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ONTOLOGY REPORT - ANNOTATIONS


Term:anterior/posterior pattern specification
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Accession:GO:0009952 term browser browse the term
Definition:The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
Synonyms:related_synonym: anterior/posterior pattern formation


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anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2A activin A receptor type 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118) Ensembl
MGI
PMID:10452853 PMID:16991118 GO_REF:0000107 MGI:1344152 MGI:3689276 NCBI chr15:4,177,333...4,259,056
Ensembl chr15:4,173,805...4,259,706
JBrowse link
G ACVR2B activin A receptor type 2B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118)
(MGI:3689276|PMID:16991118), (MGI:3695190|PMID:16845371), (MGI:894948|PMID:9242489)
(MGI:3525050|PMID:15542835)
(MGI:3695190|PMID:16845371)
Ensembl
MGI
PMID:9242489 PMID:10452853 PMID:15542835 PMID:16845371 PMID:16991118 GO_REF:0000107 MGI:1344152 MGI:3525050 MGI:3689276 MGI:3695190 MGI:894948 NCBI chr13:23,237,699...23,276,086
Ensembl chr13:23,237,699...23,267,382
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (MGI:3612223|PMID:16368932)
(MGI:3703483|PMID:17067568)
(MGI:3530707|PMID:15652703), (MGI:3578600|PMID:15872003)
MGI PMID:15652703 PMID:15872003 PMID:16368932 PMID:17067568 MGI:3530707 MGI:3578600 MGI:3612223 MGI:3703483 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,715,620...114,037,249
JBrowse link
G ALX1 ALX homeobox 1 acts_upstream_of_or_within ISO (MGI:1314705|PMID:9847249) MGI PMID:9847249 MGI:1314705 NCBI chr 5:96,761,683...96,785,125
Ensembl chr 5:96,762,592...96,784,972
JBrowse link
G ALX4 ALX homeobox 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1314705|PMID:9847249)
(MGI:1098911|PMID:9374397), (MGI:1314705|PMID:9847249)
Ensembl
MGI
PMID:9374397 PMID:9847249 GO_REF:0000107 MGI:1098911 MGI:1314705 NCBI chr 2:18,070,726...18,085,685
Ensembl chr 2:18,037,578...18,085,868
JBrowse link
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (MGI:2449253|PMID:12645927) MGI PMID:12645927 MGI:2449253 NCBI chr 2:116,913,354...116,985,303
Ensembl chr 2:116,812,582...117,034,912
JBrowse link
G ARC activity regulated cytoskeleton associated protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1355000|PMID:10727859) Ensembl
MGI
PMID:10727859 GO_REF:0000107 MGI:1355000 NCBI chr 4:1,517,986...1,521,403
Ensembl chr 4:1,517,980...1,521,403
JBrowse link
G BARX1 BARX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3766872|PMID:17855428) Ensembl
MGI
PMID:17855428 GO_REF:0000107 MGI:3766872 NCBI chr 3:43,284,609...43,288,269
Ensembl chr 3:43,284,611...43,288,103
JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:61,526,121...61,533,686
Ensembl chr13:61,526,197...61,533,686
JBrowse link
G BHLHE41 basic helix-loop-helix family member e41 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:47,687,662...47,692,761
Ensembl chr 5:47,686,404...47,692,762
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,793
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3525050|PMID:15542835)
(MGI:1855789|PMID:10772805)
Ensembl
MGI
PMID:10772805 PMID:15542835 GO_REF:0000107 MGI:1855789 MGI:3525050 NCBI chr15:105,971,577...106,132,496
Ensembl chr15:105,970,427...106,135,730
JBrowse link
G BPTF bromodomain PHD finger transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3821803|PMID:18794365)
(MGI:3840601|PMID:18974875)
Ensembl
MGI
PMID:18794365 PMID:18974875 GO_REF:0000107 MGI:3821803 MGI:3840601 NCBI chr12:14,112,943...14,254,810
Ensembl chr12:14,112,643...14,255,408
JBrowse link
G BTG2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (MGI:3525050|PMID:15542835) MGI PMID:15542835 MGI:3525050 NCBI chr 9:64,033,853...64,037,795 JBrowse link
G CDON cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4422144|PMID:19754878) Ensembl
MGI
PMID:19754878 GO_REF:0000107 MGI:4422144 NCBI chr 9:53,079,543...53,178,881
Ensembl chr 9:53,079,550...53,178,881
JBrowse link
G CDX1 caudal type homeobox 1 acts_upstream_of_or_within ISO (MGI:2154839|PMID:11784046)
(MGI:2154839|PMID:11784046), (MGI:77274|PMID:7585967)
MGI PMID:7585967 PMID:11784046 MGI:2154839 MGI:77274 NCBI chr 2:151,202,842...151,217,132
Ensembl chr 2:151,202,807...151,222,047
JBrowse link
G CDX2 caudal type homeobox 2 acts_upstream_of_or_within ISO (MGI:4398801|PMID:19853565) MGI PMID:19853565 MGI:4398801 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057
JBrowse link
G CDX4 caudal type homeobox 4 acts_upstream_of_or_within ISO (MGI:4398801|PMID:19853565) MGI PMID:19853565 MGI:4398801 NCBI chr  X:59,089,131...59,100,958
Ensembl chr  X:59,091,716...59,102,542
JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (MGI:1197794|PMID:9501024) MGI PMID:9501024 MGI:1197794 NCBI chr 1:207,817,095...207,821,800
Ensembl chr 1:207,818,042...207,821,996
JBrowse link
G CFC1B cripto, FRL-1, cryptic family 1B involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:2136711|PMID:11412024)
GO_Central
MGI
PMID:11412024 PMID:21873635 MGI:2136711 NCBI chr15:56,943,183...56,951,929 JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3614586|PMID:16399080) Ensembl
MGI
PMID:16399080 GO_REF:0000107 MGI:3614586 NCBI chr14:50,528,950...50,558,664
Ensembl chr14:50,528,954...50,558,663
JBrowse link
G CTNNBIP1 catenin beta interacting protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3044441|PMID:15148409) Ensembl
MGI
PMID:15148409 GO_REF:0000107 MGI:3044441 NCBI chr 6:70,184,935...70,241,560
Ensembl chr 6:70,184,933...70,241,429
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 acts_upstream_of_or_within ISO (MGI:3703483|PMID:17067568) MGI PMID:17067568 MGI:3703483 NCBI chr14:104,561,394...104,567,099
Ensembl chr14:104,563,195...104,567,097
JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3703483|PMID:17067568) Ensembl
MGI
PMID:17067568 GO_REF:0000107 MGI:3703483 NCBI chr14:104,550,901...104,558,977
Ensembl chr14:104,551,333...104,558,977
JBrowse link
G EMX2 empty spiracles homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2386059|PMID:12196586)
(MGI:3578670|PMID:15917450)
Ensembl
MGI
PMID:12196586 PMID:15917450 GO_REF:0000107 MGI:2386059 MGI:3578670 NCBI chr14:127,649,675...127,656,972
Ensembl chr14:127,650,688...127,655,706
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr17:29,997,397...30,001,704
Ensembl chr17:29,997,400...30,001,707
JBrowse link
G FOXH1 forkhead box H1 acts_upstream_of_or_within ISO (MGI:1934969|PMID:11358868) MGI PMID:11358868 MGI:1934969 NCBI chr 4:320,610...324,570
Ensembl chr 4:320,537...324,481
JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4367921|PMID:19877275) MGI PMID:19877275 MGI:4367921 NCBI chr 6:54,823,680...54,830,425
Ensembl chr 6:54,823,666...54,829,508
JBrowse link
G GDF11 growth differentiation factor 11 acts_upstream_of_or_within ISO (MGI:1339513|PMID:10391213)
(MGI:5509072|PMID:23918385)
MGI PMID:10391213 PMID:23918385 MGI:1339513 MGI:5509072 NCBI chr 5:21,191,322...21,199,024
Ensembl chr 5:21,191,142...21,201,818
JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5439039|PMID:22841643) Ensembl
MGI
PMID:22841643 GO_REF:0000107 MGI:5439039 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5439039|PMID:22841643)
(MGI:3053244|PMID:15315762)
InterPro
MGI
Ensembl
PMID:15315762 PMID:22841643 GO_REF:0000002 GO_REF:0000107 MGI:3053244 MGI:5439039 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,071...52,697,903
JBrowse link
G GRSF1 G-rich RNA sequence binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578569|PMID:15857914) Ensembl
MGI
PMID:15857914 GO_REF:0000107 MGI:3578569 NCBI chr 8:67,586,935...67,607,422
Ensembl chr 8:67,586,730...67,608,259
JBrowse link
G HELT helt bHLH transcription factor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:46,087,988...46,089,986
Ensembl chr15:46,087,988...46,090,661
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:131,135,970...131,137,865
Ensembl chr13:131,135,724...131,138,236
JBrowse link
