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ONTOLOGY REPORT - ANNOTATIONS


Term:anterior/posterior pattern specification
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Accession:GO:0009952 term browser browse the term
Definition:The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
Synonyms:related_synonym: anterior/posterior pattern formation



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anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2A activin A receptor type 2A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118) MGI
Ensembl
PMID:10452853 PMID:16991118 GO_REF:0000107 MGI:1344152 MGI:3689276 NCBI chr15:4,177,333...4,259,056
Ensembl chr15:4,173,805...4,259,706
JBrowse link
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3695190|PMID:16845371)
(MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118)
(MGI:3689276|PMID:16991118), (MGI:3695190|PMID:16845371), (MGI:894948|PMID:9242489)
(MGI:3525050|PMID:15542835)
MGI
Ensembl
PMID:9242489 PMID:10452853 PMID:15542835 PMID:16845371 PMID:16991118 GO_REF:0000107 MGI:1344152 MGI:3525050 MGI:3689276 MGI:3695190 MGI:894948 NCBI chr13:23,237,699...23,276,086
Ensembl chr13:23,237,699...23,267,373
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3612223|PMID:16368932)
(MGI:3703483|PMID:17067568)
(MGI:3530707|PMID:15652703), (MGI:3578600|PMID:15872003)
MGI
Ensembl
PMID:15652703 PMID:15872003 PMID:16368932 PMID:17067568 GO_REF:0000107 MGI:3530707 MGI:3578600 MGI:3612223 MGI:3703483 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046
JBrowse link
G ALX1 ALX homeobox 1 acts_upstream_of_or_within ISO (MGI:1314705|PMID:9847249) MGI PMID:9847249 MGI:1314705 NCBI chr 5:96,761,683...96,785,125
Ensembl chr 5:96,763,685...96,785,165
JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1098911|PMID:9374397), (MGI:1314705|PMID:9847249)
(MGI:1314705|PMID:9847249)
MGI
Ensembl
PMID:9374397 PMID:9847249 GO_REF:0000107 MGI:1098911 MGI:1314705 NCBI chr 2:18,070,726...18,085,685
Ensembl chr 2:18,037,401...18,085,683
JBrowse link
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (MGI:2449253|PMID:12645927) MGI PMID:12645927 MGI:2449253 NCBI chr 2:116,913,354...116,985,303
Ensembl chr 2:116,812,582...117,034,887
JBrowse link
G ARC activity regulated cytoskeleton associated protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1355000|PMID:10727859) MGI
Ensembl
PMID:10727859 GO_REF:0000107 MGI:1355000 NCBI chr 4:1,517,986...1,521,403
Ensembl chr 4:1,518,180...1,519,370
JBrowse link
G BARX1 BARX homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3766872|PMID:17855428) MGI
Ensembl
PMID:17855428 GO_REF:0000107 MGI:3766872 NCBI chr 3:43,284,609...43,288,269
Ensembl chr 3:43,284,464...43,288,281
JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:61,526,121...61,533,686
Ensembl chr13:61,526,116...61,533,674
JBrowse link
G BHLHE41 basic helix-loop-helix family member e41 involved_in IEA
IBA
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 5:47,687,662...47,692,761
Ensembl chr 5:47,686,404...47,692,762
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3051920|PMID:15136140) MGI
Ensembl
PMID:15136140 GO_REF:0000107 MGI:3051920 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,790
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1855789|PMID:10772805)
(MGI:3525050|PMID:15542835)
MGI
Ensembl
PMID:10772805 PMID:15542835 GO_REF:0000107 MGI:1855789 MGI:3525050 NCBI chr15:105,971,577...106,132,496
Ensembl chr15:105,970,428...106,135,730
JBrowse link
G BPTF bromodomain PHD finger transcription factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3840601|PMID:18974875)
(MGI:3821803|PMID:18794365)
MGI
Ensembl
PMID:18794365 PMID:18974875 GO_REF:0000107 MGI:3821803 MGI:3840601 NCBI chr12:14,112,943...14,254,810
Ensembl chr12:14,112,718...14,254,790
JBrowse link
G BTG2 BTG anti-proliferation factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3525050|PMID:15542835) MGI
Ensembl
PMID:15542835 GO_REF:0000107 MGI:3525050 NCBI chr 9:64,033,853...64,037,795
Ensembl chr 9:64,031,832...64,035,837
JBrowse link
G CDON cell adhesion associated, oncogene regulated acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4422144|PMID:19754878) MGI
Ensembl
PMID:19754878 GO_REF:0000107 MGI:4422144 NCBI chr 9:53,079,543...53,178,881
Ensembl chr 9:53,079,550...53,178,881
JBrowse link
G CDX1 caudal type homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154839|PMID:11784046)
(MGI:2154839|PMID:11784046), (MGI:77274|PMID:7585967)
MGI
Ensembl
PMID:7585967 PMID:11784046 GO_REF:0000107 MGI:2154839 MGI:77274 NCBI chr 2:151,202,842...151,217,132
Ensembl chr 2:151,202,777...151,216,988
JBrowse link
G CDX2 caudal type homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4398801|PMID:19853565) MGI
Ensembl
PMID:19853565 GO_REF:0000107 MGI:4398801 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057
JBrowse link
G CDX4 caudal type homeobox 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4398801|PMID:19853565) MGI
Ensembl
PMID:19853565 GO_REF:0000107 MGI:4398801 NCBI chr  X:59,089,131...59,100,958
Ensembl chr  X:59,091,946...59,100,431
JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1197794|PMID:9501024) MGI
Ensembl
PMID:9501024 GO_REF:0000107 MGI:1197794 NCBI chr 1:207,817,095...207,821,800
Ensembl chr 1:207,818,175...207,822,291
JBrowse link
G CFC1B cryptic, EGF-CFC family member 1B acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:2136711|PMID:11412024) MGI
GO_Central
TreeGrafter
PMID:11412024 GO_REF:0000033 GO_REF:0000118 MGI:2136711 NCBI chr15:56,943,183...56,951,929 JBrowse link
G CRIPTO cripto, EGF-CFC family member involved_in IBA
IEA
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr13:29,537,874...29,544,686
Ensembl chr13:29,540,314...29,543,893
JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3614586|PMID:16399080) MGI
Ensembl
PMID:16399080 GO_REF:0000107 MGI:3614586 NCBI chr14:50,528,950...50,558,664
Ensembl chr14:50,528,955...50,558,662
JBrowse link
G CTNNBIP1 catenin beta interacting protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3044441|PMID:15148409) MGI
Ensembl
PMID:15148409 GO_REF:0000107 MGI:3044441 NCBI chr 6:70,184,935...70,241,560
Ensembl chr 6:70,184,936...70,241,477
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 acts_upstream_of_or_within ISO (MGI:3703483|PMID:17067568) MGI PMID:17067568 MGI:3703483 NCBI chr14:104,561,394...104,567,099
Ensembl chr14:104,563,195...104,567,095
JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3703483|PMID:17067568) MGI
Ensembl
PMID:17067568 GO_REF:0000107 MGI:3703483 NCBI chr14:104,550,901...104,558,977
Ensembl chr14:104,551,134...104,559,978
JBrowse link
G EMX2 empty spiracles homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3578670|PMID:15917450)
(MGI:2386059|PMID:12196586)
MGI
Ensembl
PMID:12196586 PMID:15917450 GO_REF:0000107 MGI:2386059 MGI:3578670 NCBI chr14:127,649,675...127,656,972
Ensembl chr14:127,650,688...127,655,706
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr17:29,997,397...30,001,704
Ensembl chr17:29,997,401...30,001,707
JBrowse link
G FOXH1 forkhead box H1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1934969|PMID:11358868) MGI
Ensembl
PMID:11358868 GO_REF:0000107 MGI:1934969 NCBI chr 4:320,610...324,570
Ensembl chr 4:322,838...324,481
JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4367921|PMID:19877275) MGI PMID:19877275 MGI:4367921 NCBI chr 6:54,823,680...54,830,425
Ensembl chr 6:54,823,668...54,829,506
JBrowse link
G GDF11 growth differentiation factor 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1339513|PMID:10391213)
(MGI:5509072|PMID:23918385)
MGI
Ensembl
PMID:10391213 PMID:23918385 GO_REF:0000107 MGI:1339513 MGI:5509072 NCBI chr 5:21,191,322...21,199,024
Ensembl chr 5:21,191,251...21,201,804
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5439039|PMID:22841643) MGI
Ensembl
PMID:22841643 GO_REF:0000107 MGI:5439039 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3053244|PMID:15315762)
(MGI:5439039|PMID:22841643)
MGI
Ensembl
PMID:15315762 PMID:22841643 GO_REF:0000107 MGI:3053244 MGI:5439039 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900
JBrowse link
G GRSF1 G-rich RNA sequence binding factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3578569|PMID:15857914) MGI
Ensembl
PMID:15857914 GO_REF:0000107 MGI:3578569 NCBI chr 8:67,586,935...67,607,422
Ensembl chr 8:67,586,738...67,607,689
JBrowse link
G HELT helt bHLH transcription factor involved_in IBA
IEA
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr15:46,087,988...46,089,986
Ensembl chr15:46,087,696...46,090,084
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in IBA
IEA
