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ONTOLOGY REPORT - ANNOTATIONS


Term:anterior/posterior pattern specification
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Accession:GO:0009952 term browser browse the term
Definition:The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
Synonyms:related_synonym: anterior/posterior pattern formation


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anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2A activin A receptor type 2A acts_upstream_of_or_within ISO (MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118) MGI PMID:10452853 PMID:16991118 MGI:1344152 MGI:3689276 NCBI chr2B:11,933,683...12,020,287
Ensembl chr2B:152,253,826...152,288,385
JBrowse link
G ACVR2B activin A receptor type 2B involved_in
acts_upstream_of_or_within
ISO (PMID:9916847)
(MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118)
(MGI:3689276|PMID:16991118), (MGI:3695190|PMID:16845371), (MGI:894948|PMID:9242489)
(MGI:3525050|PMID:15542835)
(MGI:3695190|PMID:16845371)
HGNC-UCL
MGI
PMID:9242489 PMID:9916847 PMID:10452853 PMID:15542835 PMID:16845371 PMID:16991118 MGI:1344152 MGI:3525050 MGI:3689276 MGI:3695190 MGI:894948 NCBI chr 3:38,350,838...38,389,839
Ensembl chr 3:38,633,093...38,662,063
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (MGI:3612223|PMID:16368932)
(MGI:3703483|PMID:17067568)
(MGI:3530707|PMID:15652703), (MGI:3578600|PMID:15872003)
MGI PMID:15652703 PMID:15872003 PMID:16368932 PMID:17067568 MGI:3530707 MGI:3578600 MGI:3612223 MGI:3703483 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G ALX1 ALX homeobox 1 acts_upstream_of_or_within ISO (MGI:1314705|PMID:9847249) MGI PMID:9847249 MGI:1314705 NCBI chr12:82,800,273...82,822,031
Ensembl chr12:85,902,113...85,923,774
JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (MGI:1314705|PMID:9847249)
(MGI:1098911|PMID:9374397), (MGI:1314705|PMID:9847249)
MGI PMID:9374397 PMID:9847249 MGI:1098911 MGI:1314705 NCBI chr11:44,219,865...44,269,597 JBrowse link
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (MGI:2449253|PMID:12645927) MGI PMID:12645927 MGI:2449253 NCBI chr 5:108,070,697...108,208,273
Ensembl chr 5:113,904,352...114,009,709
JBrowse link
G ARC activity regulated cytoskeleton associated protein acts_upstream_of_or_within ISO (MGI:1355000|PMID:10727859) MGI PMID:10727859 MGI:1355000 NCBI chr 8:139,320,366...139,323,802
Ensembl chr 8:142,367,995...142,369,185
JBrowse link
G BARX1 BARX homeobox 1 acts_upstream_of_or_within ISO (MGI:3766872|PMID:17855428) MGI PMID:17855428 MGI:3766872 NCBI chr 9:65,071,990...65,151,152 JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within ISO (MGI:3525050|PMID:15542835)
(MGI:1855789|PMID:10772805)
MGI PMID:10772805 PMID:15542835 MGI:1855789 MGI:3525050 NCBI chr2B:89,631,622...89,823,438
Ensembl chr2B:207,780,741...207,961,072
JBrowse link
G BPTF bromodomain PHD finger transcription factor acts_upstream_of_or_within ISO (MGI:3821803|PMID:18794365)
(MGI:3840601|PMID:18974875)
MGI PMID:18794365 PMID:18974875 MGI:3821803 MGI:3840601 NCBI chr17:61,759,241...61,917,343
Ensembl chr17:66,956,594...67,109,428
JBrowse link
G BTG2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (MGI:3525050|PMID:15542835) MGI PMID:15542835 MGI:3525050 NCBI chr 1:178,907,317...178,911,410
Ensembl chr 1:183,201,297...183,205,404
JBrowse link
G CDON cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (MGI:4422144|PMID:19754878) MGI PMID:19754878 MGI:4422144 NCBI chr11:120,772,160...120,877,529
Ensembl chr11:124,685,084...124,786,091
JBrowse link
G CDX1 caudal type homeobox 1 acts_upstream_of_or_within ISO (MGI:2154839|PMID:11784046)
(MGI:2154839|PMID:11784046), (MGI:77274|PMID:7585967)
MGI PMID:7585967 PMID:11784046 MGI:2154839 MGI:77274 NCBI chr 5:145,591,186...145,608,976
Ensembl chr 5:151,592,139...151,614,257
JBrowse link
G CDX2 caudal type homeobox 2 acts_upstream_of_or_within ISO (MGI:4398801|PMID:19853565) MGI PMID:19853565 MGI:4398801 NCBI chr13:9,241,856...9,250,297
Ensembl chr13:27,586,340...27,593,632
JBrowse link
G CDX4 caudal type homeobox 4 acts_upstream_of_or_within ISO (MGI:4398801|PMID:19853565) MGI PMID:19853565 MGI:4398801 NCBI chr  X:62,674,244...62,681,944
Ensembl chr  X:72,796,634...72,804,717
JBrowse link
G CELSR1 cadherin EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO (MGI:4429791|PMID:19357712)
(MGI:3835694|PMID:18849982)
MGI PMID:18849982 PMID:19357712 MGI:3835694 MGI:4429791 Ensembl chr22:45,428,159...45,604,453 JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (MGI:1197794|PMID:9501024) MGI PMID:9501024 MGI:1197794 NCBI chr 9:14,552,062...14,559,632
Ensembl chr 9:15,063,766...15,066,776
JBrowse link
G CFC1B cripto, FRL-1, cryptic family 1B acts_upstream_of_or_within ISO (MGI:2136711|PMID:11412024) MGI PMID:11412024 MGI:2136711 NCBI chr2B:29,354,004...29,362,161 JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO (MGI:3614586|PMID:16399080) MGI PMID:16399080 MGI:3614586 NCBI chr22:3,141,147...3,177,448
Ensembl chr22:19,632,359...19,668,858
JBrowse link
G CTNNBIP1 catenin beta interacting protein 1 acts_upstream_of_or_within ISO (MGI:3044441|PMID:15148409) MGI PMID:15148409 MGI:3044441 NCBI chr 1:8,615,241...8,677,324
Ensembl chr 1:9,846,511...9,882,049
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 acts_upstream_of_or_within ISO (MGI:3703483|PMID:17067568) MGI PMID:17067568 MGI:3703483 NCBI chr10:89,817,623...89,822,024
Ensembl chr10:93,330,460...93,334,105
JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 acts_upstream_of_or_within ISO (MGI:3703483|PMID:17067568) MGI PMID:17067568 MGI:3703483 NCBI chr10:89,804,830...89,813,687
Ensembl chr10:93,317,798...93,325,315
JBrowse link
G EMX2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO (MGI:2386059|PMID:12196586)
(MGI:3578670|PMID:15917450)
MGI PMID:12196586 PMID:15917450 MGI:2386059 MGI:3578670 NCBI chr10:114,124,759...114,132,109
Ensembl chr10:117,551,451...117,557,972
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr20:22,519,942...22,524,262 JBrowse link
G FOXH1 forkhead box H1 acts_upstream_of_or_within ISO (MGI:1934969|PMID:11358868) MGI PMID:11358868 MGI:1934969 NCBI chr 8:141,240,691...141,244,381
Ensembl chr 8:144,225,933...144,232,736
JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4367921|PMID:19877275) MGI PMID:19877275 MGI:4367921 NCBI chr19:46,819,833...46,826,235
Ensembl chr19:55,736,325...55,742,589
JBrowse link
G GDF11 growth differentiation factor 11 acts_upstream_of_or_within ISO (MGI:1339513|PMID:10391213)
(MGI:5509072|PMID:23918385)
MGI PMID:10391213 PMID:23918385 MGI:1339513 MGI:5509072 NCBI chr12:33,154,530...33,168,427
Ensembl chr12:33,879,180...33,893,252
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:5439039|PMID:22841643) MGI PMID:22841643 MGI:5439039 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:3053244|PMID:15315762)
(MGI:5439039|PMID:22841643)
MGI PMID:15315762 PMID:22841643 MGI:3053244 MGI:5439039 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G GRSF1 G-rich RNA sequence binding factor 1 acts_upstream_of_or_within ISO (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 NCBI chr 4:53,384,303...53,404,706 JBrowse link
