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ONTOLOGY REPORT - ANNOTATIONS


Term:anterior/posterior pattern specification
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Accession:GO:0009952 term browser browse the term
Definition:The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
Synonyms:related_synonym: anterior/posterior pattern formation


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anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC012531.3 novel protein, readthrough between HOXC10 and HOXC5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr12:53,985,845...54,034,888 JBrowse link
G ACVR2A activin A receptor type 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118) Ensembl
MGI
PMID:10452853 PMID:16991118 GO_REF:0000107 MGI:1344152 MGI:3689276 NCBI chr 2:147,844,517...147,930,822
Ensembl chr 2:147,844,517...147,930,826
JBrowse link
G ACVR2B activin A receptor type 2B involved_in
acts_upstream_of_or_within
IMP
ISO
(PMID:9916847)
(MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118)
(MGI:3695190|PMID:16845371)
(MGI:3689276|PMID:16991118), (MGI:3695190|PMID:16845371), (MGI:894948|PMID:9242489)
(MGI:3525050|PMID:15542835)
HGNC-UCL
MGI
PMID:9242489 PMID:9916847 PMID:10452853 PMID:15542835 PMID:16845371 PMID:16991118 MGI:1344152 MGI:3525050 MGI:3689276 MGI:3695190 MGI:894948 NCBI chr 3:38,453,890...38,493,142
Ensembl chr 3:38,453,890...38,493,142
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (MGI:3530707|PMID:15652703), (MGI:3578600|PMID:15872003)
(MGI:3703483|PMID:17067568)
(MGI:3612223|PMID:16368932)
MGI PMID:15652703 PMID:15872003 PMID:16368932 PMID:17067568 MGI:3530707 MGI:3578600 MGI:3612223 MGI:3703483 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G ALX1 ALX homeobox 1 acts_upstream_of_or_within ISO (MGI:1314705|PMID:9847249) MGI PMID:9847249 MGI:1314705 NCBI chr12:85,280,220...85,301,784
Ensembl chr12:85,280,220...85,301,784
JBrowse link
G ALX4 ALX homeobox 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1098911|PMID:9374397), (MGI:1314705|PMID:9847249)
(MGI:1314705|PMID:9847249)
Ensembl
MGI
PMID:9374397 PMID:9847249 GO_REF:0000107 MGI:1098911 MGI:1314705 NCBI chr11:44,260,440...44,310,139
Ensembl chr11:44,260,440...44,310,139
JBrowse link
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (MGI:2449253|PMID:12645927) MGI PMID:12645927 MGI:2449253 NCBI chr 5:112,707,498...112,846,239
Ensembl chr 5:112,707,498...112,846,239
JBrowse link
G ARC activity regulated cytoskeleton associated protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1355000|PMID:10727859) Ensembl
MGI
PMID:10727859 GO_REF:0000107 MGI:1355000 NCBI chr 8:142,611,049...142,614,479
Ensembl chr 8:142,611,049...142,614,479
JBrowse link
G BARX1 BARX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3766872|PMID:17855428) Ensembl
MGI
PMID:17855428 GO_REF:0000107 MGI:3766872 NCBI chr 9:93,951,627...93,955,355
Ensembl chr 9:93,951,627...93,955,355
JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:4,979,420...4,985,323
Ensembl chr 3:4,979,437...4,985,323
JBrowse link
G BHLHE41 basic helix-loop-helix family member e41 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:26,120,030...26,125,037
Ensembl chr12:26,120,030...26,125,037
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chr10:86,755,786...86,927,969
Ensembl chr10:86,756,601...86,932,838
Ensembl chr10:86,756,601...86,932,838
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:1855789|PMID:10772805)
(MGI:3525050|PMID:15542835)
BHF-UCL
MGI
PMID:10772805 PMID:15542835 GO_REF:0000024 MGI:1855789 MGI:3525050 NCBI chr 2:202,376,310...202,567,751
Ensembl chr 2:202,376,327...202,567,751
JBrowse link
G BPTF bromodomain PHD finger transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3840601|PMID:18974875)
(MGI:3821803|PMID:18794365)
Ensembl
MGI
PMID:18794365 PMID:18974875 GO_REF:0000107 MGI:3821803 MGI:3840601 NCBI chr17:67,825,503...67,984,378
Ensembl chr17:67,825,503...67,984,378
JBrowse link
G BTG2 BTG anti-proliferation factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3525050|PMID:15542835) Ensembl
MGI
PMID:15542835 GO_REF:0000107 MGI:3525050 NCBI chr 1:203,305,519...203,309,602
Ensembl chr 1:203,305,491...203,309,602
JBrowse link
G CDON cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4422144|PMID:19754878) Ensembl
MGI
PMID:19754878 GO_REF:0000107 MGI:4422144 NCBI chr11:125,956,813...126,063,335
Ensembl chr11:125,955,796...126,063,335
JBrowse link
G CDX1 caudal type homeobox 1 acts_upstream_of_or_within ISO (MGI:2154839|PMID:11784046), (MGI:77274|PMID:7585967) MGI PMID:7585967 PMID:11784046 MGI:2154839 MGI:77274 NCBI chr 5:150,166,778...150,184,558
Ensembl chr 5:150,166,778...150,184,558
JBrowse link
G CDX2 caudal type homeobox 2 acts_upstream_of_or_within ISO (MGI:4398801|PMID:19853565) MGI PMID:19853565 MGI:4398801 NCBI chr13:27,960,918...27,969,337
Ensembl chr13:27,960,918...27,969,315
JBrowse link
G CDX4 caudal type homeobox 4 acts_upstream_of_or_within ISO (MGI:4398801|PMID:19853565) MGI PMID:19853565 MGI:4398801 NCBI chr  X:73,447,053...73,455,171
Ensembl chr  X:73,447,254...73,455,245
JBrowse link
G CELSR1 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3835694|PMID:18849982)
(MGI:4429791|PMID:19357712)
Ensembl
MGI
PMID:18849982 PMID:19357712 GO_REF:0000107 MGI:3835694 MGI:4429791 NCBI chr22:46,361,174...46,537,620
Ensembl chr22:46,360,834...46,537,620
Ensembl chr22:46,360,834...46,537,620
Ensembl chr22:46,360,834...46,537,620
JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:10049596)
(MGI:1197794|PMID:9501024)
BHF-UCL
MGI
PMID:9501024 PMID:10049596 MGI:1197794 NCBI chr 9:14,715,082...14,724,308
Ensembl chr 9:14,719,724...14,722,733
JBrowse link
G CFC1 cripto, FRL-1, cryptic family 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:130,592,165...130,599,575
Ensembl chr 2:130,592,165...130,599,575
Ensembl chr 2:130,592,165...130,599,575
JBrowse link
G CFC1B cripto, FRL-1, cryptic family 1B involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:2136711|PMID:11412024)
GO_Central
MGI
PMID:11412024 PMID:21873635 MGI:2136711 NCBI chr 2:130,521,212...130,528,603
Ensembl chr 2:130,521,197...130,528,604
JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3614586|PMID:16399080) Ensembl
MGI
PMID:16399080 GO_REF:0000107 MGI:3614586 NCBI chr22:20,917,407...20,953,747
Ensembl chr22:20,917,407...20,953,747
JBrowse link
G CTNNBIP1 catenin beta interacting protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3044441|PMID:15148409) Ensembl
MGI
PMID:15148409 GO_REF:0000107 MGI:3044441 NCBI chr 1:9,848,276...9,910,322
Ensembl chr 1:9,848,276...9,910,336
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 acts_upstream_of_or_within ISO (MGI:3703483|PMID:17067568) MGI PMID:17067568 MGI:3703483 NCBI chr10:93,073,475...93,077,885
Ensembl chr10:93,073,475...93,077,885
JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3703483|PMID:17067568) BHF-UCL
MGI
PMID:17067568 GO_REF:0000024 MGI:3703483 NCBI chr10:93,060,798...93,069,540
Ensembl chr10:93,060,798...93,069,540
JBrowse link
G EMX2 empty spiracles homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578670|PMID:15917450)
(MGI:2386059|PMID:12196586)
Ensembl
MGI
PMID:12196586 PMID:15917450 GO_REF:0000107 MGI:2386059 MGI:3578670 NCBI chr10:117,542,746...117,549,546
Ensembl chr10:117,542,445...117,549,546
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr20:22,580,998...22,585,490
Ensembl chr20:22,581,005...22,585,455
Ensembl chr20:22,581,005...22,585,455
JBrowse link
G FOXH1 forkhead box H1 acts_upstream_of_or_within ISO (MGI:1934969|PMID:11358868) MGI PMID:11358868 MGI:1934969 NCBI chr 8:144,473,412...144,475,849
Ensembl chr 8:144,473,412...144,475,849
JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4367921|PMID:19877275) MGI PMID:19877275 MGI:4367921 NCBI chr19:49,806,866...49,817,376
Ensembl chr19:49,806,866...49,817,376
JBrowse link
G GDF11 growth differentiation factor 11 acts_upstream_of_or_within ISO (MGI:1339513|PMID:10391213)
(MGI:5509072|PMID:23918385)
MGI PMID:10391213 PMID:23918385 MGI:1339513 MGI:5509072 NCBI chr12:55,743,122...55,757,264
Ensembl chr12:55,743,122...55,757,264
JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5439039|PMID:22841643) Ensembl
MGI
PMID:22841643 GO_REF:0000107 MGI:5439039 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5439039|PMID:22841643)
(MGI:3053244|PMID:15315762)
Ensembl
MGI
InterPro
PMID:15315762 PMID:22841643 GO_REF:0000002 GO_REF:0000107 MGI:3053244 MGI:5439039 NCBI chr 7:41,960,949...42,237,209
Ensembl chr 7:41,960,949...42,237,870
Ensembl chr 7:41,960,949...42,237,870
JBrowse link
G GRSF1 G-rich RNA sequence binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578569|PMID:15857914) Ensembl
MGI
PMID:15857914 GO_REF:0000107 MGI:3578569 NCBI chr 4:70,815,783...70,843,274
Ensembl chr 4:70,815,783...70,839,897
JBrowse link
G HELT helt bHLH transcription factor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:185,018,490...185,021,265
Ensembl chr 4:185,018,841...185,020,804
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:194,136,148...194,138,732