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr13:131,135,970...131,137,865
Ensembl chr13:131,135,725...131,138,237
JBrowse link
G HES2 hes family bHLH transcription factor 2 involved_in IBA
IEA
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 6:67,276,774...67,279,617
Ensembl chr 6:67,276,777...67,279,603
JBrowse link
G HES3 hes family bHLH transcription factor 3 involved_in IEA
IBA
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 6:67,134,259...67,138,639
Ensembl chr 6:67,133,482...67,135,292
JBrowse link
G HES4 hes family bHLH transcription factor 4 involved_in IEA
IBA
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 6:63,351,593...63,356,690
Ensembl chr 6:63,351,602...63,356,466
JBrowse link
G HES5 hes family bHLH transcription factor 5 involved_in IEA
IBA
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 6:64,409,110...64,410,541
Ensembl chr 6:64,408,956...64,410,881
JBrowse link
G HES6 hes family bHLH transcription factor 6 involved_in IBA
IEA
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr15:137,785,808...137,787,689
Ensembl chr15:137,785,810...137,787,694
JBrowse link
G HES7 hes family bHLH transcription factor 7 involved_in IBA
IEA
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr12:53,334,350...53,339,336
Ensembl chr12:53,333,907...53,337,575
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 involved_in IBA
IEA
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 4:56,859,640...56,863,807
Ensembl chr 4:56,859,663...56,863,788
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in IEA
IBA
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 1:37,219,887...37,231,321
Ensembl chr 1:37,219,883...37,231,385
JBrowse link
G HEYL hes related family bHLH transcription factor with YRPW motif like involved_in IBA
IEA
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 6:95,442,655...95,459,597
Ensembl chr 6:95,442,661...95,459,575
JBrowse link
G HHEX hematopoietically expressed homeobox involved_in ISO (MGI:3777521|PMID:16936074) UniProt PMID:16936074 MGI:3777521 NCBI chr14:104,194,424...104,199,684
Ensembl chr14:104,194,343...104,200,219
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3619785|PMID:16537918) MGI
Ensembl
PMID:16537918 GO_REF:0000107 MGI:3619785 NCBI chr 4:106,570,950...106,627,114
Ensembl chr 4:106,572,755...106,627,418
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3619785|PMID:16537918) MGI
Ensembl
PMID:16537918 GO_REF:0000107 MGI:3619785 NCBI chr18:9,940,535...10,141,815
Ensembl chr18:9,861,792...10,135,065
JBrowse link
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578600|PMID:15872003) Ensembl
MGI
PMID:15872003 GO_REF:0000107 MGI:3578600 NCBI chr12:39,143,119...39,201,631
Ensembl chr12:39,143,121...39,201,631
JBrowse link
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (MGI:3055618|PMID:15367676)
(MGI:1346308|PMID:10529420)
MGI PMID:10529420 PMID:15367676 MGI:1346308 MGI:3055618 NCBI chr18:45,477,561...45,480,306
Ensembl chr18:45,477,461...45,480,152
JBrowse link
G HOXA10 homeobox A10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2667742|PMID:12869760) MGI
Ensembl
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr18:45,393,525...45,403,259
Ensembl chr18:45,393,885...45,403,257
JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2667742|PMID:12869760) MGI
Ensembl
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953
JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1098901|PMID:9367425) MGI
Ensembl
PMID:9367425 GO_REF:0000107 MGI:1098901 NCBI chr18:45,470,079...45,473,345
Ensembl chr18:45,470,862...45,473,876
JBrowse link
G HOXA3 homeobox A3 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:1195045|PMID:9441667)
(MGI:67616|PMID:7913519)
MGI
GO_Central
TreeGrafter
Ensembl
PMID:7913519 PMID:9441667 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:1195045 MGI:67616 NCBI chr18:45,421,542...45,467,803
Ensembl chr18:45,454,213...45,466,537
JBrowse link
G HOXA4 homeobox A4 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:74948|PMID:7628700)
(MGI:67413|PMID:7918106)
MGI
GO_Central
TreeGrafter
PMID:7628700 PMID:7918106 GO_REF:0000033 GO_REF:0000118 MGI:67413 MGI:74948 NCBI chr18:45,443,268...45,445,662 JBrowse link
G HOXA5 homeobox A5 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:3723390|PMID:17417799)
(MGI:3720535|PMID:17626057)
(MGI:1203259|PMID:9603431), (MGI:63693|PMID:7901120)
MGI
GO_Central
TreeGrafter
Ensembl
PMID:7901120 PMID:9603431 PMID:17417799 PMID:17626057 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:1203259 MGI:3720535 MGI:3723390 MGI:63693 NCBI chr18:45,429,691...45,432,723
Ensembl chr18:45,421,663...45,432,885
JBrowse link
G HOXA6 homeobox A6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3720535|PMID:17626057)
(MGI:67413|PMID:7918106)
MGI
TreeGrafter
PMID:7918106 PMID:17626057 GO_REF:0000118 MGI:3720535 MGI:67413 NCBI chr18:45,423,530...45,429,947 JBrowse link
G HOXA7 homeobox A7 acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
(MGI:1313067|PMID:9784603) MGI
TreeGrafter
GO_Central
Ensembl
PMID:9784603 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:1313067 NCBI chr18:45,417,137...45,419,113
Ensembl chr18:45,417,203...45,419,101
JBrowse link
G HOXA9 homeobox A9 acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
(MGI:85243|PMID:9013929)
(MGI:3720535|PMID:17626057)
(MGI:78984|PMID:8625797)
MGI
TreeGrafter
GO_Central
Ensembl
PMID:8625797 PMID:9013929 PMID:17626057 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:3720535 MGI:78984 MGI:85243 NCBI chr18:45,404,594...45,411,512
Ensembl chr18:45,408,375...45,411,509
JBrowse link
G HOXB1 homeobox B1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1859107|PMID:10885747)
(MGI:1346308|PMID:10529420)
MGI
Ensembl
PMID:10529420 PMID:10885747 GO_REF:0000107 MGI:1346308 MGI:1859107 NCBI chr12:24,784,953...24,786,377
Ensembl chr12:24,784,594...24,786,576
JBrowse link
G HOXB2 homeobox B2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:85074|PMID:9012503)
(MGI:1859107|PMID:10885747)
MGI
Ensembl
PMID:9012503 PMID:10885747 GO_REF:0000107 MGI:1859107 MGI:85074 NCBI chr12:24,796,786...24,800,499
Ensembl chr12:24,797,225...24,799,303
JBrowse link
G HOXB3 homeobox B3 acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
(MGI:1195045|PMID:9441667)
(MGI:1859107|PMID:10885747)
MGI
TreeGrafter
GO_Central
Ensembl
PMID:9441667 PMID:10885747 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:1195045 MGI:1859107 NCBI chr12:24,803,119...24,827,557
Ensembl chr12:24,804,647...24,809,937
JBrowse link
G HOXB4 homeobox B4 involved_in IEA
IBA
Ensembl
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 Ensembl chr12:24,829,452...24,832,318 JBrowse link
G HOXB5 homeobox B5 acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
(MGI:70296|PMID:7828847)
(MGI:1859107|PMID:10885747)
(MGI:3720535|PMID:17626057)
MGI
TreeGrafter
GO_Central
Ensembl
PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:1859107 MGI:3720535 MGI:70296 NCBI chr12:24,845,224...24,849,639
Ensembl chr12:24,845,225...24,847,918
JBrowse link
G HOXB6 homeobox B6 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:70296|PMID:7828847)
(MGI:1859107|PMID:10885747)
(MGI:3720535|PMID:17626057)
MGI
GO_Central
TreeGrafter
Ensembl
PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:1859107 MGI:3720535 MGI:70296 NCBI chr12:24,849,741...24,853,494
Ensembl chr12:24,849,742...24,852,286
JBrowse link
G HOXB7 homeobox B7 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:1313067|PMID:9784603)
(MGI:1859107|PMID:10885747)
MGI
GO_Central
Ensembl
PMID:9784603 PMID:10885747 GO_REF:0000033 GO_REF:0000107 MGI:1313067 MGI:1859107 NCBI chr12:24,861,165...24,864,675
Ensembl chr12:24,861,174...24,864,620
JBrowse link
G HOXB8 homeobox B8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2681074|PMID:14623233)
(MGI:1859107|PMID:10885747)
(MGI:1933164|PMID:11311170)
(MGI:1349283|PMID:10559485), (MGI:1933164|PMID:11311170)
MGI
TreeGrafter
Ensembl
PMID:10559485 PMID:10885747 PMID:11311170 PMID:14623233 GO_REF:0000107 GO_REF:0000118 MGI:1349283 MGI:1859107 MGI:1933164 MGI:2681074 NCBI chr12:24,865,985...24,879,706
Ensembl chr12:24,865,984...24,868,930
JBrowse link
G HOXB9 homeobox B9 involved_in IEA
IBA
Ensembl
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 Ensembl chr12:24,875,723...24,880,333 JBrowse link
G HOXC10 homeobox C10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2667742|PMID:12869760) MGI
Ensembl
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr 5:19,197,810...19,202,975
Ensembl chr 5:19,197,807...19,202,970
JBrowse link
G HOXC11 homeobox C11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2667742|PMID:12869760) MGI
Ensembl
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr 5:19,181,580...19,189,031