G HES2 hes family bHLH transcription factor 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:67,276,774...67,279,617
Ensembl chr 6:67,276,777...67,279,604
JBrowse link
G HES3 hes family bHLH transcription factor 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:67,134,259...67,138,639
Ensembl chr 6:67,131,570...67,135,292
JBrowse link
G HES4 hes family bHLH transcription factor 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:63,351,593...63,356,690
Ensembl chr 6:63,351,602...63,356,466
JBrowse link
G HES5 hes family bHLH transcription factor 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:64,409,110...64,410,541
Ensembl chr 6:64,409,115...64,411,006
JBrowse link
G HES6 hes family bHLH transcription factor 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:137,785,808...137,787,689
Ensembl chr15:137,785,808...137,787,694
JBrowse link
G HES7 hes family bHLH transcription factor 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:53,334,350...53,339,336
Ensembl chr12:53,334,901...53,337,376
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:56,859,640...56,863,807
Ensembl chr 4:56,859,663...56,863,789
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:37,219,887...37,231,321
Ensembl chr 1:37,219,883...37,231,385
JBrowse link
G HHEX hematopoietically expressed homeobox involved_in ISO (MGI:3777521|PMID:16936074) UniProt PMID:16936074 MGI:3777521 NCBI chr14:104,194,424...104,199,684
Ensembl chr14:104,194,343...104,200,221
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3619785|PMID:16537918) Ensembl
MGI
PMID:16537918 GO_REF:0000107 MGI:3619785 NCBI chr 4:106,570,950...106,627,114
Ensembl chr 4:106,572,724...106,627,152
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3619785|PMID:16537918) Ensembl
MGI
PMID:16537918 GO_REF:0000107 MGI:3619785 NCBI chr18:9,940,535...10,141,815
Ensembl chr18:9,747,737...10,135,083
JBrowse link
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578600|PMID:15872003) Ensembl
MGI
PMID:15872003 GO_REF:0000107 MGI:3578600 NCBI chr12:39,143,119...39,201,631
Ensembl chr12:39,143,121...39,313,511
JBrowse link
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (MGI:3055618|PMID:15367676)
(MGI:1346308|PMID:10529420)
MGI PMID:10529420 PMID:15367676 MGI:1346308 MGI:3055618 NCBI chr18:45,477,561...45,480,306
Ensembl chr18:45,477,548...45,480,413
JBrowse link
G HOXA10 homeobox A10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2667742|PMID:12869760) Ensembl
MGI
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr18:45,393,525...45,403,259
Ensembl chr18:45,393,712...45,403,257
JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2667742|PMID:12869760) Ensembl
MGI
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,574...45,392,573
JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1098901|PMID:9367425) Ensembl
MGI
PMID:9367425 GO_REF:0000107 MGI:1098901 NCBI chr18:45,470,079...45,473,345
Ensembl chr18:45,470,419...45,473,347
JBrowse link
G HOXA3 homeobox A3 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:67616|PMID:7913519)
(MGI:1195045|PMID:9441667)
GO_Central
MGI
PMID:7913519 PMID:9441667 PMID:21873635 MGI:1195045 MGI:67616 NCBI chr18:45,421,542...45,467,803
Ensembl chr18:45,454,213...45,466,543
JBrowse link
G HOXA4 homeobox A4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:67413|PMID:7918106)
(MGI:74948|PMID:7628700)
GO_Central
MGI
PMID:7628700 PMID:7918106 PMID:21873635 MGI:67413 MGI:74948 NCBI chr18:45,443,268...45,445,662 JBrowse link
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1203259|PMID:9603431), (MGI:63693|PMID:7901120)
(MGI:3720535|PMID:17626057)
(MGI:3723390|PMID:17417799)
Ensembl
MGI
PMID:7901120 PMID:9603431 PMID:17417799 PMID:17626057 GO_REF:0000107 MGI:1203259 MGI:3720535 MGI:3723390 MGI:63693 NCBI chr18:45,429,691...45,432,723
Ensembl chr18:45,421,663...45,432,885
JBrowse link
G HOXA6 homeobox A6 acts_upstream_of_or_within ISO (MGI:3720535|PMID:17626057)
(MGI:67413|PMID:7918106)
MGI PMID:7918106 PMID:17626057 MGI:3720535 MGI:67413 NCBI chr18:45,423,530...45,429,947 JBrowse link
G HOXA7 homeobox A7 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1313067|PMID:9784603)
GO_Central
MGI
PMID:9784603 PMID:21873635 MGI:1313067 NCBI chr18:45,417,137...45,419,113
Ensembl chr18:45,417,203...45,419,136
JBrowse link
G HOXA9 homeobox A9 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3720535|PMID:17626057)
(MGI:78984|PMID:8625797)
(MGI:85243|PMID:9013929)
GO_Central
MGI
PMID:8625797 PMID:9013929 PMID:17626057 PMID:21873635 MGI:3720535 MGI:78984 MGI:85243 NCBI chr18:45,404,594...45,411,512 JBrowse link
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1346308|PMID:10529420)
(MGI:1859107|PMID:10885747)
Ensembl
MGI
PMID:10529420 PMID:10885747 GO_REF:0000107 MGI:1346308 MGI:1859107 NCBI chr12:24,784,953...24,786,377
Ensembl chr12:24,784,953...24,786,377
JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1859107|PMID:10885747)
(MGI:85074|PMID:9012503)
Ensembl
MGI
PMID:9012503 PMID:10885747 GO_REF:0000107 MGI:1859107 MGI:85074 NCBI chr12:24,796,786...24,800,499
Ensembl chr12:24,796,533...24,799,536
JBrowse link
G HOXB3 homeobox B3 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1195045|PMID:9441667)
(MGI:1859107|PMID:10885747)
GO_Central
MGI
PMID:9441667 PMID:10885747 PMID:21873635 MGI:1195045 MGI:1859107 NCBI chr12:24,803,119...24,827,557
Ensembl chr12:24,804,647...24,806,783
JBrowse link
G HOXB4 homeobox B4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr12:24,830,453...24,832,534 JBrowse link
G HOXB5 homeobox B5 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3720535|PMID:17626057)
(MGI:1859107|PMID:10885747)
(MGI:70296|PMID:7828847)
GO_Central
MGI
PMID:7828847 PMID:10885747 PMID:17626057 PMID:21873635 MGI:1859107 MGI:3720535 MGI:70296 NCBI chr12:24,845,224...24,849,639
Ensembl chr12:24,845,225...24,847,845
JBrowse link
G HOXB6 homeobox B6 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:70296|PMID:7828847)
(MGI:1859107|PMID:10885747)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:7828847 PMID:10885747 PMID:17626057 PMID:21873635 MGI:1859107 MGI:3720535 MGI:70296 NCBI chr12:24,849,741...24,853,494
Ensembl chr12:24,849,741...24,852,488
JBrowse link
G HOXB7 homeobox B7 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1859107|PMID:10885747)
(MGI:1313067|PMID:9784603)
GO_Central
MGI
PMID:9784603 PMID:10885747 PMID:21873635 MGI:1313067 MGI:1859107 NCBI chr12:24,861,165...24,864,675
Ensembl chr12:24,861,174...24,864,620
JBrowse link
G HOXB8 homeobox B8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1933164|PMID:11311170)
(MGI:1349283|PMID:10559485), (MGI:1933164|PMID:11311170)
(MGI:1859107|PMID:10885747)
(MGI:2681074|PMID:14623233)
Ensembl
MGI
PMID:10559485 PMID:10885747 PMID:11311170 PMID:14623233 GO_REF:0000107 MGI:1349283 MGI:1859107 MGI:1933164 MGI:2681074 NCBI chr12:24,865,985...24,879,706
Ensembl chr12:24,865,839...24,868,619
JBrowse link
G HOXB9 homeobox B9 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr12:24,872,662...24,880,134 JBrowse link
G HOXC10 homeobox C10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2667742|PMID:12869760) Ensembl
MGI
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr 5:19,197,810...19,202,975
Ensembl chr 5:19,197,807...19,202,970
JBrowse link
G HOXC11 homeobox C11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2667742|PMID:12869760) Ensembl
MGI
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr 5:19,181,580...19,189,031
Ensembl chr 5:19,185,746...19,189,023
JBrowse link
G HOXC13 homeobox C13 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1195385|PMID:9420327) Ensembl
MGI
PMID:9420327 GO_REF:0000107 MGI:1195385 NCBI chr 5:19,151,096...19,159,008
Ensembl chr 5:19,151,169...19,157,657
JBrowse link
G HOXC4 homeobox C4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:81673|PMID:8660891)
(MGI:79121|PMID:8626021)
GO_Central
MGI
PMID:8626021 PMID:8660891 PMID:21873635 MGI:79121 MGI:81673 NCBI chr 5:19,250,411...19,268,267
Ensembl chr 5:19,265,081...19,268,257
JBrowse link