G HHEX hematopoietically expressed homeobox involved_in ISO (MGI:3777521|PMID:16936074) UniProt PMID:16936074 MGI:3777521 NCBI chr10:89,433,402...89,439,137
Ensembl chr10:92,947,373...92,952,992
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 acts_upstream_of_or_within ISO (MGI:3619785|PMID:16537918) MGI PMID:16537918 MGI:3619785 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 acts_upstream_of_or_within ISO (MGI:3619785|PMID:16537918) MGI PMID:16537918 MGI:3619785 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G HNF1B HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3578600|PMID:15872003) MGI PMID:15872003 MGI:3578600 NCBI chr17:19,333,485...19,392,147
Ensembl chr17:19,633,424...19,691,863
JBrowse link
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (MGI:3055618|PMID:15367676)
(MGI:1346308|PMID:10529420)
MGI PMID:10529420 PMID:15367676 MGI:1346308 MGI:3055618 NCBI chr 7:27,737,432...27,740,442
Ensembl chr 7:27,335,710...27,339,747
JBrowse link
G HOXA10 homeobox A10 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr 7:27,815,112...27,818,829
Ensembl chr 7:27,415,833...27,423,580
JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr 7:27,826,003...27,829,757
Ensembl chr 7:27,424,759...27,429,103
JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within ISO (MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:1098901 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789
JBrowse link
G HOXA3 homeobox A3 acts_upstream_of_or_within ISO (MGI:67616|PMID:7913519)
(MGI:1195045|PMID:9441667)
MGI PMID:7913519 PMID:9441667 MGI:1195045 MGI:67616 NCBI chr 7:27,750,642...27,767,125
Ensembl chr 7:27,350,491...27,371,169
JBrowse link
G HOXA4 homeobox A4 acts_upstream_of_or_within ISO (MGI:74948|PMID:7628700)
(MGI:67413|PMID:7918106)
MGI PMID:7628700 PMID:7918106 MGI:67413 MGI:74948 NCBI chr 7:27,773,001...27,775,284 JBrowse link
G HOXA5 homeobox A5 acts_upstream_of_or_within ISO (MGI:3723390|PMID:17417799)
(MGI:1203259|PMID:9603431), (MGI:63693|PMID:7901120)
(MGI:3720535|PMID:17626057)
MGI PMID:7901120 PMID:9603431 PMID:17417799 PMID:17626057 MGI:1203259 MGI:3720535 MGI:3723390 MGI:63693 NCBI chr 7:27,786,040...27,789,339
Ensembl chr 7:27,385,175...27,388,990
JBrowse link
G HOXA6 homeobox A6 acts_upstream_of_or_within ISO (MGI:67413|PMID:7918106)
(MGI:3720535|PMID:17626057)
MGI PMID:7918106 PMID:17626057 MGI:3720535 MGI:67413 NCBI chr 7:27,790,031...27,792,348
Ensembl chr 7:27,389,679...27,391,997
JBrowse link
G HOXA7 homeobox A7 acts_upstream_of_or_within ISO (MGI:1313067|PMID:9784603) MGI PMID:9784603 MGI:1313067 NCBI chr 7:27,799,317...27,802,492
Ensembl chr 7:27,396,898...27,402,142
JBrowse link
G HOXA9 homeobox A9 acts_upstream_of_or_within ISO (MGI:78984|PMID:8625797)
(MGI:3720535|PMID:17626057)
(MGI:85243|PMID:9013929)
MGI PMID:8625797 PMID:9013929 PMID:17626057 MGI:3720535 MGI:78984 MGI:85243 NCBI chr 7:27,806,942...27,810,304
Ensembl chr 7:27,405,931...27,409,984
JBrowse link
G HOXB1 homeobox B1 acts_upstream_of_or_within ISO (MGI:1859107|PMID:10885747)
(MGI:1346308|PMID:10529420)
MGI PMID:10529420 PMID:10885747 MGI:1346308 MGI:1859107 NCBI chr17:9,005,745...9,008,230
Ensembl chr17:9,190,137...9,191,696
JBrowse link
G HOXB2 homeobox B2 acts_upstream_of_or_within ISO (MGI:85074|PMID:9012503)
(MGI:1859107|PMID:10885747)
MGI PMID:9012503 PMID:10885747 MGI:1859107 MGI:85074 NCBI chr17:8,991,652...8,994,092
Ensembl chr17:9,176,313...9,178,713
JBrowse link
G HOXB3 homeobox B3 acts_upstream_of_or_within ISO (MGI:1859107|PMID:10885747)
(MGI:1195045|PMID:9441667)
MGI PMID:9441667 PMID:10885747 MGI:1195045 MGI:1859107 NCBI chr17:8,946,441...8,987,876
Ensembl chr17:9,147,784...9,171,021
JBrowse link
G HOXB4 homeobox B4 acts_upstream_of_or_within ISO (MGI:74948|PMID:7628700)
(MGI:1859107|PMID:10885747)
(MGI:85074|PMID:9012503)
MGI PMID:7628700 PMID:9012503 PMID:10885747 MGI:1859107 MGI:74948 MGI:85074 NCBI chr17:8,958,253...8,961,261
Ensembl chr17:9,143,173...9,146,161
JBrowse link
G HOXB5 homeobox B5 acts_upstream_of_or_within ISO (MGI:1859107|PMID:10885747)
(MGI:3720535|PMID:17626057)
(MGI:70296|PMID:7828847)
MGI PMID:7828847 PMID:10885747 PMID:17626057 MGI:1859107 MGI:3720535 MGI:70296 NCBI chr17:8,941,990...8,945,512
Ensembl chr17:9,127,630...9,130,616
JBrowse link
G HOXB6 homeobox B6 acts_upstream_of_or_within ISO (MGI:1859107|PMID:10885747)
(MGI:3720535|PMID:17626057)
(MGI:70296|PMID:7828847)
MGI PMID:7828847 PMID:10885747 PMID:17626057 MGI:1859107 MGI:3720535 MGI:70296 NCBI chr17:8,931,773...8,941,024
Ensembl chr17:9,116,886...9,126,150
JBrowse link
G HOXB7 homeobox B7 acts_upstream_of_or_within ISO (MGI:1313067|PMID:9784603)
(MGI:1859107|PMID:10885747)
MGI PMID:9784603 PMID:10885747 MGI:1313067 MGI:1859107 NCBI chr17:8,925,717...8,929,523
Ensembl chr17:9,110,864...9,114,639
JBrowse link
G HOXB8 homeobox B8 acts_upstream_of_or_within ISO (MGI:1933164|PMID:11311170)
(MGI:1349283|PMID:10559485), (MGI:1933164|PMID:11311170)
(MGI:2681074|PMID:14623233)
(MGI:1859107|PMID:10885747)
MGI PMID:10559485 PMID:10885747 PMID:11311170 PMID:14623233 MGI:1349283 MGI:1859107 MGI:1933164 MGI:2681074 NCBI chr17:8,920,986...8,924,649
Ensembl chr17:9,106,662...9,109,540
JBrowse link
G HOXB9 homeobox B9 acts_upstream_of_or_within ISO (MGI:85243|PMID:9013929)
(MGI:1859107|PMID:10885747)
(MGI:3720535|PMID:17626057)
MGI PMID:9013929 PMID:10885747 PMID:17626057 MGI:1859107 MGI:3720535 MGI:85243 NCBI chr17:8,910,421...8,916,128
Ensembl chr17:9,095,438...9,100,747
JBrowse link
G HOXC10 homeobox C10 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr12:34,764,956...34,770,088
Ensembl chr12:35,553,262...35,558,393
JBrowse link
G HOXC11 homeobox C11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr12:34,777,790...34,782,104
Ensembl chr12:35,567,093...35,570,396
JBrowse link
G HOXC13 homeobox C13 acts_upstream_of_or_within ISO (MGI:1195385|PMID:9420327) MGI PMID:9420327 MGI:1195385 NCBI chr12:34,808,575...34,816,324
Ensembl chr12:35,596,821...35,604,560
JBrowse link
G HOXC4 homeobox C4 acts_upstream_of_or_within ISO (MGI:79121|PMID:8626021)
(MGI:81673|PMID:8660891)
MGI PMID:8626021 PMID:8660891 MGI:79121 MGI:81673 NCBI chr12:34,699,357...34,702,368
Ensembl chr12:35,487,619...35,526,627
JBrowse link
G HOXC5 homeobox C5 acts_upstream_of_or_within ISO (MGI:3720535|PMID:17626057) MGI PMID:17626057 MGI:3720535 NCBI chr12:34,720,006...34,722,202
Ensembl chr12:35,508,711...35,510,388
JBrowse link
G HOXC6 homeobox C6 acts_upstream_of_or_within ISO (MGI:3720535|PMID:17626057) MGI PMID:17626057 MGI:3720535 NCBI chr12:34,724,503...34,739,436
Ensembl chr12:35,512,686...35,526,627
JBrowse link
G HOXC8 homeobox C8 acts_upstream_of_or_within ISO (MGI:1933164|PMID:11311170) MGI PMID:11311170 MGI:1933164 NCBI chr12:34,742,674...34,746,451
Ensembl chr12:35,531,200...35,534,420
JBrowse link
G HOXC9 homeobox C9 acts_upstream_of_or_within ISO (MGI:73980|PMID:7547473)
(MGI:3720535|PMID:17626057)
MGI PMID:7547473 PMID:17626057 MGI:3720535 MGI:73980 NCBI chr12:34,751,922...34,755,157
