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ONTOLOGY REPORT - ANNOTATIONS


Term:anterior/posterior pattern specification
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Accession:GO:0009952 term browser browse the term
Definition:The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
Synonyms:related_synonym: anterior/posterior pattern formation


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anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin receptor IIA acts_upstream_of_or_within IGI (MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118) MGI PMID:10452853 PMID:16991118 MGI:1344152 MGI:3689276 NCBI chr 2:48,814,109...48,903,264
Ensembl chr 2:48,814,109...48,903,269
JBrowse link
G Acvr2b activin receptor IIB acts_upstream_of_or_within
involved_in
IMP
IGI
ISO
(MGI:3689276|PMID:16991118), (MGI:3695190|PMID:16845371), (MGI:894948|PMID:9242489)
(MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118)
(MGI:3525050|PMID:15542835)
(MGI:3695190|PMID:16845371)
MGI PMID:9242489 PMID:10452853 PMID:15542835 PMID:16845371 PMID:16991118 GO_REF:0000096 MGI:1344152 MGI:3525050 MGI:3689276 MGI:3695190 MGI:4834177 MGI:894948 NCBI chr 9:119,401,583...119,442,148
Ensembl chr 9:119,402,118...119,434,995
JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IGI
IMP
(MGI:3703483|PMID:17067568)
(MGI:3612223|PMID:16368932)
(MGI:3530707|PMID:15652703), (MGI:3578600|PMID:15872003)
MGI PMID:15652703 PMID:15872003 PMID:16368932 PMID:17067568 MGI:3530707 MGI:3578600 MGI:3612223 MGI:3703483 NCBI chr 9:71,215,789...71,296,243
Ensembl chr 9:71,215,789...71,296,243
JBrowse link
G Alx1 ALX homeobox 1 acts_upstream_of_or_within IGI (MGI:1314705|PMID:9847249) MGI PMID:9847249 MGI:1314705 NCBI chr10:103,007,847...103,029,549
Ensembl chr10:102,998,707...103,030,215
JBrowse link
G Alx4 aristaless-like homeobox 4 acts_upstream_of_or_within IMP
IGI
(MGI:1098911|PMID:9374397), (MGI:1314705|PMID:9847249)
(MGI:1314705|PMID:9847249)
MGI PMID:9374397 PMID:9847249 MGI:1098911 MGI:1314705 NCBI chr 2:93,642,434...93,681,341
Ensembl chr 2:93,642,384...93,681,339
JBrowse link
G Apc APC, WNT signaling pathway regulator acts_upstream_of_or_within IMP (MGI:2449253|PMID:12645927) MGI PMID:12645927 MGI:2449253 NCBI chr18:34,220,297...34,322,190
Ensembl chr18:34,220,924...34,322,552
JBrowse link
G Arc activity regulated cytoskeletal-associated protein acts_upstream_of_or_within IMP (MGI:1355000|PMID:10727859) MGI PMID:10727859 MGI:1355000 NCBI chr15:74,669,081...74,672,570
Ensembl chr15:74,669,083...74,672,570
JBrowse link
G Barx1 BarH-like homeobox 1 acts_upstream_of_or_within IMP (MGI:3766872|PMID:17855428) MGI PMID:17855428 MGI:3766872 NCBI chr13:48,663,036...48,666,507
Ensembl chr13:48,662,998...48,666,507
JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:108,660,629...108,666,925
Ensembl chr 6:108,660,629...108,666,925
JBrowse link
G Bhlhe41 basic helix-loop-helix family, member e41 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:145,858,243...145,865,420
Ensembl chr 6:145,858,243...145,865,558
JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IMP (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
G Bmpr2 bone morphogenetic protein receptor, type II (serine/threonine kinase) acts_upstream_of_or_within IGI
IMP
(MGI:3525050|PMID:15542835)
(MGI:1855789|PMID:10772805)
MGI PMID:10772805 PMID:15542835 MGI:1855789 MGI:3525050 NCBI chr 1:59,764,279...59,878,081
Ensembl chr 1:59,763,400...59,879,014
JBrowse link
G Bptf bromodomain PHD finger transcription factor acts_upstream_of_or_within IMP (MGI:3821803|PMID:18794365)
(MGI:3840601|PMID:18974875)
MGI PMID:18794365 PMID:18974875 MGI:3821803 MGI:3840601 NCBI chr11:107,033,081...107,132,147
Ensembl chr11:107,033,081...107,132,127
JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within IMP (MGI:3525050|PMID:15542835) MGI PMID:15542835 MGI:3525050 NCBI chr 1:134,074,865...134,079,155
Ensembl chr 1:134,075,170...134,079,120
JBrowse link
G Cdon cell adhesion molecule-related/down-regulated by oncogenes acts_upstream_of_or_within IMP (MGI:4422144|PMID:19754878) MGI PMID:19754878 MGI:4422144 NCBI chr 9:35,421,528...35,507,652
Ensembl chr 9:35,421,128...35,507,652
JBrowse link
G Cdx1 caudal type homeobox 1 acts_upstream_of_or_within IGI
IMP
(MGI:2154839|PMID:11784046)
(MGI:2154839|PMID:11784046), (MGI:77274|PMID:7585967)
MGI PMID:7585967 PMID:11784046 MGI:2154839 MGI:77274 NCBI chr18:61,018,862...61,036,199
Ensembl chr18:61,018,862...61,036,199
JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within IGI (MGI:4398801|PMID:19853565) MGI PMID:19853565 MGI:4398801 NCBI chr 5:147,300,900...147,307,249
Ensembl chr 5:147,300,805...147,307,270
JBrowse link
G Cdx4 caudal type homeobox 4 acts_upstream_of_or_within IGI (MGI:4398801|PMID:19853565) MGI PMID:19853565 MGI:4398801 NCBI chr  X:103,321,398...103,330,224
Ensembl chr  X:103,321,398...103,330,592
JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within IMP (MGI:4429791|PMID:19357712)
(MGI:3835694|PMID:18849982)
MGI PMID:18849982 PMID:19357712 MGI:3835694 MGI:4429791 NCBI chr15:85,898,758...86,034,223
Ensembl chr15:85,898,929...86,033,777
Ensembl chr15:85,898,929...86,033,777
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within IDA (MGI:1197794|PMID:9501024) MGI PMID:9501024 MGI:1197794 NCBI chr 4:82,881,751...82,885,151
Ensembl chr 4:82,881,751...82,885,148
JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 involved_in
acts_upstream_of_or_within
IBA
IGI
(MGI:6201960|PMID:21873635)
(MGI:2136711|PMID:11412024)
GO_Central
MGI
PMID:11412024 PMID:21873635 MGI:2136711 MGI:6201960 NCBI chr 1:34,535,648...34,544,311
Ensembl chr 1:34,535,648...34,544,313
JBrowse link
G Crkl v-crk avian sarcoma virus CT10 oncogene homolog-like acts_upstream_of_or_within IGI (MGI:3614586|PMID:16399080) MGI PMID:16399080 MGI:3614586 NCBI chr16:17,451,985...17,487,440
Ensembl chr16:17,451,987...17,487,434
JBrowse link
G Ctnnbip1 catenin beta interacting protein 1 acts_upstream_of_or_within IMP (MGI:3044441|PMID:15148409) MGI PMID:15148409 MGI:3044441 NCBI chr 4:149,518,241...149,566,437
Ensembl chr 4:149,518,236...149,566,437
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 acts_upstream_of_or_within IGI
IMP
(MGI:3703483|PMID:17067568) MGI PMID:17067568 MGI:3703483 NCBI chr19:37,697,738...37,701,536
Ensembl chr19:37,697,798...37,701,536
JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily c, polypeptide 1 acts_upstream_of_or_within IGI (MGI:3703483|PMID:17067568) MGI PMID:17067568 MGI:3703483 NCBI chr19:37,685,112...37,693,320
Ensembl chr19:37,685,581...37,693,398
JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within IGI
IMP
(MGI:3578670|PMID:15917450)
(MGI:2386059|PMID:12196586)
MGI PMID:12196586 PMID:15917450 MGI:2386059 MGI:3578670 NCBI chr19:59,458,690...59,465,357
Ensembl chr19:59,458,372...59,465,357
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within IGI (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr 2:148,042,877...148,046,969
Ensembl chr 2:148,042,877...148,046,969
JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within IMP (MGI:1934969|PMID:11358868) MGI PMID:11358868 MGI:1934969 NCBI chr15:76,667,829...76,671,614
Ensembl chr15:76,668,225...76,669,948
JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within IMP (MGI:4367921|PMID:19877275) MGI PMID:19877275 MGI:4367921 NCBI chr 7:44,894,305...44,900,624
Ensembl chr 7:44,896,079...44,902,631
JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within IMP (MGI:5509072|PMID:23918385)
(MGI:1339513|PMID:10391213)
MGI PMID:10391213 PMID:23918385 MGI:1339513 MGI:5509072 NCBI chr10:128,880,524...128,891,718
Ensembl chr10:128,882,295...128,891,718
JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IGI (MGI:5439039|PMID:22841643) MGI PMID:22841643 MGI:5439039 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP
IGI
(MGI:5439039|PMID:22841643)
(MGI:3053244|PMID:15315762)
MGI PMID:15315762 PMID:22841643 MGI:3053244 MGI:5439039 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 acts_upstream_of_or_within IMP (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 NCBI chr 5:88,659,233...88,676,171
Ensembl chr 5:88,659,448...88,676,171
JBrowse link
G Helt helt bHLH transcription factor involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:46,292,043...46,294,748
Ensembl chr 8:46,292,039...46,294,671
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr16:30,065,357...30,067,796
Ensembl chr16:30,064,384...30,067,796
JBrowse link
G Hes2 hes family bHLH transcription factor 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:152,158,867...152,162,469