G HOXC5 homeobox C5 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:17626057 PMID:21873635 MGI:3720535 NCBI chr 5:19,245,857...19,248,183
Ensembl chr 5:19,245,851...19,248,172
JBrowse link
G HOXC6 homeobox C6 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
Ensembl
PMID:17626057 PMID:21873635 GO_REF:0000107 MGI:3720535 NCBI chr 5:19,230,227...19,243,522
Ensembl chr 5:19,229,871...19,243,512
JBrowse link
G HOXC8 homeobox C8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1933164|PMID:11311170) Ensembl
MGI
PMID:11311170 GO_REF:0000107 MGI:1933164 NCBI chr 5:19,222,124...19,225,734
Ensembl chr 5:19,221,760...19,225,846
JBrowse link
G HOXC9 homeobox C9 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:73980|PMID:7547473)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:7547473 PMID:17626057 PMID:21873635 MGI:3720535 MGI:73980 NCBI chr 5:19,212,490...19,215,859
Ensembl chr 5:19,212,905...19,215,984
JBrowse link
G HOXD10 homeobox D10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1350864|PMID:10642795)
(MGI:2667742|PMID:12869760)
Ensembl
MGI
PMID:10642795 PMID:12869760 GO_REF:0000107 MGI:1350864 MGI:2667742 NCBI chr15:81,911,372...81,921,164
Ensembl chr15:81,917,613...81,920,884
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,910,281
JBrowse link
G HOXD13 homeobox D13 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:63627|PMID:8106170) Ensembl
MGI
PMID:8106170 GO_REF:0000107 MGI:63627 NCBI chr15:81,893,997...81,897,965
Ensembl chr15:81,894,121...81,898,944
JBrowse link
G HOXD3 homeobox D3 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:67616|PMID:7913519)
(MGI:63793|PMID:7910549), (MGI:67616|PMID:7913519)
(MGI:1195045|PMID:9441667)
GO_Central
MGI
PMID:7910549 PMID:7913519 PMID:9441667 PMID:21873635 MGI:1195045 MGI:63793 MGI:67616 NCBI chr15:81,969,482...81,974,893
Ensembl chr15:81,953,834...81,973,816
JBrowse link
G HOXD4 homeobox D4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr15:81,952,859...81,954,459 JBrowse link
G HOXD8 homeobox D8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1933164|PMID:11311170) Ensembl
MGI
PMID:11311170 GO_REF:0000107 MGI:1933164 NCBI chr15:81,930,923...81,935,528
Ensembl chr15:81,931,383...81,935,529
JBrowse link
G HOXD9 homeobox D9 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:78984|PMID:8625797)
(MGI:1350864|PMID:10642795)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:8625797 PMID:10642795 PMID:17626057 PMID:21873635 MGI:1350864 MGI:3720535 MGI:78984 NCBI chr15:81,910,415...81,926,276
Ensembl chr15:81,924,142...81,926,274
JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (MGI:3609520|PMID:16109169) MGI PMID:16109169 MGI:3609520 NCBI chr 8:1,809,768...1,934,002
Ensembl chr 8:1,809,785...1,934,024
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:2660994|PMID:12701101)
(MGI:3579954|PMID:15930098)
MGI PMID:12701101 PMID:15930098 MGI:2660994 MGI:3579954 NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,022,953
JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (MGI:1336552|PMID:10220415) MGI PMID:10220415 MGI:1336552 NCBI chr 2:134,932,339...135,069,408
Ensembl chr 2:134,932,615...135,069,351
JBrowse link
G KMT2A lysine methyltransferase 2A acts_upstream_of_or_within ISO (MGI:3625774|PMID:16618927)
(MGI:3530206|PMID:15741318)
MGI PMID:15741318 PMID:16618927 MGI:3530206 MGI:3625774 NCBI chr 9:45,743,566...45,828,559 JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr12:38,450,708...38,457,583
Ensembl chr12:38,450,708...38,456,139
JBrowse link
G LOC102159820 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4429791|PMID:19357712)
(MGI:3835694|PMID:18849982)
Ensembl
MGI
PMID:18849982 PMID:19357712 GO_REF:0000107 MGI:3835694 MGI:4429791 NCBI chr 5:3,114,410...3,203,378
Ensembl chr 5:2,980,069...3,204,803
JBrowse link
G LOC102161418 interferon-induced transmembrane protein 1-like acts_upstream_of_or_within ISO (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 NCBI chr 2:156,364...157,650 JBrowse link
G LRP5 LDL receptor related protein 5 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:3045836|PMID:15142971)
GO_Central
MGI
Ensembl
PMID:15142971 PMID:21873635 GO_REF:0000107 MGI:3045836 NCBI chr 2:4,533,721...4,653,997
Ensembl chr 2:4,533,593...4,653,945
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3603992|PMID:16126904)
(MGI:3045836|PMID:15142971)
(MGI:4413372|PMID:19795512)
MGI PMID:15142971 PMID:16126904 PMID:19795512 MGI:3045836 MGI:3603992 MGI:4413372 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2387913|PMID:12242306) Ensembl
MGI
PMID:12242306 GO_REF:0000107 MGI:2387913 NCBI chr 1:202,317,458...202,604,308
Ensembl chr 1:202,317,453...202,607,061
JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4948979|PMID:21465616) Ensembl
MGI
PMID:21465616 GO_REF:0000107 MGI:4948979 NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,377...5,632,608
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,766,897...49,771,634
JBrowse link
G NEUROD1 neuronal differentiation 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3613103|PMID:16368089) Ensembl
MGI
PMID:16368089 GO_REF:0000107 MGI:3613103 NCBI chr15:87,175,629...87,179,953
Ensembl chr15:87,175,764...87,179,961
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:3624254|PMID:16496285)
(MGI:2136068|PMID:11418863), (MGI:3042338|PMID:15004567)
(MGI:3056019|PMID:15302604)
(MGI:2155575|PMID:11311163)
MGI PMID:11311163 PMID:11418863 PMID:15004567 PMID:15302604 PMID:16496285 MGI:2136068 MGI:2155575 MGI:3042338 MGI:3056019 MGI:3624254 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,349,965...73,360,618
JBrowse link
G NR2F2 nuclear receptor subfamily 2 group F member 2 acts_upstream_of_or_within ISO (MGI:3578605|PMID:15829524) MGI PMID:15829524 MGI:3578605 NCBI chr 7:83,076,119...83,090,250
Ensembl chr 7:83,076,144...83,090,536
JBrowse link
G OTX1 orthodenticle homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3039992|PMID:15105370) Ensembl
MGI
PMID:15105370 GO_REF:0000107 MGI:3039992 NCBI chr 3:78,895,142...78,903,045
Ensembl chr 3:78,895,882...78,903,217
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2656991|PMID:12652306)
(MGI:2136711|PMID:11412024)
(MGI:1197794|PMID:9501024)
MGI PMID:9501024 PMID:11412024 PMID:12652306 MGI:1197794 MGI:2136711 MGI:2656991 NCBI chr 1:186,028,575...186,039,026
Ensembl chr 1:186,028,575...186,038,229
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within ISO (MGI:2386059|PMID:12196586)
(MGI:3578670|PMID:15917450)
MGI PMID:12196586 PMID:15917450 MGI:2386059 MGI:3578670 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,971,567...29,001,200
JBrowse link
G PBX1 PBX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2151355|PMID:11566859) Ensembl
MGI
PMID:11566859 GO_REF:0000107 MGI:2151355 NCBI chr 4:85,824,590...86,170,328
Ensembl chr 4:85,824,666...86,170,191
JBrowse link
G PCGF2 polycomb group ring finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:80640|PMID:8625838)
(MGI:3530206|PMID:15741318)
Ensembl
MGI
PMID:8625838 PMID:15741318 GO_REF:0000107 MGI:3530206 MGI:80640 NCBI chr12:23,362,631...23,375,779
Ensembl chr12:23,362,654...23,375,775
JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:228,854,587...229,308,054
Ensembl chr 1:228,854,595...229,308,906
JBrowse link
G PDS5A PDS5 cohesin associated factor A acts_upstream_of_or_within ISO (MGI:3847057|PMID:19412548) MGI PMID:19412548 MGI:3847057 NCBI chr 8:30,988,366...31,134,331
Ensembl chr 8:30,988,368...31,134,320
JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2154839|PMID:11784046)
(MGI:2154839|PMID:11784046), (MGI:60925|PMID:8388780)
Ensembl
MGI
PMID:8388780 PMID:11784046 GO_REF:0000107 MGI:2154839 MGI:60925 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,267...18,458,625
JBrowse link
G RING1 ring finger protein 1 acts_upstream_of_or_within ISO (MGI:1926247|PMID:11060235), (MGI:3628673|PMID:16624538)
(MGI:3628673|PMID:16624538)
MGI PMID:11060235 PMID:16624538 MGI:1926247 MGI:3628673 NCBI chr 7:25,251,507...25,255,526
Ensembl chr 7:25,251,486...25,255,526
JBrowse link
G SCMH1 Scm polycomb group protein homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3703453|PMID:17215307) Ensembl