Ensembl chr 3:194,136,148...194,138,732
JBrowse link
G HES2 hes family bHLH transcription factor 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:6,415,232...6,419,919
Ensembl chr 1:6,412,418...6,424,670
JBrowse link
G HES3 hes family bHLH transcription factor 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:6,244,179...6,245,578
Ensembl chr 1:6,244,179...6,245,578
JBrowse link
G HES4 hes family bHLH transcription factor 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:998,962...1,001,052
Ensembl chr 1:998,962...1,000,172
JBrowse link
G HES5 hes family bHLH transcription factor 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:2,528,745...2,530,554
Ensembl chr 1:2,528,745...2,530,263
JBrowse link
G HES6 hes family bHLH transcription factor 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:238,238,267...238,240,038
Ensembl chr 2:238,238,267...238,240,662
JBrowse link
G HES7 hes family bHLH transcription factor 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:8,120,590...8,126,032
Ensembl chr17:8,120,592...8,124,106
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:79,764,010...79,767,767
Ensembl chr 8:79,764,010...79,767,857
Ensembl chr 8:79,764,010...79,767,857
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:125,747,639...125,762,243
Ensembl chr 6:125,747,664...125,761,269
JBrowse link
G HEYL hes related family bHLH transcription factor with YRPW motif like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:39,623,435...39,639,643
Ensembl chr 1:39,623,435...39,639,643
JBrowse link
G HHEX hematopoietically expressed homeobox involved_in ISS UniProt GO_REF:0000024 NCBI chr10:92,689,955...92,695,647
Ensembl chr10:92,689,955...92,695,647
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3619785|PMID:16537918) Ensembl
MGI
PMID:16537918 GO_REF:0000107 MGI:3619785 NCBI chr 1:113,929,324...113,977,869
Ensembl chr 1:113,929,324...113,977,869
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3619785|PMID:16537918) Ensembl
MGI
PMID:16537918 GO_REF:0000107 MGI:3619785 NCBI chr 7:139,561,570...139,777,998
Ensembl chr 7:139,561,570...139,777,998
JBrowse link
G HNF1B HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3578600|PMID:15872003) MGI PMID:15872003 MGI:3578600 NCBI chr17:37,686,431...37,745,059
Ensembl chr17:37,686,431...37,745,105
JBrowse link
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (MGI:3055618|PMID:15367676)
(MGI:1346308|PMID:10529420)
MGI PMID:10529420 PMID:15367676 MGI:1346308 MGI:3055618 NCBI chr 7:27,092,993...27,096,000
Ensembl chr 7:27,093,313...27,095,996
Ensembl chr 7:27,093,313...27,095,996
JBrowse link
G HOXA10 homeobox A10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2667742|PMID:12869760) Ensembl
MGI
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr 7:27,170,605...27,179,861
Ensembl chr 7:27,170,592...27,180,261
JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2667742|PMID:12869760) Ensembl
MGI
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr 7:27,181,157...27,185,232
Ensembl chr 7:27,181,157...27,185,232
Ensembl chr 7:27,181,157...27,185,232
JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1098901|PMID:9367425) Ensembl
MGI
PMID:9367425 GO_REF:0000107 MGI:1098901 NCBI chr 7:27,100,354...27,102,683
Ensembl chr 7:27,100,354...27,102,686
JBrowse link
G HOXA3 homeobox A3 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:67616|PMID:7913519)
(MGI:1195045|PMID:9441667)
GO_Central
MGI
PMID:7913519 PMID:9441667 PMID:21873635 MGI:1195045 MGI:67616 NCBI chr 7:27,107,010...27,152,583
Ensembl chr 7:27,106,184...27,152,581
JBrowse link
G HOXA4 homeobox A4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:67413|PMID:7918106)
(MGI:74948|PMID:7628700)
GO_Central
MGI
PMID:7628700 PMID:7918106 PMID:21873635 MGI:67413 MGI:74948 NCBI chr 7:27,128,525...27,130,757
Ensembl chr 7:27,128,507...27,130,780
JBrowse link
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3723390|PMID:17417799)
(MGI:1203259|PMID:9603431), (MGI:63693|PMID:7901120)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:7901120 PMID:9603431 PMID:17417799 PMID:17626057 PMID:21873635 MGI:1203259 MGI:3720535 MGI:3723390 MGI:63693 NCBI chr 7:27,141,052...27,143,681
Ensembl chr 7:27,141,052...27,143,681
JBrowse link
G HOXA6 homeobox A6 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3720535|PMID:17626057)
(MGI:67413|PMID:7918106)
GO_Central
MGI
PMID:7918106 PMID:17626057 PMID:21873635 MGI:3720535 MGI:67413 NCBI chr 7:27,145,396...27,147,774
Ensembl chr 7:27,145,396...27,150,603
JBrowse link
G HOXA7 homeobox A7 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1313067|PMID:9784603)
GO_Central
MGI
PMID:9784603 PMID:21873635 MGI:1313067 NCBI chr 7:27,153,716...27,156,675
Ensembl chr 7:27,153,716...27,157,936
JBrowse link
G HOXA9 homeobox A9 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:85243|PMID:9013929)
(MGI:78984|PMID:8625797)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:8625797 PMID:9013929 PMID:17626057 PMID:21873635 MGI:3720535 MGI:78984 MGI:85243 NCBI chr 7:27,162,438...27,165,537
Ensembl chr 7:27,162,438...27,175,180
JBrowse link
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1859107|PMID:10885747)
(MGI:1346308|PMID:10529420)
Ensembl
MGI
PMID:10529420 PMID:10885747 GO_REF:0000107 MGI:1346308 MGI:1859107 NCBI chr17:48,528,526...48,531,011
Ensembl chr17:48,528,526...48,531,011
JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1859107|PMID:10885747)
(MGI:85074|PMID:9012503)
Ensembl
MGI
PMID:9012503 PMID:10885747 GO_REF:0000107 MGI:1859107 MGI:85074 NCBI chr17:48,542,655...48,545,109
Ensembl chr17:48,540,894...48,544,989
Ensembl chr17:48,540,894...48,544,989
JBrowse link
G HOXB3 homeobox B3 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1195045|PMID:9441667)
(MGI:1859107|PMID:10885747)
GO_Central
MGI
PMID:9441667 PMID:10885747 PMID:21873635 MGI:1195045 MGI:1859107 NCBI chr17:48,548,870...48,590,241
Ensembl chr17:48,548,870...48,604,912
JBrowse link
G HOXB4 homeobox B4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:85074|PMID:9012503)
(MGI:1859107|PMID:10885747)
(MGI:74948|PMID:7628700)
GO_Central
MGI
PMID:7628700 PMID:9012503 PMID:10885747 PMID:21873635 MGI:1859107 MGI:74948 MGI:85074 NCBI chr17:48,575,507...48,578,350
Ensembl chr17:48,575,507...48,578,350
JBrowse link
G HOXB5 homeobox B5 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1859107|PMID:10885747)
(MGI:70296|PMID:7828847)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:7828847 PMID:10885747 PMID:17626057 PMID:21873635 MGI:1859107 MGI:3720535 MGI:70296 NCBI chr17:48,591,257...48,593,779
Ensembl chr17:48,591,257...48,593,961
Ensembl chr17:48,591,257...48,593,961
JBrowse link
G HOXB6 homeobox B6 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:70296|PMID:7828847)
(MGI:1859107|PMID:10885747)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:7828847 PMID:10885747 PMID:17626057 PMID:21873635 MGI:1859107 MGI:3720535 MGI:70296 NCBI chr17:48,595,736...48,604,986
Ensembl chr17:48,595,751...48,604,992
JBrowse link
G HOXB7 homeobox B7 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1313067|PMID:9784603)
(MGI:1859107|PMID:10885747)
GO_Central
MGI
PMID:9784603 PMID:10885747 PMID:21873635 MGI:1313067 MGI:1859107 NCBI chr17:48,607,232...48,611,017
Ensembl chr17:48,607,232...48,633,572
JBrowse link
G HOXB8 homeobox B8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1349283|PMID:10559485), (MGI:1933164|PMID:11311170)
(MGI:1933164|PMID:11311170)
(MGI:1859107|PMID:10885747)
(MGI:2681074|PMID:14623233)
Ensembl
MGI
PMID:10559485 PMID:10885747 PMID:11311170 PMID:14623233 GO_REF:0000107 MGI:1349283 MGI:1859107 MGI:1933164 MGI:2681074 NCBI chr17:48,612,346...48,619,531
Ensembl chr17:48,611,377...48,615,292
JBrowse link
G HOXB9 homeobox B9 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3720535|PMID:17626057)
(MGI:85243|PMID:9013929)
(MGI:1859107|PMID:10885747)
GO_Central
MGI
PMID:9013929 PMID:10885747 PMID:17626057 PMID:21873635 MGI:1859107 MGI:3720535 MGI:85243 NCBI chr17:48,621,156...48,626,358
Ensembl chr17:48,621,156...48,626,358
JBrowse link
G HOXC10 homeobox C10 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr12:53,985,146...53,990,279
Ensembl chr12:53,985,065...53,990,279
JBrowse link
G HOXC11 homeobox C11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr12:53,973,126...53,977,643
Ensembl chr12:53,973,126...53,977,643
JBrowse link
G HOXC13 homeobox C13 acts_upstream_of_or_within ISO (MGI:1195385|PMID:9420327) MGI PMID:9420327 MGI:1195385 NCBI chr12:53,938,831...53,946,544
Ensembl chr12:53,938,831...53,946,544
JBrowse link
G HOXC4 homeobox C4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:79121|PMID:8626021)
(MGI:81673|PMID:8660891)
GO_Central
MGI
PMID:8626021 PMID:8660891 PMID:21873635 MGI:79121 MGI:81673 NCBI chr12:54,016,888...54,056,030
Ensembl chr12:54,016,931...54,056,030
JBrowse link
G HOXC5 homeobox C5 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:17626057 PMID:21873635 MGI:3720535 NCBI chr12:54,016,888...54,035,361
Ensembl chr12:54,017,110...54,035,361
Ensembl chr12:54,017,110...54,035,361
Ensembl chr12:54,017,110...54,035,361