Ensembl chr 4:152,158,867...152,162,469
JBrowse link
G Hes3 hes family bHLH transcription factor 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:152,285,250...152,291,911
Ensembl chr 4:152,285,972...152,291,662
JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:154,960,626...154,962,372
Ensembl chr 4:154,960,923...154,962,371
JBrowse link
G Hes6 hairy and enhancer of split 6 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:91,411,483...91,414,038
Ensembl chr 1:91,411,483...91,414,038
JBrowse link
G Hes7 hes family bHLH transcription factor 7 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:69,118,906...69,124,054
Ensembl chr11:69,120,404...69,124,055
JBrowse link
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:8,663,359...8,667,038
Ensembl chr 3:8,663,359...8,667,256
JBrowse link
G Hey2 hairy/enhancer-of-split related with YRPW motif 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:30,832,359...30,842,783
Ensembl chr10:30,832,359...30,842,801
JBrowse link
G Heyl hairy/enhancer-of-split related with YRPW motif-like involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:123,233,556...123,249,870
Ensembl chr 4:123,233,556...123,249,875
JBrowse link
G Hhex hematopoietically expressed homeobox involved_in IMP (MGI:3777521|PMID:16936074) UniProt PMID:16936074 MGI:3777521 NCBI chr19:37,434,841...37,440,731
Ensembl chr19:37,434,810...37,440,731
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 acts_upstream_of_or_within IGI (MGI:3619785|PMID:16537918) MGI PMID:16537918 MGI:3619785 NCBI chr 3:103,739,815...103,791,894
Ensembl chr 3:103,739,815...103,791,563
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 acts_upstream_of_or_within IGI (MGI:3619785|PMID:16537918) MGI PMID:16537918 MGI:3619785 NCBI chr 6:38,687,512...38,876,331
Ensembl chr 6:38,694,390...38,876,165
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IMP (MGI:3578600|PMID:15872003) MGI PMID:15872003 MGI:3578600 NCBI chr11:83,850,209...83,905,917
Ensembl chr11:83,850,063...83,905,819
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within IMP
IGI
(MGI:3055618|PMID:15367676)
(MGI:1346308|PMID:10529420)
MGI PMID:10529420 PMID:15367676 MGI:1346308 MGI:3055618 NCBI chr 6:52,155,367...52,160,007
Ensembl chr 6:52,155,590...52,158,317
JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within IGI (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr 6:52,231,197...52,240,854
Ensembl chr 6:52,231,197...52,240,854
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within IGI (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr 6:52,242,105...52,245,810
Ensembl chr 6:52,242,106...52,245,810
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within IMP (MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:1098901 NCBI chr 6:52,162,417...52,164,831
Ensembl chr 6:52,162,417...52,164,831
JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within
involved_in
IGI
IBA
(MGI:67616|PMID:7913519)
(MGI:1195045|PMID:9441667)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:7913519 PMID:9441667 PMID:21873635 MGI:1195045 MGI:6201960 MGI:67616 NCBI chr 6:52,169,059...52,213,067
Ensembl chr 6:52,169,062...52,213,336
JBrowse link
G Hoxa4 homeobox A4 acts_upstream_of_or_within
involved_in
IMP
IBA
IGI
(MGI:67413|PMID:7918106)
(MGI:6201960|PMID:21873635)
(MGI:74948|PMID:7628700)
MGI
GO_Central
PMID:7628700 PMID:7918106 PMID:21873635 MGI:6201960 MGI:67413 MGI:74948 NCBI chr 6:52,189,682...52,191,703
Ensembl chr 6:52,189,671...52,191,753
JBrowse link
G Hoxa5 homeobox A5 involved_in
acts_upstream_of_or_within
IBA
IMP
IGI
(MGI:6201960|PMID:21873635)
(MGI:1203259|PMID:9603431), (MGI:63693|PMID:7901120)
(MGI:3723390|PMID:17417799)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:7901120 PMID:9603431 PMID:17417799 PMID:17626057 PMID:21873635 MGI:1203259 MGI:3720535 MGI:3723390 MGI:6201960 MGI:63693 NCBI chr 6:52,201,754...52,204,587
Ensembl chr 6:52,201,754...52,204,587
JBrowse link
G Hoxa6 homeobox A6 involved_in
acts_upstream_of_or_within
IBA
IGI
IMP
(MGI:6201960|PMID:21873635)
(MGI:3720535|PMID:17626057)
(MGI:67413|PMID:7918106)
GO_Central
MGI
PMID:7918106 PMID:17626057 PMID:21873635 MGI:3720535 MGI:6201960 MGI:67413 NCBI chr 6:52,204,858...52,208,672
Ensembl chr 6:52,206,288...52,208,722
JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within
involved_in
IGI
IBA
(MGI:1313067|PMID:9784603)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:9784603 PMID:21873635 MGI:1313067 MGI:6201960 NCBI chr 6:52,215,623...52,218,573
Ensembl chr 6:52,214,491...52,221,854
JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within
involved_in
IGI
IMP
IBA
(MGI:3720535|PMID:17626057)
(MGI:78984|PMID:8625797)
(MGI:85243|PMID:9013929)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:8625797 PMID:9013929 PMID:17626057 PMID:21873635 MGI:3720535 MGI:6201960 MGI:78984 MGI:85243 NCBI chr 6:52,223,097...52,227,370
Ensembl chr 6:52,223,100...52,231,089
JBrowse link
G Hoxb1 homeobox B1 acts_upstream_of_or_within IGI (MGI:1859107|PMID:10885747)
(MGI:1346308|PMID:10529420)
MGI PMID:10529420 PMID:10885747 MGI:1346308 MGI:1859107 NCBI chr11:96,365,746...96,368,254
Ensembl chr11:96,365,752...96,368,256
JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within IMP
IGI
(MGI:85074|PMID:9012503)
(MGI:1859107|PMID:10885747)
MGI PMID:9012503 PMID:10885747 MGI:1859107 MGI:85074 NCBI chr11:96,351,632...96,354,020
Ensembl chr11:96,350,525...96,354,012
JBrowse link
G Hoxb3 homeobox B3 acts_upstream_of_or_within
involved_in
IGI
IBA
(MGI:1859107|PMID:10885747)
(MGI:1195045|PMID:9441667)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:9441667 PMID:10885747 PMID:21873635 MGI:1195045 MGI:1859107 MGI:6201960 NCBI chr11:96,307,101...96,347,930
Ensembl chr11:96,323,326...96,347,930
JBrowse link
G Hoxb4 homeobox B4 acts_upstream_of_or_within
involved_in
IGI
IBA
(MGI:85074|PMID:9012503)
(MGI:6201960|PMID:21873635)
(MGI:1859107|PMID:10885747)
(MGI:74948|PMID:7628700)
MGI
GO_Central
PMID:7628700 PMID:9012503 PMID:10885747 PMID:21873635 MGI:1859107 MGI:6201960 MGI:74948 MGI:85074 NCBI chr11:96,318,267...96,321,638
Ensembl chr11:96,318,267...96,321,638
JBrowse link
G Hoxb5 homeobox B5 acts_upstream_of_or_within
involved_in
IGI
IMP
IBA
(MGI:1859107|PMID:10885747)
(MGI:70296|PMID:7828847)
(MGI:3720535|PMID:17626057)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:7828847 PMID:10885747 PMID:17626057 PMID:21873635 MGI:1859107 MGI:3720535 MGI:6201960 MGI:70296 NCBI chr11:96,303,512...96,306,121
Ensembl chr11:96,303,336...96,306,121
JBrowse link
G Hoxb6 homeobox B6 acts_upstream_of_or_within
involved_in
IMP
IGI
IBA
(MGI:70296|PMID:7828847)
(MGI:6201960|PMID:21873635)
(MGI:1859107|PMID:10885747)
(MGI:3720535|PMID:17626057)
MGI
GO_Central
PMID:7828847 PMID:10885747 PMID:17626057 PMID:21873635 MGI:1859107 MGI:3720535 MGI:6201960 MGI:70296 NCBI chr11:96,292,814...96,301,569
Ensembl chr11:96,292,476...96,301,569
JBrowse link
G Hoxb7 homeobox B7 involved_in
acts_upstream_of_or_within
IBA
IMP
IGI
(MGI:6201960|PMID:21873635)
(MGI:1313067|PMID:9784603)
(MGI:1859107|PMID:10885747)
GO_Central
MGI
PMID:9784603 PMID:10885747 PMID:21873635 MGI:1313067 MGI:1859107 MGI:6201960 NCBI chr11:96,285,604...96,290,163
Ensembl chr11:96,286,623...96,290,162
JBrowse link
G Hoxb8 homeobox B8 acts_upstream_of_or_within IGI
IMP
(MGI:1933164|PMID:11311170)
(MGI:2681074|PMID:14623233)
(MGI:1349283|PMID:10559485), (MGI:1933164|PMID:11311170)
(MGI:1859107|PMID:10885747)
MGI PMID:10559485 PMID:10885747 PMID:11311170 PMID:14623233 MGI:1349283 MGI:1859107 MGI:1933164 MGI:2681074 NCBI chr11:96,279,401...96,285,325
Ensembl chr11:96,281,905...96,285,315
JBrowse link
G Hoxb9 homeobox B9 acts_upstream_of_or_within
involved_in
IGI
IMP
IBA
(MGI:85243|PMID:9013929)
(MGI:6201960|PMID:21873635)
(MGI:1859107|PMID:10885747)
(MGI:3720535|PMID:17626057)
MGI
GO_Central
PMID:9013929 PMID:10885747 PMID:17626057 PMID:21873635 MGI:1859107 MGI:3720535 MGI:6201960 MGI:85243 NCBI chr11:96,271,330...96,276,595
Ensembl chr11:96,271,457...96,276,595
JBrowse link
G Hoxc10 homeobox C10 acts_upstream_of_or_within IGI (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr15:102,966,796...102,971,898
Ensembl chr15:102,966,796...102,971,893
JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within IGI (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr15:102,954,526...102,956,701
Ensembl chr15:102,954,427...102,957,708
JBrowse link
G Hoxc13 homeobox C13 acts_upstream_of_or_within IMP (MGI:1195385|PMID:9420327) MGI PMID:9420327 MGI:1195385 NCBI chr15:102,921,131...102,928,814
Ensembl chr15:102,921,103...102,928,814
JBrowse link