Ensembl chr 5:19,178,619...19,189,013
JBrowse link
G HOXC13 homeobox C13 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1195385|PMID:9420327) MGI
Ensembl
PMID:9420327 GO_REF:0000107 MGI:1195385 NCBI chr 5:19,151,096...19,159,008
Ensembl chr 5:19,151,084...19,158,646
JBrowse link
G HOXC4 homeobox C4 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:79121|PMID:8626021)
(MGI:81673|PMID:8660891)
MGI
GO_Central
TreeGrafter
Ensembl
PMID:8626021 PMID:8660891 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:79121 MGI:81673 NCBI chr 5:19,250,411...19,268,267
Ensembl chr 5:19,265,081...19,268,257
JBrowse link
G HOXC5 homeobox C5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3720535|PMID:17626057) MGI
TreeGrafter
Ensembl
PMID:17626057 GO_REF:0000107 GO_REF:0000118 MGI:3720535 NCBI chr 5:19,245,857...19,248,183
Ensembl chr 5:19,245,851...19,248,172
JBrowse link
G HOXC6 homeobox C6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3720535|PMID:17626057) MGI
TreeGrafter
Ensembl
PMID:17626057 GO_REF:0000107 GO_REF:0000118 MGI:3720535 NCBI chr 5:19,230,227...19,243,522
Ensembl chr 5:19,229,594...19,243,652
JBrowse link
G HOXC8 homeobox C8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1933164|PMID:11311170) MGI
Ensembl
PMID:11311170 GO_REF:0000107 MGI:1933164 NCBI chr 5:19,222,124...19,225,734
Ensembl chr 5:19,222,057...19,225,835
JBrowse link
G HOXC9 homeobox C9 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:3720535|PMID:17626057)
(MGI:73980|PMID:7547473)
MGI
GO_Central
TreeGrafter
Ensembl
PMID:7547473 PMID:17626057 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:3720535 MGI:73980 NCBI chr 5:19,212,490...19,215,859
Ensembl chr 5:19,212,905...19,215,984
JBrowse link
G HOXD10 homeobox D10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1350864|PMID:10642795)
(MGI:2667742|PMID:12869760)
MGI
Ensembl
PMID:10642795 PMID:12869760 GO_REF:0000107 MGI:1350864 MGI:2667742 NCBI chr15:81,911,372...81,921,164
Ensembl chr15:81,917,637...81,921,461
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282
JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (MGI:63627|PMID:8106170) MGI PMID:8106170 MGI:63627 NCBI chr15:81,893,997...81,897,965
Ensembl chr15:81,893,972...81,896,944
JBrowse link
G HOXD3 homeobox D3 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:63793|PMID:7910549), (MGI:67616|PMID:7913519)
(MGI:1195045|PMID:9441667)
(MGI:67616|PMID:7913519)
MGI
GO_Central
TreeGrafter
Ensembl
PMID:7910549 PMID:7913519 PMID:9441667 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:1195045 MGI:63793 MGI:67616 NCBI chr15:81,969,482...81,974,893
Ensembl chr15:81,958,701...81,973,673
JBrowse link
G HOXD4 homeobox D4 involved_in IEA
IBA
Ensembl
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 Ensembl chr15:81,952,660...81,955,172 JBrowse link
G HOXD8 homeobox D8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1933164|PMID:11311170) MGI
Ensembl
PMID:11311170 GO_REF:0000107 MGI:1933164 NCBI chr15:81,930,923...81,935,528
Ensembl chr15:81,931,010...81,935,529
JBrowse link
G HOXD9 homeobox D9 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:3720535|PMID:17626057)
(MGI:78984|PMID:8625797)
(MGI:1350864|PMID:10642795)
MGI
GO_Central
TreeGrafter
Ensembl
PMID:8625797 PMID:10642795 PMID:17626057 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:1350864 MGI:3720535 MGI:78984 NCBI chr15:81,910,415...81,926,276
Ensembl chr15:81,924,142...81,926,274
JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (MGI:3609520|PMID:16109169) MGI PMID:16109169 MGI:3609520 NCBI chr 8:1,809,768...1,934,002
Ensembl chr 8:1,809,785...1,934,024
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:2660994|PMID:12701101)
(MGI:3579954|PMID:15930098)
MGI PMID:12701101 PMID:15930098 MGI:2660994 MGI:3579954 NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,025,613
JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (MGI:1336552|PMID:10220415) MGI PMID:10220415 MGI:1336552 NCBI chr 2:134,932,339...135,069,408
Ensembl chr 2:134,932,615...135,069,377
JBrowse link
G KMT2A lysine methyltransferase 2A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3625774|PMID:16618927)
(MGI:3530206|PMID:15741318)
MGI
Ensembl
PMID:15741318 PMID:16618927 GO_REF:0000107 MGI:3530206 MGI:3625774 NCBI chr 9:45,743,566...45,828,559
Ensembl chr 9:45,743,397...45,824,884
JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1344734|PMID:10498685) MGI
Ensembl
PMID:10498685 GO_REF:0000107 MGI:1344734 NCBI chr12:38,450,708...38,457,583
Ensembl chr12:38,450,708...38,456,139
JBrowse link
G LOC102159820 cadherin EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3835694|PMID:18849982)
(MGI:4429791|PMID:19357712)
MGI
Ensembl
PMID:18849982 PMID:19357712 GO_REF:0000107 MGI:3835694 MGI:4429791 NCBI chr 5:3,114,410...3,203,378
Ensembl chr 5:2,980,351...3,203,381
JBrowse link
G LOC102161418 interferon-induced transmembrane protein 1-like acts_upstream_of_or_within ISO (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 NCBI chr 2:156,364...157,650 JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:3045836|PMID:15142971) MGI
GO_Central
TreeGrafter
Ensembl
PMID:15142971 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:3045836 NCBI chr 2:4,533,721...4,653,997
Ensembl chr 2:4,533,614...4,653,944
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3603992|PMID:16126904)
(MGI:3045836|PMID:15142971)
(MGI:4413372|PMID:19795512)
MGI PMID:15142971 PMID:16126904 PMID:19795512 MGI:3045836 MGI:3603992 MGI:4413372 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2387913|PMID:12242306) MGI
Ensembl
PMID:12242306 GO_REF:0000107 MGI:2387913 NCBI chr 1:202,317,458...202,604,308
Ensembl chr 1:202,318,929...202,607,058
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4948979|PMID:21465616) MGI
Ensembl
PMID:21465616 GO_REF:0000107 MGI:4948979 NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789
JBrowse link
G NEUROD1 neuronal differentiation 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3613103|PMID:16368089) MGI
Ensembl
PMID:16368089 GO_REF:0000107 MGI:3613103 NCBI chr15:87,175,629...87,179,953
Ensembl chr15:87,175,765...87,179,959
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624254|PMID:16496285)
(MGI:3056019|PMID:15302604)
(MGI:2136068|PMID:11418863), (MGI:3042338|PMID:15004567)
(MGI:2155575|PMID:11311163)
MGI
Ensembl
PMID:11311163 PMID:11418863 PMID:15004567 PMID:15302604 PMID:16496285 GO_REF:0000107 MGI:2136068 MGI:2155575 MGI:3042338 MGI:3056019 MGI:3624254 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,353,258...73,360,654
JBrowse link
G NR2F2 nuclear receptor subfamily 2 group F member 2 acts_upstream_of_or_within ISO (MGI:3578605|PMID:15829524) MGI PMID:15829524 MGI:3578605 NCBI chr 7:83,076,119...83,090,250
Ensembl chr 7:83,076,124...83,090,535
JBrowse link
G OTX1 orthodenticle homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3039992|PMID:15105370) MGI
Ensembl
PMID:15105370 GO_REF:0000107 MGI:3039992 NCBI chr 3:78,895,142...78,903,045
Ensembl chr 3:78,896,675...78,903,122
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2656991|PMID:12652306)
(MGI:2136711|PMID:11412024)
(MGI:1197794|PMID:9501024)
MGI PMID:9501024 PMID:11412024 PMID:12652306 MGI:1197794 MGI:2136711 MGI:2656991 NCBI chr 1:186,028,575...186,039,026
Ensembl chr 1:186,028,579...186,038,229
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2386059|PMID:12196586)
(MGI:3578670|PMID:15917450)
MGI
Ensembl
PMID:12196586 PMID:15917450 GO_REF:0000107 MGI:2386059 MGI:3578670 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,978,287...29,001,200
JBrowse link
G PBX1 PBX homeobox 1 acts_upstream_of_or_within ISO (MGI:2151355|PMID:11566859) MGI PMID:11566859 MGI:2151355 NCBI chr 4:85,824,590...86,170,328
Ensembl chr 4:85,824,666...86,170,191
JBrowse link
G PCGF2 polycomb group ring finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530206|PMID:15741318)
(MGI:80640|PMID:8625838)
MGI
Ensembl
PMID:8625838 PMID:15741318 GO_REF:0000107 MGI:3530206 MGI:80640 NCBI chr12:23,362,631...23,375,779
Ensembl chr12:23,362,654...23,375,775
JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:228,854,587...229,308,054
Ensembl chr 1:228,854,595...229,308,906
JBrowse link
G PDS5A PDS5 cohesin associated factor A acts_upstream_of_or_within ISO (MGI:3847057|PMID:19412548) MGI PMID:19412548 MGI:3847057 NCBI chr 8:30,988,366...31,134,331
Ensembl chr 8:30,988,370...31,134,331
JBrowse link
G RARG retinoic acid receptor gamma acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154839|PMID:11784046), (MGI:60925|PMID:8388780) MGI
Ensembl
PMID:8388780 PMID:11784046 GO_REF:0000107 MGI:2154839 MGI:60925 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,270...18,458,624