JBrowse link
G HOXC6 homeobox C6 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3720535|PMID:17626057)
GO_Central
MGI
PMID:17626057 PMID:21873635 MGI:3720535 NCBI chr12:54,016,888...54,030,823
Ensembl chr12:53,990,624...54,030,823
JBrowse link
G HOXC8 homeobox C8 acts_upstream_of_or_within ISO (MGI:1933164|PMID:11311170) MGI PMID:11311170 MGI:1933164 NCBI chr12:54,008,985...54,012,769
Ensembl chr12:54,008,985...54,012,769
JBrowse link
G HOXC9 homeobox C9 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3720535|PMID:17626057)
(MGI:73980|PMID:7547473)
GO_Central
MGI
PMID:7547473 PMID:17626057 PMID:21873635 MGI:3720535 MGI:73980 NCBI chr12:54,000,161...54,003,337
Ensembl chr12:53,994,895...54,003,337
JBrowse link
G HOXD10 homeobox D10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1350864|PMID:10642795)
(MGI:2667742|PMID:12869760)
Ensembl
MGI
PMID:10642795 PMID:12869760 GO_REF:0000107 MGI:1350864 MGI:2667742 NCBI chr 2:176,116,778...176,119,937
Ensembl chr 2:176,108,790...176,119,942
Ensembl chr 2:176,108,790...176,119,942
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr 2:176,107,280...176,109,754
Ensembl chr 2:176,104,216...176,109,754
JBrowse link
G HOXD13 homeobox D13 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:63627|PMID:8106170) Ensembl
MGI
PMID:8106170 GO_REF:0000107 MGI:63627 NCBI chr 2:176,087,487...176,095,944
Ensembl chr 2:176,092,721...176,095,944
JBrowse link
G HOXD3 homeobox D3 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
(PMID:21873635)
(MGI:63793|PMID:7910549), (MGI:67616|PMID:7913519)
(MGI:1195045|PMID:9441667)
(MGI:67616|PMID:7913519)
GO_Central
MGI
UniProt
PMID:7910549 PMID:7913519 PMID:9441667 PMID:21873635 GO_REF:0000024 MGI:1195045 MGI:63793 MGI:67616 NCBI chr 2:176,157,307...176,173,102
Ensembl chr 2:176,136,612...176,173,102
JBrowse link
G HOXD4 homeobox D4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:74948|PMID:7628700)
(MGI:72992|PMID:7750651)
GO_Central
MGI
PMID:7628700 PMID:7750651 PMID:21873635 MGI:72992 MGI:74948 NCBI chr 2:176,150,394...176,156,078
Ensembl chr 2:176,151,550...176,153,226
JBrowse link
G HOXD8 homeobox D8 acts_upstream_of_or_within ISO (MGI:1933164|PMID:11311170) MGI PMID:11311170 MGI:1933164 NCBI chr 2:176,129,705...176,132,695
Ensembl chr 2:176,129,694...176,132,695
JBrowse link
G HOXD9 homeobox D9 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1350864|PMID:10642795)
(MGI:3720535|PMID:17626057)
(MGI:78984|PMID:8625797)
GO_Central
MGI
PMID:8625797 PMID:10642795 PMID:17626057 PMID:21873635 MGI:1350864 MGI:3720535 MGI:78984 NCBI chr 2:176,122,719...176,124,937
Ensembl chr 2:176,122,719...176,124,937
JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (MGI:3609520|PMID:16109169) MGI PMID:16109169 MGI:3609520 NCBI chr 4:3,074,681...3,243,960
Ensembl chr 4:3,041,422...3,243,960
Ensembl chr 4:3,041,422...3,243,960
JBrowse link
G IFITM1 interferon induced transmembrane protein 1 acts_upstream_of_or_within ISO (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 NCBI chr11:314,040...315,272
Ensembl chr11:313,506...315,272
Ensembl chr11:313,506...315,272
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:2660994|PMID:12701101)
(MGI:3579954|PMID:15930098)
MGI PMID:12701101 PMID:15930098 MGI:2660994 MGI:3579954 NCBI chr13:20,566,446...20,691,444
Ensembl chr13:20,567,069...20,691,437
Ensembl chr13:20,567,069...20,691,437
JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (MGI:1336552|PMID:10220415) MGI PMID:10220415 MGI:1336552 NCBI chr 5:132,688,808...132,737,563
Ensembl chr 5:132,692,628...132,737,638
JBrowse link
G KMT2A lysine methyltransferase 2A acts_upstream_of_or_within ISO (MGI:3625774|PMID:16618927)
(MGI:3530206|PMID:15741318)
MGI PMID:15741318 PMID:16618927 MGI:3530206 MGI:3625774 NCBI chr11:118,436,492...118,526,832
Ensembl chr11:118,436,490...118,526,832
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:1344734|PMID:10498685) UniProt
MGI
PMID:10498685 GO_REF:0000024 MGI:1344734 NCBI chr17:36,937,475...36,944,612
Ensembl chr17:36,936,785...36,944,612
JBrowse link
G LRP5 LDL receptor related protein 5 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3045836|PMID:15142971)
GO_Central
MGI
PMID:15142971 PMID:21873635 MGI:3045836 NCBI chr11:68,298,866...68,449,275
Ensembl chr11:68,312,591...68,449,275
JBrowse link
G LRP5L LDL receptor related protein 5 like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:25,351,418...25,405,410
Ensembl chr22:25,351,418...25,405,377
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3045836|PMID:15142971)
(MGI:4413372|PMID:19795512)
(MGI:3603992|PMID:16126904)
MGI PMID:15142971 PMID:16126904 PMID:19795512 MGI:3045836 MGI:3603992 MGI:4413372 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2387913|PMID:12242306) Ensembl
MGI
PMID:12242306 GO_REF:0000107 MGI:2387913 NCBI chr 9:20,341,669...20,622,499
Ensembl chr 9:20,341,669...20,622,499
Ensembl chr 9:20,341,669...20,622,499
JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4948979|PMID:21465616) Ensembl
MGI
PMID:21465616 GO_REF:0000107 MGI:4948979 NCBI chr 4:4,859,665...4,863,936
Ensembl chr 4:4,859,665...4,863,936
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr 5:174,724,582...174,730,896
Ensembl chr 5:174,724,582...174,730,896
JBrowse link
G NEUROD1 neuronal differentiation 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3613103|PMID:16368089) Ensembl
MGI
PMID:16368089 GO_REF:0000107 MGI:3613103 NCBI chr 2:181,668,295...181,680,517
Ensembl chr 2:181,673,088...181,680,547
Ensembl chr 2:181,673,088...181,680,547
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:3624254|PMID:16496285)
(MGI:2155575|PMID:11311163)
(MGI:3056019|PMID:15302604)
(MGI:2136068|PMID:11418863), (MGI:3042338|PMID:15004567)
MGI PMID:11311163 PMID:11418863 PMID:15004567 PMID:15302604 PMID:16496285 MGI:2136068 MGI:2155575 MGI:3042338 MGI:3056019 MGI:3624254 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951
JBrowse link
G NR2F2 nuclear receptor subfamily 2 group F member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578605|PMID:15829524) Ensembl
MGI
PMID:15829524 GO_REF:0000107 MGI:3578605 NCBI chr15:96,326,046...96,340,263
Ensembl chr15:96,325,938...96,340,263
JBrowse link
G OTX1 orthodenticle homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3039992|PMID:15105370) Ensembl
MGI
PMID:15105370 GO_REF:0000107 MGI:3039992 NCBI chr 2:63,049,735...63,057,831
Ensembl chr 2:63,050,057...63,057,836
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2136711|PMID:11412024)
(MGI:1197794|PMID:9501024)
(MGI:2656991|PMID:12652306)
MGI PMID:9501024 PMID:11412024 PMID:12652306 MGI:1197794 MGI:2136711 MGI:2656991 NCBI chr14:56,799,905...56,810,479
Ensembl chr14:56,799,905...56,816,693
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within ISO (MGI:3578670|PMID:15917450)
(MGI:2386059|PMID:12196586)
MGI PMID:12196586 PMID:15917450 MGI:2386059 MGI:3578670 NCBI chr11:31,789,026...31,817,961
Ensembl chr11:31,784,779...31,817,961
JBrowse link
G PBX1 PBX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2151355|PMID:11566859) Ensembl
MGI
PMID:11566859 GO_REF:0000107 MGI:2151355 NCBI chr 1:164,559,184...164,886,047
Ensembl chr 1:164,555,584...164,899,296
JBrowse link
G PCGF2 polycomb group ring finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:80640|PMID:8625838)
(MGI:3530206|PMID:15741318)
Ensembl
MGI
PMID:8625838 PMID:15741318 GO_REF:0000107 MGI:3530206 MGI:80640 NCBI chr17:38,733,898...38,749,817
Ensembl chr17:38,733,898...38,749,817
JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in IMP
IEA
(PMID:18519639) BHF-UCL
Ensembl
PMID:18519639 GO_REF:0000107 NCBI chr 9:75,890,646...76,362,975
Ensembl chr 9:75,890,644...76,362,975
Ensembl chr 9:75,890,644...76,362,975
JBrowse link
G PDS5A PDS5 cohesin associated factor A acts_upstream_of_or_within ISO (MGI:3847057|PMID:19412548) MGI PMID:19412548 MGI:3847057 NCBI chr 4:39,822,863...39,977,911
Ensembl chr 4:39,822,863...39,977,956
JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2154839|PMID:11784046)
(MGI:2154839|PMID:11784046), (MGI:60925|PMID:8388780)
Ensembl
MGI
PMID:8388780 PMID:11784046 GO_REF:0000107 MGI:2154839 MGI:60925 NCBI chr12:53,210,569...53,232,231
Ensembl chr12:53,210,567...53,232,980
JBrowse link
G RING1 ring finger protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3628673|PMID:16624538)
(MGI:1926247|PMID:11060235), (MGI:3628673|PMID:16624538)
Ensembl
MGI
PMID:11060235 PMID:16624538 GO_REF:0000107 MGI:1926247 MGI:3628673 NCBI chr 6:33,208,500...33,212,716
Ensembl chr 6:33,208,500...33,212,722
JBrowse link
G SCMH1 Scm polycomb group protein homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3703453|PMID:17215307) Ensembl
MGI
PMID:17215307 GO_REF:0000107 MGI:3703453 NCBI chr 1:41,027,199...41,242,306
Ensembl chr 1:41,027,200...41,242,154
JBrowse link
G SF3B1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (MGI:3530206|PMID:15741318) MGI PMID:15741318 MGI:3530206 NCBI chr 2:197,389,784...197,435,093
Ensembl chr 2:197,388,515...197,435,091
Ensembl chr 2:197,388,515...197,435,091
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:2135419|PMID:11389830)