Ensembl chr12:35,540,234...35,543,486
JBrowse link
G HOXD10 homeobox D10 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760)
(MGI:1350864|PMID:10642795)
MGI PMID:10642795 PMID:12869760 MGI:1350864 MGI:2667742 NCBI chr2B:63,395,636...63,399,704
Ensembl chr2B:181,104,876...181,110,963
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr2B:63,386,806...63,398,777 JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (MGI:63627|PMID:8106170) MGI PMID:8106170 MGI:63627 NCBI chr2B:63,372,517...63,375,731 JBrowse link
G HOXD3 homeobox D3 acts_upstream_of_or_within ISO (MGI:63793|PMID:7910549), (MGI:67616|PMID:7913519)
(MGI:67616|PMID:7913519)
(MGI:1195045|PMID:9441667)
MGI PMID:7910549 PMID:7913519 PMID:9441667 MGI:1195045 MGI:63793 MGI:67616 NCBI chr2B:63,432,720...63,452,816
Ensembl chr2B:181,141,538...181,161,604
JBrowse link
G HOXD4 homeobox D4 acts_upstream_of_or_within ISO (MGI:72992|PMID:7750651)
(MGI:74948|PMID:7628700)
MGI PMID:7628700 PMID:7750651 MGI:72992 MGI:74948 NCBI chr2B:63,429,084...63,432,972 JBrowse link
G HOXD8 homeobox D8 acts_upstream_of_or_within ISO (MGI:1933164|PMID:11311170) MGI PMID:11311170 MGI:1933164 NCBI chr2B:63,409,223...63,412,146 JBrowse link
G HOXD9 homeobox D9 acts_upstream_of_or_within ISO (MGI:1350864|PMID:10642795)
(MGI:78984|PMID:8625797)
(MGI:3720535|PMID:17626057)
MGI PMID:8625797 PMID:10642795 PMID:17626057 MGI:1350864 MGI:3720535 MGI:78984 NCBI chr2B:63,401,813...63,404,731
Ensembl chr2B:181,112,002...181,113,415
JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (MGI:3609520|PMID:16109169) MGI PMID:16109169 MGI:3609520 NCBI chr 4:3,215,081...3,388,587
Ensembl chr 4:3,128,718...3,283,730
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:3579954|PMID:15930098)
(MGI:2660994|PMID:12701101)
MGI PMID:12701101 PMID:15930098 MGI:2660994 MGI:3579954 NCBI chr13:1,893,102...2,017,771
Ensembl chr13:20,206,471...20,331,204
JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (MGI:1336552|PMID:10220415) MGI PMID:10220415 MGI:1336552 NCBI chr 5:128,112,636...128,154,443
Ensembl chr 5:134,274,352...134,315,431
JBrowse link
G KMT2A lysine methyltransferase 2A acts_upstream_of_or_within ISO (MGI:3625774|PMID:16618927)
(MGI:3530206|PMID:15741318)
MGI PMID:15741318 PMID:16618927 MGI:3530206 MGI:3625774 NCBI chr11:113,273,198...113,364,404 JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G LOC100970132 interferon-induced transmembrane protein 1 acts_upstream_of_or_within ISO (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 Ensembl chr11:353,236...354,986 JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (MGI:3045836|PMID:15142971) MGI PMID:15142971 MGI:3045836 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512)
(MGI:3603992|PMID:16126904)
(MGI:3045836|PMID:15142971)
MGI PMID:15142971 PMID:16126904 PMID:19795512 MGI:3045836 MGI:3603992 MGI:4413372 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit acts_upstream_of_or_within ISO (MGI:2387913|PMID:12242306) MGI PMID:12242306 MGI:2387913 NCBI chr 9:20,140,160...20,417,327
Ensembl chr 9:20,800,393...21,073,046
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 Ensembl chr 4:4,935,600...4,939,079 JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr 5:170,063,137...170,070,226
Ensembl chr 5:176,967,902...176,976,609
JBrowse link
G NEUROD1 neuronal differentiation 1 acts_upstream_of_or_within ISO (MGI:3613103|PMID:16368089) MGI PMID:16368089 MGI:3613103 NCBI chr2B:68,939,341...68,943,516 JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2136068|PMID:11418863), (MGI:3042338|PMID:15004567)
(MGI:3056019|PMID:15302604)
(MGI:2155575|PMID:11311163)
(MGI:3624254|PMID:16496285)
MGI PMID:11311163 PMID:11418863 PMID:15004567 PMID:15302604 PMID:16496285 MGI:2136068 MGI:2155575 MGI:3042338 MGI:3056019 MGI:3624254 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972
JBrowse link
G NR2F2 nuclear receptor subfamily 2 group F member 2 acts_upstream_of_or_within ISO (MGI:3578605|PMID:15829524) MGI PMID:15829524 MGI:3578605 NCBI chr15:75,008,879...75,021,981 JBrowse link
G OTX1 orthodenticle homeobox 1 acts_upstream_of_or_within ISO (MGI:3039992|PMID:15105370) MGI PMID:15105370 MGI:3039992 NCBI chr2A:63,125,700...63,133,702
Ensembl chr2A:64,255,217...64,262,221
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2136711|PMID:11412024)
(MGI:2656991|PMID:12652306)
(MGI:1197794|PMID:9501024)
MGI PMID:9501024 PMID:11412024 PMID:12652306 MGI:1197794 MGI:2136711 MGI:2656991 NCBI chr14:37,370,926...37,381,610
Ensembl chr14:55,641,349...55,651,012
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within ISO (MGI:3578670|PMID:15917450)
(MGI:2386059|PMID:12196586)
MGI PMID:12196586 PMID:15917450 MGI:2386059 MGI:3578670 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474
JBrowse link
G PBX1 PBX homeobox 1 acts_upstream_of_or_within ISO (MGI:2151355|PMID:11566859) MGI PMID:11566859 MGI:2151355 NCBI chr 1:139,985,392...140,311,845
Ensembl chr 1:143,778,701...144,104,797
JBrowse link
G PCGF2 polycomb group ring finger 2 acts_upstream_of_or_within ISO (MGI:80640|PMID:8625838)
(MGI:3530206|PMID:15741318)
MGI PMID:8625838 PMID:15741318 MGI:3530206 MGI:80640 NCBI chr17:18,523,859...18,539,794
Ensembl chr17:18,798,917...18,814,838
JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639)
(MGI:3795695|PMID:18519639)
BHF-UCL PMID:18519639 MGI:3795695 NCBI chr 9:48,480,607...48,943,331
Ensembl chr 9:74,745,761...75,220,502
JBrowse link
G PDS5A PDS5 cohesin associated factor A acts_upstream_of_or_within ISO (MGI:3847057|PMID:19412548) MGI PMID:19412548 MGI:3847057 NCBI chr 4:34,149,622...34,303,065
Ensembl chr 4:40,002,869...40,156,698
JBrowse link
G RARG retinoic acid receptor gamma acts_upstream_of_or_within ISO (MGI:2154839|PMID:11784046), (MGI:60925|PMID:8388780) MGI PMID:8388780 PMID:11784046 MGI:2154839 MGI:60925 NCBI chr12:35,521,276...35,542,814
Ensembl chr12:36,303,359...36,325,111
JBrowse link
G RING1 ring finger protein 1 acts_upstream_of_or_within ISO (MGI:1926247|PMID:11060235), (MGI:3628673|PMID:16624538)
(MGI:3628673|PMID:16624538)
MGI PMID:11060235 PMID:16624538 MGI:1926247 MGI:3628673 NCBI chr 6:32,780,699...32,784,922
Ensembl chr 6:33,895,849...33,899,417
JBrowse link
G SCMH1 Scm polycomb group protein homolog 1 acts_upstream_of_or_within ISO (MGI:3703453|PMID:17215307) MGI PMID:17215307 MGI:3703453 NCBI chr 1:40,323,101...40,540,236
Ensembl chr 1:41,639,127...41,776,261
JBrowse link
G SF3B1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (MGI:3530206|PMID:15741318) MGI PMID:15741318 MGI:3530206 NCBI chr2B:84,633,272...84,678,602
Ensembl chr2B:202,530,200...202,573,346
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:2135419|PMID:11389830)
(MGI:1928592|PMID:11118883)
MGI PMID:11118883 PMID:11389830 MGI:1928592 MGI:2135419 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:2667288|PMID:12842913)
(MGI:1201281|PMID:9529255), (MGI:2136068|PMID:11418863)
MGI PMID:9529255 PMID:11418863 PMID:12842913 MGI:1201281 MGI:2136068 MGI:2667288 NCBI chr18:41,213,001...41,309,902
Ensembl chr18:44,580,905...44,668,530
JBrowse link
