453 JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within ISO (MGI:2660984|PMID:12697902) MGI PMID:12697902 MGI:2660984 NCBI chrNW_004936485:19,111,704...19,137,689 JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within ISO (MGI:1267118|PMID:9636176) MGI PMID:9636176 MGI:1267118 NCBI chrNW_004936536:6,408,066...6,427,864 JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO (MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:3624894 NCBI chrNW_004936590:4,722,914...4,887,615 JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553)
(MGI:87649|PMID:9153393)
MGI PMID:9153393 PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 MGI:87649 NCBI chrNW_004936488:2,464,623...2,528,807 JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553) MGI PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 NCBI chrNW_004936526:3,584,194...3,611,719 JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO (MGI:4367298|PMID:19779553) MGI PMID:19779553 MGI:4367298 NCBI chrNW_004936477:3,354,336...3,445,248 JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in
ISO (MGI:3715395|PMID:17531978)
(MGI:3613215|PMID:16326386)
MGI
UniProt
PMID:16326386 PMID:17531978 MGI:3613215 MGI:3715395 NCBI chrNW_004936510:7,101,148...7,106,184 JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (MGI:3037488|PMID:14745966) MGI PMID:14745966 MGI:3037488 NCBI chrNW_004936796:630,307...675,157 JBrowse link
G Sema3c semaphorin 3C acts_upstream_of_or_within ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004936810:903,306...1,063,024 JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:10654605)
(MGI:3618960|PMID:16467359)
BHF-UCL
MGI
PMID:10654605 PMID:16467359 MGI:3618960 NCBI chrNW_004936785:1,276,478...1,320,397 JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chrNW_004936576:604,174...612,440 JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chrNW_004936471:27,080,662...27,185,861 JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO (MGI:3044041|PMID:15155583) MGI PMID:15155583 MGI:3044041 NCBI chrNW_004936510:6,366,450...6,396,056 JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171)
(MGI:3701028|PMID:16835439)
(MGI:64493|PMID:8293872)
MGI PMID:8293872 PMID:15384171 PMID:16835439 MGI:3056222 MGI:3701028 MGI:64493 NCBI chrNW_004936489:16,027,359...16,035,041 JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chrNW_004936558:1,223,114...1,258,699 JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (MGI:3709913|PMID:17320900) MGI PMID:17320900 MGI:3709913 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Ttn titin acts_upstream_of_or_within ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chrNW_004936509:7,733,426...7,999,503 JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (MGI:3611726|PMID:16291790), (MGI:64780|PMID:8299937)
(MGI:3037351|PMID:12636920)
MGI PMID:8299937 PMID:12636920 PMID:16291790 MGI:3037351 MGI:3611726 MGI:64780 NCBI chrNW_004936864:150,742...179,205 JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chrNW_004936473:6,031,627...6,052,211 JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within ISO (MGI:3708426|PMID:17116431) MGI PMID:17116431 MGI:3708426 NCBI chrNW_004936527:7,760,609...7,785,360 JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (MGI:3590396|PMID:16157277), (MGI:3624924|PMID:16598713) MGI PMID:16157277 PMID:16598713 MGI:3590396 MGI:3624924 NCBI chrNW_004936469:32,240,730...32,372,413 JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004936493:11,888,024...11,895,058 JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004936493:11,888,024...11,895,058 JBrowse link
specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO (PMID:10706139), (PMID:17118062) UniProt PMID:10706139 PMID:17118062 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO (MGI:3701017|PMID:16790475) MGI PMID:16790475 MGI:3701017 NCBI chrNW_004936646:215,101...227,296 JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004936597:2,708,001...2,709,702 JBrowse link
G Tifab TIFA inhibitor involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004936597:2,620,661...2,621,302 JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (MGI:62488|PMID:8395349) UniProt PMID:8395349 MGI:62488 NCBI chrNW_004936533:5,411,949...5,459,693 JBrowse link
transforming growth factor beta receptor signaling pathway involved in primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2677178|PMID:14511481) MGI PMID:14511481 MGI:2677178 NCBI chrNW_004936521:8,171,146...8,178,802 JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chrNW_004936787:307,290...309,963 JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3055483|PMID:15469977) MGI PMID:15469977 MGI:3055483 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chrNW_004936785:1,276,478...1,320,397 JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chrNW_004936576:604,174...612,440 JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule ISO RGD PMID:25281935 RGD:12832757 NCBI chrNW_004936527:10,033,095...10,042,713 JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chrNW_004936509:11,525,764...11,624,833 JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO (MGI:1858546|PMID:10809672) MGI PMID:10809672 MGI:1858546 NCBI chrNW_004936483:2,374,357...2,561,322 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12142
    multicellular organismal process 6297
      pattern specification process 443
        regionalization 355
          anterior/posterior pattern specification 215
            anterior region determination 0
            anterior/posterior axis specification + 49
            anterior/posterior pattern specification involved in kidney development + 2
            anterior/posterior pattern specification, imaginal disc + 0
            compartment pattern specification + 4
            embryonic heart tube anterior/posterior pattern specification + 3
            forebrain anterior/posterior pattern specification 4
            foregut regionalization + 3
            neural plate anterior/posterior regionalization + 6
            periodic partitioning by pair rule gene 0
            posterior abdomen determination + 0
            rostrocaudal neural tube patterning + 14
            somitogenesis + 72
            spinal cord anterior/posterior patterning + 1
            thorax and anterior abdomen determination + 3
Path 2
Term Annotations click to browse term
  biological_process 12142
    developmental process 5709
      anatomical structure development 5339
        multicellular organism development 4889
          pattern specification process 443
            regionalization 355
              anterior/posterior pattern specification 215
                anterior region determination 0
                anterior/posterior axis specification + 49
                anterior/posterior pattern specification involved in kidney development + 2
                anterior/posterior pattern specification, imaginal disc + 0
                compartment pattern specification + 4
                embryonic heart tube anterior/posterior pattern specification + 3
                forebrain anterior/posterior pattern specification 4
                foregut regionalization + 3
                neural plate anterior/posterior regionalization + 6
                periodic partitioning by pair rule gene 0
                posterior abdomen determination + 0
                rostrocaudal neural tube patterning + 14
                somitogenesis + 72
                spinal cord anterior/posterior patterning + 1
                thorax and anterior abdomen determination + 3
paths to the root