(MGI:1928592|PMID:11118883)
MGI PMID:11118883 PMID:11389830 MGI:1928592 MGI:2135419 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:1201281|PMID:9529255), (MGI:2136068|PMID:11418863)
(MGI:2667288|PMID:12842913)
UniProt
MGI
PMID:9529255 PMID:11418863 PMID:12842913 GO_REF:0000024 MGI:1201281 MGI:2136068 MGI:2667288 NCBI chr18:47,808,957...47,931,188
Ensembl chr18:47,808,957...47,931,146
JBrowse link
G SMAD4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:3051711|PMID:15215210) MGI PMID:15215210 MGI:3051711 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,394...51,085,045
JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5438143|PMID:22987639) Ensembl
MGI
PMID:22987639 GO_REF:0000107 MGI:5438143 NCBI chr 7:129,188,633...129,213,548
Ensembl chr 7:129,188,633...129,213,545
JBrowse link
G TBX1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3039048|PMID:15084464)
(MGI:3614586|PMID:16399080)
UniProt
MGI
PMID:15084464 PMID:16399080 GO_REF:0000024 MGI:3039048 MGI:3614586 NCBI chr22:19,756,703...19,783,593
Ensembl chr22:19,756,703...19,783,593
JBrowse link
G TBXT T-box transcription factor T acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700
JBrowse link
G TCF15 transcription factor 15 acts_upstream_of_or_within ISO (MGI:84545|PMID:8955271) MGI PMID:8955271 MGI:84545 NCBI chr20:604,257...610,309
Ensembl chr20:603,797...610,398
JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:46,574,535...46,582,457
Ensembl chr 3:46,574,534...46,582,457
JBrowse link
G TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:110,520,312...110,523,021
Ensembl chr  X:110,520,312...110,523,021
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3695190|PMID:16845371) BHF-UCL
MGI
PMID:16845371 GO_REF:0000024 MGI:3695190 NCBI chr 9:99,104,038...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G TSHZ1 teashirt zinc finger homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3720547|PMID:17586487) Ensembl
MGI
PMID:17586487 GO_REF:0000107 MGI:3720547 NCBI chr18:75,210,797...75,289,946
Ensembl chr18:75,210,755...75,289,950
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3844764|PMID:19334287) Ensembl
MGI
PMID:19334287 GO_REF:0000107 MGI:3844764 NCBI chr12:2,890,891...2,941,138
Ensembl chr12:2,877,223...2,941,138
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3835694|PMID:18849982) MGI PMID:18849982 MGI:3835694 NCBI chr 1:160,400,564...160,428,674
Ensembl chr 1:160,400,564...160,428,670
JBrowse link
G WNT3 Wnt family member 3 acts_upstream_of_or_within ISO (MGI:1341483|PMID:10431240) MGI PMID:10431240 MGI:1341483 NCBI chr17:46,762,506...46,818,692
Ensembl chr17:46,762,506...46,833,154
JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (MGI:3044441|PMID:15148409) MGI PMID:15148409 MGI:3044441 NCBI chr 1:228,006,998...228,067,113
Ensembl chr 1:228,006,998...228,061,271
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3039991|PMID:15073149), (MGI:4413372|PMID:19795512) MGI PMID:15073149 PMID:19795512 MGI:3039991 MGI:4413372 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
G YY1 YY1 transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3628673|PMID:16624538) Ensembl
MGI
PMID:16624538 GO_REF:0000107 MGI:3628673 NCBI chr14:100,239,144...100,282,788
Ensembl chr14:100,238,298...100,282,788
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1859075|PMID:10835630) Ensembl
MGI
PMID:10835630 GO_REF:0000107 MGI:1859075 NCBI chr11:114,059,576...114,256,770
Ensembl chr11:114,059,711...114,256,765
JBrowse link
G ZIC3 Zic family member 3 acts_upstream_of_or_within ISO (MGI:3624254|PMID:16496285) MGI PMID:16496285 MGI:3624254 NCBI chr  X:137,566,127...137,577,691
Ensembl chr  X:137,566,127...137,577,691
JBrowse link
anterior compartment pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PBX3 PBX homeobox 3 involved_in TAS (PMID:1682799) PINC PMID:1682799 NCBI chr 9:125,747,372...125,967,377
Ensembl chr 9:125,747,345...125,967,377
JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AURKA aurora kinase A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5449118|PMID:22939930) Ensembl
MGI
PMID:22939930 GO_REF:0000107 MGI:5449118 NCBI chr20:56,369,390...56,392,308
Ensembl chr20:56,369,389...56,392,337
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1889107|PMID:10964473) Ensembl
MGI
PMID:10964473 GO_REF:0000107 MGI:1889107 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G CDX1 caudal type homeobox 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:150,166,778...150,184,558
Ensembl chr 5:150,166,778...150,184,558
JBrowse link
G CDX2 caudal type homeobox 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:27,960,918...27,969,337
Ensembl chr13:27,960,918...27,969,315
JBrowse link
G CDX4 caudal type homeobox 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:73,447,053...73,455,171
Ensembl chr  X:73,447,254...73,455,245
JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:10049596)
(MGI:3776330|PMID:18241853)
(MGI:3042338|PMID:15004567)
BHF-UCL
MGI
PMID:10049596 PMID:15004567 PMID:18241853 MGI:3042338 MGI:3776330 NCBI chr 9:14,715,082...14,724,308
Ensembl chr 9:14,719,724...14,722,733
JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1353237|PMID:10662781) Ensembl
MGI
PMID:10662781 GO_REF:0000107 MGI:1353237 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G DDIT3 DNA damage inducible transcript 3 involved_in ISS (PMID:16434966) BHF-UCL PMID:16434966 NCBI chr12:57,516,588...57,520,517
Ensembl chr12:57,516,588...57,521,737
JBrowse link
G GPC3 glypican 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1889107|PMID:10964473) Ensembl
MGI
PMID:10964473 GO_REF:0000107 MGI:1889107 NCBI chr  X:133,535,745...133,985,616
Ensembl chr  X:133,535,745...133,985,594
Ensembl chr  X:133,535,745...133,985,594
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (MGI:3530185|PMID:15680351) MGI PMID:15680351 MGI:3530185 NCBI chr 8:79,764,010...79,767,767
Ensembl chr 8:79,764,010...79,767,857
Ensembl chr 8:79,764,010...79,767,857
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3530185|PMID:15680351) Ensembl
MGI
PMID:15680351 GO_REF:0000107 MGI:3530185 NCBI chr 6:125,747,639...125,762,243
Ensembl chr 6:125,747,664...125,761,269
JBrowse link
G LDB1 LIM domain binding 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2448170|PMID:12490556) Ensembl
MGI
PMID:12490556 GO_REF:0000107 MGI:2448170 NCBI chr10:102,102,100...102,120,368
Ensembl chr10:102,106,489...102,120,368
Ensembl chr10:102,106,489...102,120,368
JBrowse link
G LEFTY1 left-right determination factor 1 acts_upstream_of_or_within ISO (MGI:3042338|PMID:15004567) MGI PMID:15004567 MGI:3042338 NCBI chr 1:225,886,282...225,889,146
Ensembl chr 1:225,886,282...225,911,382
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:1346311|PMID:10529425) UniProt
MGI
PMID:10529425 GO_REF:0000024 MGI:1346311 NCBI chr17:36,937,475...36,944,612
Ensembl chr17:36,936,785...36,944,612
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951
JBrowse link
G PGAP1 post-GPI attachment to proteins inositol deacylase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1346311|PMID:10529425) Ensembl
MGI
PMID:10529425 GO_REF:0000107 MGI:1346311 NCBI chr 2:196,833,004...196,926,995
Ensembl chr 2:196,833,004...196,927,796
JBrowse link
G RNF2 ring finger protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2389282|PMID:12183370) Ensembl
MGI
PMID:12183370 GO_REF:0000107 MGI:2389282 NCBI chr 1:185,045,430...185,102,603
Ensembl chr 1:185,045,526...185,102,603
JBrowse link
G SIX2 SIX homeobox 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:45,005,182...45,009,645
Ensembl chr 2:45,005,182...45,009,452
JBrowse link
G SKI SKI proto-oncogene involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:2176418|PMID:11731796) BHF-UCL
MGI
PMID:11731796 GO_REF:0000024 MGI:2176418 NCBI chr 1:2,228,319...2,310,213
Ensembl chr 1:2,228,319...2,310,213
JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (MGI:3044041|PMID:15155583) MGI PMID:15155583 MGI:3044041 NCBI chr 6:84,666,810...84,764,598
Ensembl chr 6:84,687,351...84,764,598
JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO (MGI:3776330|PMID:18241853) MGI PMID:18241853 MGI:3776330 NCBI chr 3:46,574,535...46,582,457
Ensembl chr 3:46,574,534...46,582,457
JBrowse link
G WLS Wnt ligand secretion mediator involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:68,098,459...68,233,018
Ensembl chr 1:68,098,473...68,233,120
JBrowse link
G WNT3 Wnt family member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3771246|PMID:18028899) Ensembl
MGI
PMID:18028899 GO_REF:0000107 MGI:3771246 NCBI chr17:46,762,506...46,818,692
Ensembl chr17:46,762,506...46,833,154
JBrowse link
G WNT8A Wnt family member 8A involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 5:138,077,367...138,092,900
Ensembl chr 5:138,083,990...138,092,365
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3580203|PMID:15870281) Ensembl
MGI
PMID:15870281 GO_REF:0000107 MGI:3580203 NCBI chr12:69,470,371...69,579,793
Ensembl chr12:69,470,349...69,579,789
Ensembl chr12:69,470,349...69,579,789
JBrowse link