JBrowse link
G RING1 ring finger protein 1 acts_upstream_of_or_within ISO (MGI:1926247|PMID:11060235), (MGI:3628673|PMID:16624538)
(MGI:3628673|PMID:16624538)
MGI PMID:11060235 PMID:16624538 MGI:1926247 MGI:3628673 NCBI chr 7:25,251,507...25,255,526
Ensembl chr 7:25,251,486...25,255,522
JBrowse link
G SCMH1 Scm polycomb group protein homolog 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3703453|PMID:17215307) MGI
Ensembl
PMID:17215307 GO_REF:0000107 MGI:3703453 NCBI chr 6:169,999,763...170,189,357
Ensembl chr 6:169,999,792...170,189,353
JBrowse link
G SF3B1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (MGI:3530206|PMID:15741318) MGI PMID:15741318 MGI:3530206 NCBI chr15:101,274,968...101,338,018
Ensembl chr15:101,276,851...101,299,105
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618960|PMID:16467359) MGI
Ensembl
PMID:16467359 GO_REF:0000107 MGI:3618960 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618960|PMID:16467359) MGI
Ensembl
PMID:16467359 GO_REF:0000107 MGI:3618960 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,144...75,345,921
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1928592|PMID:11118883)
(MGI:2135419|PMID:11389830)
MGI
Ensembl
PMID:11118883 PMID:11389830 GO_REF:0000107 MGI:1928592 MGI:2135419 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2667288|PMID:12842913)
(MGI:1201281|PMID:9529255), (MGI:2136068|PMID:11418863)
MGI
Ensembl
PMID:9529255 PMID:11418863 PMID:12842913 GO_REF:0000107 MGI:1201281 MGI:2136068 MGI:2667288 NCBI chr 1:97,415,360...97,511,388
Ensembl chr 1:97,415,716...97,511,357
JBrowse link
G SMAD4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3051711|PMID:15215210) Ensembl
MGI
PMID:15215210 GO_REF:0000107 MGI:3051711 NCBI chr 1:100,521,843...100,633,501
Ensembl chr 1:100,589,850...100,628,029
JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5438143|PMID:22987639) Ensembl
MGI
PMID:22987639 GO_REF:0000107 MGI:5438143 NCBI chr18:19,450,730...19,478,796
Ensembl chr18:19,450,743...19,478,898
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:3614586|PMID:16399080)
(MGI:3039048|PMID:15084464)
MGI PMID:15084464 PMID:16399080 MGI:3039048 MGI:3614586 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,321...51,296,725
JBrowse link
G TBXT T-box transcription factor T acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3056222|PMID:15384171) MGI
Ensembl
PMID:15384171 GO_REF:0000107 MGI:3056222 NCBI chr 1:2,717,165...2,725,561
Ensembl chr 1:2,717,165...2,725,601
JBrowse link
G TCF15 transcription factor 15 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:84545|PMID:8955271) MGI
Ensembl
PMID:8955271 GO_REF:0000107 MGI:84545 NCBI chr17:34,626,682...34,632,881
Ensembl chr17:34,626,670...34,633,263
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3695190|PMID:16845371) MGI
Ensembl
PMID:16845371 GO_REF:0000107 MGI:3695190 NCBI chr 1:240,842,735...240,918,267
Ensembl chr 1:240,860,156...240,918,528
JBrowse link
G TSHZ1 teashirt zinc finger homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3720547|PMID:17586487) MGI
Ensembl
PMID:17586487 GO_REF:0000107 MGI:3720547 NCBI chr 1:148,905,179...148,984,984
Ensembl chr 1:148,906,075...148,984,832
JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3844764|PMID:19334287) MGI
Ensembl
PMID:19334287 GO_REF:0000107 MGI:3844764 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,448...67,238,322
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3835694|PMID:18849982) MGI PMID:18849982 MGI:3835694 NCBI chr 4:90,051,994...90,080,701
Ensembl chr 4:90,051,277...90,080,635
JBrowse link
G VWDE von Willebrand factor D and EGF domains involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:81,916,966...81,987,106
Ensembl chr 9:81,916,966...81,986,831
JBrowse link
G WIF1 WNT inhibitory factor 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:29,450,442...29,543,913
Ensembl chr 5:29,450,442...29,543,913
JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:17,627,291...17,681,197
Ensembl chr12:17,628,726...17,681,026
JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3044441|PMID:15148409) MGI
Ensembl
PMID:15148409 GO_REF:0000107 MGI:3044441 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,153,970...51,202,176
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3039991|PMID:15073149), (MGI:4413372|PMID:19795512) MGI
Ensembl
PMID:15073149 PMID:19795512 GO_REF:0000107 MGI:3039991 MGI:4413372 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
G YY1 YY1 transcription factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3628673|PMID:16624538) MGI
Ensembl
PMID:16624538 GO_REF:0000107 MGI:3628673 NCBI chr 7:121,132,168...121,170,699
Ensembl chr 7:121,132,191...121,170,697
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1859075|PMID:10835630) MGI
Ensembl
PMID:10835630 GO_REF:0000107 MGI:1859075 NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
JBrowse link
G ZIC3 Zic family member 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624254|PMID:16496285) MGI
Ensembl
PMID:16496285 GO_REF:0000107 MGI:3624254 NCBI chr  X:112,592,951...112,605,087
Ensembl chr  X:112,593,301...112,604,814
JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AURKA aurora kinase A acts_upstream_of_or_within ISO (MGI:5449118|PMID:22939930) MGI PMID:22939930 MGI:5449118 NCBI chr17:56,954,838...56,972,435 JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1889107|PMID:10964473) MGI
Ensembl
PMID:10964473 GO_REF:0000107 MGI:1889107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637
JBrowse link
G CDX1 caudal type homeobox 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:151,202,842...151,217,132
Ensembl chr 2:151,202,777...151,216,988
JBrowse link
G CDX2 caudal type homeobox 2 involved_in IBA
IEA
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057
JBrowse link
G CDX4 caudal type homeobox 4 involved_in IEA
IBA
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr  X:59,089,131...59,100,958
Ensembl chr  X:59,091,946...59,100,431
JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3776330|PMID:18241853)
(MGI:3042338|PMID:15004567)
MGI
Ensembl
PMID:15004567 PMID:18241853 GO_REF:0000107 MGI:3042338 MGI:3776330 NCBI chr 1:207,817,095...207,821,800
Ensembl chr 1:207,818,175...207,822,291
JBrowse link
G CRIPTO cripto, EGF-CFC family member acts_upstream_of_or_within ISO (MGI:3776330|PMID:18241853) MGI PMID:18241853 MGI:3776330 NCBI chr13:29,537,874...29,544,686
Ensembl chr13:29,540,314...29,543,893
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1353237|PMID:10662781) MGI
Ensembl
PMID:10662781 GO_REF:0000107 MGI:1353237 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311
JBrowse link
G DDIT3 DNA damage inducible transcript 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:22,785,441...22,789,867
Ensembl chr 5:22,785,445...22,789,829
JBrowse link
G GPC3 glypican 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1889107|PMID:10964473) MGI
Ensembl
PMID:10964473 GO_REF:0000107 MGI:1889107 NCBI chr  X:109,536,495...109,973,605
Ensembl chr  X:109,536,504...109,973,607
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (MGI:3530185|PMID:15680351) MGI PMID:15680351 MGI:3530185 NCBI chr 4:56,859,640...56,863,807
Ensembl chr 4:56,859,663...56,863,788
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530185|PMID:15680351) MGI
Ensembl
PMID:15680351 GO_REF:0000107 MGI:3530185 NCBI chr 1:37,219,887...37,231,321
Ensembl chr 1:37,219,883...37,231,385
JBrowse link
G LDB1 LIM domain binding 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2448170|PMID:12490556) MGI
Ensembl
PMID:12490556 GO_REF:0000107 MGI:2448170 NCBI chr14:113,114,302...113,126,455
Ensembl chr14:113,113,179...113,126,816
JBrowse link
G LEFTY2 left-right determination factor 2 involved_in IEA
IBA
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr10:13,849,052...13,853,438
Ensembl chr10:13,848,174...13,853,438
JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1346311|PMID:10529425) MGI
Ensembl
PMID:10529425 GO_REF:0000107 MGI:1346311 NCBI chr12:38,450,708...38,457,583
Ensembl chr12:38,450,708...38,456,139
JBrowse link
G LOC100524517 left-right determination factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
(MGI:3042338|PMID:15004567) MGI
TreeGrafter
GO_Central
PMID:15004567 GO_REF:0000033 GO_REF:0000118 MGI:3042338 NCBI chr10:13,815,157...13,819,249 JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2155575|PMID:11311163) MGI
Ensembl
PMID:11311163 GO_REF:0000107 MGI:2155575 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,353,258...73,360,654
JBrowse link
G PGAP1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1346311|PMID:10529425) MGI