MGI
PMID:17215307 GO_REF:0000107 MGI:3703453 NCBI chr 6:169,999,763...170,189,357
Ensembl chr 6:169,999,818...170,189,354
JBrowse link
G SF3B1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (MGI:3530206|PMID:15741318) MGI PMID:15741318 MGI:3530206 NCBI chr15:101,274,968...101,338,018
Ensembl chr15:101,191,854...101,338,023
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,133...75,345,926
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1928592|PMID:11118883)
(MGI:2135419|PMID:11389830)
MGI PMID:11118883 PMID:11389830 MGI:1928592 MGI:2135419 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1201281|PMID:9529255), (MGI:2136068|PMID:11418863)
(MGI:2667288|PMID:12842913)
Ensembl
MGI
PMID:9529255 PMID:11418863 PMID:12842913 GO_REF:0000107 MGI:1201281 MGI:2136068 MGI:2667288 NCBI chr 1:97,415,360...97,511,388
Ensembl chr 1:97,415,716...97,511,358
JBrowse link
G SMAD4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:3051711|PMID:15215210) MGI PMID:15215210 MGI:3051711 NCBI chr 1:100,521,843...100,633,501
Ensembl chr 1:100,514,791...100,628,029
JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5438143|PMID:22987639) Ensembl
MGI
PMID:22987639 GO_REF:0000107 MGI:5438143 NCBI chr18:19,450,730...19,478,796
Ensembl chr18:19,450,734...19,479,374
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:3614586|PMID:16399080)
(MGI:3039048|PMID:15084464)
MGI PMID:15084464 PMID:16399080 MGI:3039048 MGI:3614586 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,143...51,296,725
JBrowse link
G TBXT T-box transcription factor T acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr 1:2,717,165...2,725,561
Ensembl chr 1:2,717,165...2,724,976
JBrowse link
G TCF15 transcription factor 15 acts_upstream_of_or_within ISO (MGI:84545|PMID:8955271) MGI PMID:8955271 MGI:84545 NCBI chr17:34,626,682...34,632,881
Ensembl chr17:34,626,706...34,632,388
JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:29,537,874...29,544,686
Ensembl chr13:29,540,314...29,543,893
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3695190|PMID:16845371) Ensembl
MGI
PMID:16845371 GO_REF:0000107 MGI:3695190 NCBI chr 1:240,842,735...240,918,267
Ensembl chr 1:240,859,270...240,918,528
JBrowse link
G TSHZ1 teashirt zinc finger homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3720547|PMID:17586487) Ensembl
MGI
PMID:17586487 GO_REF:0000107 MGI:3720547 NCBI chr 1:148,905,179...148,984,984
Ensembl chr 1:148,902,346...148,984,832
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3844764|PMID:19334287) Ensembl
MGI
PMID:19334287 GO_REF:0000107 MGI:3844764 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,446...67,238,324
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3835694|PMID:18849982) MGI PMID:18849982 MGI:3835694 NCBI chr 4:90,051,994...90,080,701
Ensembl chr 4:90,053,380...90,080,656
JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (MGI:3044441|PMID:15148409) MGI PMID:15148409 MGI:3044441 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,154,086...51,202,176
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3039991|PMID:15073149), (MGI:4413372|PMID:19795512) MGI PMID:15073149 PMID:19795512 MGI:3039991 MGI:4413372 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
G YY1 YY1 transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3628673|PMID:16624538) Ensembl
MGI
PMID:16624538 GO_REF:0000107 MGI:3628673 NCBI chr 7:121,132,168...121,170,699
Ensembl chr 7:121,131,917...121,170,697
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1859075|PMID:10835630) Ensembl
MGI
PMID:10835630 GO_REF:0000107 MGI:1859075 NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
JBrowse link
G ZIC3 Zic family member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624254|PMID:16496285) Ensembl
MGI
PMID:16496285 GO_REF:0000107 MGI:3624254 NCBI chr  X:112,592,951...112,605,087
Ensembl chr  X:112,592,953...112,604,068
JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AURKA aurora kinase A acts_upstream_of_or_within ISO (MGI:5449118|PMID:22939930) MGI PMID:22939930 MGI:5449118 NCBI chr17:56,954,838...56,972,435 JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1889107|PMID:10964473) Ensembl
MGI
PMID:10964473 GO_REF:0000107 MGI:1889107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
G CDX1 caudal type homeobox 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:151,202,842...151,217,132
Ensembl chr 2:151,202,807...151,222,047
JBrowse link
G CDX2 caudal type homeobox 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057
JBrowse link
G CDX4 caudal type homeobox 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:59,089,131...59,100,958
Ensembl chr  X:59,091,716...59,102,542
JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3042338|PMID:15004567)
(MGI:3776330|PMID:18241853)
Ensembl
MGI
PMID:15004567 PMID:18241853 GO_REF:0000107 MGI:3042338 MGI:3776330 NCBI chr 1:207,817,095...207,821,800
Ensembl chr 1:207,818,042...207,821,996
JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1353237|PMID:10662781) Ensembl
MGI
PMID:10662781 GO_REF:0000107 MGI:1353237 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G DDIT3 DNA damage inducible transcript 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:22,785,441...22,789,867
Ensembl chr 5:22,785,441...22,791,134
JBrowse link
G GPC3 glypican 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1889107|PMID:10964473) Ensembl
MGI
PMID:10964473 GO_REF:0000107 MGI:1889107 NCBI chr  X:109,536,495...109,973,605
Ensembl chr  X:109,536,495...109,973,607
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (MGI:3530185|PMID:15680351) MGI PMID:15680351 MGI:3530185 NCBI chr 4:56,859,640...56,863,807
Ensembl chr 4:56,859,663...56,863,789
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3530185|PMID:15680351) Ensembl
MGI
PMID:15680351 GO_REF:0000107 MGI:3530185 NCBI chr 1:37,219,887...37,231,321
Ensembl chr 1:37,219,883...37,231,385
JBrowse link
G LDB1 LIM domain binding 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2448170|PMID:12490556) Ensembl
MGI
PMID:12490556 GO_REF:0000107 MGI:2448170 NCBI chr14:113,114,302...113,126,455
Ensembl chr14:113,113,177...113,126,819
JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:1346311|PMID:10529425) MGI PMID:10529425 MGI:1346311 NCBI chr12:38,450,708...38,457,583
Ensembl chr12:38,450,708...38,456,139
JBrowse link
G LOC100524517 left-right determination factor 2 acts_upstream_of_or_within ISO (MGI:3042338|PMID:15004567) MGI PMID:15004567 MGI:3042338 NCBI chr10:13,815,157...13,819,249 JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,349,965...73,360,618
JBrowse link
G PGAP1 post-GPI attachment to proteins inositol deacylase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1346311|PMID:10529425) Ensembl
MGI
PMID:10529425 GO_REF:0000107 MGI:1346311 NCBI chr15:100,733,552...100,820,603
Ensembl chr15:100,733,555...100,820,585
JBrowse link
G RNF2 ring finger protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2389282|PMID:12183370) Ensembl
MGI
PMID:12183370 GO_REF:0000107 MGI:2389282 NCBI chr 9:126,172,637...126,284,567
Ensembl chr 9:126,172,301...126,287,623
JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:95,460,046...95,463,428
Ensembl chr 3:95,459,937...95,464,066
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:2176418|PMID:11731796) MGI PMID:11731796 MGI:2176418 NCBI chr 6:64,188,265...64,242,596
Ensembl chr 6:64,188,029...64,241,556
JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (MGI:3044041|PMID:15155583) MGI PMID:15155583 MGI:3044041 NCBI chr 1:53,836,939...53,867,460
Ensembl chr 1:53,837,454...53,867,475
JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO (MGI:3776330|PMID:18241853) MGI PMID:18241853 MGI:3776330 NCBI chr13:29,537,874...29,544,686
Ensembl chr13:29,540,314...29,543,893
JBrowse link
G WLS Wnt ligand secretion mediator involved_in ISO (MGI:4397730|PMID:19841259) UniProt PMID:19841259 MGI:4397730 NCBI chr 6:144,242,639...144,529,659
Ensembl chr 6:144,242,656...144,555,880
JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:17,627,291...17,681,197