G FZD5 frizzled class receptor 5 involved_in IDA (PMID:9054360) BHF-UCL PMID:9054360 NCBI chr 2:207,753,889...207,769,906
Ensembl chr 2:207,762,598...207,769,906
JBrowse link
G HOXD8 homeobox D8 involved_in NAS (PMID:2568311) UniProt PMID:2568311 NCBI chr 2:176,129,705...176,132,695
Ensembl chr 2:176,129,694...176,132,695
JBrowse link
G TASOR transcription activation suppressor involved_in ISS UniProt GO_REF:0000024 NCBI chr 3:56,620,132...56,683,265
Ensembl chr 3:56,620,133...56,683,237
JBrowse link
G TBX3 T-box transcription factor 3 involved_in IMP (PMID:9207801) UniProt PMID:9207801 NCBI chr12:114,670,255...114,684,175
Ensembl chr12:114,670,255...114,684,175
JBrowse link
G TBXT T-box transcription factor T involved_in TAS (PMID:8963900) PINC PMID:8963900 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700
JBrowse link
G TCF7L1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:3043490 NCBI chr 2:85,133,392...85,310,387
Ensembl chr 2:85,133,392...85,310,387
JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:1303194|PMID:9790191) UniProt
MGI
PMID:9790191 GO_REF:0000024 MGI:1303194 NCBI chr 3:46,574,535...46,582,457
Ensembl chr 3:46,574,534...46,582,457
JBrowse link
G WNT5A Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1891551|PMID:11029008)
GO_Central
MGI
PMID:11029008 PMID:21873635 MGI:1891551 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4839483|PMID:20630950) Ensembl
MGI
PMID:20630950 GO_REF:0000107 MGI:4839483 NCBI chr  X:71,118,596...71,142,450
Ensembl chr  X:71,118,556...71,142,454
JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1891551|PMID:11029008) Ensembl
MGI
PMID:11029008 GO_REF:0000107 MGI:1891551 NCBI chr 1:228,006,998...228,067,113
Ensembl chr 1:228,006,998...228,061,271
JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2181244|PMID:12001066) Ensembl
MGI
PMID:12001066 GO_REF:0000107 MGI:2181244 NCBI chr 6:170,282,200...170,291,078
Ensembl chr 6:170,282,206...170,306,565
JBrowse link
G DLL3 delta like canonical Notch ligand 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2181244|PMID:12001066) Ensembl
MGI
PMID:12001066 GO_REF:0000107 MGI:2181244 NCBI chr19:39,498,947...39,508,469
Ensembl chr19:39,498,895...39,508,481
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chr 7:2,512,529...2,529,177
Ensembl chr 7:2,512,529...2,529,177
JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2181244|PMID:12001066) Ensembl
MGI
PMID:12001066 GO_REF:0000107 MGI:2181244 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3793375|PMID:18257070) Ensembl
MGI
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3611958|PMID:16314491) UniProt
MGI
PMID:16314491 GO_REF:0000024 MGI:3611958 NCBI chr20:6,767,686...6,780,246
Ensembl chr20:6,767,686...6,780,246
JBrowse link
G FOXH1 forkhead box H1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3055632|PMID:15363409) Ensembl
MGI
PMID:15363409 GO_REF:0000107 MGI:3055632 NCBI chr 8:144,473,412...144,475,849
Ensembl chr 8:144,473,412...144,475,849
JBrowse link
G GATA4 GATA binding protein 4 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:87488|PMID:9136932) BHF-UCL
MGI
PMID:9136932 GO_REF:0000024 MGI:87488 NCBI chr 8:11,676,931...11,760,002
Ensembl chr 8:11,676,959...11,760,002
JBrowse link
epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2677178|PMID:14511481) Ensembl
MGI
PMID:14511481 GO_REF:0000107 MGI:2677178 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951
JBrowse link
fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOG noggin involved_in IMP (PMID:8582276) BHF-UCL PMID:8582276 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FEZF1 FEZ family zinc finger 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702790|PMID:16971467) Ensembl
MGI
PMID:16971467 GO_REF:0000107 MGI:3702790 NCBI chr 7:122,300,939...122,311,855
Ensembl chr 7:122,301,303...122,310,691
JBrowse link
G FEZF2 FEZ family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702790|PMID:16971467) Ensembl
MGI
PMID:16971467 GO_REF:0000107 MGI:3702790 NCBI chr 3:62,369,681...62,373,550
Ensembl chr 3:62,369,681...62,374,324
JBrowse link
G SIX3 SIX homeobox 3 acts_upstream_of_or_within ISO (MGI:3772426|PMID:18094027) MGI PMID:18094027 MGI:3772426 NCBI chr 2:44,941,702...44,946,071
Ensembl chr 2:44,941,702...44,946,071
JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3772426|PMID:18094027) Ensembl
MGI
PMID:18094027 GO_REF:0000107 MGI:3772426 NCBI chr12:48,978,322...48,982,620
Ensembl chr12:48,978,322...48,982,620
JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:892757|PMID:9169845) Ensembl
MGI
PMID:9169845 GO_REF:0000107 MGI:892757 NCBI chr11:31,789,026...31,817,961
Ensembl chr11:31,784,779...31,817,961
JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4361775|PMID:19805295)
(MGI:4360856|PMID:19686689)
Ensembl
MGI
PMID:19686689 PMID:19805295 GO_REF:0000107 MGI:4360856 MGI:4361775 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G WNT2 Wnt family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4360856|PMID:19686689) Ensembl
MGI
PMID:19686689 GO_REF:0000107 MGI:4360856 NCBI chr 7:117,275,451...117,323,058
Ensembl chr 7:117,275,451...117,323,152
JBrowse link
G WNT2B Wnt family member 2B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4360856|PMID:19686689) Ensembl
MGI
PMID:19686689 GO_REF:0000107 MGI:4360856 NCBI chr 1:112,466,541...112,530,165
Ensembl chr 1:112,466,541...112,530,165
JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EN1 engrailed homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3525936|PMID:15607945) Ensembl
MGI
PMID:15607945 GO_REF:0000107 MGI:3525936 NCBI chr 2:118,842,171...118,847,648
Ensembl chr 2:118,842,171...118,847,648
Ensembl chr 2:118,842,171...118,847,648
JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3720541|PMID:17601531) Ensembl
MGI
PMID:17601531 GO_REF:0000107 MGI:3720541 NCBI chr10:101,770,109...101,780,369
Ensembl chr10:101,770,130...101,780,369
JBrowse link
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (MGI:3624192|PMID:16651541) MGI PMID:16651541 MGI:3624192 NCBI chr 2:236,165,236...236,168,386
Ensembl chr 2:236,165,236...236,168,386
JBrowse link
G LRP6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1891551|PMID:11029008), (MGI:4413372|PMID:19795512)
GO_Central
MGI
PMID:11029008 PMID:19795512 PMID:21873635 MGI:1891551 MGI:4413372 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G WNT1 Wnt family member 1 acts_upstream_of_or_within ISO (MGI:59176|PMID:2205396) MGI PMID:2205396 MGI:59176 NCBI chr12:48,978,322...48,982,620
Ensembl chr12:48,978,322...48,982,620
JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SSBP3 single stranded DNA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:54,225,432...54,413,479
Ensembl chr 1:54,225,432...54,413,479
Ensembl chr 1:54,225,432...54,413,479
JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:76584|PMID:8555108) Ensembl
MGI
PMID:8555108 GO_REF:0000107 MGI:76584 NCBI chr12:48,978,322...48,982,620
Ensembl chr12:48,978,322...48,982,620
JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GBX2 gastrulation brain homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624192|PMID:16651541) Ensembl
MGI
PMID:16651541 GO_REF:0000107 MGI:3624192 NCBI chr 2:236,165,236...236,168,386
Ensembl chr 2:236,165,236...236,168,386
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2149154|PMID:11500373) Ensembl
MGI
PMID:11500373 GO_REF:0000107 MGI:2149154 NCBI chr 3:194,136,148...194,138,732
Ensembl chr 3:194,136,148...194,138,732
JBrowse link
G HES3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (MGI:2149134|PMID:11522634) MGI PMID:11522634 MGI:2149134 NCBI chr 1:6,244,179...6,245,578
Ensembl chr 1:6,244,179...6,245,578
JBrowse link
G KDM2B lysine demethylase 2B involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr12:121,402,288...121,582,268
Ensembl chr12:121,429,096...121,581,023
JBrowse link
negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TBX18 T-box transcription factor 18 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 6:84,666,810...84,764,598
Ensembl chr 6:84,687,351...84,764,598
JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FUZ fuzzy planar cell polarity protein involved_in ISS UniProt GO_REF:0000024 NCBI chr19:49,806,866...49,817,376
Ensembl chr19:49,806,866...49,817,376
JBrowse link
G OFD1 OFD1 centriole and centriolar satellite protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr  X:13,734,726...13,773,978
Ensembl chr  X:13,734,745...13,769,357
JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISS UniProt GO_REF:0000024 NCBI chr 7:2,512,529...2,529,177
Ensembl chr 7:2,512,529...2,529,177
JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5317364|PMID:21795391) Ensembl
MGI
PMID:21795391 GO_REF:0000107 MGI:5317364 NCBI chr 9:137,299,631...137,302,271
Ensembl chr 9:137,299,631...137,302,271
JBrowse link
neural plate anterior/posterior regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELSR2 cadherin EGF LAG seven-pass G-type receptor 2 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 1:109,249,539...109,275,751
Ensembl chr 1:109,249,539...109,275,751