Ensembl
PMID:10529425 GO_REF:0000107 MGI:1346311 NCBI chr15:100,733,552...100,820,603
Ensembl chr15:100,733,560...100,820,585
JBrowse link
G RNF2 ring finger protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2389282|PMID:12183370) MGI
Ensembl
PMID:12183370 GO_REF:0000107 MGI:2389282 NCBI chr 9:126,172,637...126,284,567
Ensembl chr 9:126,172,301...126,287,603
JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:95,460,046...95,463,428
Ensembl chr 3:95,459,945...95,463,251
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:2176418|PMID:11731796) MGI PMID:11731796 MGI:2176418 NCBI chr 6:64,188,265...64,242,596
Ensembl chr 6:64,188,236...64,242,560
JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (MGI:3044041|PMID:15155583) MGI PMID:15155583 MGI:3044041 NCBI chr 1:53,836,939...53,867,460
Ensembl chr 1:53,838,189...53,867,254
JBrowse link
G WLS Wnt ligand secretion mediator involved_in ISO (MGI:4397730|PMID:19841259) UniProt PMID:19841259 MGI:4397730 NCBI chr 6:144,242,639...144,529,659
Ensembl chr 6:144,399,926...144,555,880
JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:17,627,291...17,681,197
Ensembl chr12:17,628,726...17,681,026
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRIPTO cripto, EGF-CFC family member acts_upstream_of_or_within ISO (MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:1303194 NCBI chr13:29,537,874...29,544,686
Ensembl chr13:29,540,314...29,543,893
JBrowse link
G FRS2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3580203|PMID:15870281) MGI
Ensembl
PMID:15870281 GO_REF:0000107 MGI:3580203 NCBI chr 5:33,725,432...33,852,952
Ensembl chr 5:33,725,444...33,849,953
JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:110,913,990...110,921,388
Ensembl chr15:110,914,009...110,921,353
JBrowse link
G TASOR transcription activation suppressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:38,491,048...38,557,256
Ensembl chr13:38,492,472...38,557,193
JBrowse link
G TBX3 T-box transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766
JBrowse link
G TCF7L1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:3043490 NCBI chr 3:59,438,152...59,458,988 JBrowse link
G WNT5A Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
JBrowse link
G MED12 mediator complex subunit 12 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4839483|PMID:20630950) MGI
Ensembl
PMID:20630950 GO_REF:0000107 MGI:4839483 NCBI chr  X:57,150,884...57,174,367
Ensembl chr  X:57,150,919...57,175,333
JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1891551|PMID:11029008) MGI
Ensembl
PMID:11029008 GO_REF:0000107 MGI:1891551 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,153,970...51,202,176
JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL1 delta like canonical Notch ligand 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2181244|PMID:12001066) MGI
Ensembl
PMID:12001066 GO_REF:0000107 MGI:2181244 NCBI chr 1:198,815...211,346
Ensembl chr 1:199,358...211,346
JBrowse link
G DLL3 delta like canonical Notch ligand 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2181244|PMID:12001066) MGI
Ensembl
PMID:12001066 GO_REF:0000107 MGI:2181244 NCBI chr 6:48,135,738...48,155,373
Ensembl chr 6:48,147,635...48,155,292
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2181244|PMID:12001066) MGI
Ensembl
PMID:12001066 GO_REF:0000107 MGI:2181244 NCBI chr 3:1,721,044...1,819,426
Ensembl chr 3:1,810,892...1,820,048
JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2181244|PMID:12001066) MGI
Ensembl
PMID:12001066 GO_REF:0000107 MGI:2181244
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3793375|PMID:18257070) MGI
Ensembl
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP2 bone morphogenetic protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611958|PMID:16314491) MGI
Ensembl
PMID:16314491 GO_REF:0000107 MGI:3611958 NCBI chr17:15,750,487...15,762,982
Ensembl chr17:15,749,835...15,761,195
JBrowse link
G FOXH1 forkhead box H1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3055632|PMID:15363409) MGI
Ensembl
PMID:15363409 GO_REF:0000107 MGI:3055632 NCBI chr 4:320,610...324,570
Ensembl chr 4:322,838...324,481
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:87488|PMID:9136932) MGI PMID:9136932 MGI:87488 NCBI chr14:14,858,470...14,938,156
Ensembl chr14:14,884,662...14,939,941
JBrowse link
epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2677178|PMID:14511481) MGI
Ensembl
PMID:14511481 GO_REF:0000107 MGI:2677178 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,353,258...73,360,654
JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FEZF1 FEZ family zinc finger 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3702790|PMID:16971467) MGI
Ensembl
PMID:16971467 GO_REF:0000107 MGI:3702790 NCBI chr18:24,881,850...24,884,790
Ensembl chr18:24,879,031...24,884,917
JBrowse link
G FEZF2 FEZ family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3702790|PMID:16971467) MGI
Ensembl
PMID:16971467 GO_REF:0000107 MGI:3702790 NCBI chr13:43,953,914...43,958,419
Ensembl chr13:43,953,910...43,957,473
JBrowse link
G SIX3 SIX homeobox 3 acts_upstream_of_or_within ISO (MGI:3772426|PMID:18094027) MGI PMID:18094027 MGI:3772426 NCBI chr 3:95,521,330...95,527,004
Ensembl chr 3:95,521,334...95,525,436
JBrowse link
G WNT1 Wnt family member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3772426|PMID:18094027) MGI
Ensembl
PMID:18094027 GO_REF:0000107 MGI:3772426 NCBI chr 5:15,010,607...15,015,007
Ensembl chr 5:15,010,786...15,014,998
JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:892757|PMID:9169845) Ensembl
MGI
PMID:9169845 GO_REF:0000107 MGI:892757 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,978,287...29,001,200
JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4361775|PMID:19805295)
(MGI:4360856|PMID:19686689)
MGI
Ensembl
PMID:19686689 PMID:19805295 GO_REF:0000107 MGI:4360856 MGI:4361775 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311
JBrowse link
G WNT2 Wnt family member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4360856|PMID:19686689) MGI
Ensembl
PMID:19686689 GO_REF:0000107 MGI:4360856 NCBI chr18:28,945,825...28,993,969
Ensembl chr18:28,946,326...28,993,961
JBrowse link
G WNT2B Wnt family member 2B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4360856|PMID:19686689) MGI
Ensembl
PMID:19686689 GO_REF:0000107 MGI:4360856 NCBI chr 4:107,906,141...107,923,343
Ensembl chr 4:107,903,502...107,921,118
JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EN1 engrailed homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3525936|PMID:15607945) MGI
Ensembl
PMID:15607945 GO_REF:0000107 MGI:3525936 NCBI chr15:24,402,605...24,408,377
Ensembl chr15:24,402,370...24,407,692
JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3720541|PMID:17601531) MGI
Ensembl
PMID:17601531 GO_REF:0000107 MGI:3720541 NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,162...112,814,248
JBrowse link
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624192|PMID:16651541) MGI
Ensembl
PMID:16651541 GO_REF:0000107 MGI:3624192 NCBI chr15:136,029,393...136,032,568
Ensembl chr15:136,029,070...136,032,316
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008), (MGI:4413372|PMID:19795512) MGI PMID:11029008 PMID:19795512 MGI:1891551 MGI:4413372 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
JBrowse link
G WNT1 Wnt family member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:59176|PMID:2205396) MGI
Ensembl
PMID:2205396 GO_REF:0000107 MGI:59176 NCBI chr 5:15,010,607...15,015,007
Ensembl chr 5:15,010,786...15,014,998
JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SSBP3 single stranded DNA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:157,911,583...158,081,478
Ensembl chr 6:157,911,493...158,081,476
JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT1 Wnt family member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:76584|PMID:8555108) MGI
Ensembl
PMID:8555108 GO_REF:0000107 MGI:76584 NCBI chr 5:15,010,607...15,015,007
Ensembl chr 5:15,010,786...15,014,998
JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624192|PMID:16651541) MGI
Ensembl
PMID:16651541 GO_REF:0000107 MGI:3624192 NCBI chr15:136,029,393...136,032,568
Ensembl chr15:136,029,070...136,032,316
JBrowse link
G HES1 hes family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2149154|PMID:11500373) MGI
Ensembl
PMID:11500373 GO_REF:0000107 MGI:2149154 NCBI chr13:131,135,970...131,137,865
Ensembl chr13:131,135,725...131,138,237
JBrowse link
G HES3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (MGI:2149134|PMID:11522634) MGI PMID:11522634 MGI:2149134 NCBI chr 6:67,134,259...67,138,639
Ensembl chr 6:67,133,482...67,135,292
JBrowse link