Ensembl chr12:17,628,726...17,681,572
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3580203|PMID:15870281) Ensembl
MGI
PMID:15870281 GO_REF:0000107 MGI:3580203 NCBI chr 5:33,725,432...33,852,952
Ensembl chr 5:33,725,444...33,849,976
JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:110,913,990...110,921,388
Ensembl chr15:110,911,567...110,921,353
JBrowse link
G TASOR transcription activation suppressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:38,491,048...38,557,256
Ensembl chr13:38,491,055...38,557,931
JBrowse link
G TBX3 T-box transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,767
JBrowse link
G TCF7L1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:3043490 NCBI chr 3:59,438,152...59,458,988 JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO (MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:1303194 NCBI chr13:29,537,874...29,544,686
Ensembl chr13:29,540,314...29,543,893
JBrowse link
G WNT5A Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4839483|PMID:20630950) Ensembl
MGI
PMID:20630950 GO_REF:0000107 MGI:4839483 NCBI chr  X:57,150,884...57,174,367
Ensembl chr  X:57,150,578...57,175,352
JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1891551|PMID:11029008) Ensembl
MGI
PMID:11029008 GO_REF:0000107 MGI:1891551 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,154,086...51,202,176
JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2181244|PMID:12001066) Ensembl
MGI
PMID:12001066 GO_REF:0000107 MGI:2181244 NCBI chr 1:198,815...211,346
Ensembl chr 1:199,231...211,344
JBrowse link
G DLL3 delta like canonical Notch ligand 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2181244|PMID:12001066) Ensembl
MGI
PMID:12001066 GO_REF:0000107 MGI:2181244 NCBI chr 6:48,135,738...48,155,373
Ensembl chr 6:48,147,730...48,155,373
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2181244|PMID:12001066) Ensembl
MGI
PMID:12001066 GO_REF:0000107 MGI:2181244 NCBI chr 3:1,721,044...1,819,426
Ensembl chr 3:1,810,892...1,820,048
JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2181244|PMID:12001066) Ensembl
MGI
PMID:12001066 GO_REF:0000107 MGI:2181244
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3611958|PMID:16314491) Ensembl
MGI
PMID:16314491 GO_REF:0000107 MGI:3611958 NCBI chr17:15,750,487...15,762,982
Ensembl chr17:15,749,835...15,761,215
JBrowse link
G FOXH1 forkhead box H1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3055632|PMID:15363409) Ensembl
MGI
PMID:15363409 GO_REF:0000107 MGI:3055632 NCBI chr 4:320,610...324,570
Ensembl chr 4:320,537...324,481
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:87488|PMID:9136932) MGI PMID:9136932 MGI:87488 NCBI chr14:14,858,470...14,938,156
Ensembl chr14:14,858,159...14,939,941
JBrowse link
epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2677178|PMID:14511481) Ensembl
MGI
PMID:14511481 GO_REF:0000107 MGI:2677178 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,349,965...73,360,618
JBrowse link
fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206
JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FEZF1 FEZ family zinc finger 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702790|PMID:16971467) Ensembl
MGI
PMID:16971467 GO_REF:0000107 MGI:3702790 NCBI chr18:24,881,850...24,884,790
Ensembl chr18:24,879,030...24,884,920
JBrowse link
G FEZF2 FEZ family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702790|PMID:16971467) Ensembl
MGI
PMID:16971467 GO_REF:0000107 MGI:3702790 NCBI chr13:43,953,914...43,958,419
Ensembl chr13:43,953,883...43,958,430
JBrowse link
G SIX3 SIX homeobox 3 acts_upstream_of_or_within ISO (MGI:3772426|PMID:18094027) MGI PMID:18094027 MGI:3772426 NCBI chr 3:95,521,330...95,527,004
Ensembl chr 3:95,521,333...95,525,436
JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3772426|PMID:18094027) Ensembl
MGI
PMID:18094027 GO_REF:0000107 MGI:3772426 NCBI chr 5:15,010,607...15,015,007
Ensembl chr 5:15,010,985...15,014,079
JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:892757|PMID:9169845) Ensembl
MGI
PMID:9169845 GO_REF:0000107 MGI:892757 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,971,567...29,001,200
JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4360856|PMID:19686689)
(MGI:4361775|PMID:19805295)
Ensembl
MGI
PMID:19686689 PMID:19805295 GO_REF:0000107 MGI:4360856 MGI:4361775 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G WNT2 Wnt family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4360856|PMID:19686689) Ensembl
MGI
PMID:19686689 GO_REF:0000107 MGI:4360856 NCBI chr18:28,945,825...28,993,969
Ensembl chr18:28,946,277...29,028,107
JBrowse link
G WNT2B Wnt family member 2B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4360856|PMID:19686689) Ensembl
MGI
PMID:19686689 GO_REF:0000107 MGI:4360856 NCBI chr 4:107,906,141...107,923,343
Ensembl chr 4:107,903,502...107,921,118
JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EN1 engrailed homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3525936|PMID:15607945) Ensembl
MGI
PMID:15607945 GO_REF:0000107 MGI:3525936 NCBI chr15:24,402,605...24,408,377
Ensembl chr15:24,402,605...24,407,798
JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3720541|PMID:17601531) Ensembl
MGI
PMID:17601531 GO_REF:0000107 MGI:3720541 NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,210...112,814,134
JBrowse link
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (MGI:3624192|PMID:16651541) MGI PMID:16651541 MGI:3624192 NCBI chr15:136,029,393...136,032,568
Ensembl chr15:136,028,865...136,032,117
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008), (MGI:4413372|PMID:19795512) MGI PMID:11029008 PMID:19795512 MGI:1891551 MGI:4413372 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G WNT1 Wnt family member 1 acts_upstream_of_or_within ISO (MGI:59176|PMID:2205396) MGI PMID:2205396 MGI:59176 NCBI chr 5:15,010,607...15,015,007
Ensembl chr 5:15,010,985...15,014,079
JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SSBP3 single stranded DNA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:157,911,583...158,081,478
Ensembl chr 6:157,911,651...158,081,420
JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:76584|PMID:8555108) Ensembl
MGI
PMID:8555108 GO_REF:0000107 MGI:76584 NCBI chr 5:15,010,607...15,015,007
Ensembl chr 5:15,010,985...15,014,079
JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GBX2 gastrulation brain homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624192|PMID:16651541) Ensembl
MGI
PMID:16651541 GO_REF:0000107 MGI:3624192 NCBI chr15:136,029,393...136,032,568
Ensembl chr15:136,028,865...136,032,117
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2149154|PMID:11500373) Ensembl
MGI
PMID:11500373 GO_REF:0000107 MGI:2149154 NCBI chr13:131,135,970...131,137,865
Ensembl chr13:131,135,724...131,138,236
JBrowse link
G HES3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (MGI:2149134|PMID:11522634) MGI PMID:11522634 MGI:2149134 NCBI chr 6:67,134,259...67,138,639
Ensembl chr 6:67,131,570...67,135,292
JBrowse link
G KDM2B lysine demethylase 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:31,057,121...31,203,093
Ensembl chr14:31,057,121...31,203,092
JBrowse link
negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TBX18 T-box transcription factor 18 involved_in ISO (MGI:3722519|PMID:17584735) BHF-UCL PMID:17584735 MGI:3722519 NCBI chr 1:53,836,939...53,867,460
Ensembl chr 1:53,837,454...53,867,475
JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FUZ fuzzy planar cell polarity protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr 6:54,823,680...54,830,425
Ensembl chr 6:54,823,666...54,829,508
JBrowse link
G OFD1 OFD1 centriole and centriolar satellite protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr  X:10,361,403...10,415,502 JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:1,721,044...1,819,426
Ensembl chr 3:1,810,892...1,820,048
JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5317364|PMID:21795391) Ensembl
MGI
PMID:21795391 GO_REF:0000107 MGI:5317364