G Hoxc4 homeobox C4 acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:81673|PMID:8660891)
(MGI:6201960|PMID:21873635)
(MGI:79121|PMID:8626021)
MGI
GO_Central
PMID:8626021 PMID:8660891 PMID:21873635 MGI:6201960 MGI:79121 MGI:81673 NCBI chr15:103,018,097...103,036,856
Ensembl chr15:103,018,934...103,036,852
JBrowse link
G Hoxc5 homeobox C5 involved_in
acts_upstream_of_or_within
IBA
IGI
(MGI:6201960|PMID:21873635)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:17626057 PMID:21873635 MGI:3720535 MGI:6201960 NCBI chr15:103,014,008...103,017,429
Ensembl chr15:102,967,443...103,017,429
JBrowse link
G Hoxc6 homeobox C6 involved_in
acts_upstream_of_or_within
IBA
IGI
(MGI:6201960|PMID:21873635)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:17626057 PMID:21873635 MGI:3720535 MGI:6201960 NCBI chr15:102,998,226...103,011,882
Ensembl chr15:102,998,257...103,011,881
JBrowse link
G Hoxc8 homeobox C8 acts_upstream_of_or_within IMP
IGI
(MGI:1933164|PMID:11311170) MGI PMID:11311170 MGI:1933164 NCBI chr15:102,990,539...102,994,275
Ensembl chr15:102,990,607...102,994,111
JBrowse link
G Hoxc9 homeobox C9 acts_upstream_of_or_within
involved_in
IMP
IBA
IGI
(MGI:73980|PMID:7547473)
(MGI:6201960|PMID:21873635)
(MGI:3720535|PMID:17626057)
MGI
GO_Central
PMID:7547473 PMID:17626057 PMID:21873635 MGI:3720535 MGI:6201960 MGI:73980 NCBI chr15:102,977,032...102,984,444
Ensembl chr15:102,976,439...102,985,099
JBrowse link
G Hoxd10 homeobox D10 acts_upstream_of_or_within IGI (MGI:2667742|PMID:12869760)
(MGI:1350864|PMID:10642795)
MGI PMID:10642795 PMID:12869760 MGI:1350864 MGI:2667742 NCBI chr 2:74,684,273...74,695,106
Ensembl chr 2:74,691,924...74,695,105
JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within IGI (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr 2:74,679,558...74,687,016
Ensembl chr 2:74,679,557...74,687,016
JBrowse link
G Hoxd13 homeobox D13 acts_upstream_of_or_within IMP (MGI:63627|PMID:8106170) MGI PMID:8106170 MGI:63627 NCBI chr 2:74,668,225...74,671,603
Ensembl chr 2:74,668,310...74,671,599
JBrowse link
G Hoxd3 homeobox D3 acts_upstream_of_or_within
involved_in
IGI
IMP
IBA
(MGI:1195045|PMID:9441667)
(MGI:63793|PMID:7910549), (MGI:67616|PMID:7913519)
(MGI:6201960|PMID:21873635)
(MGI:67616|PMID:7913519)
MGI
GO_Central
PMID:7910549 PMID:7913519 PMID:9441667 PMID:21873635 MGI:1195045 MGI:6201960 MGI:63793 MGI:67616 NCBI chr 2:74,711,993...74,748,271
Ensembl chr 2:74,711,927...74,748,442
JBrowse link
G Hoxd4 homeobox D4 acts_upstream_of_or_within
involved_in
IMP
IGI
IBA
(MGI:72992|PMID:7750651)
(MGI:74948|PMID:7628700)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:7628700 PMID:7750651 PMID:21873635 MGI:6201960 MGI:72992 MGI:74948 NCBI chr 2:74,721,978...74,729,160
Ensembl chr 2:74,711,929...74,729,160
JBrowse link
G Hoxd8 homeobox D8 acts_upstream_of_or_within IGI
IMP
(MGI:1933164|PMID:11311170) MGI PMID:11311170 MGI:1933164 NCBI chr 2:74,704,615...74,707,933
Ensembl chr 2:74,704,615...74,707,933
JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within
involved_in
IMP
IGI
IBA
(MGI:78984|PMID:8625797)
(MGI:1350864|PMID:10642795)
(MGI:6201960|PMID:21873635)
(MGI:3720535|PMID:17626057)
MGI
GO_Central
PMID:8625797 PMID:10642795 PMID:17626057 PMID:21873635 MGI:1350864 MGI:3720535 MGI:6201960 MGI:78984 NCBI chr 2:74,697,763...74,700,208
Ensembl chr 2:74,697,727...74,700,208
JBrowse link
G Htt huntingtin acts_upstream_of_or_within IMP (MGI:3609520|PMID:16109169) MGI PMID:16109169 MGI:3609520 NCBI chr 5:34,761,721...34,912,534
Ensembl chr 5:34,761,740...34,912,534
JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 acts_upstream_of_or_within IMP (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 NCBI chr 7:140,967,429...140,969,827
Ensembl chr 7:140,967,221...140,969,825
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within IMP (MGI:3579954|PMID:15930098)
(MGI:2660994|PMID:12701101)
MGI PMID:12701101 PMID:15930098 MGI:2660994 MGI:3579954 NCBI chr14:57,424,064...57,517,936
Ensembl chr14:57,424,062...57,517,936
JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within IMP (MGI:1336552|PMID:10220415) MGI PMID:10220415 MGI:1336552 NCBI chr11:53,565,701...53,604,248
Ensembl chr11:53,567,379...53,601,967
JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A acts_upstream_of_or_within IMP
IGI
(MGI:3625774|PMID:16618927)
(MGI:3530206|PMID:15741318)
MGI PMID:15741318 PMID:16618927 MGI:3530206 MGI:3625774 NCBI chr 9:44,803,355...44,881,352
Ensembl chr 9:44,803,355...44,881,296
JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IGI (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 involved_in
acts_upstream_of_or_within
IBA
IGI
(MGI:6201960|PMID:21873635)
(MGI:3045836|PMID:15142971)
GO_Central
MGI
PMID:15142971 PMID:21873635 MGI:3045836 MGI:6201960 NCBI chr19:3,584,825...3,686,585
Ensembl chr19:3,584,828...3,686,564
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP
IGI
(MGI:3603992|PMID:16126904)
(MGI:4413372|PMID:19795512)
(MGI:3045836|PMID:15142971)
MGI PMID:15142971 PMID:16126904 PMID:19795512 MGI:3045836 MGI:3603992 MGI:4413372 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Mllt3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 acts_upstream_of_or_within IMP (MGI:2387913|PMID:12242306) MGI PMID:12242306 MGI:2387913 NCBI chr 4:87,769,925...88,033,407
Ensembl chr 4:87,769,925...88,033,364
JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within IGI (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr 5:37,820,491...37,824,585
Ensembl chr 5:37,820,485...37,824,583
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IGI (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr13:53,466,881...53,472,780
Ensembl chr13:53,466,884...53,473,074
JBrowse link
G Neurod1 neurogenic differentiation 1 acts_upstream_of_or_within IMP (MGI:3613103|PMID:16368089) MGI PMID:16368089 MGI:3613103 NCBI chr 2:79,452,637...79,456,636
Ensembl chr 2:79,452,521...79,456,751
JBrowse link
G Nodal nodal acts_upstream_of_or_within IMP
IGI
(MGI:3056019|PMID:15302604)
(MGI:2155575|PMID:11311163)
(MGI:3624254|PMID:16496285)
(MGI:2136068|PMID:11418863), (MGI:3042338|PMID:15004567)
MGI PMID:11311163 PMID:11418863 PMID:15004567 PMID:15302604 PMID:16496285 MGI:2136068 MGI:2155575 MGI:3042338 MGI:3056019 MGI:3624254 NCBI chr10:61,417,972...61,425,338
Ensembl chr10:61,417,972...61,425,338
JBrowse link
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 acts_upstream_of_or_within IMP (MGI:3578605|PMID:15829524) MGI PMID:15829524 MGI:3578605 NCBI chr 7:70,351,946...70,366,746
Ensembl chr 7:70,351,944...70,366,735
JBrowse link
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within IGI (MGI:3039992|PMID:15105370) MGI PMID:15105370 MGI:3039992 NCBI chr11:21,994,764...22,001,651
Ensembl chr11:21,994,764...22,002,897
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within IMP
IGI
(MGI:1197794|PMID:9501024)
(MGI:2136711|PMID:11412024)
(MGI:2656991|PMID:12652306)
MGI PMID:9501024 PMID:11412024 PMID:12652306 MGI:1197794 MGI:2136711 MGI:2656991 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IGI
IMP
(MGI:3578670|PMID:15917450)
(MGI:2386059|PMID:12196586)
MGI PMID:12196586 PMID:15917450 MGI:2386059 MGI:3578670 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Pbx1 pre B cell leukemia homeobox 1 acts_upstream_of_or_within IMP (MGI:2151355|PMID:11566859) MGI PMID:11566859 MGI:2151355 NCBI chr 1:168,119,364...168,432,365
Ensembl chr 1:168,119,364...168,432,270
JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within IGI
IMP
(MGI:3530206|PMID:15741318)
(MGI:80640|PMID:8625838)
MGI PMID:8625838 PMID:15741318 MGI:3530206 MGI:80640 NCBI chr11:97,688,821...97,702,434
Ensembl chr11:97,688,823...97,700,497
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO
IMP
(MGI:3795695|PMID:18519639) MGI
BHF-UCL
PMID:18519639 GO_REF:0000096 MGI:3795695 MGI:4834177 NCBI chr19:17,432,314...17,837,712
Ensembl chr19:17,432,319...17,837,632
JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within IMP (MGI:3847057|PMID:19412548) MGI PMID:19412548 MGI:3847057 NCBI chr 5:65,605,719...65,698,236
Ensembl chr 5:65,605,721...65,698,273
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IGI
IMP
(MGI:2154839|PMID:11784046)
(MGI:2154839|PMID:11784046), (MGI:60925|PMID:8388780)
MGI PMID:8388780 PMID:11784046 MGI:2154839 MGI:60925 NCBI chr15:102,234,938...102,257,522
Ensembl chr15:102,234,938...102,257,517
JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within IGI
IMP
(MGI:3628673|PMID:16624538)
(MGI:1926247|PMID:11060235), (MGI:3628673|PMID:16624538)
MGI PMID:11060235 PMID:16624538 MGI:1926247 MGI:3628673 NCBI chr17:34,020,792...34,024,680