G KDM2B lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chr14:31,057,121...31,203,093
Ensembl chr14:31,165,950...31,203,091
JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FUZ fuzzy planar cell polarity protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr 6:54,823,680...54,830,425
Ensembl chr 6:54,823,668...54,829,506
JBrowse link
G OFD1 OFD1 centriole and centriolar satellite protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr  X:10,361,403...10,415,502 JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:1,721,044...1,819,426
Ensembl chr 3:1,810,892...1,820,048
JBrowse link
neural plate anterior/posterior regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELSR2 cadherin EGF LAG seven-pass G-type receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:110,819,422...110,845,354
Ensembl chr 4:110,819,428...110,845,132
JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206
JBrowse link
G TBX18 T-box transcription factor 18 involved_in ISO (MGI:3722519|PMID:17584735) BHF-UCL PMID:17584735 MGI:3722519 NCBI chr 1:53,836,939...53,867,460
Ensembl chr 1:53,838,189...53,867,254
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLD6 phospholipase D family member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:61,057,896...61,060,681
Ensembl chr12:61,057,733...61,060,696
JBrowse link
G TDRD1 tudor domain containing 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:124,526,013...124,575,166
Ensembl chr14:124,529,586...124,573,244
JBrowse link
G TDRD5 tudor domain containing 5 involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 9:121,245,080...121,337,339
Ensembl chr 9:121,211,960...121,333,220
JBrowse link
G TDRD6 tudor domain containing 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:41,468,589...41,485,146
Ensembl chr 7:41,468,780...41,483,469
JBrowse link
G TDRKH tudor and KH domain containing involved_in IEA
IBA
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 4:97,415,891...97,438,262
Ensembl chr 4:97,415,914...97,438,691
JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
JBrowse link
G WNT8A Wnt family member 8A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3609071|PMID:16256739) MGI
Ensembl
PMID:16256739 GO_REF:0000107 MGI:3609071 NCBI chr 2:140,103,322...140,113,682
Ensembl chr 2:140,103,830...140,109,862
JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ETS2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5546318|PMID:23552073) MGI
Ensembl
PMID:23552073 GO_REF:0000107 MGI:5546318 NCBI chr13:202,464,341...202,483,534
Ensembl chr13:202,468,405...202,484,608
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr17:29,997,397...30,001,704
Ensembl chr17:29,997,401...30,001,707
JBrowse link
G GDF3 growth differentiation factor 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611720|PMID:16368929) MGI
Ensembl
PMID:16368929 GO_REF:0000107 MGI:3611720 NCBI chr 5:62,835,926...62,841,827
Ensembl chr 5:62,835,880...62,841,884
JBrowse link
G HHEX hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:4950786|PMID:21445260) MGI PMID:21445260 MGI:4950786 NCBI chr14:104,194,424...104,199,684
Ensembl chr14:104,194,343...104,200,219
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2157654|PMID:11291865) Ensembl
MGI
PMID:11291865 GO_REF:0000107 MGI:2157654 NCBI chr12:38,450,708...38,457,583
Ensembl chr12:38,450,708...38,456,139
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4950786|PMID:21445260) MGI
Ensembl
PMID:21445260 GO_REF:0000107 MGI:4950786 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,353,258...73,360,654
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr 1:186,028,575...186,039,026
Ensembl chr 1:186,028,579...186,038,229
JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:73,707,026...73,826,529
Ensembl chr 5:73,707,050...73,826,430
JBrowse link
G SRF serum response factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1312998|PMID:9799237) MGI
Ensembl
PMID:9799237 GO_REF:0000107 MGI:1312998 NCBI chr 7:38,213,300...38,223,686
Ensembl chr 7:38,213,487...38,222,144
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4413372|PMID:19795512) MGI
Ensembl
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:112,592,951...112,605,087
Ensembl chr  X:112,593,301...112,604,814
JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr13:76,945,318...77,148,521
Ensembl chr13:76,945,395...77,147,072
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDX1 caudal type homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:151,202,842...151,217,132
Ensembl chr 2:151,202,777...151,216,988
JBrowse link
G CDX2 caudal type homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057
JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:198,815...211,346
Ensembl chr 1:199,358...211,346
JBrowse link
G DMRT2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3820487|PMID:17974128) MGI
Ensembl
PMID:17974128 GO_REF:0000107 MGI:3820487 NCBI chr 1:220,745,493...220,799,779
Ensembl chr 1:220,745,502...220,757,324
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4367298|PMID:19779553) MGI
Ensembl
PMID:19779553 GO_REF:0000107 MGI:4367298 NCBI chr 3:1,721,044...1,819,426
Ensembl chr 3:1,810,892...1,820,048
JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:72973|PMID:7789282) MGI
Ensembl
PMID:7789282 GO_REF:0000107 MGI:72973
G PAX3 paired box 3 acts_upstream_of_or_within ISO (MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chr15:124,093,803...124,193,041
Ensembl chr15:124,094,295...124,193,011
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3578715|PMID:15889094) MGI
Ensembl
PMID:15889094 GO_REF:0000107 MGI:3578715 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046
JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:36,271,154...36,300,240
Ensembl chr  X:36,271,222...36,304,181
JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:82985|PMID:8887324) MGI
Ensembl
PMID:8887324 GO_REF:0000107 MGI:82985 NCBI chr10:52,586,089...52,596,154
Ensembl chr10:52,586,509...52,596,564
JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4421275|PMID:19913509) MGI
Ensembl
PMID:19913509 GO_REF:0000107 MGI:4421275 NCBI chr 4:76,854,218...76,857,143
Ensembl chr 4:76,854,150...76,857,148
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3821807|PMID:18794329) MGI
Ensembl
PMID:18794329 GO_REF:0000107 MGI:3821807 NCBI chr15:31,159,214...31,295,891
Ensembl chr15:31,159,223...31,295,893
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr17:29,997,397...30,001,704
Ensembl chr17:29,997,401...30,001,707
JBrowse link
G GDF3 growth differentiation factor 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611720|PMID:16368929) MGI
Ensembl
PMID:16368929 GO_REF:0000107 MGI:3611720 NCBI chr 5:62,835,926...62,841,827
Ensembl chr 5:62,835,880...62,841,884
JBrowse link
G KDM6A lysine demethylase 6A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5448135|PMID:22949634) MGI
Ensembl
PMID:22949634 GO_REF:0000107 MGI:5448135 NCBI chr  X:39,953,764...40,154,197
Ensembl chr  X:39,953,814...40,154,029
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2157654|PMID:11291865) Ensembl
MGI
PMID:11291865 GO_REF:0000107 MGI:2157654 NCBI chr12:38,450,708...38,457,583
Ensembl chr12:38,450,708...38,456,139
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA
IBA
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:55,322,016...55,327,600
Ensembl chr 7:55,322,274...55,323,539
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
(MGI:4459001|PMID:20346937) MGI
TreeGrafter
GO_Central
PMID:20346937 GO_REF:0000033 GO_REF:0000118 MGI:4459001 NCBI chr 7:55,341,941...55,345,824
Ensembl chr 7:55,342,935...55,345,879
JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5438472|PMID:21998026) MGI
Ensembl
PMID:21998026 GO_REF:0000107 MGI:5438472
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr 1:186,028,575...186,039,026
Ensembl chr 1:186,028,579...186,038,229
JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chr  X:87,315,355...87,319,580
Ensembl chr  X:87,315,358...87,319,113
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4459001|PMID:20346937) MGI
Ensembl
PMID:20346937 GO_REF:0000107 MGI:4459001 NCBI chr 1:82,427,956...82,432,844
Ensembl chr 1:82,428,047...82,432,638
JBrowse link
G SMAD4 SMAD family member 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1195384|PMID:9420335) MGI
Ensembl
PMID:9420335 GO_REF:0000107 MGI:1195384 NCBI chr 1:100,521,843...100,633,501
Ensembl chr 1:100,589,850...100,628,029
JBrowse link
G TBX6 T-box transcription factor 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4459001|PMID:20346937) MGI
Ensembl
PMID:20346937 GO_REF:0000107 MGI:4459001 NCBI chr 3:18,271,983...18,277,864
Ensembl chr 3:18,271,983...18,277,580