neural plate anterior/posterior regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELSR2 cadherin EGF LAG seven-pass G-type receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:110,819,422...110,845,354
Ensembl chr 4:110,819,427...110,845,493
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLD6 phospholipase D family member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:61,057,896...61,060,681
Ensembl chr12:61,057,944...61,060,679
JBrowse link
G TDRD5 tudor domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:121,245,080...121,337,339
Ensembl chr 9:121,211,324...121,332,219
JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
G WNT8A Wnt family member 8A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3609071|PMID:16256739) Ensembl
MGI
PMID:16256739 GO_REF:0000107 MGI:3609071 NCBI chr 2:140,103,322...140,113,682
Ensembl chr 2:140,103,830...140,110,563
JBrowse link
pole plasm assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WDR77 WD repeat domain 77 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:108,907,192...108,915,594
Ensembl chr 4:108,907,332...108,941,037
JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ETS2 ETS proto-oncogene 2, transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5546318|PMID:23552073) Ensembl
MGI
PMID:23552073 GO_REF:0000107 MGI:5546318 NCBI chr13:202,464,341...202,483,534
Ensembl chr13:202,468,721...202,484,610
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr17:29,997,397...30,001,704
Ensembl chr17:29,997,400...30,001,707
JBrowse link
G GDF3 growth differentiation factor 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3611720|PMID:16368929) Ensembl
MGI
PMID:16368929 GO_REF:0000107 MGI:3611720 NCBI chr 5:62,835,926...62,841,827
Ensembl chr 5:62,835,979...62,841,665
JBrowse link
G HHEX hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:4950786|PMID:21445260) MGI PMID:21445260 MGI:4950786 NCBI chr14:104,194,424...104,199,684
Ensembl chr14:104,194,343...104,200,221
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2157654|PMID:11291865) Ensembl
MGI
PMID:11291865 GO_REF:0000107 MGI:2157654 NCBI chr12:38,450,708...38,457,583
Ensembl chr12:38,450,708...38,456,139
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:4950786|PMID:21445260) MGI PMID:21445260 MGI:4950786 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,349,965...73,360,618
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr 1:186,028,575...186,039,026
Ensembl chr 1:186,028,575...186,038,229
JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1312998|PMID:9799237) Ensembl
MGI
PMID:9799237 GO_REF:0000107 MGI:1312998 NCBI chr 7:38,213,300...38,223,686
Ensembl chr 7:38,213,063...38,222,140
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4413372|PMID:19795512) Ensembl
MGI
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr13:76,945,318...77,148,521
Ensembl chr13:76,945,358...77,147,531
JBrowse link
regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDX1 caudal type homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:151,202,842...151,217,132
Ensembl chr 2:151,202,807...151,222,047
JBrowse link
G CDX2 caudal type homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057
JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:198,815...211,346
Ensembl chr 1:199,231...211,344
JBrowse link
G DMRT2 doublesex and mab-3 related transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3820487|PMID:17974128) Ensembl
MGI
PMID:17974128 GO_REF:0000107 MGI:3820487 NCBI chr 1:220,745,493...220,799,779
Ensembl chr 1:220,745,492...220,757,313
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4367298|PMID:19779553) Ensembl
MGI
PMID:19779553 GO_REF:0000107 MGI:4367298 NCBI chr 3:1,721,044...1,819,426
Ensembl chr 3:1,810,892...1,820,048
JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:72973|PMID:7789282) Ensembl
MGI
PMID:7789282 GO_REF:0000107 MGI:72973
G PAX3 paired box 3 acts_upstream_of_or_within ISO (MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chr15:124,093,803...124,193,041
Ensembl chr15:124,095,224...124,193,011
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578715|PMID:15889094) Ensembl
MGI
PMID:15889094 GO_REF:0000107 MGI:3578715 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,715,620...114,037,249
JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:36,271,154...36,300,240
Ensembl chr  X:36,271,223...36,304,183
JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:82985|PMID:8887324) Ensembl
MGI
PMID:8887324 GO_REF:0000107 MGI:82985 NCBI chr10:52,586,089...52,596,154 JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4421275|PMID:19913509) Ensembl
MGI
PMID:19913509 GO_REF:0000107 MGI:4421275 NCBI chr 4:76,854,218...76,857,143
Ensembl chr 4:76,852,230...76,857,139
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3821807|PMID:18794329) Ensembl
MGI
PMID:18794329 GO_REF:0000107 MGI:3821807 NCBI chr15:31,159,214...31,295,891
Ensembl chr15:31,159,217...31,295,896
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr17:29,997,397...30,001,704
Ensembl chr17:29,997,400...30,001,707
JBrowse link
G GDF3 growth differentiation factor 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3611720|PMID:16368929) Ensembl
MGI
PMID:16368929 GO_REF:0000107 MGI:3611720 NCBI chr 5:62,835,926...62,841,827
Ensembl chr 5:62,835,979...62,841,665
JBrowse link
G KDM6A lysine demethylase 6A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5448135|PMID:22949634) Ensembl
MGI
PMID:22949634 GO_REF:0000107 MGI:5448135 NCBI chr  X:39,953,764...40,154,197
Ensembl chr  X:39,953,759...40,154,194
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2157654|PMID:11291865) Ensembl
MGI
PMID:11291865 GO_REF:0000107 MGI:2157654 NCBI chr12:38,450,708...38,457,583
Ensembl chr12:38,450,708...38,456,139
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:55,322,016...55,327,600
Ensembl chr 7:55,322,010...55,325,732
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:4459001|PMID:20346937)
GO_Central
MGI
PMID:20346937 PMID:21873635 MGI:4459001 NCBI chr 7:55,341,941...55,345,824
Ensembl chr 7:55,343,134...55,345,904
JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5438472|PMID:21998026) Ensembl
MGI
PMID:21998026 GO_REF:0000107 MGI:5438472
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr 1:186,028,575...186,039,026
Ensembl chr 1:186,028,575...186,038,229
JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chr  X:87,315,355...87,319,580
Ensembl chr  X:87,315,352...87,319,583
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within
ISO (MGI:3613215|PMID:16326386)
(MGI:4459001|PMID:20346937)
UniProt
MGI
PMID:16326386 PMID:20346937 MGI:3613215 MGI:4459001 NCBI chr 1:82,427,956...82,432,844
Ensembl chr 1:82,423,391...82,432,638
JBrowse link
G SMAD4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1195384|PMID:9420335) Ensembl
MGI
PMID:9420335 GO_REF:0000107 MGI:1195384 NCBI chr 1:100,521,843...100,633,501
Ensembl chr 1:100,514,791...100,628,029
JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4459001|PMID:20346937) Ensembl
MGI
PMID:20346937 GO_REF:0000107 MGI:4459001 NCBI chr 3:18,271,983...18,277,864
Ensembl chr 3:18,271,984...18,277,573
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr14:29,390,903...29,400,454
Ensembl chr14:29,390,335...29,400,437
JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COBL cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr 9:136,850,521...137,055,249 JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3034157|PMID:14960495) Ensembl
MGI
PMID:14960495 GO_REF:0000107 MGI:3034157 NCBI chr 1:198,815...211,346
Ensembl chr 1:199,231...211,344
JBrowse link
G MEOX1 mesenchyme homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2669571|PMID:12925591) Ensembl
MGI
PMID:12925591 GO_REF:0000107 MGI:2669571 NCBI chr12:19,431,397...19,452,430
Ensembl chr12:19,431,029...19,452,007
JBrowse link
G MEOX2 mesenchyme homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2669571|PMID:12925591) Ensembl
MGI
PMID:12925591 GO_REF:0000107 MGI:2669571 NCBI chr 9:84,945,178...85,009,939
Ensembl chr 9:84,943,197...85,010,157
JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI1 abl interactor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3577662|PMID:15755804) Ensembl
MGI
PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr10:48,939,407...49,069,269
Ensembl chr10:48,939,445...49,069,445
JBrowse link
G ATM ATM serine/threonine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624894|PMID:16687486) Ensembl
MGI
PMID:16687486 GO_REF:0000107 MGI:3624894 NCBI chr 9:36,620,656...36,759,555
Ensembl chr 9:36,620,658...36,759,554
JBrowse link
G AXIN2 axin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3037351|PMID:12636920) Ensembl
MGI
PMID:12636920 GO_REF:0000107 MGI:3037351 NCBI chr12:12,311,293...12,343,207
Ensembl chr12:12,311,293...12,343,200
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702797|PMID:16943278) Ensembl
MGI
PMID:16943278 GO_REF:0000107 MGI:3702797 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,793
JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:264,277,549...264,301,731
Ensembl chr 1:264,276,572...264,301,725
JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
ISO (MGI:5545944|PMID:23072809)
(MGI:3578712|PMID:15902259)
UniProt
MGI
PMID:15902259 PMID:23072809 MGI:3578712 MGI:5545944 NCBI chr 1:198,815...211,346
Ensembl chr 1:199,231...211,344
JBrowse link
G DLL3 delta like canonical Notch ligand 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3620337|PMID:15170697)
(MGI:1095777|PMID:9272948)
Ensembl
MGI
PMID:9272948 PMID:15170697 GO_REF:0000107 MGI:1095777 MGI:3620337 NCBI chr 6:48,135,738...48,155,373
Ensembl chr 6:48,147,730...48,155,373
JBrowse link
G EP300 E1A binding protein p300 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3583034|PMID:15937931) Ensembl
MGI
PMID:15937931 GO_REF:0000107 MGI:3583034 NCBI chr 5:7,311,165...7,394,515
Ensembl chr 5:7,311,171...7,393,760
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chr15:31,159,214...31,295,891
Ensembl chr15:31,159,217...31,295,896
JBrowse link
G FOXB1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:111,997,638...112,000,550
Ensembl chr 1:111,997,640...112,000,550
JBrowse link
G FOXC1 forkhead box C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:837,088...840,593
Ensembl chr 7:837,171...838,805
JBrowse link
G FOXC2 forkhead box C2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:2,552,141...2,555,041
Ensembl chr 6:2,552,862...2,554,367
JBrowse link
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928688|PMID:11124112) Ensembl
MGI
PMID:11124112 GO_REF:0000107 MGI:1928688 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659
JBrowse link
G HES7 hes family bHLH transcription factor 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3046002|PMID:15170214)
(MGI:2152470|PMID:11641270), (MGI:4367298|PMID:19779553)
Ensembl
MGI
PMID:11641270 PMID:15170214 PMID:19779553 GO_REF:0000107 MGI:2152470 MGI:3046002 MGI:4367298 NCBI chr12:53,334,350...53,339,336
Ensembl chr12:53,334,901...53,337,376
JBrowse link
G KAT2A lysine acetyltransferase 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709911|PMID:17325035)
(MGI:3583034|PMID:15937931)
Ensembl
MGI
PMID:15937931 PMID:17325035 GO_REF:0000107 MGI:3583034 MGI:3709911 NCBI chr12:20,638,493...20,647,464
Ensembl chr12:20,638,493...20,647,463
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3510574|PMID:15545629)
(MGI:1334099|PMID:10090727)
Ensembl
MGI
PMID:10090727 PMID:15545629 GO_REF:0000107 MGI:1334099 MGI:3510574 NCBI chr 8:113,824,511...113,944,078
Ensembl chr 8:113,824,547...113,944,078
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3774705|PMID:18234727) Ensembl
MGI
PMID:18234727 GO_REF:0000107 MGI:3774705 NCBI chr 3:1,721,044...1,819,426
Ensembl chr 3:1,810,892...1,820,048
JBrowse link
G LOC100155738 protocadherin-8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2451199|PMID:12591245) Ensembl
MGI
PMID:12591245 GO_REF:0000107 MGI:2451199 NCBI chr11:26,127,398...26,133,481
Ensembl chr11:26,127,399...26,132,123
JBrowse link
G LOC102161418 interferon-induced transmembrane protein 1-like acts_upstream_of_or_within ISO (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 NCBI chr 2:156,364...157,650 JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G MED12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:4839544 NCBI chr  X:57,150,884...57,174,367
Ensembl chr  X:57,150,578...57,175,352
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:3578712 NCBI chr 7:55,341,941...55,345,824
Ensembl chr 7:55,343,134...55,345,904
JBrowse link
G MIB1 MIB E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3603078|PMID:16000382) Ensembl
MGI
PMID:16000382 GO_REF:0000107 MGI:3603078 NCBI chr 6:106,917,995...107,043,144
Ensembl chr 6:106,914,006...107,040,106
JBrowse link
G MSGN1 mesogenin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928575|PMID:11124811), (MGI:5545970|PMID:21750544) Ensembl
MGI
PMID:11124811 PMID:21750544 GO_REF:0000107 MGI:1928575 MGI:5545970 NCBI chr 3:120,033,980...120,034,624
Ensembl chr 3:120,034,043...120,034,624
JBrowse link
G MYF5 myogenic factor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:78390|PMID:8565825)
(MGI:1861090|PMID:10929709)
(MGI:3849775|PMID:19531352)
Ensembl
MGI
PMID:8565825 PMID:10929709 PMID:19531352 GO_REF:0000107 MGI:1861090 MGI:3849775 MGI:78390 NCBI chr 5:100,753,440...100,755,558
Ensembl chr 5:100,752,890...100,755,494
JBrowse link
G MYF6 myogenic factor 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:76810|PMID:7588068) Ensembl
MGI
PMID:7588068 GO_REF:0000107 MGI:76810 NCBI chr 5:100,762,918...100,764,771
Ensembl chr 5:100,762,910...100,765,704
JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr15:88,425,861...88,528,417
Ensembl chr15:88,425,141...88,528,231
JBrowse link
G NKX3-1 NK3 homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9621431) Ensembl
BHF-UCL
PMID:9621431 GO_REF:0000107 NCBI chr14:7,783,296...7,787,036
Ensembl chr14:7,782,421...7,787,034
JBrowse link
G NLE1 notchless homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5608942|PMID:24875805) Ensembl
MGI
PMID:24875805 GO_REF:0000107 MGI:5608942 NCBI chr12:40,035,518...40,044,395
Ensembl chr12:40,035,547...40,044,399
JBrowse link
G PALB2 partner and localizer of BRCA2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4459579|PMID:20484223) Ensembl
MGI
PMID:20484223 GO_REF:0000107 MGI:4459579 NCBI chr 3:22,586,881...22,612,837
Ensembl chr 3:22,586,856...22,612,835
JBrowse link
G PAX1 paired box 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3590033|PMID:16093716) Ensembl
MGI
PMID:16093716 GO_REF:0000107 MGI:3590033 NCBI chr17:29,421,117...29,436,481
Ensembl chr17:29,422,129...29,431,990
JBrowse link
G PLXNA2 plexin A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19666519) Ensembl
BHF-UCL
PMID:19666519 GO_REF:0000107 NCBI chr 9:134,584,760...134,800,471
Ensembl chr 9:134,584,406...134,796,064
JBrowse link
G POFUT1 protein O-fucosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2660984|PMID:12697902) Ensembl
MGI
PMID:12697902 GO_REF:0000107 MGI:2660984 NCBI chr17:35,856,557...35,883,918
Ensembl chr17:35,856,574...35,883,001
JBrowse link
G POGLUT1 protein O-glucosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1267118|PMID:9636176) Ensembl
MGI
PMID:9636176 GO_REF:0000107 MGI:1267118 NCBI chr13:140,763,231...140,793,645
Ensembl chr13:140,764,185...140,793,596
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624894|PMID:16687486) Ensembl
MGI
PMID:16687486 GO_REF:0000107 MGI:3624894 NCBI chr 4:79,687,375...79,850,146
Ensembl chr 4:79,687,359...79,847,281
JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553)
(MGI:87649|PMID:9153393)
Ensembl
MGI
PMID:9153393 PMID:10557208 PMID:19779553 GO_REF:0000107 MGI:1347695 MGI:4367298 MGI:87649 NCBI chr 7:96,478,179...96,567,884
Ensembl chr 7:96,478,181...96,569,132
JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553) MGI PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 NCBI chr10:14,532,556...14,561,862
Ensembl chr10:14,532,550...14,561,858
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4367298|PMID:19779553) Ensembl