Ensembl chr17:34,020,792...34,024,680
JBrowse link
G Scmh1 sex comb on midleg homolog 1 acts_upstream_of_or_within IMP (MGI:3703453|PMID:17215307) MGI PMID:17215307 MGI:3703453 NCBI chr 4:120,405,150...120,530,200
Ensembl chr 4:120,405,281...120,530,186
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 acts_upstream_of_or_within IGI (MGI:3530206|PMID:15741318) MGI PMID:15741318 MGI:3530206 NCBI chr 1:54,985,169...55,027,501
Ensembl chr 1:54,985,169...55,027,481
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IGI (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr 3:83,765,750...83,774,314
Ensembl chr 3:83,766,321...83,774,316
JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (MGI:1928592|PMID:11118883)
(MGI:2135419|PMID:11389830)
MGI PMID:11118883 PMID:11389830 MGI:1928592 MGI:2135419 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IMP (MGI:1201281|PMID:9529255), (MGI:2136068|PMID:11418863)
(MGI:2667288|PMID:12842913)
MGI PMID:9529255 PMID:11418863 PMID:12842913 MGI:1201281 MGI:2136068 MGI:2667288 NCBI chr18:76,241,090...76,311,748
Ensembl chr18:76,241,580...76,310,963
JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IMP (MGI:3051711|PMID:15215210) MGI PMID:15215210 MGI:3051711 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IMP (MGI:5438143|PMID:22987639) MGI PMID:22987639 MGI:5438143 NCBI chr 6:29,735,497...29,761,366
Ensembl chr 6:29,735,503...29,761,365
JBrowse link
G T brachyury, T-box transcription factor T acts_upstream_of_or_within IMP (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr17:8,434,423...8,442,496
Ensembl chr17:8,434,423...8,442,496
JBrowse link
G Tbx1 T-box 1 acts_upstream_of_or_within IMP
IGI
(MGI:3039048|PMID:15084464)
(MGI:3614586|PMID:16399080)
MGI PMID:15084464 PMID:16399080 MGI:3039048 MGI:3614586 NCBI chr16:18,580,979...18,590,671
Ensembl chr16:18,580,979...18,590,671
JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within IMP (MGI:84545|PMID:8955271) MGI PMID:8955271 MGI:84545 NCBI chr 2:152,143,056...152,149,097
Ensembl chr 2:152,143,561...152,149,097
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:110,939,608...110,946,158
Ensembl chr 9:110,939,603...110,946,158
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I acts_upstream_of_or_within IGI (MGI:3695190|PMID:16845371) MGI PMID:16845371 MGI:3695190 NCBI chr 4:47,353,222...47,414,926
Ensembl chr 4:47,353,222...47,414,931
JBrowse link
G Tshz1 teashirt zinc finger family member 1 acts_upstream_of_or_within IMP (MGI:3720547|PMID:17586487) MGI PMID:17586487 MGI:3720547 NCBI chr18:84,011,627...84,087,708
Ensembl chr18:84,011,627...84,087,706
JBrowse link
G Tulp3 tubby-like protein 3 acts_upstream_of_or_within IMP (MGI:3844764|PMID:19334287) MGI PMID:19334287 MGI:3844764 NCBI chr 6:128,321,140...128,355,873
Ensembl chr 6:128,321,161...128,355,851
JBrowse link
G Vangl2 VANGL planar cell polarity 2 acts_upstream_of_or_within IMP (MGI:3835694|PMID:18849982) MGI PMID:18849982 MGI:3835694 NCBI chr 1:172,000,960...172,027,318
Ensembl chr 1:172,000,960...172,028,444
JBrowse link
G Wnt3 wingless-type MMTV integration site family, member 3 acts_upstream_of_or_within IMP (MGI:1341483|PMID:10431240) MGI PMID:10431240 MGI:1341483 NCBI chr11:103,774,175...103,818,021
Ensembl chr11:103,774,150...103,817,957
JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A acts_upstream_of_or_within IDA (MGI:3044441|PMID:15148409) MGI PMID:15148409 MGI:3044441 NCBI chr11:59,248,036...59,290,751
Ensembl chr11:59,248,033...59,290,752
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IMP (MGI:3039991|PMID:15073149), (MGI:4413372|PMID:19795512) MGI PMID:15073149 PMID:19795512 MGI:3039991 MGI:4413372 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within IGI
IMP
(MGI:3628673|PMID:16624538) MGI PMID:16624538 MGI:3628673 NCBI chr12:108,792,945...108,820,148
Ensembl chr12:108,792,973...108,820,148
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within IMP (MGI:1859075|PMID:10835630) MGI PMID:10835630 MGI:1859075 NCBI chr 9:48,651,797...48,836,225
Ensembl chr 9:48,654,297...48,836,222
JBrowse link
G Zic3 zinc finger protein of the cerebellum 3 acts_upstream_of_or_within IGI (MGI:3624254|PMID:16496285) MGI PMID:16496285 MGI:3624254 NCBI chr  X:58,030,628...58,036,630
Ensembl chr  X:58,022,700...58,041,736
JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aurka aurora kinase A acts_upstream_of_or_within IMP (MGI:5449118|PMID:22939930) MGI PMID:22939930 MGI:5449118 NCBI chr 2:172,356,190...172,370,886
Ensembl chr 2:172,356,190...172,370,535
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IGI (MGI:1889107|PMID:10964473) MGI PMID:10964473 MGI:1889107 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Cdx1 caudal type homeobox 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr18:61,018,862...61,036,199
Ensembl chr18:61,018,862...61,036,199
JBrowse link
G Cdx2 caudal type homeobox 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:147,300,900...147,307,249
Ensembl chr 5:147,300,805...147,307,270
JBrowse link
G Cdx4 caudal type homeobox 4 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:103,321,398...103,330,224
Ensembl chr  X:103,321,398...103,330,592
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within IGI
IDA
(MGI:3042338|PMID:15004567)
(MGI:3776330|PMID:18241853)
MGI PMID:15004567 PMID:18241853 MGI:3042338 MGI:3776330 NCBI chr 4:82,881,751...82,885,151
Ensembl chr 4:82,881,751...82,885,148
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 acts_upstream_of_or_within IMP (MGI:1353237|PMID:10662781) MGI PMID:10662781 MGI:1353237 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 involved_in IDA (MGI:4821075|PMID:16434966) BHF-UCL PMID:16434966 MGI:4821075 NCBI chr10:127,290,793...127,296,291
Ensembl chr10:127,290,774...127,296,288
Ensembl chr10:127,290,774...127,296,288
JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within IGI (MGI:1889107|PMID:10964473) MGI PMID:10964473 MGI:1889107 NCBI chr  X:52,272,426...52,613,974
Ensembl chr  X:52,272,426...52,613,950
JBrowse link
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 acts_upstream_of_or_within IGI (MGI:3530185|PMID:15680351) MGI PMID:15680351 MGI:3530185 NCBI chr 3:8,663,359...8,667,038
Ensembl chr 3:8,663,359...8,667,256
JBrowse link
G Hey2 hairy/enhancer-of-split related with YRPW motif 2 acts_upstream_of_or_within IGI (MGI:3530185|PMID:15680351) MGI PMID:15680351 MGI:3530185 NCBI chr10:30,832,359...30,842,783
Ensembl chr10:30,832,359...30,842,801
JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within IMP (MGI:2448170|PMID:12490556) MGI PMID:12490556 MGI:2448170 NCBI chr19:46,031,525...46,048,145
Ensembl chr19:46,031,570...46,045,214
JBrowse link
G Lefty1 left right determination factor 1 acts_upstream_of_or_within IGI (MGI:3042338|PMID:15004567) MGI PMID:15004567 MGI:3042338 NCBI chr 1:180,935,022...180,938,401
Ensembl chr 1:180,935,022...180,938,400
JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IGI (MGI:1346311|PMID:10529425) MGI PMID:10529425 MGI:1346311 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Nodal nodal acts_upstream_of_or_within IMP (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chr10:61,417,972...61,425,338
Ensembl chr10:61,417,972...61,425,338
JBrowse link
G Pgap1 post-GPI attachment to proteins 1 acts_upstream_of_or_within IGI
IMP
(MGI:1346311|PMID:10529425) MGI PMID:10529425 MGI:1346311 NCBI chr 1:54,473,000...54,557,684
Ensembl chr 1:54,472,994...54,557,684
JBrowse link
G Rnf2 ring finger protein 2 acts_upstream_of_or_within IMP (MGI:2389282|PMID:12183370) MGI PMID:12183370 MGI:2389282 NCBI chr 1:151,469,398...151,500,991
Ensembl chr 1:151,458,004...151,500,955
JBrowse link
G Six2 sine oculis-related homeobox 2 involved_in IDA (MGI:3794506|PMID:18321982) UniProt PMID:18321982 MGI:3794506 NCBI chr17:85,662,736...85,688,254
Ensembl chr17:85,684,277...85,688,274
JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (MGI:2176418|PMID:11731796) MGI PMID:11731796 MGI:2176418 NCBI chr 4:155,154,075...155,222,535
Ensembl chr 4:155,154,075...155,222,592
JBrowse link
G Tbx18 T-box18 acts_upstream_of_or_within IMP (MGI:3044041|PMID:15155583) MGI PMID:15155583 MGI:3044041 NCBI chr 9:87,702,800...87,731,260
Ensembl chr 9:87,702,800...87,731,260
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within IGI (MGI:3776330|PMID:18241853) MGI PMID:18241853 MGI:3776330 NCBI chr 9:110,939,608...110,946,158
Ensembl chr 9:110,939,603...110,946,158
JBrowse link
G Wls wntless WNT ligand secretion mediator involved_in IMP (MGI:4397730|PMID:19841259) UniProt PMID:19841259 MGI:4397730 NCBI chr 3:159,839,650...159,938,666