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr14:29,390,903...29,400,454
Ensembl chr14:29,390,335...29,400,440
JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COBL cordon-bleu WH2 repeat protein involved_in ISO (MGI:76306|PMID:7586755) BHF-UCL PMID:7586755 MGI:76306 NCBI chr 9:136,850,521...137,055,249 JBrowse link
G DLL1 delta like canonical Notch ligand 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3034157|PMID:14960495) MGI
Ensembl
PMID:14960495 GO_REF:0000107 MGI:3034157 NCBI chr 1:198,815...211,346
Ensembl chr 1:199,358...211,346
JBrowse link
G MEOX1 mesenchyme homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2669571|PMID:12925591) MGI
Ensembl
PMID:12925591 GO_REF:0000107 MGI:2669571 NCBI chr12:19,431,397...19,452,430
Ensembl chr12:19,431,420...19,451,993
JBrowse link
G MEOX2 mesenchyme homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2669571|PMID:12925591) MGI
Ensembl
PMID:12925591 GO_REF:0000107 MGI:2669571 NCBI chr 9:84,945,178...85,009,939
Ensembl chr 9:84,943,199...85,010,157
JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI1 abl interactor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3577662|PMID:15755804) MGI
Ensembl
PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr10:48,939,407...49,069,269
Ensembl chr10:48,939,446...49,069,441
JBrowse link
G ATM ATM serine/threonine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624894|PMID:16687486) MGI
Ensembl
PMID:16687486 GO_REF:0000107 MGI:3624894 NCBI chr 9:36,620,656...36,759,555
Ensembl chr 9:36,620,658...36,759,552
JBrowse link
G AXIN2 axin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3037351|PMID:12636920) MGI
Ensembl
PMID:12636920 GO_REF:0000107 MGI:3037351 NCBI chr12:12,311,293...12,343,207
Ensembl chr12:12,311,298...12,343,200
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3702797|PMID:16943278) MGI
Ensembl
PMID:16943278 GO_REF:0000107 MGI:3702797 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,790
JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in IEA
ISS
Ensembl
CAFA
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:264,277,549...264,301,731
Ensembl chr 1:264,276,987...264,301,713
JBrowse link
G DLL1 delta like canonical Notch ligand 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3578712|PMID:15902259) MGI
Ensembl
PMID:15902259 GO_REF:0000107 MGI:3578712 NCBI chr 1:198,815...211,346
Ensembl chr 1:199,358...211,346
JBrowse link
G DLL3 delta like canonical Notch ligand 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1095777|PMID:9272948)
(MGI:3620337|PMID:15170697)
MGI
Ensembl
PMID:9272948 PMID:15170697 GO_REF:0000107 MGI:1095777 MGI:3620337 NCBI chr 6:48,135,738...48,155,373
Ensembl chr 6:48,147,635...48,155,292
JBrowse link
G EP300 E1A binding protein p300 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3583034|PMID:15937931) MGI
Ensembl
PMID:15937931 GO_REF:0000107 MGI:3583034 NCBI chr 5:7,311,165...7,394,515
Ensembl chr 5:7,311,171...7,393,760
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3821807|PMID:18794329) MGI
Ensembl
PMID:18794329 GO_REF:0000107 MGI:3821807 NCBI chr15:31,159,214...31,295,891
Ensembl chr15:31,159,223...31,295,893
JBrowse link
G FOXB1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:111,997,638...112,000,550
Ensembl chr 1:111,997,642...112,000,550
JBrowse link
G FOXC1 forkhead box C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:837,088...840,593
Ensembl chr 7:837,171...838,805
JBrowse link
G FOXC2 forkhead box C2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:2,552,141...2,555,041
Ensembl chr 6:2,552,862...2,554,367
JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1928688|PMID:11124112) MGI
Ensembl
PMID:11124112 GO_REF:0000107 MGI:1928688 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659
JBrowse link
G HES7 hes family bHLH transcription factor 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2152470|PMID:11641270), (MGI:4367298|PMID:19779553)
(MGI:3046002|PMID:15170214)
MGI
Ensembl
PMID:11641270 PMID:15170214 PMID:19779553 GO_REF:0000107 MGI:2152470 MGI:3046002 MGI:4367298 NCBI chr12:53,334,350...53,339,336
Ensembl chr12:53,333,907...53,337,575
JBrowse link
G KAT2A lysine acetyltransferase 2A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3583034|PMID:15937931)
(MGI:3709911|PMID:17325035)
MGI
Ensembl
PMID:15937931 PMID:17325035 GO_REF:0000107 MGI:3583034 MGI:3709911 NCBI chr12:20,638,493...20,647,464
Ensembl chr12:20,638,497...20,647,461
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1334099|PMID:10090727)
(MGI:3510574|PMID:15545629)
MGI
Ensembl
PMID:10090727 PMID:15545629 GO_REF:0000107 MGI:1334099 MGI:3510574 NCBI chr 8:113,824,511...113,944,078
Ensembl chr 8:113,825,161...113,944,070
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3774705|PMID:18234727) MGI
Ensembl
PMID:18234727 GO_REF:0000107 MGI:3774705 NCBI chr 3:1,721,044...1,819,426
Ensembl chr 3:1,810,892...1,820,048
JBrowse link
G LOC100155738 protocadherin-8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2451199|PMID:12591245) MGI
Ensembl
PMID:12591245 GO_REF:0000107 MGI:2451199 NCBI chr11:26,127,398...26,133,481
Ensembl chr11:26,127,401...26,132,123
JBrowse link
G LOC102161418 interferon-induced transmembrane protein 1-like acts_upstream_of_or_within ISO (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 NCBI chr 2:156,364...157,650 JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
JBrowse link
G MED12 mediator complex subunit 12 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4839544|PMID:20589884) MGI
Ensembl
PMID:20589884 GO_REF:0000107 MGI:4839544 NCBI chr  X:57,150,884...57,174,367
Ensembl chr  X:57,150,919...57,175,333
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:3578712 NCBI chr 7:55,341,941...55,345,824
Ensembl chr 7:55,342,935...55,345,879
JBrowse link
G MIB1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3603078|PMID:16000382) MGI
Ensembl
PMID:16000382 GO_REF:0000107 MGI:3603078 NCBI chr 6:106,917,995...107,043,144
Ensembl chr 6:106,917,718...107,040,079
JBrowse link
G MSGN1 mesogenin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1928575|PMID:11124811), (MGI:5545970|PMID:21750544) MGI
Ensembl
PMID:11124811 PMID:21750544 GO_REF:0000107 MGI:1928575 MGI:5545970 NCBI chr 3:120,033,980...120,034,624
Ensembl chr 3:120,034,043...120,034,624
JBrowse link
G MYF5 myogenic factor 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3849775|PMID:19531352)
(MGI:78390|PMID:8565825)
(MGI:1861090|PMID:10929709)
MGI
Ensembl
PMID:8565825 PMID:10929709 PMID:19531352 GO_REF:0000107 MGI:1861090 MGI:3849775 MGI:78390 NCBI chr 5:100,753,440...100,755,558
Ensembl chr 5:100,752,890...100,755,494
JBrowse link
G MYF6 myogenic factor 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:76810|PMID:7588068) MGI
Ensembl
PMID:7588068 GO_REF:0000107 MGI:76810 NCBI chr 5:100,762,918...100,764,771
Ensembl chr 5:100,762,917...100,764,773
JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr15:88,425,861...88,528,417
Ensembl chr15:88,425,142...88,528,326
JBrowse link
G NKX3-1 NK3 homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:7,783,296...7,787,036
Ensembl chr14:7,783,323...7,787,033
JBrowse link
G NLE1 notchless homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5608942|PMID:24875805) Ensembl
MGI
PMID:24875805 GO_REF:0000107 MGI:5608942 NCBI chr12:40,035,518...40,044,395
Ensembl chr12:40,035,547...40,044,397
JBrowse link
G PALB2 partner and localizer of BRCA2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4459579|PMID:20484223) MGI
Ensembl
PMID:20484223 GO_REF:0000107 MGI:4459579 NCBI chr 3:22,586,881...22,612,837
Ensembl chr 3:22,586,856...22,612,834
JBrowse link
G PAX1 paired box 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3590033|PMID:16093716) MGI
Ensembl
PMID:16093716 GO_REF:0000107 MGI:3590033 NCBI chr17:29,421,117...29,436,481
Ensembl chr17:29,422,129...29,431,990
JBrowse link
G PLXNA2 plexin A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:134,584,760...134,800,471
Ensembl chr 9:134,584,406...134,796,063
JBrowse link
G POFUT1 protein O-fucosyltransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2660984|PMID:12697902) MGI
Ensembl
PMID:12697902 GO_REF:0000107 MGI:2660984 NCBI chr17:35,856,557...35,883,918
Ensembl chr17:35,856,575...35,882,964
JBrowse link
G POGLUT1 protein O-glucosyltransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1267118|PMID:9636176) MGI
Ensembl
PMID:9636176 GO_REF:0000107 MGI:1267118 NCBI chr13:140,763,231...140,793,645
Ensembl chr13:140,764,216...140,793,596
JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr13:76,945,318...77,148,521
Ensembl chr13:76,945,395...77,147,072
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624894|PMID:16687486) MGI