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLD6 phospholipase D family member 6 involved_in ISS UniProt GO_REF:0000024 NCBI chr17:17,200,990...17,206,905
Ensembl chr17:17,200,995...17,206,333
JBrowse link
G TDRD5 tudor domain containing 5 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:179,591,613...179,691,272
Ensembl chr 1:179,591,613...179,691,272
JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule involved_in ISS UniProt GO_REF:0000024 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
G WNT8A Wnt family member 8A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3609071|PMID:16256739) Ensembl
MGI
PMID:16256739 GO_REF:0000107 MGI:3609071 NCBI chr 5:138,077,367...138,092,900
Ensembl chr 5:138,083,990...138,092,365
JBrowse link
pole plasm assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WDR77 WD repeat domain 77 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:111,439,890...111,449,256
Ensembl chr 1:111,439,890...111,449,256
JBrowse link
posterior compartment specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PBX3 PBX homeobox 3 involved_in TAS (PMID:1682799) PINC PMID:1682799 NCBI chr 9:125,747,372...125,967,377
Ensembl chr 9:125,747,345...125,967,377
JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ETS2 ETS proto-oncogene 2, transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5546318|PMID:23552073) Ensembl
MGI
PMID:23552073 GO_REF:0000107 MGI:5546318 NCBI chr21:38,805,183...38,824,955
Ensembl chr21:38,805,183...38,824,955
JBrowse link
G FOXA2 forkhead box A2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:2157654|PMID:11291865) UniProt
MGI
PMID:11291865 GO_REF:0000024 MGI:2157654 NCBI chr20:22,580,998...22,585,490
Ensembl chr20:22,581,005...22,585,455
Ensembl chr20:22,581,005...22,585,455
JBrowse link
G GDF3 growth differentiation factor 3 acts_upstream_of_or_within ISO (MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:3611720 NCBI chr12:7,689,784...7,695,775
Ensembl chr12:7,689,784...7,695,775
JBrowse link
G HHEX hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:4950786|PMID:21445260) MGI PMID:21445260 MGI:4950786 NCBI chr10:92,689,955...92,695,647
Ensembl chr10:92,689,955...92,695,647
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:2157654|PMID:11291865) UniProt
MGI
PMID:11291865 GO_REF:0000024 MGI:2157654 NCBI chr17:36,937,475...36,944,612
Ensembl chr17:36,936,785...36,944,612
JBrowse link
G LRP6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:4413372|PMID:19795512)
GO_Central
MGI
PMID:19795512 PMID:21873635 MGI:4413372 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:4950786|PMID:21445260) MGI PMID:21445260 MGI:4950786 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951
JBrowse link
G OTX2 orthodenticle homeobox 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:2157654|PMID:11291865) UniProt
MGI
PMID:11291865 GO_REF:0000024 MGI:2157654 NCBI chr14:56,799,905...56,810,479
Ensembl chr14:56,799,905...56,816,693
JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1312998|PMID:9799237) Ensembl
MGI
PMID:9799237 GO_REF:0000107 MGI:1312998 NCBI chr 6:43,171,269...43,181,506
Ensembl chr 6:43,171,269...43,181,506
JBrowse link
G TBXT T-box transcription factor T involved_in NAS (PMID:18593560) BHF-UCL PMID:18593560 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4413372|PMID:19795512) Ensembl
MGI
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKD1 NKD inhibitor of WNT signaling pathway 1 involved_in ISS (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr16:50,548,396...50,649,249
Ensembl chr16:50,548,396...50,649,249
JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in IGI (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:135,965,673...136,149,615
Ensembl chr 3:135,965,728...136,147,894
JBrowse link
regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOG noggin involved_in IMP (PMID:8582276) BHF-UCL PMID:8582276 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDX1 caudal type homeobox 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:150,166,778...150,184,558
Ensembl chr 5:150,166,778...150,184,558
JBrowse link
G CDX2 caudal type homeobox 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr13:27,960,918...27,969,337
Ensembl chr13:27,960,918...27,969,315
JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 6:170,282,200...170,291,078
Ensembl chr 6:170,282,206...170,306,565
JBrowse link
G DMRT2 doublesex and mab-3 related transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3820487|PMID:17974128) Ensembl
MGI
PMID:17974128 GO_REF:0000107 MGI:3820487 NCBI chr 9:1,003,237...1,057,554
Ensembl chr 9:1,049,858...1,057,552
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
IMP
ISO
(PMID:19061953)
(MGI:4367298|PMID:19779553)
UniProt
MGI
PMID:19061953 PMID:19779553 MGI:4367298 NCBI chr 7:2,512,529...2,529,177
Ensembl chr 7:2,512,529...2,529,177
JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:72973|PMID:7789282) Ensembl
MGI
PMID:7789282 GO_REF:0000107 MGI:72973 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chr 2:222,199,887...222,298,998
Ensembl chr 2:222,199,888...222,298,996
Ensembl chr 2:222,199,888...222,298,996
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578715|PMID:15889094) Ensembl
MGI
PMID:15889094 GO_REF:0000107 MGI:3578715 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IMP (PMID:20093472) UniProt PMID:20093472 NCBI chr  X:40,580,970...40,606,848
Ensembl chr  X:40,579,372...40,606,848
JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:82985|PMID:8887324) MGI
Ensembl
PMID:8887324 GO_REF:0000107 MGI:82985 NCBI chr10:22,321,099...22,331,484
Ensembl chr10:22,321,099...22,331,484
JBrowse link
G COMMD3-BMI1 COMMD3-BMI1 readthrough involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:22,316,388...22,331,484
Ensembl chr10:22,316,388...22,329,542
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4421275|PMID:19913509) Ensembl
MGI
PMID:19913509 GO_REF:0000107 MGI:4421275 NCBI chr 8:54,457,935...54,460,892
Ensembl chr 8:54,457,935...54,460,892
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3821807|PMID:18794329) Ensembl
MGI
PMID:18794329 GO_REF:0000107 MGI:3821807 NCBI chr 2:120,013,032...120,179,119
Ensembl chr 2:120,013,077...120,179,119
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr20:22,580,998...22,585,490
Ensembl chr20:22,581,005...22,585,455
Ensembl chr20:22,581,005...22,585,455
JBrowse link
G GDF3 growth differentiation factor 3 acts_upstream_of_or_within ISO (MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:3611720 NCBI chr12:7,689,784...7,695,775
Ensembl chr12:7,689,784...7,695,775
JBrowse link
G KDM6A lysine demethylase 6A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5448135|PMID:22949634) Ensembl
MGI
PMID:22949634 GO_REF:0000107 MGI:5448135 NCBI chr  X:44,873,182...45,112,779
Ensembl chr  X:44,873,188...45,112,779
Ensembl chr  X:44,873,188...45,112,779
Ensembl chr  X:44,873,188...45,112,779
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2157654|PMID:11291865) Ensembl
MGI
PMID:11291865 GO_REF:0000107 MGI:2157654 NCBI chr17:36,937,475...36,944,612
Ensembl chr17:36,936,785...36,944,612
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:89,734,772...89,751,309
Ensembl chr15:89,748,661...89,751,310
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:4459001|PMID:20346937)
GO_Central
MGI
PMID:20346937 PMID:21873635 MGI:4459001 NCBI chr15:89,776,332...89,778,754
Ensembl chr15:89,760,591...89,778,754
JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5438472|PMID:21998026) Ensembl
MGI
PMID:21998026 GO_REF:0000107 MGI:5438472 NCBI chr 9:137,299,631...137,302,271
Ensembl chr 9:137,299,631...137,302,271
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr14:56,799,905...56,810,479
Ensembl chr14:56,799,905...56,816,693
JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:4459001|PMID:20346937) UniProt
MGI
PMID:20346937 GO_REF:0000024 MGI:4459001 NCBI chr  X:106,900,063...106,903,341
Ensembl chr  X:106,900,063...106,903,341
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:4459001|PMID:20346937) UniProt
MGI
PMID:20346937 GO_REF:0000024 MGI:4459001 NCBI chr 6:83,853,266...83,857,515
Ensembl chr 6:83,853,266...83,857,515
JBrowse link
G SMAD4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1195384|PMID:9420335) Ensembl
MGI
PMID:9420335 GO_REF:0000107 MGI:1195384 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,394...51,085,045
JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4459001|PMID:20346937) Ensembl
MGI
PMID:20346937 GO_REF:0000107 MGI:4459001 NCBI chr16:30,085,793...30,091,927
Ensembl chr16:30,085,793...30,091,924
Ensembl chr16:30,085,793...30,091,924
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4453264|PMID:20178780) Ensembl
MGI
PMID:20178780 GO_REF:0000107 MGI:4453264 NCBI chr12:123,584,552...123,598,582
Ensembl chr12:123,584,533...123,598,582
JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COBL cordon-bleu WH2 repeat protein involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:7586755) BHF-UCL
BHF-UCL
PMID:7586755 GO_REF:0000024 NCBI chr 7:51,016,212...51,316,809
Ensembl chr 7:51,016,212...51,316,818
JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3034157|PMID:14960495) Ensembl
MGI
PMID:14960495 GO_REF:0000107 MGI:3034157 NCBI chr 6:170,282,200...170,291,078
Ensembl chr 6:170,282,206...170,306,565
JBrowse link
G MEOX1 mesenchyme homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2669571|PMID:12925591) Ensembl
MGI
PMID:12925591 GO_REF:0000107 MGI:2669571 NCBI chr17:43,640,389...43,661,977
Ensembl chr17:43,640,389...43,661,922
JBrowse link
G MEOX2 mesenchyme homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2669571|PMID:12925591) Ensembl
MGI
PMID:12925591 GO_REF:0000107 MGI:2669571 NCBI chr 7:15,611,212...15,686,683
Ensembl chr 7:15,611,212...15,686,683
JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr  X:106,900,063...106,903,341
Ensembl chr  X:106,900,063...106,903,341
JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI1 abl interactor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3577662|PMID:15755804) MGI
Ensembl
PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr10:26,746,596...26,860,986
Ensembl chr10:26,746,593...26,861,087
JBrowse link
G ATM ATM serine/threonine kinase acts_upstream_of_or_within ISO (MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:3624894 NCBI chr11:108,222,484...108,369,102
Ensembl chr11:108,222,832...108,369,102
Ensembl chr11:108,222,832...108,369,102
JBrowse link
G AXIN2 axin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3037351|PMID:12636920) Ensembl
MGI
PMID:12636920 GO_REF:0000107 MGI:3037351 NCBI chr17:65,528,563...65,561,648
Ensembl chr17:65,528,563...65,561,648
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702797|PMID:16943278) Ensembl
MGI
PMID:16943278 GO_REF:0000107 MGI:3702797 NCBI chr10:86,755,786...86,927,969
Ensembl chr10:86,756,601...86,932,838
Ensembl chr10:86,756,601...86,932,838
JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:123,354,065...123,380,326
Ensembl chr 9:123,356,170...123,380,324
JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3578712|PMID:15902259) UniProt
MGI
PMID:15902259 GO_REF:0000024 MGI:3578712 NCBI chr 6:170,282,200...170,291,078
Ensembl chr 6:170,282,206...170,306,565
JBrowse link
G DLL3 delta like canonical Notch ligand 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1095777|PMID:9272948)
(MGI:3620337|PMID:15170697)
Ensembl
MGI
PMID:9272948 PMID:15170697 GO_REF:0000107 MGI:1095777 MGI:3620337 NCBI chr19:39,498,947...39,508,469
Ensembl chr19:39,498,895...39,508,481
JBrowse link
G EP300 E1A binding protein p300 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3583034|PMID:15937931) Ensembl
MGI
PMID:15937931 GO_REF:0000107 MGI:3583034 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,592...41,180,077
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chr 2:120,013,032...120,179,119
Ensembl chr 2:120,013,077...120,179,119
JBrowse link
G FOXB1 forkhead box B1 involved_in ISS UniProt GO_REF:0000024 NCBI chr15:60,004,311...60,007,444
Ensembl chr15:60,004,234...60,061,730
JBrowse link
G FOXC1 forkhead box C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:1,609,915...1,613,897
Ensembl chr 6:1,609,915...1,613,897
JBrowse link
G FOXC2 forkhead box C2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:86,566,829...86,569,728
Ensembl chr16:86,566,829...86,569,728
JBrowse link
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928688|PMID:11124112) Ensembl
MGI
PMID:11124112 GO_REF:0000107 MGI:1928688 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422
JBrowse link
G HES7 hes family bHLH transcription factor 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3046002|PMID:15170214)
(MGI:2152470|PMID:11641270), (MGI:4367298|PMID:19779553)
Ensembl
MGI
PMID:11641270 PMID:15170214 PMID:19779553 GO_REF:0000107 MGI:2152470 MGI:3046002 MGI:4367298 NCBI chr17:8,120,590...8,126,032
Ensembl chr17:8,120,592...8,124,106
JBrowse link
G IFITM1 interferon induced transmembrane protein 1 acts_upstream_of_or_within ISO (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 NCBI chr11:314,040...315,272
Ensembl chr11:313,506...315,272
Ensembl chr11:313,506...315,272
JBrowse link
G KAT2A lysine acetyltransferase 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709911|PMID:17325035)
(MGI:3583034|PMID:15937931)
Ensembl
MGI
PMID:15937931 PMID:17325035 GO_REF:0000107 MGI:3583034 MGI:3709911 NCBI chr17:42,113,111...42,121,367
Ensembl chr17:42,113,111...42,121,367
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3510574|PMID:15545629)
(MGI:1334099|PMID:10090727)
Ensembl
MGI
PMID:10090727 PMID:15545629 GO_REF:0000107 MGI:1334099 MGI:3510574 NCBI chr 4:108,047,548...108,168,932
Ensembl chr 4:108,047,545...108,168,956
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3774705|PMID:18234727) UniProt
MGI
PMID:18234727 GO_REF:0000024 MGI:3774705 NCBI chr 7:2,512,529...2,529,177
Ensembl chr 7:2,512,529...2,529,177
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G MED12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:4839544 NCBI chr  X:71,118,596...71,142,450
Ensembl chr  X:71,118,556...71,142,454
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:3578712 NCBI chr15:89,776,332...89,778,754
Ensembl chr15:89,760,591...89,778,754
JBrowse link
G MIB1 MIB E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3603078|PMID:16000382) Ensembl
MGI
PMID:16000382 GO_REF:0000107 MGI:3603078 NCBI chr18:21,740,792...21,870,953
Ensembl chr18:21,704,957...21,870,957
Ensembl chr18:21,704,957...21,870,957
JBrowse link
G MSGN1 mesogenin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928575|PMID:11124811), (MGI:5545970|PMID:21750544) Ensembl
MGI
PMID:11124811 PMID:21750544 GO_REF:0000107 MGI:1928575 MGI:5545970 NCBI chr 2:17,816,460...17,817,798
Ensembl chr 2:17,816,460...17,817,798
JBrowse link
G MYF5 myogenic factor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1861090|PMID:10929709)
(MGI:3849775|PMID:19531352)
(MGI:78390|PMID:8565825)
Ensembl
MGI
PMID:8565825 PMID:10929709 PMID:19531352 GO_REF:0000107 MGI:1861090 MGI:3849775 MGI:78390 NCBI chr12:80,716,912...80,719,671
Ensembl chr12:80,716,912...80,719,671
JBrowse link
G MYF6 myogenic factor 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:76810|PMID:7588068) Ensembl
MGI
PMID:7588068 GO_REF:0000107 MGI:76810 NCBI chr12:80,707,634...80,709,474
Ensembl chr12:80,707,634...80,709,474
JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr 2:182,909,115...183,038,457
Ensembl chr 2:182,909,115...183,038,858
JBrowse link
G NKX3-1 NK3 homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9621431) Ensembl
BHF-UCL
PMID:9621431 GO_REF:0000107 NCBI chr 8:23,678,693...23,682,938
Ensembl chr 8:23,678,697...23,682,938
JBrowse link
G NLE1 notchless homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5608942|PMID:24875805) Ensembl
MGI
PMID:24875805 GO_REF:0000107 MGI:5608942 NCBI chr17:35,128,730...35,142,304
Ensembl chr17:35,128,730...35,142,304
JBrowse link
G PALB2 partner and localizer of BRCA2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4459579|PMID:20484223) Ensembl
MGI
PMID:20484223 GO_REF:0000107 MGI:4459579 NCBI chr16:23,603,162...23,641,337
Ensembl chr16:23,603,160...23,641,310
JBrowse link
G PAX1 paired box 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3590033|PMID:16093716) Ensembl
MGI
PMID:16093716 GO_REF:0000107 MGI:3590033 NCBI chr20:21,705,664...21,718,481
Ensembl chr20:21,705,659...21,718,486
JBrowse link
G PCDH8 protocadherin 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2451199|PMID:12591245) Ensembl
MGI
PMID:12591245 GO_REF:0000107 MGI:2451199 NCBI chr13:52,842,889...52,848,640
Ensembl chr13:52,842,889...52,848,641
JBrowse link
G PLXNA2 plexin A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19666519) Ensembl
BHF-UCL
PMID:19666519 GO_REF:0000107 NCBI chr 1:208,022,242...208,244,384
Ensembl chr 1:208,022,242...208,244,384
JBrowse link
G POFUT1 protein O-fucosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2660984|PMID:12697902) Ensembl
MGI
PMID:12697902 GO_REF:0000107 MGI:2660984 NCBI chr20:32,207,880...32,238,658
Ensembl chr20:32,207,880...32,238,658
JBrowse link
G POGLUT1 protein O-glucosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1267118|PMID:9636176) Ensembl
MGI
PMID:9636176 GO_REF:0000107 MGI:1267118 NCBI chr 3:119,468,955...119,494,708
Ensembl chr 3:119,468,963...119,494,708
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624894|PMID:16687486) Ensembl
MGI
PMID:16687486 GO_REF:0000107 MGI:3624894 NCBI chr 8:47,773,111...47,960,136
Ensembl chr 8:47,773,111...47,960,178
Ensembl chr 8:47,773,111...47,960,178
JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553)
(MGI:87649|PMID:9153393)
Ensembl
MGI
PMID:9153393 PMID:10557208 PMID:19779553 GO_REF:0000107 MGI:1347695 MGI:4367298 MGI:87649 NCBI chr14:73,136,436...73,223,691
Ensembl chr14:73,136,418...73,223,691
JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553) MGI PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 NCBI chr 1:226,870,594...226,903,829
Ensembl chr 1:226,870,184...226,896,105
Ensembl chr 1:226,870,184...226,896,105
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4367298|PMID:19779553) Ensembl