Ensembl chr 3:159,839,672...159,938,664
JBrowse link
G Wnt3 wingless-type MMTV integration site family, member 3 acts_upstream_of_or_within IMP (MGI:3771246|PMID:18028899) MGI PMID:18028899 MGI:3771246 NCBI chr11:103,774,175...103,818,021
Ensembl chr11:103,774,150...103,817,957
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IMP (MGI:3580203|PMID:15870281) MGI PMID:15870281 MGI:3580203 NCBI chr10:117,070,127...117,148,474
Ensembl chr10:117,069,427...117,148,534
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:64,730,558...64,737,750
Ensembl chr 1:64,730,558...64,737,751
JBrowse link
G Tasor transcription activation suppressor involved_in IMP (MGI:6109647|PMID:28839193) UniProt PMID:28839193 MGI:6109647 NCBI chr14:27,423,674...27,483,555
Ensembl chr14:27,428,834...27,483,555
JBrowse link
G Tbx3 T-box 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:119,670,534...119,684,724
Ensembl chr 5:119,670,669...119,684,724
JBrowse link
G Tcf7l1 transcription factor 7 like 1 (T cell specific, HMG box) acts_upstream_of_or_within IMP (MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:3043490 NCBI chr 6:72,626,371...72,789,045
Ensembl chr 6:72,626,378...72,789,254
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within IMP (MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:1303194 NCBI chr 9:110,939,608...110,946,158
Ensembl chr 9:110,939,603...110,946,158
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A involved_in IDA (MGI:4835157|PMID:9054360) BHF-UCL PMID:9054360 MGI:4835157 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within
involved_in
IGI
IBA
(MGI:1891551|PMID:11029008)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:11029008 PMID:21873635 MGI:1891551 MGI:6201960 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within IMP (MGI:4839483|PMID:20630950) MGI PMID:20630950 MGI:4839483 NCBI chr  X:101,274,091...101,298,934
Ensembl chr  X:101,274,030...101,297,465
JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A acts_upstream_of_or_within IGI (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chr11:59,248,036...59,290,751
Ensembl chr11:59,248,033...59,290,752
JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within IMP (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within IMP (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chr 7:28,293,555...28,301,785
Ensembl chr 7:28,293,553...28,302,238
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within IMP (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chr 5:140,607,341...140,615,545
Ensembl chr 5:140,607,320...140,615,545
JBrowse link
G Notch1 notch 1 acts_upstream_of_or_within IMP (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within IMP (MGI:3611958|PMID:16314491) MGI PMID:16314491 MGI:3611958 NCBI chr 2:133,552,159...133,562,896
Ensembl chr 2:133,552,159...133,562,885
JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within IMP (MGI:3055632|PMID:15363409) MGI PMID:15363409 MGI:3055632 NCBI chr15:76,667,829...76,671,614
Ensembl chr15:76,668,225...76,669,948
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within IMP (MGI:87488|PMID:9136932) MGI PMID:9136932 MGI:87488 NCBI chr14:63,198,914...63,271,712
Ensembl chr14:63,198,922...63,271,692
JBrowse link
epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal acts_upstream_of_or_within IMP (MGI:2677178|PMID:14511481) MGI PMID:14511481 MGI:2677178 NCBI chr10:61,417,972...61,425,338
Ensembl chr10:61,417,972...61,425,338
JBrowse link
fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nog noggin involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:89,300,638...89,302,559
Ensembl chr11:89,300,638...89,302,332
JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fezf1 Fez family zinc finger 1 acts_upstream_of_or_within IGI (MGI:3702790|PMID:16971467) MGI PMID:16971467 MGI:3702790 NCBI chr 6:23,245,044...23,250,936
Ensembl chr 6:23,245,044...23,248,362
JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within IGI (MGI:3702790|PMID:16971467) MGI PMID:16971467 MGI:3702790 NCBI chr14:12,338,992...12,346,803
Ensembl chr14:12,342,094...12,348,189
JBrowse link
G Six3 sine oculis-related homeobox 3 acts_upstream_of_or_within IGI
IMP
(MGI:3772426|PMID:18094027) MGI PMID:18094027 MGI:3772426 NCBI chr17:85,613,608...85,626,191
Ensembl chr17:85,613,608...85,629,302
JBrowse link
G Wnt1 wingless-type MMTV integration site family, member 1 acts_upstream_of_or_within IGI (MGI:3772426|PMID:18094027) MGI PMID:18094027 MGI:3772426 NCBI chr15:98,789,857...98,793,830
Ensembl chr15:98,789,857...98,793,837
JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 acts_upstream_of_or_within IMP (MGI:892757|PMID:9169845) MGI PMID:9169845 MGI:892757 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin (cadherin associated protein), beta 1 acts_upstream_of_or_within IMP (MGI:4360856|PMID:19686689)
(MGI:4361775|PMID:19805295)
MGI PMID:19686689 PMID:19805295 MGI:4360856 MGI:4361775 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Wnt2 wingless-type MMTV integration site family, member 2 acts_upstream_of_or_within IGI (MGI:4360856|PMID:19686689) MGI PMID:19686689 MGI:4360856 NCBI chr 6:17,985,474...18,032,772
Ensembl chr 6:17,988,940...18,030,585
JBrowse link
G Wnt2b wingless-type MMTV integration site family, member 2B acts_upstream_of_or_within IGI (MGI:4360856|PMID:19686689) MGI PMID:19686689 MGI:4360856 NCBI chr 3:104,944,805...104,961,709
Ensembl chr 3:104,945,272...104,961,921
JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G En1 engrailed 1 acts_upstream_of_or_within IMP (MGI:3525936|PMID:15607945) MGI PMID:15607945 MGI:3525936 NCBI chr 1:120,602,487...120,607,991
Ensembl chr 1:120,602,418...120,607,992
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IMP (MGI:3720541|PMID:17601531) MGI PMID:17601531 MGI:3720541 NCBI chr19:45,736,491...45,742,941
Ensembl chr19:45,736,798...45,742,915
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within IMP (MGI:3624192|PMID:16651541) MGI PMID:16651541 MGI:3624192 NCBI chr 1:89,927,962...89,931,176
Ensembl chr 1:89,927,956...89,931,179
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:1891551|PMID:11029008), (MGI:4413372|PMID:19795512)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:11029008 PMID:19795512 PMID:21873635 MGI:1891551 MGI:4413372 MGI:6201960 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Wnt1 wingless-type MMTV integration site family, member 1 acts_upstream_of_or_within IMP (MGI:59176|PMID:2205396) MGI PMID:2205396 MGI:59176 NCBI chr15:98,789,857...98,793,830
Ensembl chr15:98,789,857...98,793,837
JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp3 single-stranded DNA binding protein 3 involved_in IMP (MGI:3578570|PMID:15857913) UniProt PMID:15857913 MGI:3578570 NCBI chr 4:106,911,470...107,049,694
Ensembl chr 4:106,910,701...107,049,694
JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 wingless-type MMTV integration site family, member 1 acts_upstream_of_or_within IMP (MGI:76584|PMID:8555108) MGI PMID:8555108 MGI:76584 NCBI chr15:98,789,857...98,793,830
Ensembl chr15:98,789,857...98,793,837
JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within IMP (MGI:3624192|PMID:16651541) MGI PMID:16651541 MGI:3624192 NCBI chr 1:89,927,962...89,931,176
Ensembl chr 1:89,927,956...89,931,179
JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IGI (MGI:2149154|PMID:11500373) MGI PMID:11500373 MGI:2149154 NCBI chr16:30,065,357...30,067,796
Ensembl chr16:30,064,384...30,067,796
JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within IGI (MGI:2149134|PMID:11522634) MGI PMID:11522634 MGI:2149134 NCBI chr 4:152,285,250...152,291,911
Ensembl chr 4:152,285,972...152,291,662
JBrowse link
G Kdm2b lysine (K)-specific demethylase 2B involved_in IMP (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chr 5:122,870,664...122,989,270
Ensembl chr 5:122,870,665...122,989,823
JBrowse link
negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx18 T-box18 involved_in IDA (MGI:3722519|PMID:17584735) BHF-UCL PMID:17584735 MGI:3722519 NCBI chr 9:87,702,800...87,731,260
Ensembl chr 9:87,702,800...87,731,260
JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fuz fuzzy planar cell polarity protein involved_in IMP (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr 7:44,894,305...44,900,624
Ensembl chr 7:44,896,079...44,902,631
JBrowse link
G Ofd1 OFD1, centriole and centriolar satellite protein involved_in IMP (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr  X:166,386,573...166,440,704
Ensembl chr  X:166,390,033...166,440,704
JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IMP (MGI:5545944|PMID:23072809) UniProt PMID:23072809 MGI:5545944 NCBI chr 5:140,607,341...140,615,545
Ensembl chr 5:140,607,320...140,615,545
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within IMP (MGI:5317364|PMID:21795391) MGI PMID:21795391 MGI:5317364 NCBI chr 2:25,180,758...25,183,339
Ensembl chr 2:25,180,758...25,183,339
JBrowse link
neural plate anterior/posterior regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr2 cadherin, EGF LAG seven-pass G-type receptor 2 involved_in IDA (MGI:3765258|PMID:12755329) BHF-UCL PMID:12755329 MGI:3765258 NCBI chr 3:108,390,848...108,416,069
Ensembl chr 3:108,390,851...108,415,552
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in IMP (MGI:4943609|PMID:21397848) UniProt PMID:21397848 MGI:4943609 NCBI chr11:59,783,893...59,787,657
Ensembl chr11:59,783,897...59,787,645
JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IMP (MGI:4946318|PMID:21383078) UniProt PMID:21383078 MGI:4946318 NCBI chr 1:156,255,296...156,304,304
Ensembl chr 1:156,255,296...156,303,664
JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog involved_in IMP (MGI:5559673|PMID:11044396) Roslin_Institute PMID:11044396 MGI:5559673 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Wnt8a wingless-type MMTV integration site family, member 8A acts_upstream_of_or_within IMP (MGI:3609071|PMID:16256739) MGI PMID:16256739 MGI:3609071 NCBI chr18:34,542,327...34,548,061
Ensembl chr18:34,542,313...34,548,273
JBrowse link
pole plasm assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr77 WD repeat domain 77 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:105,959,498...105,969,760
Ensembl chr 3:105,959,369...105,970,037
JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 E26 avian leukemia oncogene 2, 3' domain acts_upstream_of_or_within IMP (MGI:5546318|PMID:23552073) MGI PMID:23552073 MGI:5546318 NCBI chr16:95,702,407...95,721,049
Ensembl chr16:95,702,075...95,721,051
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within IMP (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr 2:148,042,877...148,046,969
Ensembl chr 2:148,042,877...148,046,969
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within IMP (MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:3611720 NCBI chr 6:122,605,403...122,610,087
Ensembl chr 6:122,605,403...122,610,087
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within IGI
IMP
(MGI:4950786|PMID:21445260) MGI PMID:21445260 MGI:4950786 NCBI chr19:37,434,841...37,440,731
Ensembl chr19:37,434,810...37,440,731
JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IMP (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within
involved_in
IGI
IBA
(MGI:4413372|PMID:19795512)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:19795512 PMID:21873635 MGI:4413372 MGI:6201960 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Nodal nodal acts_upstream_of_or_within IGI (MGI:4950786|PMID:21445260) MGI PMID:21445260 MGI:4950786 NCBI chr10:61,417,972...61,425,338
Ensembl chr10:61,417,972...61,425,338
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within IMP (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
G Srf serum response factor acts_upstream_of_or_within IMP (MGI:1312998|PMID:9799237) MGI PMID:9799237 MGI:1312998 NCBI chr17:46,546,838...46,558,267
Ensembl chr17:46,548,329...46,556,175
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IGI (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:101,104,989...101,251,832
Ensembl chr 9:101,105,084...101,251,795
JBrowse link
regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nog noggin involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:89,300,638...89,302,559
Ensembl chr11:89,300,638...89,302,332
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 involved_in IMP (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chr18:61,018,862...61,036,199
Ensembl chr18:61,018,862...61,036,199
JBrowse link
G Cdx2 caudal type homeobox 2 involved_in IMP (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chr 5:147,300,900...147,307,249
Ensembl chr 5:147,300,805...147,307,270
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IMP (MGI:5689216|PMID:26114479) UniProt PMID:26114479 MGI:5689216 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within IMP
IGI
(MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chr19:25,672,394...25,679,013
Ensembl chr19:25,672,411...25,678,991
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within
involved_in
IMP
ISO
(MGI:4367298|PMID:19779553) MGI PMID:19779553 GO_REF:0000096 MGI:4367298 MGI:4834177 NCBI chr 5:140,607,341...140,615,545
Ensembl chr 5:140,607,320...140,615,545
JBrowse link
G Notch1 notch 1 acts_upstream_of_or_within IMP (MGI:72973|PMID:7789282) MGI PMID:7789282 MGI:72973 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within IMP
IGI
(MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chr 1:78,101,267...78,197,136
Ensembl chr 1:78,101,267...78,197,134
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IMP
IGI
(MGI:3578715|PMID:15889094) MGI PMID:15889094 MGI:3578715 NCBI chr 9:71,215,789...71,296,243
Ensembl chr 9:71,215,789...71,296,243
JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase, H+ transporting, lysosomal accessory protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:12,587,759...12,617,051
Ensembl chr  X:12,587,801...12,617,049
JBrowse link
G Bmi1 Bmi1 polycomb ring finger oncogene acts_upstream_of_or_within IMP (MGI:82985|PMID:8887324) MGI PMID:8887324 MGI:82985 NCBI chr 2:18,677,018...18,686,629
Ensembl chr 2:18,677,018...18,686,629
JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 acts_upstream_of_or_within IMP (MGI:4421275|PMID:19913509) MGI PMID:19913509 MGI:4421275 NCBI chr 1:4,490,928...4,497,426
Ensembl chr 1:4,490,931...4,497,354
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IMP (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chr 1:119,545,032...119,649,096
Ensembl chr 1:119,545,037...119,649,000
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within IMP (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr 2:148,042,877...148,046,969
Ensembl chr 2:148,042,877...148,046,969
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within IMP (MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:3611720 NCBI chr 6:122,605,403...122,610,087
Ensembl chr 6:122,605,403...122,610,087
JBrowse link
G Kdm6a lysine (K)-specific demethylase 6A acts_upstream_of_or_within IMP (MGI:5448135|PMID:22949634) MGI PMID:22949634 MGI:5448135 NCBI chr  X:18,160,862...18,279,936
Ensembl chr  X:18,162,575...18,279,936
JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IMP (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Mesp1 mesoderm posterior 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:79,792,241...79,793,590
Ensembl chr 7:79,792,241...79,793,788
JBrowse link
G Mesp2 mesoderm posterior 2 involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:4459001|PMID:20346937)
GO_Central
MGI
PMID:20346937 PMID:21873635 MGI:4459001 MGI:6201960 NCBI chr 7:79,810,727...79,813,431
Ensembl chr 7:79,810,727...79,813,439
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within IMP (MGI:5438472|PMID:21998026) MGI PMID:21998026 MGI:5438472 NCBI chr 2:25,180,758...25,183,339
Ensembl chr 2:25,180,758...25,183,339
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within IMP (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within IGI (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chr  X:139,779,681...139,782,353
Ensembl chr  X:139,779,549...139,782,353
JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in
IGI
IDA
(MGI:4459001|PMID:20346937)
(MGI:3613215|PMID:16326386)
MGI
UniProt
PMID:16326386 PMID:20346937 MGI:3613215 MGI:4459001 NCBI chr 9:87,015,537...87,020,441
Ensembl chr 9:87,015,537...87,019,917
JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IMP (MGI:1195384|PMID:9420335) MGI PMID:9420335 MGI:1195384 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
G Tbx6 T-box 6 acts_upstream_of_or_within IDA (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chr 7:126,781,483...126,785,548
Ensembl chr 7:126,781,483...126,785,560
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within IMP (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr 5:124,540,791...124,550,503
Ensembl chr 5:124,540,695...124,550,506
JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat acts_upstream_of_or_within IEP (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr11:12,236,676...12,465,022
Ensembl chr11:12,236,608...12,464,960
JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within IMP (MGI:3034157|PMID:14960495) MGI PMID:14960495 MGI:3034157 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within IGI (MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:2669571 NCBI chr11:101,877,510...101,894,354
Ensembl chr11:101,877,510...101,894,374
JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within IGI (MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:2669571 NCBI chr12:37,108,540...37,179,534
Ensembl chr12:37,108,540...37,179,534
JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl interactor 1 acts_upstream_of_or_within IMP (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr 2:22,940,073...23,040,241
Ensembl chr 2:22,940,073...23,040,241
JBrowse link
G Atm ataxia telangiectasia mutated acts_upstream_of_or_within IGI (MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:3624894 NCBI chr 9:53,437,122...53,536,828
Ensembl chr 9:53,439,149...53,536,740
JBrowse link
G Axin2 axin 2 acts_upstream_of_or_within IDA (MGI:3037351|PMID:12636920) MGI PMID:12636920 MGI:3037351 NCBI chr11:108,917,828...108,950,783
Ensembl chr11:108,920,349...108,950,783
JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IMP (MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:3702797 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
G Crb2 crumbs family member 2 involved_in IMP (MGI:5296388|PMID:22072575) UniProt PMID:22072575 MGI:5296388 NCBI chr 2:37,776,225...37,799,103
Ensembl chr 2:37,776,249...37,799,103
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IMP
IGI
(MGI:5545944|PMID:23072809)
(MGI:3578712|PMID:15902259)
UniProt
MGI
PMID:15902259 PMID:23072809 MGI:3578712 MGI:5545944 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within IMP
IDA
(MGI:3620337|PMID:15170697)
(MGI:1095777|PMID:9272948)
MGI PMID:9272948 PMID:15170697 MGI:1095777 MGI:3620337 NCBI chr 7:28,293,555...28,301,785
Ensembl chr 7:28,293,553...28,302,238
JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within IGI (MGI:3583034|PMID:15937931) MGI PMID:15937931 MGI:3583034 NCBI chr15:81,586,209...81,652,077
Ensembl chr15:81,585,351...81,652,077
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IMP (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chr 1:119,545,032...119,649,096
Ensembl chr 1:119,545,037...119,649,000
JBrowse link
G Foxb1 forkhead box B1 involved_in IMP (MGI:3771770|PMID:18064677) UniProt PMID:18064677 MGI:3771770 NCBI chr 9:69,757,710...69,760,940
Ensembl chr 9:69,757,710...69,760,940
JBrowse link
G Foxc1 forkhead box C1 involved_in IGI (MGI:2150572|PMID:11562355) UniProt PMID:11562355 MGI:2150572 NCBI chr13:31,806,646...31,810,635
Ensembl chr13:31,806,633...31,812,476
JBrowse link
G Foxc2 forkhead box C2 involved_in IGI (MGI:2150572|PMID:11562355) UniProt PMID:11562355 MGI:2150572 NCBI chr 8:121,116,171...121,118,895
Ensembl chr 8:121,116,171...121,118,895
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within IMP (MGI:1928688|PMID:11124112) MGI PMID:11124112 MGI:1928688 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within IMP (MGI:3046002|PMID:15170214)
(MGI:2152470|PMID:11641270), (MGI:4367298|PMID:19779553)
MGI PMID:11641270 PMID:15170214 PMID:19779553 MGI:2152470 MGI:3046002 MGI:4367298 NCBI chr11:69,118,906...69,124,054
Ensembl chr11:69,120,404...69,124,055
JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 acts_upstream_of_or_within IMP (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 NCBI chr 7:140,967,429...140,969,827
Ensembl chr 7:140,967,221...140,969,825
JBrowse link
G Kat2a K(lysine) acetyltransferase 2A acts_upstream_of_or_within IGI
IMP
(MGI:3583034|PMID:15937931)
(MGI:3709911|PMID:17325035)
MGI PMID:15937931 PMID:17325035 MGI:3583034 MGI:3709911 NCBI chr11:100,704,746...100,712,485
Ensembl chr11:100,704,746...100,712,465
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IGI
IMP
(MGI:1334099|PMID:10090727)
(MGI:3510574|PMID:15545629)
MGI PMID:10090727 PMID:15545629 MGI:1334099 MGI:3510574 NCBI chr 3:131,110,297...131,224,357
Ensembl chr 3:131,110,471...131,224,356
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
IMP (MGI:5545944|PMID:23072809)
(MGI:3774705|PMID:18234727)
UniProt
MGI
PMID:18234727 PMID:23072809 MGI:3774705 MGI:5545944 NCBI chr 5:140,607,341...140,615,545
Ensembl chr 5:140,607,320...140,615,545
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IGI (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within IMP (MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:4839544 NCBI chr  X:101,274,091...101,298,934
Ensembl chr  X:101,274,030...101,297,465
JBrowse link
G Mesp2 mesoderm posterior 2 acts_upstream_of_or_within IGI
IMP
(MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:3578712 NCBI chr 7:79,810,727...79,813,431
Ensembl chr 7:79,810,727...79,813,439
JBrowse link
G Mib1 mindbomb E3 ubiquitin protein ligase 1 acts_upstream_of_or_within IMP (MGI:3603078|PMID:16000382) MGI PMID:16000382 MGI:3603078 NCBI chr18:10,725,625...10,818,578
Ensembl chr18:10,725,548...10,818,704
JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within IMP (MGI:1928575|PMID:11124811), (MGI:5545970|PMID:21750544) MGI PMID:11124811 PMID:21750544 MGI:1928575 MGI:5545970 NCBI chr12:11,208,382...11,208,948
Ensembl chr12:11,208,360...11,208,972
JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within IMP (MGI:78390|PMID:8565825)
(MGI:1861090|PMID:10929709)
(MGI:3849775|PMID:19531352)
MGI PMID:8565825 PMID:10929709 PMID:19531352 MGI:1861090 MGI:3849775 MGI:78390 NCBI chr10:107,482,908...107,486,927
Ensembl chr10:107,482,908...107,486,134
JBrowse link
G Myf6 myogenic factor 6 acts_upstream_of_or_within IMP (MGI:76810|PMID:7588068) MGI PMID:7588068 MGI:76810 NCBI chr10:107,492,848...107,494,723
Ensembl chr10:107,492,853...107,494,737
JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IMP (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr 2:80,500,512...80,581,182
Ensembl chr 2:80,500,512...80,581,380
JBrowse link
G Nkx3-1 NK3 homeobox 1 acts_upstream_of_or_within IEP (PMID:9621431) BHF-UCL PMID:9621431 NCBI chr14:69,190,692...69,194,658
Ensembl chr14:69,190,638...69,194,662
JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within IMP (MGI:5608942|PMID:24875805) MGI PMID:24875805 MGI:5608942 NCBI chr11:82,900,768...82,908,446
Ensembl chr11:82,900,768...82,908,411
JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within IMP (MGI:4459579|PMID:20484223) MGI PMID:20484223 MGI:4459579 NCBI chr 7:122,107,262...122,132,980
Ensembl chr 7:122,107,262...122,132,985
JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within IMP (MGI:3590033|PMID:16093716) MGI PMID:16093716 MGI:3590033 NCBI chr 2:147,361,930...147,375,049
Ensembl chr 2:147,361,925...147,393,295
JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within IMP (MGI:2451199|PMID:12591245) MGI PMID:12591245 MGI:2451199 NCBI chr14:79,766,772...79,771,312
Ensembl chr14:79,766,775...79,771,312
JBrowse link
G Plxna2 plexin A2 acts_upstream_of_or_within IEP (PMID:19666519) BHF-UCL PMID:19666519 NCBI chr 1:194,619,791...194,816,869
Ensembl chr 1:194,618,218...194,816,869
JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within IMP (MGI:2660984|PMID:12697902) MGI PMID:12697902 MGI:2660984 NCBI chr 2:153,241,532...153,271,029
Ensembl chr 2:153,241,533...153,270,247
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within IMP (MGI:1267118|PMID:9636176) MGI PMID:9636176 MGI:1267118 NCBI chr16:38,525,058...38,550,257
Ensembl chr16:38,525,137...38,550,258
JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide acts_upstream_of_or_within IGI (MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:3624894 NCBI chr16:15,637,444...15,842,239
Ensembl chr16:15,637,866...15,842,235
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within IGI
IMP
(MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553)
(MGI:87649|PMID:9153393)
MGI PMID:9153393 PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 MGI:87649 NCBI chr12:83,688,152...83,735,095
Ensembl chr12:83,688,152...83,735,199
JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within IGI (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553) MGI PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 NCBI chr 1:180,227,004...180,263,467
Ensembl chr 1:180,227,004...180,263,438
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region involved_in
acts_upstream_of_or_within
TAS
IMP
(MGI:3056004|PMID:15466160)
(MGI:4367298|PMID:19779553)
BHF-UCL
MGI
PMID:15466160 PMID:19779553 MGI:3056004 MGI:4367298 NCBI chr 5:53,555,779...53,657,445
Ensembl chr 5:53,466,152...53,657,362
JBrowse link