G SMAD4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:3051711|PMID:15215210) MGI PMID:15215210 MGI:3051711 NCBI chr18:44,402,112...44,456,779
Ensembl chr18:47,764,568...47,797,359
JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (MGI:5438143|PMID:22987639) MGI PMID:22987639 MGI:5438143 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:3039048|PMID:15084464)
(MGI:3614586|PMID:16399080)
MGI PMID:15084464 PMID:16399080 MGI:3039048 MGI:3614586 NCBI chr22:2,521,080...2,541,267 JBrowse link
G TBXT T-box transcription factor T acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr 6:164,112,117...164,122,253
Ensembl chr 6:169,095,723...169,106,595
JBrowse link
G TCF15 transcription factor 15 acts_upstream_of_or_within ISO (MGI:84545|PMID:8955271) MGI PMID:8955271 MGI:84545 NCBI chr20:811,907...817,971 JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (MGI:3695190|PMID:16845371) MGI PMID:16845371 MGI:3695190 NCBI chr 9:70,195,007...70,243,514
Ensembl chr 9:98,332,739...98,362,748
JBrowse link
G TSHZ1 teashirt zinc finger homeobox 1 acts_upstream_of_or_within ISO (MGI:3720547|PMID:17586487) MGI PMID:17586487 MGI:3720547 NCBI chr18:68,597,354...68,676,462
Ensembl chr18:71,873,594...71,951,654
JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within ISO (MGI:3844764|PMID:19334287) MGI PMID:19334287 MGI:3844764 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3835694|PMID:18849982) MGI PMID:18849982 MGI:3835694 NCBI chr 1:135,754,897...135,783,031
Ensembl chr 1:139,683,745...139,704,281
JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (MGI:3044441|PMID:15148409) MGI PMID:15148409 MGI:3044441 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3039991|PMID:15073149), (MGI:4413372|PMID:19795512) MGI PMID:15073149 PMID:19795512 MGI:3039991 MGI:4413372 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051
JBrowse link
G YY1 YY1 transcription factor acts_upstream_of_or_within ISO (MGI:3628673|PMID:16624538) MGI PMID:16624538 MGI:3628673 NCBI chr14:80,859,491...80,903,651 JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO (MGI:1859075|PMID:10835630) MGI PMID:10835630 MGI:1859075 NCBI chr11:108,938,414...109,133,819
Ensembl chr11:112,780,380...112,977,164
JBrowse link
G ZIC3 Zic family member 3 acts_upstream_of_or_within ISO (MGI:3624254|PMID:16496285) MGI PMID:16496285 MGI:3624254 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819
JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AURKA aurora kinase A acts_upstream_of_or_within ISO (MGI:5449118|PMID:22939930) MGI PMID:22939930 MGI:5449118 NCBI chr20:52,707,757...52,730,579
Ensembl chr20:53,994,881...54,017,339
JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:1889107|PMID:10964473) MGI PMID:10964473 MGI:1889107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752
JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (MGI:3776330|PMID:18241853)
(MGI:3042338|PMID:15004567)
MGI PMID:15004567 PMID:18241853 MGI:3042338 MGI:3776330 NCBI chr 9:14,552,062...14,559,632
Ensembl chr 9:15,063,766...15,066,776
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:1353237|PMID:10662781) MGI PMID:10662781 MGI:1353237 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G DDIT3 DNA damage inducible transcript 3 involved_in ISO (MGI:4821075|PMID:16434966) BHF-UCL PMID:16434966 MGI:4821075 NCBI chr12:31,406,332...31,410,293
Ensembl chr12:31,664,743...31,668,701
JBrowse link
G GPC3 glypican 3 acts_upstream_of_or_within ISO (MGI:1889107|PMID:10964473) MGI PMID:10964473 MGI:1889107 NCBI chr  X:122,677,072...123,131,511
Ensembl chr  X:132,979,612...133,432,441
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (MGI:3530185|PMID:15680351) MGI PMID:15680351 MGI:3530185 NCBI chr 8:76,286,433...76,290,507
Ensembl chr 8:77,913,761...77,921,201
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO (MGI:3530185|PMID:15680351) MGI PMID:15680351 MGI:3530185 NCBI chr 6:123,527,180...123,538,794
Ensembl chr 6:127,647,547...127,659,056
JBrowse link
G LDB1 LIM domain binding 1 acts_upstream_of_or_within ISO (MGI:2448170|PMID:12490556) MGI PMID:12490556 MGI:2448170 NCBI chr10:98,707,470...98,722,771
Ensembl chr10:102,179,757...102,184,047
JBrowse link
G LEFTY1 left-right determination factor 1 acts_upstream_of_or_within ISO (MGI:3042338|PMID:15004567) MGI PMID:15004567 MGI:3042338 NCBI chr 1:201,347,411...201,351,295
Ensembl chr 1:206,348,419...206,350,787
JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:1346311|PMID:10529425) MGI PMID:10529425 MGI:1346311 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972
JBrowse link
G PGAP1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO (MGI:1346311|PMID:10529425) MGI PMID:10529425 MGI:1346311 NCBI chr2B:84,076,945...84,166,385
Ensembl chr2B:201,983,321...202,064,467
JBrowse link
G RNF2 ring finger protein 2 acts_upstream_of_or_within ISO (MGI:2389282|PMID:12183370) MGI PMID:12183370 MGI:2389282 NCBI chr 1:160,568,438...160,626,783
Ensembl chr 1:164,721,458...164,779,420
JBrowse link
G SIX2 SIX homeobox 2 involved_in ISO (MGI:3794506|PMID:18321982) UniProt PMID:18321982 MGI:3794506 NCBI chr2A:45,109,414...45,113,887
Ensembl chr2A:46,039,582...46,044,035
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:2176418|PMID:11731796) MGI PMID:11731796 MGI:2176418 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080
JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (MGI:3044041|PMID:15155583) MGI PMID:15155583 MGI:3044041 NCBI chr 6:82,621,987...82,654,137
Ensembl chr 6:85,862,810...85,938,799
JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO (MGI:3776330|PMID:18241853) MGI PMID:18241853 MGI:3776330 NCBI chr 3:46,473,282...46,478,454
Ensembl chr 3:47,577,949...47,583,126
JBrowse link
G WLS Wnt ligand secretion mediator involved_in ISO (MGI:4397730|PMID:19841259) UniProt PMID:19841259 MGI:4397730 NCBI chr 1:67,336,009...67,470,265
Ensembl chr 1:69,318,742...69,425,652
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO (MGI:3580203|PMID:15870281) MGI PMID:15870281 MGI:3580203 NCBI chr12:66,992,207...67,107,313
Ensembl chr12:69,829,435...69,878,293
JBrowse link
G FZD5 frizzled class receptor 5 involved_in ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chr2B:95,003,246...95,010,577
Ensembl chr2B:213,133,017...213,134,774
JBrowse link
G TASOR transcription activation suppressor involved_in ISO (MGI:6109647|PMID:28839193) UniProt PMID:28839193 MGI:6109647 NCBI chr 3:56,555,945...56,619,151
Ensembl chr 3:57,771,656...57,834,077
JBrowse link
G TBX3 T-box transcription factor 3 involved_in ISO (PMID:9207801) UniProt PMID:9207801 NCBI chr12:112,240,050...112,254,299
Ensembl chr12:115,620,002...115,631,316
JBrowse link
G TCF7L1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:3043490 NCBI chr2A:85,186,660...85,363,033
Ensembl chr2A:86,739,417...86,913,905
JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO (MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:1303194 NCBI chr 3:46,473,282...46,478,454
Ensembl chr 3:47,577,949...47,583,126
JBrowse link