MGI
PMID:19779553 GO_REF:0000107 MGI:4367298 NCBI chr 4:26,163,458...26,435,131
Ensembl chr 4:26,163,455...26,435,131
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3715395|PMID:17531978) UniProt
MGI
PMID:17531978 GO_REF:0000024 MGI:3715395 NCBI chr 6:83,853,266...83,857,515
Ensembl chr 6:83,853,266...83,857,515
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3037488|PMID:14745966) Ensembl
MGI
PMID:14745966 GO_REF:0000107 MGI:3037488 NCBI chr 9:91,722,598...91,950,228
Ensembl chr 9:91,563,091...91,950,228
JBrowse link
G SEMA3C semaphorin 3C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19666519) Ensembl
BHF-UCL
PMID:19666519 GO_REF:0000107 NCBI chr 7:80,742,538...80,922,389
Ensembl chr 7:80,742,538...80,922,359
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:10654605)
(MGI:3618960|PMID:16467359)
BHF-UCL
MGI
PMID:10654605 PMID:16467359 MGI:3618960 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083
JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618021|PMID:15183723) Ensembl
MGI
PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr15:67,065,602...67,195,195
Ensembl chr15:67,063,763...67,195,169
Ensembl chr15:67,063,763...67,195,169
JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within
involved_in
ISS
IBA
(PMID:21873635) ARUK-UCL
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 6:84,666,810...84,764,598
Ensembl chr 6:84,687,351...84,764,598
JBrowse link
G TBX19 T-box transcription factor 19 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:168,280,877...168,314,426
Ensembl chr 1:168,280,877...168,314,426
JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:3701028|PMID:16835439)
(MGI:3056222|PMID:15384171)
(MGI:64493|PMID:8293872)
GO_Central
MGI
Ensembl
PMID:8293872 PMID:15384171 PMID:16835439 PMID:21873635 GO_REF:0000107 MGI:3056222 MGI:3701028 MGI:64493 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700
JBrowse link
G TCAP titin-cap involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9817758) Ensembl
BHF-UCL
PMID:9817758 GO_REF:0000107 NCBI chr17:39,665,349...39,666,554
Ensembl chr17:39,665,349...39,666,554
Ensembl chr17:39,665,349...39,666,554
JBrowse link
G TCF15 transcription factor 15 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:84545|PMID:8955271) Ensembl
MGI
PMID:8955271 GO_REF:0000107 MGI:84545 NCBI chr20:604,257...610,309
Ensembl chr20:603,797...610,398
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr12:123,584,552...123,598,582
Ensembl chr12:123,584,533...123,598,582
JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709913|PMID:17320900) Ensembl
MGI
PMID:17320900 GO_REF:0000107 MGI:3709913 NCBI chr17:7,668,421...7,687,490
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G TTN titin acts_upstream_of_or_within ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr 2:178,525,989...178,807,423
Ensembl chr 2:178,525,989...178,830,802
JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (MGI:3611726|PMID:16291790), (MGI:64780|PMID:8299937)
(MGI:3037351|PMID:12636920)
MGI PMID:8299937 PMID:12636920 PMID:16291790 MGI:3037351 MGI:3611726 MGI:64780 NCBI chr 1:228,006,998...228,067,113
Ensembl chr 1:228,006,998...228,061,271
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4413372|PMID:19795512) Ensembl
MGI
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
G XRCC2 X-ray repair cross complementing 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3708426|PMID:17116431) Ensembl
MGI
PMID:17116431 GO_REF:0000107 MGI:3708426 NCBI chr 7:152,644,776...152,676,141
Ensembl chr 7:152,644,776...152,676,141
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (MGI:3590396|PMID:16157277), (MGI:3624924|PMID:16598713) MGI PMID:16157277 PMID:16598713 MGI:3590396 MGI:3624924 NCBI chr 2:144,384,081...144,520,119
Ensembl chr 2:144,364,364...144,521,057
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:19,351,485...19,358,623
Ensembl chr 2:19,351,485...19,358,623
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:19,351,485...19,358,623
Ensembl chr 2:19,351,485...19,358,623
JBrowse link
specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IDA (PMID:10706139), (PMID:17118062) UniProt PMID:10706139 PMID:17118062 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDF11 growth differentiation factor 11 acts_upstream_of_or_within ISO (MGI:3701017|PMID:16790475) MGI PMID:16790475 MGI:3701017 NCBI chr12:55,743,122...55,757,264
Ensembl chr12:55,743,122...55,757,264
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BASP1 brain abundant membrane attached signal protein 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:17,216,823...17,276,834
Ensembl chr 5:17,065,598...17,276,843
JBrowse link
G DCANP1 dendritic cell associated nuclear protein involved_in IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,444,214...135,447,348
Ensembl chr 5:135,444,214...135,447,348
JBrowse link
G NEUROG1 neurogenin 1 involved_in IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,534,282...135,535,964
Ensembl chr 5:135,534,282...135,535,964
JBrowse link
G TIFAB TIFA inhibitor involved_in IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,444,226...135,452,351
Ensembl chr 5:135,444,226...135,452,351
JBrowse link
G WT1 WT1 transcription factor involved_in ISS UniProt GO_REF:0000024 NCBI chr11:32,387,775...32,435,539
Ensembl chr11:32,387,775...32,435,564
Ensembl chr11:32,387,775...32,435,564
JBrowse link
transforming growth factor beta receptor signaling pathway involved in primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2677178|PMID:14511481) Ensembl
MGI
PMID:14511481 GO_REF:0000107 MGI:2677178 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr10:52,314,281...52,317,657
Ensembl chr10:52,314,281...52,318,042
JBrowse link
G LRP6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3055483|PMID:15469977)
GO_Central
MGI
PMID:15469977 PMID:21873635 MGI:3055483 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in IC (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:135,965,673...136,149,615
Ensembl chr 3:135,965,728...136,147,894
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3793375|PMID:18257070) Ensembl
MGI
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3793375|PMID:18257070) Ensembl
MGI
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083
JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO RGD PMID:25281935 RGD:12832757 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr 2:182,909,115...183,038,457
Ensembl chr 2:182,909,115...183,038,858
JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1858546|PMID:10809672) Ensembl
MGI
PMID:10809672 GO_REF:0000107 MGI:1858546 NCBI chr15:101,303,933...101,489,707
Ensembl chr15:101,297,142...101,525,202
Ensembl chr15:101,297,142...101,525,202
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18670
    multicellular organismal process 8814
      pattern specification process 513
        regionalization 396
          anterior/posterior pattern specification 243
            anterior region determination 0
            anterior/posterior axis specification + 60
            anterior/posterior pattern specification involved in kidney development + 2
            anterior/posterior pattern specification, imaginal disc + 0
            compartment pattern specification + 5
            embryonic heart tube anterior/posterior pattern specification + 3
            forebrain anterior/posterior pattern specification 4
            foregut regionalization + 3
            neural plate anterior/posterior regionalization + 6
            periodic partitioning by pair rule gene 0
            posterior abdomen determination + 0
            rostrocaudal neural tube patterning + 15
            somitogenesis + 78
            spinal cord anterior/posterior patterning + 1
            thorax and anterior abdomen determination + 5
Path 2
Term Annotations click to browse term
  biological_process 18670
    developmental process 7480
      anatomical structure development 6902
        multicellular organism development 6384
          pattern specification process 513
            regionalization 396
              anterior/posterior pattern specification 243
                anterior region determination 0
                anterior/posterior axis specification + 60
                anterior/posterior pattern specification involved in kidney development + 2
                anterior/posterior pattern specification, imaginal disc + 0
                compartment pattern specification + 5
                embryonic heart tube anterior/posterior pattern specification + 3
                forebrain anterior/posterior pattern specification 4
                foregut regionalization + 3
                neural plate anterior/posterior regionalization + 6
                periodic partitioning by pair rule gene 0
                posterior abdomen determination + 0
                rostrocaudal neural tube patterning + 15
                somitogenesis + 78
                spinal cord anterior/posterior patterning + 1
                thorax and anterior abdomen determination + 5
paths to the root