G Ripply2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within
IDA
IMP
(MGI:3613215|PMID:16326386)
(MGI:3715395|PMID:17531978)
UniProt
MGI
PMID:16326386 PMID:17531978 MGI:3613215 MGI:3715395 NCBI chr 9:87,015,537...87,020,441
Ensembl chr 9:87,015,537...87,019,917
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within IMP (MGI:3037488|PMID:14745966) MGI PMID:14745966 MGI:3037488 NCBI chr13:53,109,317...53,286,124
Ensembl chr13:53,109,312...53,286,124
JBrowse link
G Sema3c sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C acts_upstream_of_or_within IEP (PMID:19666519) BHF-UCL PMID:19666519 NCBI chr 5:17,574,816...17,730,268
Ensembl chr 5:17,574,281...17,730,268
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI
IEP
(MGI:3618960|PMID:16467359)
(PMID:10654605)
MGI
BHF-UCL
PMID:10654605 PMID:16467359 MGI:3618960 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IGI (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr 3:83,765,750...83,774,314
Ensembl chr 3:83,766,321...83,774,316
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IMP (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chr 9:63,646,766...63,757,994
Ensembl chr 9:63,646,767...63,757,994
JBrowse link
G T brachyury, T-box transcription factor T involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3056222|PMID:15384171)
(MGI:64493|PMID:8293872)
(MGI:3701028|PMID:16835439)
GO_Central
MGI
PMID:8293872 PMID:15384171 PMID:16835439 PMID:21873635 MGI:3056222 MGI:3701028 MGI:6201960 MGI:64493 NCBI chr17:8,434,423...8,442,496
Ensembl chr17:8,434,423...8,442,496
JBrowse link
G Tbx18 T-box18 involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3044041|PMID:15155583)
GO_Central
MGI
PMID:15155583 PMID:21873635 MGI:3044041 MGI:6201960 NCBI chr 9:87,702,800...87,731,260
Ensembl chr 9:87,702,800...87,731,260
JBrowse link
G Tbx19 T-box 19 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:165,137,834...165,160,773
Ensembl chr 1:165,137,855...165,160,773
JBrowse link
G Tcap titin-cap acts_upstream_of_or_within IEP (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr11:98,383,811...98,384,953
Ensembl chr11:98,383,811...98,384,953
JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within IMP (MGI:84545|PMID:8955271) MGI PMID:8955271 MGI:84545 NCBI chr 2:152,143,056...152,149,097
Ensembl chr 2:152,143,561...152,149,097
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within IMP (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr 5:124,540,791...124,550,503
Ensembl chr 5:124,540,695...124,550,506
JBrowse link
G Trp53 transformation related protein 53 acts_upstream_of_or_within IGI (MGI:3709913|PMID:17320900) MGI PMID:17320900 MGI:3709913 NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
G Ttn titin acts_upstream_of_or_within IEP (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr 2:76,703,980...76,982,557
Ensembl chr 2:76,703,980...76,982,547
JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A acts_upstream_of_or_within IMP (MGI:3037351|PMID:12636920)
(MGI:3611726|PMID:16291790), (MGI:64780|PMID:8299937)
MGI PMID:8299937 PMID:12636920 PMID:16291790 MGI:3037351 MGI:3611726 MGI:64780 NCBI chr11:59,248,036...59,290,751
Ensembl chr11:59,248,033...59,290,752
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IGI (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
G Xrcc2 X-ray repair complementing defective repair in Chinese hamster cells 2 acts_upstream_of_or_within IMP (MGI:3708426|PMID:17116431) MGI PMID:17116431 MGI:3708426 NCBI chr 5:25,689,814...25,705,797
Ensembl chr 5:25,689,812...25,705,825
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within IMP (MGI:3590396|PMID:16157277), (MGI:3624924|PMID:16598713) MGI PMID:16157277 PMID:16598713 MGI:3590396 MGI:3624924 NCBI chr 2:44,983,512...45,117,442
Ensembl chr 2:44,983,632...45,117,395
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IMP (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chr12:9,574,442...9,581,500
Ensembl chr12:9,570,116...9,581,500
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IMP (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chr12:9,574,442...9,581,500
Ensembl chr12:9,570,116...9,581,500
JBrowse link
specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within IMP (MGI:3701017|PMID:16790475) MGI PMID:16790475 MGI:3701017 NCBI chr10:128,880,524...128,891,718
Ensembl chr10:128,882,295...128,891,718
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:56,250,478...56,252,180
Ensembl chr13:56,250,478...56,252,163
JBrowse link
G Tifab TRAF-interacting protein with forkhead-associated domain, family member B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:56,173,703...56,179,002
Ensembl chr13:56,173,704...56,178,885
JBrowse link
G Wt1 Wilms tumor 1 homolog involved_in IMP (MGI:62488|PMID:8395349) UniProt PMID:8395349 MGI:62488 NCBI chr 2:105,126,529...105,173,614
Ensembl chr 2:105,126,529...105,173,616
JBrowse link
transforming growth factor beta receptor signaling pathway involved in primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal acts_upstream_of_or_within IMP (MGI:2677178|PMID:14511481) MGI PMID:14511481 MGI:2677178 NCBI chr10:61,417,972...61,425,338
Ensembl chr10:61,417,972...61,425,338
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within IGI (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr19:30,545,876...30,549,496
Ensembl chr19:30,545,863...30,549,665
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3055483|PMID:15469977)
GO_Central
MGI
PMID:15469977 PMID:21873635 MGI:3055483 MGI:6201960 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IGI (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr 3:83,765,750...83,774,314
Ensembl chr 3:83,766,321...83,774,316
JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog acts_upstream_of_or_within ISO MGI
RGD
PMID:25281935 GO_REF:0000096 MGI:4417868 RGD:12832757 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IMP (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr 2:80,500,512...80,581,182
Ensembl chr 2:80,500,512...80,581,380
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within IGI
IMP
(MGI:1858546|PMID:10809672) MGI PMID:10809672 MGI:1858546 NCBI chr 7:65,862,136...66,050,386
Ensembl chr 7:65,861,734...66,050,386
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23315
    multicellular organismal process 8932
      pattern specification process 482
        regionalization 380
          anterior/posterior pattern specification 233
            anterior region determination 0
            anterior/posterior axis specification + 56
            anterior/posterior pattern specification involved in kidney development + 2
            anterior/posterior pattern specification, imaginal disc + 0
            compartment pattern specification + 4
            embryonic heart tube anterior/posterior pattern specification + 3
            forebrain anterior/posterior pattern specification 4
            foregut regionalization + 3
            neural plate anterior/posterior regionalization + 6
            periodic partitioning by pair rule gene 0
            posterior abdomen determination + 0
            rostrocaudal neural tube patterning + 14
            somitogenesis + 77
            spinal cord anterior/posterior patterning + 1
            thorax and anterior abdomen determination + 3
Path 2
Term Annotations click to browse term
  biological_process 23315
    developmental process 7064
      anatomical structure development 6535
        multicellular organism development 5996
          pattern specification process 482
            regionalization 380
              anterior/posterior pattern specification 233
                anterior region determination 0
                anterior/posterior axis specification + 56
                anterior/posterior pattern specification involved in kidney development + 2
                anterior/posterior pattern specification, imaginal disc + 0
                compartment pattern specification + 4
                embryonic heart tube anterior/posterior pattern specification + 3
                forebrain anterior/posterior pattern specification 4
                foregut regionalization + 3
                neural plate anterior/posterior regionalization + 6
                periodic partitioning by pair rule gene 0
                posterior abdomen determination + 0
                rostrocaudal neural tube patterning + 14
                somitogenesis + 77
                spinal cord anterior/posterior patterning + 1
                thorax and anterior abdomen determination + 3
paths to the root