G WNT5A Wnt family member 5A involved_in ISO (MGI:4835157|PMID:9054360) BHF-UCL PMID:9054360 MGI:4835157 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G MED12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839483|PMID:20630950) MGI PMID:20630950 MGI:4839483 NCBI chr  X:60,386,820...60,410,730
Ensembl chr  X:70,443,667...70,466,942
JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469
JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759
JBrowse link
G DLL3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chr19:36,597,420...36,607,021 JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chr 7:2,781,493...2,790,936 JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:2181244|PMID:12001066) MGI PMID:12001066 MGI:2181244 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr 8:40,507,027...40,555,053 JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO (MGI:3611958|PMID:16314491) MGI PMID:16314491 MGI:3611958 NCBI chr20:6,765,161...6,777,728
Ensembl chr20:6,546,173...6,558,610
JBrowse link
G FOXH1 forkhead box H1 acts_upstream_of_or_within ISO (MGI:3055632|PMID:15363409) MGI PMID:15363409 MGI:3055632 NCBI chr 8:141,240,691...141,244,381
Ensembl chr 8:144,225,933...144,232,736
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:87488|PMID:9136932) MGI PMID:9136932 MGI:87488 NCBI chr 8:7,442,921...7,526,731 JBrowse link
epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2677178|PMID:14511481) MGI PMID:14511481 MGI:2677178 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972
JBrowse link
fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOG noggin involved_in ISO (PMID:8582276) BHF-UCL PMID:8582276 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092
JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FEZF1 FEZ family zinc finger 1 acts_upstream_of_or_within ISO (MGI:3702790|PMID:16971467) MGI PMID:16971467 MGI:3702790 NCBI chr 7:114,311,563...114,322,490
Ensembl chr 7:126,995,708...127,005,732
JBrowse link
G FEZF2 FEZ family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3702790|PMID:16971467) MGI PMID:16971467 MGI:3702790 NCBI chr 3:62,292,878...62,296,987
Ensembl chr 3:63,680,307...63,683,052
JBrowse link
G SIX3 SIX homeobox 3 acts_upstream_of_or_within ISO (MGI:3772426|PMID:18094027) MGI PMID:18094027 MGI:3772426 NCBI chr2A:45,038,634...45,072,867 JBrowse link
G WNT1 Wnt family member 1 acts_upstream_of_or_within ISO (MGI:3772426|PMID:18094027) MGI PMID:18094027 MGI:3772426 NCBI chr12:39,767,839...39,772,460
Ensembl chr12:40,648,413...40,652,583
JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX6 paired box 6 acts_upstream_of_or_within ISO (MGI:892757|PMID:9169845) MGI PMID:9169845 MGI:892757 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474
JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:4361775|PMID:19805295)
(MGI:4360856|PMID:19686689)
MGI PMID:19686689 PMID:19805295 MGI:4360856 MGI:4361775 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G WNT2 Wnt family member 2 acts_upstream_of_or_within ISO (MGI:4360856|PMID:19686689) MGI PMID:19686689 MGI:4360856 NCBI chr 7:109,244,772...109,291,472
Ensembl chr 7:121,936,031...121,985,862
JBrowse link
G WNT2B Wnt family member 2B acts_upstream_of_or_within ISO (MGI:4360856|PMID:19686689) MGI PMID:19686689 MGI:4360856 NCBI chr 1:115,119,360...115,177,942
Ensembl chr 1:125,173,906...125,230,675
JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EN1 engrailed homeobox 1 acts_upstream_of_or_within ISO (MGI:3525936|PMID:15607945) MGI PMID:15607945 MGI:3525936 NCBI chr2B:5,798,557...5,804,368 JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (MGI:3720541|PMID:17601531) MGI PMID:17601531 MGI:3720541 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916
JBrowse link
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (MGI:3624192|PMID:16651541) MGI PMID:16651541 MGI:3624192 NCBI chr2B:123,392,499...123,399,549 JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008), (MGI:4413372|PMID:19795512) MGI PMID:11029008 PMID:19795512 MGI:1891551 MGI:4413372 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G WNT1 Wnt family member 1 acts_upstream_of_or_within ISO (MGI:59176|PMID:2205396) MGI PMID:2205396 MGI:59176 NCBI chr12:39,767,839...39,772,460
Ensembl chr12:40,648,413...40,652,583
JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SSBP3 single stranded DNA binding protein 3 involved_in ISO (MGI:3578570|PMID:15857913) UniProt PMID:15857913 MGI:3578570 NCBI chr 1:53,501,656...53,680,682
Ensembl chr 1:55,094,820...55,272,207
JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT1 Wnt family member 1 acts_upstream_of_or_within ISO (MGI:76584|PMID:8555108) MGI PMID:8555108 MGI:76584 NCBI chr12:39,767,839...39,772,460
Ensembl chr12:40,648,413...40,652,583
JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (MGI:3624192|PMID:16651541) MGI PMID:16651541 MGI:3624192 NCBI chr2B:123,392,499...123,399,549 JBrowse link
G HES1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:2149154|PMID:11500373) MGI PMID:11500373 MGI:2149154 NCBI chr 3:191,432,513...191,435,387
Ensembl chr 3:201,749,044...201,754,257
JBrowse link
G HES3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (MGI:2149134|PMID:11522634) MGI PMID:11522634 MGI:2149134 NCBI chr 1:5,008,155...5,012,868
Ensembl chr 1:6,265,738...6,266,937
JBrowse link
G KDM2B lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chr12:119,027,633...119,183,779
Ensembl chr12:122,401,296...122,555,246
JBrowse link
negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TBX18 T-box transcription factor 18 involved_in ISO (MGI:3722519|PMID:17584735) BHF-UCL PMID:17584735 MGI:3722519 NCBI chr 6:82,621,987...82,654,137
Ensembl chr 6:85,862,810...85,938,799
JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FUZ fuzzy planar cell polarity protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr19:46,819,833...46,826,235
Ensembl chr19:55,736,325...55,742,589
JBrowse link
G OFD1 OFD1 centriole and centriolar satellite protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr  X:6,296,597...6,376,197
Ensembl chr  X:13,611,304...13,664,512
JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISO (MGI:5545944|PMID:23072809) UniProt PMID:23072809 MGI:5545944 NCBI chr 7:2,781,493...2,790,936 JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein acts_upstream_of_or_within ISO (MGI:5317364|PMID:21795391) MGI PMID:21795391 MGI:5317364 NCBI chr 9:108,358,959...108,361,586 JBrowse link
neural plate anterior/posterior regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELSR2 cadherin EGF LAG seven-pass G-type receptor 2 involved_in ISO (MGI:3765258|PMID:12755329) BHF-UCL PMID:12755329 MGI:3765258 NCBI chr 1:111,627,551...111,653,775
Ensembl chr 1:110,791,682...110,815,421
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLD6 phospholipase D family member 6 involved_in ISO (MGI:4943609|PMID:21397848) UniProt PMID:21397848 MGI:4943609 NCBI chr17:34,084,634...34,091,470
Ensembl chr17:39,016,859...39,023,398
JBrowse link
G TDRD5 tudor domain containing 5 involved_in ISO (MGI:4946318|PMID:21383078) UniProt PMID:21383078 MGI:4946318 NCBI chr 1:155,080,083...155,171,734