Ensembl
PMID:16687486 GO_REF:0000107 MGI:3624894 NCBI chr 4:79,687,375...79,850,146
Ensembl chr 4:79,687,375...79,846,656
JBrowse link
G PSEN1 presenilin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:87649|PMID:9153393)
(MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553)
MGI
Ensembl
PMID:9153393 PMID:10557208 PMID:19779553 GO_REF:0000107 MGI:1347695 MGI:4367298 MGI:87649 NCBI chr 7:96,478,179...96,567,884
Ensembl chr 7:96,478,190...96,569,130
JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553) MGI PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 NCBI chr10:14,532,556...14,561,862
Ensembl chr10:14,532,767...14,577,251
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4367298|PMID:19779553) MGI
Ensembl
PMID:19779553 GO_REF:0000107 MGI:4367298 NCBI chr 8:19,933,035...20,166,746
Ensembl chr 8:19,922,779...20,166,754
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3715395|PMID:17531978) MGI
Ensembl
PMID:17531978 GO_REF:0000107 MGI:3715395 NCBI chr 1:82,427,956...82,432,844
Ensembl chr 1:82,428,047...82,432,638
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (MGI:3037488|PMID:14745966) MGI PMID:14745966 MGI:3037488 NCBI chr14:2,803,840...3,035,384
Ensembl chr14:2,804,061...3,035,296
JBrowse link
G SEMA3C semaphorin 3C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:99,114,649...99,432,683
Ensembl chr 9:99,251,715...99,433,224
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618960|PMID:16467359) MGI
Ensembl
PMID:16467359 GO_REF:0000107 MGI:3618960 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618960|PMID:16467359) MGI
Ensembl
PMID:16467359 GO_REF:0000107 MGI:3618960 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,144...75,345,921
JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618021|PMID:15183723) MGI
Ensembl
PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr 1:164,998,457...165,124,455
Ensembl chr 1:164,998,103...165,124,449
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:3,144,262...3,145,702
Ensembl chr 9:3,144,277...3,145,720
JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:3044041|PMID:15155583) MGI
GO_Central
TreeGrafter
PMID:15155583 GO_REF:0000033 GO_REF:0000118 MGI:3044041 NCBI chr 1:53,836,939...53,867,460
Ensembl chr 1:53,838,189...53,867,254
JBrowse link
G TBXT T-box transcription factor T acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
(MGI:64493|PMID:8293872)
(MGI:3701028|PMID:16835439)
(MGI:3056222|PMID:15384171)
MGI
TreeGrafter
GO_Central
Ensembl
PMID:8293872 PMID:15384171 PMID:16835439 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:3056222 MGI:3701028 MGI:64493 NCBI chr 1:2,717,165...2,725,561
Ensembl chr 1:2,717,165...2,725,601
JBrowse link
G TCAP titin-cap involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:22,651,666...22,652,904
Ensembl chr12:22,651,664...22,653,722
JBrowse link
G TCF15 transcription factor 15 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:84545|PMID:8955271) MGI
Ensembl
PMID:8955271 GO_REF:0000107 MGI:84545 NCBI chr17:34,626,682...34,632,881
Ensembl chr17:34,626,670...34,633,263
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr14:29,390,903...29,400,454
Ensembl chr14:29,390,335...29,400,440
JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709913|PMID:17320900) MGI
Ensembl
PMID:17320900 GO_REF:0000107 MGI:3709913 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,644...52,953,818
JBrowse link
G TTN titin involved_in ISO (MGI:1314551|PMID:9817758) BHF-UCL PMID:9817758 MGI:1314551 NCBI chr15:84,226,953...84,501,320 JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3037351|PMID:12636920)
(MGI:3611726|PMID:16291790), (MGI:64780|PMID:8299937)
MGI
Ensembl
PMID:8299937 PMID:12636920 PMID:16291790 GO_REF:0000107 MGI:3037351 MGI:3611726 MGI:64780 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,153,970...51,202,176
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4413372|PMID:19795512) MGI
Ensembl
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
G XRCC2 X-ray repair cross complementing 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3708426|PMID:17116431) MGI
Ensembl
PMID:17116431 GO_REF:0000107 MGI:3708426 NCBI chr18:4,808,428...4,834,281
Ensembl chr18:4,808,470...4,835,802
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (MGI:3590396|PMID:16157277), (MGI:3624924|PMID:16598713) MGI PMID:16157277 PMID:16598713 MGI:3590396 MGI:3624924 NCBI chr15:7,498,879...7,631,347
Ensembl chr15:7,499,026...7,632,655
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,757,920...118,765,102
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,757,920...118,765,102
JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDF11 growth differentiation factor 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3701017|PMID:16790475) MGI
Ensembl
PMID:16790475 GO_REF:0000107 MGI:3701017 NCBI chr 5:21,191,322...21,199,024
Ensembl chr 5:21,191,251...21,201,804
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEUROG1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:137,763,091...137,766,787
Ensembl chr 2:137,765,942...137,766,682
JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:137,675,245...137,678,880
Ensembl chr 2:137,672,407...137,678,612
JBrowse link
G WT1 WT1 transcription factor involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:28,411,467...28,456,007
Ensembl chr 2:28,411,803...28,455,997
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr14:97,487,854...97,490,118
Ensembl chr14:97,487,226...97,490,288
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:3055483|PMID:15469977) MGI
GO_Central
TreeGrafter
PMID:15469977 GO_REF:0000033 GO_REF:0000118 MGI:3055483 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3793375|PMID:18257070) MGI
Ensembl
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3793375|PMID:18257070) MGI
Ensembl
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,144...75,345,921
JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO RGD PMID:25281935 RGD:12832757 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr15:88,425,861...88,528,417
Ensembl chr15:88,425,142...88,528,326
JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1858546|PMID:10809672) MGI
Ensembl
PMID:10809672 GO_REF:0000107 MGI:1858546 NCBI chr 1:145,508,658...145,697,017
Ensembl chr 1:145,508,534...145,695,666
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17778
    multicellular organismal process 9039
      pattern specification process 492
        regionalization 446
          anterior/posterior pattern specification 240
            anterior region determination 0
            anterior/posterior axis specification + 61
            anterior/posterior pattern specification involved in kidney development + 1
            anterior/posterior pattern specification, imaginal disc + 0
            compartment pattern specification + 4
            embryonic heart tube anterior/posterior pattern specification + 3
            forebrain anterior/posterior pattern specification 4
            foregut regionalization + 3
            neural plate anterior/posterior regionalization + 6
            periodic partitioning by pair rule gene 0
            posterior abdomen determination 0
            rostrocaudal neural tube patterning + 14
            somitogenesis + 77
            spinal cord anterior/posterior patterning + 1
            thorax and anterior abdomen determination 3
Path 2
Term Annotations click to browse term
  biological_process 17778
    developmental process 6704
      anatomical structure development 6299
        multicellular organism development 5089
          pattern specification process 492
            regionalization 446
              anterior/posterior pattern specification 240
                anterior region determination 0
                anterior/posterior axis specification + 61
                anterior/posterior pattern specification involved in kidney development + 1
                anterior/posterior pattern specification, imaginal disc + 0
                compartment pattern specification + 4
                embryonic heart tube anterior/posterior pattern specification + 3
                forebrain anterior/posterior pattern specification 4
                foregut regionalization + 3
                neural plate anterior/posterior regionalization + 6
                periodic partitioning by pair rule gene 0
                posterior abdomen determination 0
                rostrocaudal neural tube patterning + 14
                somitogenesis + 77
                spinal cord anterior/posterior patterning + 1
                thorax and anterior abdomen determination 3
paths to the root