MGI
PMID:19779553 GO_REF:0000107 MGI:4367298 NCBI chr 8:19,933,035...20,166,746
Ensembl chr 8:19,922,779...20,166,755
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in
ISO (MGI:3715395|PMID:17531978)
(MGI:3613215|PMID:16326386)
MGI
UniProt
PMID:16326386 PMID:17531978 MGI:3613215 MGI:3715395 NCBI chr 1:82,427,956...82,432,844
Ensembl chr 1:82,423,391...82,432,638
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3037488|PMID:14745966) Ensembl
MGI
PMID:14745966 GO_REF:0000107 MGI:3037488 NCBI chr14:2,803,840...3,035,384
Ensembl chr14:2,804,061...3,035,241
JBrowse link
G SEMA3C semaphorin 3C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19666519) Ensembl
BHF-UCL
PMID:19666519 GO_REF:0000107 NCBI chr 9:99,114,649...99,432,683
Ensembl chr 9:99,251,714...99,433,230
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:10654605)
(MGI:3618960|PMID:16467359)
BHF-UCL
MGI
PMID:10654605 PMID:16467359 MGI:3618960 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,133...75,345,926
JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618021|PMID:15183723) Ensembl
MGI
PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr 1:164,998,457...165,124,455
Ensembl chr 1:164,998,083...165,124,454
JBrowse link
G TBX18 T-box transcription factor 18 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3044041|PMID:15155583)
GO_Central
MGI
PMID:15155583 PMID:21873635 MGI:3044041 NCBI chr 1:53,836,939...53,867,460
Ensembl chr 1:53,837,454...53,867,475
JBrowse link
G TBX19 T-box transcription factor 19 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:82,663,121...82,699,261
Ensembl chr 4:82,663,581...82,697,813
JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3701028|PMID:16835439)
(MGI:3056222|PMID:15384171)
(MGI:64493|PMID:8293872)
GO_Central
MGI
PMID:8293872 PMID:15384171 PMID:16835439 PMID:21873635 MGI:3056222 MGI:3701028 MGI:64493 NCBI chr 1:2,717,165...2,725,561
Ensembl chr 1:2,717,165...2,724,976
JBrowse link
G TCAP titin-cap acts_upstream_of_or_within ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr12:22,651,666...22,652,904
Ensembl chr12:22,651,666...22,653,453
JBrowse link
G TCF15 transcription factor 15 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:84545|PMID:8955271) Ensembl
MGI
PMID:8955271 GO_REF:0000107 MGI:84545 NCBI chr17:34,626,682...34,632,881
Ensembl chr17:34,626,706...34,632,388
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr14:29,390,903...29,400,454
Ensembl chr14:29,390,335...29,400,437
JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709913|PMID:17320900) Ensembl
MGI
PMID:17320900 GO_REF:0000107 MGI:3709913 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
G TTN titin acts_upstream_of_or_within ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr15:84,226,953...84,501,320 JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (MGI:3037351|PMID:12636920)
(MGI:3611726|PMID:16291790), (MGI:64780|PMID:8299937)
MGI PMID:8299937 PMID:12636920 PMID:16291790 MGI:3037351 MGI:3611726 MGI:64780 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,154,086...51,202,176
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4413372|PMID:19795512) Ensembl
MGI
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
G XRCC2 X-ray repair cross complementing 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3708426|PMID:17116431) Ensembl
MGI
PMID:17116431 GO_REF:0000107 MGI:3708426 NCBI chr18:4,808,428...4,834,281
Ensembl chr18:4,808,469...4,835,804
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (MGI:3590396|PMID:16157277), (MGI:3624924|PMID:16598713) MGI PMID:16157277 PMID:16598713 MGI:3590396 MGI:3624924 NCBI chr15:7,498,879...7,631,347
Ensembl chr15:7,499,026...7,632,655
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,521,296...118,932,446
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,521,296...118,932,446
JBrowse link
specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDF11 growth differentiation factor 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3701017|PMID:16790475) Ensembl
MGI
PMID:16790475 GO_REF:0000107 MGI:3701017 NCBI chr 5:21,191,322...21,199,024
Ensembl chr 5:21,191,142...21,201,818
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEUROG1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:137,763,091...137,766,787
Ensembl chr 2:137,765,942...137,766,682
JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:137,675,245...137,678,880
Ensembl chr 2:137,672,407...137,678,612
JBrowse link
G WT1 WT1 transcription factor involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:28,411,467...28,456,007
Ensembl chr 2:28,411,794...28,456,003
JBrowse link
transforming growth factor beta receptor signaling pathway involved in primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2677178|PMID:14511481) Ensembl
MGI
PMID:14511481 GO_REF:0000107 MGI:2677178 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,349,965...73,360,618
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr14:97,487,854...97,490,118
Ensembl chr14:97,487,226...97,490,450
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3055483|PMID:15469977) MGI PMID:15469977 MGI:3055483 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3793375|PMID:18257070) Ensembl
MGI
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,133...75,345,926
JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO RGD PMID:25281935 RGD:12832757 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr15:88,425,861...88,528,417
Ensembl chr15:88,425,141...88,528,231
JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1858546|PMID:10809672) Ensembl
MGI
PMID:10809672 GO_REF:0000107 MGI:1858546 NCBI chr 1:145,508,658...145,697,017
Ensembl chr 1:145,508,636...145,697,009
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16518
    multicellular organismal process 8067
      pattern specification process 472
        regionalization 376
          anterior/posterior pattern specification 233
            anterior region determination 0
            anterior/posterior axis specification + 56
            anterior/posterior pattern specification involved in kidney development + 2
            anterior/posterior pattern specification, imaginal disc + 0
            compartment pattern specification + 4
            embryonic heart tube anterior/posterior pattern specification + 3
            forebrain anterior/posterior pattern specification 4
            foregut regionalization + 3
            neural plate anterior/posterior regionalization + 6
            periodic partitioning by pair rule gene 0
            posterior abdomen determination + 0
            rostrocaudal neural tube patterning + 14
            somitogenesis + 77
            spinal cord anterior/posterior patterning + 1
            thorax and anterior abdomen determination + 3
Path 2
Term Annotations click to browse term
  biological_process 16518
    developmental process 6318
      anatomical structure development 5857
        multicellular organism development 5358
          pattern specification process 472
            regionalization 376
              anterior/posterior pattern specification 233
                anterior region determination 0
                anterior/posterior axis specification + 56
                anterior/posterior pattern specification involved in kidney development + 2
                anterior/posterior pattern specification, imaginal disc + 0
                compartment pattern specification + 4
                embryonic heart tube anterior/posterior pattern specification + 3
                forebrain anterior/posterior pattern specification 4
                foregut regionalization + 3
                neural plate anterior/posterior regionalization + 6
                periodic partitioning by pair rule gene 0
                posterior abdomen determination + 0
                rostrocaudal neural tube patterning + 14
                somitogenesis + 77
                spinal cord anterior/posterior patterning + 1
                thorax and anterior abdomen determination + 3
paths to the root