Ensembl chr 1:158,761,013...158,852,660
JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule involved_in ISO (MGI:5559673|PMID:11044396) Roslin_Institute PMID:11044396 MGI:5559673 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G WNT8A Wnt family member 8A acts_upstream_of_or_within ISO (MGI:3609071|PMID:16256739) MGI PMID:16256739 MGI:3609071 NCBI chr 5:133,419,324...133,471,094
Ensembl chr 5:139,598,229...139,605,926
JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ETS2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO (MGI:5546318|PMID:23552073) MGI PMID:23552073 MGI:5546318 NCBI chr21:25,158,457...25,178,035
Ensembl chr21:38,512,835...38,527,651
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr20:22,519,942...22,524,262 JBrowse link
G GDF3 growth differentiation factor 3 acts_upstream_of_or_within ISO (MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:3611720 NCBI chr12:7,813,288...7,819,418
Ensembl chr12:7,972,907...7,979,815
JBrowse link
G HHEX hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:4950786|PMID:21445260) MGI PMID:21445260 MGI:4950786 NCBI chr10:89,433,402...89,439,137
Ensembl chr10:92,947,373...92,952,992
JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:4950786|PMID:21445260) MGI PMID:21445260 MGI:4950786 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr14:37,370,926...37,381,610
Ensembl chr14:55,641,349...55,651,012
JBrowse link
G SRF serum response factor acts_upstream_of_or_within ISO (MGI:1312998|PMID:9799237) MGI PMID:9799237 MGI:1312998 NCBI chr 6:42,763,099...42,773,332
Ensembl chr 6:44,057,192...44,066,768
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051
JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:133,017,166...133,202,163
Ensembl chr 3:140,485,925...140,666,592
JBrowse link
regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOG noggin involved_in ISO (PMID:8582276) BHF-UCL PMID:8582276 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDX1 caudal type homeobox 1 involved_in ISO (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chr 5:145,591,186...145,608,976
Ensembl chr 5:151,592,139...151,614,257
JBrowse link
G CDX2 caudal type homeobox 2 involved_in ISO (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chr13:9,241,856...9,250,297
Ensembl chr13:27,586,340...27,593,632
JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5689216|PMID:26114479) UniProt PMID:26114479 MGI:5689216 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759
JBrowse link
G DMRT2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO (MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chr 9:860,271...867,704
Ensembl chr 9:1,055,473...1,060,962
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
ISO (PMID:19061953)
(MGI:4367298|PMID:19779553)
UniProt
MGI
PMID:19061953 PMID:19779553 MGI:4367298 NCBI chr 7:2,781,493...2,790,936 JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:72973|PMID:7789282) MGI PMID:7789282 MGI:72973 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740
JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chr2B:109,441,938...109,541,449
Ensembl chr2B:228,022,453...228,121,874
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (MGI:3578715|PMID:15889094) MGI PMID:15889094 MGI:3578715 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:20093472) UniProt PMID:20093472 NCBI chr  X:33,026,525...33,052,252
Ensembl chr  X:40,730,677...40,756,209
JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO (MGI:82985|PMID:8887324) MGI PMID:8887324 MGI:82985 NCBI chr10:22,477,755...22,487,894 JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (MGI:4421275|PMID:19913509) MGI PMID:19913509 MGI:4421275 NCBI chr 8:50,883,088...50,885,542
Ensembl chr 8:48,257,287...48,259,808
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chr2B:6,945,289...7,111,595
Ensembl chr2B:120,521,145...120,687,209
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr20:22,519,942...22,524,262 JBrowse link
G GDF3 growth differentiation factor 3 acts_upstream_of_or_within ISO (MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:3611720 NCBI chr12:7,813,288...7,819,418
Ensembl chr12:7,972,907...7,979,815
JBrowse link
G KDM6A lysine demethylase 6A acts_upstream_of_or_within ISO (MGI:5448135|PMID:22949634) MGI PMID:22949634 MGI:5448135 NCBI chr  X:37,313,000...37,548,630
Ensembl chr  X:45,127,382...45,362,029
JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chr15:68,470,528...68,473,209 JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein acts_upstream_of_or_within ISO (MGI:5438472|PMID:21998026) MGI PMID:21998026 MGI:5438472 NCBI chr 9:108,358,959...108,361,586 JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr14:37,370,926...37,381,610
Ensembl chr14:55,641,349...55,651,012
JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chr  X:95,998,718...96,003,843
Ensembl chr  X:106,377,932...106,381,193
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within
ISO (MGI:3613215|PMID:16326386)
(MGI:4459001|PMID:20346937)
UniProt
MGI
PMID:16326386 PMID:20346937 MGI:3613215 MGI:4459001 NCBI chr 6:81,748,370...81,754,129
Ensembl chr 6:85,022,737...85,027,930
JBrowse link
G SMAD4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:1195384|PMID:9420335) MGI PMID:9420335 MGI:1195384 NCBI chr18:44,402,112...44,456,779
Ensembl chr18:47,764,568...47,797,359
JBrowse link
G TBX6 T-box transcription factor 6 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 Ensembl chr16:30,460,305...30,467,070 JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr12:121,169,915...121,183,524
Ensembl chr12:125,397,391...125,410,794
JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COBL cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr 7:51,652,318...51,952,256
Ensembl chr 7:51,895,807...52,097,841
JBrowse link
G DLL1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (MGI:3034157|PMID:14960495) MGI PMID:14960495 MGI:3034157 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759
JBrowse link
G MEOX1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO (MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:2669571 NCBI chr17:13,733,235...13,756,584
Ensembl chr17:13,982,668...14,003,820
JBrowse link
G MEOX2 mesenchyme homeobox 2 acts_upstream_of_or_within ISO (MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:2669571 NCBI chr 7:16,268,225...16,343,914
Ensembl chr 7:15,598,466...15,673,935
JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI1 abl interactor 1 acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr10:26,863,648...26,975,376
Ensembl chr10:27,227,960...27,339,434
JBrowse link
G ATM ATM serine/threonine kinase acts_upstream_of_or_within ISO (MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:3624894 NCBI chr11:103,109,979...103,256,405
Ensembl chr11:106,584,228...106,727,041
JBrowse link
G AXIN2 axin 2 acts_upstream_of_or_within ISO (MGI:3037351|PMID:12636920) MGI PMID:12636920 MGI:3037351 NCBI chr17:59,476,336...59,509,358
Ensembl chr17:64,688,416...64,720,086
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:3702797 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912
JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5296388|PMID:22072575) UniProt PMID:22072575 MGI:5296388 NCBI chr 9:94,473,423...94,511,285
Ensembl chr 9:123,011,968...123,032,855
JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
ISO (MGI:5545944|PMID:23072809)
(MGI:3578712|PMID:15902259)
UniProt
MGI
PMID:15902259 PMID:23072809 MGI:3578712 MGI:5545944 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759
JBrowse link
G DLL3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO (MGI:1095777|PMID:9272948)
(MGI:3620337|PMID:15170697)
MGI PMID:9272948 PMID:15170697 MGI:1095777 MGI:3620337 NCBI chr19:36,597,420...36,607,021 JBrowse link
G EP300 E1A binding protein p300 acts_upstream_of_or_within ISO (MGI:3583034|PMID:15937931) MGI PMID:15937931 MGI:3583034 NCBI chr22:21,986,467...22,076,921
Ensembl chr22:40,079,503...40,168,604
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chr2B:6,945,289...7,111,595
Ensembl chr2B:120,521,145...120,687,209
JBrowse link
G FOXB1 forkhead box B1 involved_in ISO (MGI:3771770|PMID:18064677) UniProt PMID:18064677 MGI:3771770 NCBI chr15:38,979,727...38,983,040
Ensembl chr15:57,284,077...57,285,054
JBrowse link
G FOXC1 forkhead box C1 involved_in ISO (MGI:2150572|PMID:11562355) UniProt PMID:11562355 MGI:2150572 NCBI chr 6:1,429,051...1,433,180 JBrowse link
G FOXC2 forkhead box C2 involved_in ISO (MGI:2150572|PMID:11562355) UniProt PMID:11562355 MGI:2150572 NCBI chr16:67,237,476...67,239,545 JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:1928688|PMID:11124112) MGI PMID:11124112 MGI:1928688 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949
JBrowse link
G HES7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO (MGI:2152470|PMID:11641270), (MGI:4367298|PMID:19779553)
(MGI:3046002|PMID:15170214)
MGI PMID:11641270 PMID:15170214 PMID:19779553 MGI:2152470 MGI:3046002 MGI:4367298 NCBI chr17:43,530,919...43,537,999 JBrowse link
G KAT2A lysine acetyltransferase 2A acts_upstream_of_or_within ISO (MGI:3583034|PMID:15937931)
(MGI:3709911|PMID:17325035)
MGI PMID:15937931 PMID:17325035 MGI:3583034 MGI:3709911 NCBI chr17:15,194,414...15,202,818
Ensembl chr17:15,416,075...15,424,197
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (MGI:1334099|PMID:10090727)
(MGI:3510574|PMID:15545629)
MGI PMID:10090727 PMID:15545629 MGI:1334099 MGI:3510574 NCBI chr 4:100,552,959...100,674,156
Ensembl chr 4:111,125,312...111,245,980
JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
ISO (MGI:5545944|PMID:23072809)
(MGI:3774705|PMID:18234727)
UniProt
MGI
PMID:18234727 PMID:23072809 MGI:3774705 MGI:5545944 NCBI chr 7:2,781,493...2,790,936 JBrowse link
G LOC100970132 interferon-induced transmembrane protein 1 acts_upstream_of_or_within ISO (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 Ensembl chr11:353,236...354,986 JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G MED12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:4839544 NCBI chr  X:60,386,820...60,410,730
Ensembl chr  X:70,443,667...70,466,942
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:3578712 NCBI chr15:68,470,528...68,473,209 JBrowse link
G MIB1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (MGI:3603078|PMID:16000382) MGI PMID:16000382 MGI:3603078 NCBI chr18:14,944,432...15,113,313
Ensembl chr18:18,641,135...18,740,813
JBrowse link
G MSGN1 mesogenin 1 acts_upstream_of_or_within ISO (MGI:1928575|PMID:11124811), (MGI:5545970|PMID:21750544) MGI PMID:11124811 PMID:21750544 MGI:1928575 MGI:5545970 NCBI chr2A:17,797,769...17,799,243
Ensembl chr2A:17,926,027...17,926,608
JBrowse link
G MYF5 myogenic factor 5 acts_upstream_of_or_within ISO (MGI:3849775|PMID:19531352)
(MGI:1861090|PMID:10929709)
(MGI:78390|PMID:8565825)
MGI PMID:8565825 PMID:10929709 PMID:19531352 MGI:1861090 MGI:3849775 MGI:78390 NCBI chr12:78,236,945...78,239,701
Ensembl chr12:81,347,324...81,350,389
JBrowse link
G MYF6 myogenic factor 6 acts_upstream_of_or_within ISO (MGI:76810|PMID:7588068) MGI PMID:7588068 MGI:76810 NCBI chr12:78,226,562...78,229,470
Ensembl chr12:81,338,339...81,340,176
JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr2B:70,193,950...70,308,442
Ensembl chr2B:188,003,235...188,116,710
JBrowse link
G NKX3-1 NK3 homeobox 1 acts_upstream_of_or_within ISO (PMID:9621431) BHF-UCL PMID:9621431 NCBI chr 8:22,926,145...22,930,396
Ensembl chr 8:19,863,275...19,864,942
JBrowse link
G NLE1 notchless homolog 1 acts_upstream_of_or_within ISO (MGI:5608942|PMID:24875805) MGI PMID:24875805 MGI:5608942 NCBI chr17:21,643,865...21,654,169
Ensembl chr17:21,935,800...21,946,049
JBrowse link
G PALB2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO (MGI:4459579|PMID:20484223) MGI PMID:20484223 MGI:4459579 NCBI chr16:14,470,367...14,507,841
Ensembl chr16:23,855,535...23,892,117
JBrowse link
G PAX1 paired box 1 acts_upstream_of_or_within ISO (MGI:3590033|PMID:16093716) MGI PMID:16093716 MGI:3590033 NCBI chr20:21,663,155...21,676,880 JBrowse link
G PCDH8 protocadherin 8 acts_upstream_of_or_within ISO (MGI:2451199|PMID:12591245) MGI PMID:12591245 MGI:2451199 NCBI chr13:33,880,543...33,886,243
Ensembl chr13:52,688,522...52,692,399
JBrowse link
G PLXNA2 plexin A2 acts_upstream_of_or_within ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chr 1:183,600,533...183,848,418
Ensembl chr 1:188,408,048...188,603,208
JBrowse link
G POFUT1 protein O-fucosyltransferase 1 acts_upstream_of_or_within ISO (MGI:2660984|PMID:12697902) MGI PMID:12697902 MGI:2660984 NCBI chr20:28,496,987...28,527,817
Ensembl chr20:29,625,481...29,655,722
JBrowse link
G POGLUT1 protein O-glucosyltransferase 1 acts_upstream_of_or_within ISO (MGI:1267118|PMID:9636176) MGI PMID:9636176 MGI:1267118 NCBI chr 3:116,591,271...116,617,382
Ensembl chr 3:123,503,899...123,529,919
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO (MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:3624894 NCBI chr 8:44,201,391...44,386,803
Ensembl chr 8:41,593,029...41,778,299
JBrowse link
G PSEN1 presenilin 1 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553)
(MGI:87649|PMID:9153393)
MGI PMID:9153393 PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 MGI:87649 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876
JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553) MGI PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 NCBI chr 1:202,328,987...202,354,440
Ensembl chr 1:207,320,937...207,346,295
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO (MGI:4367298|PMID:19779553) MGI PMID:19779553 MGI:4367298 NCBI chr 4:20,719,548...20,835,439
Ensembl chr 4:25,995,263...26,107,683
JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in
ISO (MGI:3715395|PMID:17531978)
(MGI:3613215|PMID:16326386)
MGI
UniProt
PMID:16326386 PMID:17531978 MGI:3613215 MGI:3715395 NCBI chr 6:81,748,370...81,754,129
Ensembl chr 6:85,022,737...85,027,930
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (MGI:3037488|PMID:14745966) MGI PMID:14745966 MGI:3037488 NCBI chr 9:62,782,183...63,005,626
Ensembl chr 9:90,851,983...90,965,084
JBrowse link
G SEMA3C semaphorin 3C acts_upstream_of_or_within ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chr 7:72,706,615...72,884,163
Ensembl chr 7:86,368,753...86,545,580
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:10654605)
(MGI:3618960|PMID:16467359)
BHF-UCL
MGI
PMID:10654605 PMID:16467359 MGI:3618960 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258
JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185
JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (MGI:3044041|PMID:15155583) MGI PMID:15155583 MGI:3044041 NCBI chr 6:82,621,987...82,654,137
Ensembl chr 6:85,862,810...85,938,799
JBrowse link
G TBXT T-box transcription factor T acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171)
(MGI:64493|PMID:8293872)
(MGI:3701028|PMID:16835439)
MGI PMID:8293872 PMID:15384171 PMID:16835439 MGI:3056222 MGI:3701028 MGI:64493 NCBI chr 6:164,112,117...164,122,253
Ensembl chr 6:169,095,723...169,106,595
JBrowse link
G TCAP titin-cap acts_upstream_of_or_within ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr17:17,622,318...17,625,252
Ensembl chr17:17,839,139...17,842,727
JBrowse link
G TCF15 transcription factor 15 acts_upstream_of_or_within ISO (MGI:84545|PMID:8955271) MGI PMID:8955271 MGI:84545 NCBI chr20:811,907...817,971 JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr12:121,169,915...121,183,524
Ensembl chr12:125,397,391...125,410,794
JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within ISO (MGI:3709913|PMID:17320900) MGI PMID:17320900 MGI:3709913 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120
JBrowse link
G TTN titin acts_upstream_of_or_within ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr2B:65,783,512...66,064,618 JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (MGI:3037351|PMID:12636920)
(MGI:3611726|PMID:16291790), (MGI:64780|PMID:8299937)
MGI PMID:8299937 PMID:12636920 PMID:16291790 MGI:3037351 MGI:3611726 MGI:64780 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051
JBrowse link
G XRCC2 X-ray repair cross complementing 2 acts_upstream_of_or_within ISO (MGI:3708426|PMID:17116431) MGI PMID:17116431 MGI:3708426 NCBI chr 7:144,229,031...144,256,854
Ensembl chr 7:156,378,685...156,406,516
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (MGI:3590396|PMID:16157277), (MGI:3624924|PMID:16598713) MGI PMID:16157277 PMID:16598713 MGI:3590396 MGI:3624924 NCBI chr2B:15,325,094...15,460,908
Ensembl chr2B:148,460,904...148,596,500
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chr2A:19,333,101...19,340,267
Ensembl chr2A:19,451,067...19,458,229
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chr2A:19,333,101...19,340,267
Ensembl chr2A:19,451,067...19,458,229
JBrowse link
specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in ISO (PMID:10706139), (PMID:17118062) UniProt PMID:10706139 PMID:17118062 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752
JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDF11 growth differentiation factor 11 acts_upstream_of_or_within ISO (MGI:3701017|PMID:16790475) MGI PMID:16790475 MGI:3701017 NCBI chr12:33,154,530...33,168,427
Ensembl chr12:33,879,180...33,893,252
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCANP1 dendritic cell associated nuclear protein involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:130,838,844...130,839,588
Ensembl chr 5:136,979,950...136,980,694
JBrowse link
G NEUROG1 neurogenin 1 involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:130,922,727...130,924,403
Ensembl chr 5:137,064,339...137,065,052
JBrowse link
G TIFAB TIFA inhibitor involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:130,836,697...130,846,050
Ensembl chr 5:136,983,040...136,983,525
JBrowse link
G WT1 WT1 transcription factor involved_in ISO (MGI:62488|PMID:8395349) UniProt PMID:8395349 MGI:62488 NCBI chr11:32,349,807...32,398,494
Ensembl chr11:32,238,720...32,287,249
JBrowse link
transforming growth factor beta receptor signaling pathway involved in primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2677178|PMID:14511481) MGI PMID:14511481 MGI:2677178 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr10:48,950,704...48,953,815
Ensembl chr10:51,084,027...51,089,776
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3055483|PMID:15469977) MGI PMID:15469977 MGI:3055483 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258
JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO RGD PMID:25281935 RGD:12832757 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr2B:70,193,950...70,308,442
Ensembl chr2B:188,003,235...188,116,710
JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO (MGI:1858546|PMID:10809672) MGI PMID:10809672 MGI:1858546 NCBI chr15:80,029,225...80,226,027
Ensembl chr15:99,312,512...99,460,444
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12627
    multicellular organismal process 6517
      pattern specification process 454
        regionalization 365
          anterior/posterior pattern specification 223
            anterior region determination 0
            anterior/posterior axis specification + 51
            anterior/posterior pattern specification involved in kidney development + 2
            anterior/posterior pattern specification, imaginal disc + 0
            compartment pattern specification + 4
            embryonic heart tube anterior/posterior pattern specification + 3
            forebrain anterior/posterior pattern specification 4
            foregut regionalization + 3
            neural plate anterior/posterior regionalization + 6
            periodic partitioning by pair rule gene 0
            posterior abdomen determination + 0
            rostrocaudal neural tube patterning + 14
            somitogenesis + 75
            spinal cord anterior/posterior patterning + 1
            thorax and anterior abdomen determination + 4
Path 2
Term Annotations click to browse term
  biological_process 12627
    developmental process 5880
      anatomical structure development 5485
        multicellular organism development 5016
          pattern specification process 454
            regionalization 365
              anterior/posterior pattern specification 223
                anterior region determination 0
                anterior/posterior axis specification + 51
                anterior/posterior pattern specification involved in kidney development + 2
                anterior/posterior pattern specification, imaginal disc + 0
                compartment pattern specification + 4
                embryonic heart tube anterior/posterior pattern specification + 3
                forebrain anterior/posterior pattern specification 4
                foregut regionalization + 3
                neural plate anterior/posterior regionalization + 6
                periodic partitioning by pair rule gene 0
                posterior abdomen determination + 0
                rostrocaudal neural tube patterning + 14
                somitogenesis + 75
                spinal cord anterior/posterior patterning + 1
                thorax and anterior abdomen determination + 4
paths to the root