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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of catabolic process
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Accession:GO:0009896 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances.
Synonyms:exact_synonym: positive regulation of breakdown;   positive regulation of catabolism;   positive regulation of degradation;   up regulation of catabolic process;   upregulation of catabolic process
 narrow_synonym: activation of catabolic process;   stimulation of catabolic process



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3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr28:6,523,894...6,724,010
Ensembl chr28:6,529,212...6,723,454
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in ISO (PMID:26489465) UniProt PMID:26489465 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G DND1 DND microRNA-mediated repression inhibitor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:35,825,154...35,827,913
Ensembl chr 2:35,825,636...35,827,840
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:20805360 RGD:10042974 NCBI chr32:6,323,444...6,341,238
Ensembl chr32:6,323,469...6,341,166
JBrowse link
G KHSRP KH-type splicing regulatory protein involved_in ISO (PMID:16126846)
(PMID:28275056)
UniProt
CACAO
PMID:16126846 PMID:28275056 NCBI chr20:53,746,656...53,755,388
Ensembl chr20:53,745,742...53,756,870
JBrowse link
G MOV10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:24726324) UniProt PMID:24726324 NCBI chr17:62,872,607...62,896,208
Ensembl chr17:62,872,756...62,896,395
JBrowse link
G PLEKHN1 pleckstrin homology domain containing N1 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 5:56,193,824...56,202,340
Ensembl chr 5:56,194,583...56,202,293
JBrowse link
G QKI QKI, KH domain containing RNA binding acts_upstream_of_or_within ISO (MGI:5316962|PMID:20631256) MGI PMID:20631256 MGI:5316962 NCBI chr 1:51,800,294...51,956,891
Ensembl chr 1:51,800,309...51,952,714
JBrowse link
G RBM24 RNA binding motif protein 24 involved_in ISO (PMID:24375645) UniProt PMID:24375645 NCBI chr35:16,255,076...16,294,967 JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671) UniProt PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 NCBI chr 7:25,265,836...25,312,417
Ensembl chr 7:25,233,235...25,305,174
JBrowse link
G TARDBP TAR DNA binding protein involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:84,987,752...84,998,136
Ensembl chr 2:84,989,952...84,998,593
JBrowse link
G TRIM71 tripartite motif containing 71 involved_in ISO (PMID:23125361) CACAO PMID:23125361 NCBI chr23:3,888,287...3,959,910
Ensembl chr23:3,893,647...3,960,411
JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:44,234,411...44,271,129
Ensembl chr20:44,236,264...44,270,916
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr15:4,972,369...4,984,218
Ensembl chr15:4,972,956...4,980,371
JBrowse link
G ZC3H12D zinc finger CCCH-type containing 12D involved_in ISO (MGI:5707103|PMID:26134560) UniProt PMID:26134560 MGI:5707103 NCBI chr 1:40,249,856...40,279,344
Ensembl chr 1:40,259,705...40,279,888
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in ISO (MGI:5795824|PMID:17288565)
(MGI:5784976|PMID:22701344), (MGI:5788345|PMID:27193233)
(PMID:14679154), (PMID:15187101), (PMID:15634918), (PMID:15766526)
(PMID:11719186), (PMID:15687258), (PMID:20221403), (PMID:27193233), (PMID:9703499)
UniProt PMID:9703499 PMID:11719186 PMID:14679154 PMID:15187101 PMID:15634918 More... MGI:5784976 MGI:5788345 MGI:5795824 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:42,663,287...42,668,665
Ensembl chr 8:42,664,223...42,668,514
JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in ISO (MGI:4818820|PMID:20622884), (MGI:5784976|PMID:22701344)
(PMID:25106868)
UniProt PMID:20622884 PMID:22701344 PMID:25106868 MGI:4818820 MGI:5784976 NCBI chr10:45,746,952...45,751,268
Ensembl chr10:45,748,936...45,751,250
JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA2D4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr27:43,840,190...43,961,067
Ensembl chr27:43,844,529...44,041,637
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807625|PMID:18625844) Ensembl
Ensembl
MGI
PMID:18625844 GO_REF:0000107 MGI:3807625 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G DCP1A decapping mRNA 1A involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
InterPro
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr20:36,597,457...36,661,362
Ensembl chr20:36,597,178...36,657,756
JBrowse link
G DCP1B decapping mRNA 1B involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
InterPro
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr27:43,987,778...44,041,661
Ensembl chr27:43,844,529...44,041,637
JBrowse link
G DCP2 decapping mRNA 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
InterPro
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 4:35,256,772...35,298,974
Ensembl chr 4:35,256,970...35,299,021
JBrowse link
G DCPS decapping enzyme, scavenger involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
InterPro
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 5:8,168,887...8,212,582
Ensembl chr 5:8,172,313...8,212,832
JBrowse link
G LSM1 LSM1 homolog, mRNA degradation associated involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr16:27,304,257...27,315,389
Ensembl chr16:27,304,198...27,315,233
JBrowse link
G NOCT nocturnin acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chr19:3,587,769...3,612,184
Ensembl chr19:3,588,695...3,609,307
JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chr25:11,416,321...11,550,830
Ensembl chr25:11,417,657...11,550,810
JBrowse link
G PATL1 PAT1 homolog 1, processing body mRNA decay factor involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
GO_Central
Ensembl
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr18:37,109,288...37,138,756
Ensembl chr18:37,109,410...37,137,156
JBrowse link
G PATL2 PAT1 homolog 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr30:11,306,972...11,316,454
Ensembl chr30:11,307,492...11,316,427
JBrowse link
exonucleolytic catabolism of deadenylated mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT6 CCR4-NOT transcription complex subunit 6 involved_in ISO (PMID:20065043) UniProt PMID:20065043 NCBI chr11:1,209,732...1,277,435
Ensembl chr11:1,212,546...1,270,997
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G CNOT8 CCR4-NOT transcription complex subunit 8 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 4:54,935,476...54,956,000
Ensembl chr 4:54,938,961...54,954,416
JBrowse link
G EXOSC2 exosome component 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 9:53,266,396...53,276,236
Ensembl chr 9:53,266,401...53,276,677
JBrowse link
G EXOSC3 exosome component 3 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr11:54,072,993...54,079,024
Ensembl chr11:54,073,313...54,078,598
JBrowse link
G EXOSC5 exosome component 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:112,599,519...112,609,039
Ensembl chr 1:112,599,568...112,608,941
JBrowse link
G EXOSC7 exosome component 7 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr20:43,343,573...43,379,614
Ensembl chr20:43,343,573...43,379,574
JBrowse link
G EXOSC8 exosome component 8 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr25:3,698,399...3,708,342
Ensembl chr25:3,698,483...3,769,683
JBrowse link
G EXOSC9 exosome component 9 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr19:18,324,117...18,336,628
Ensembl chr19:18,324,119...18,336,602
JBrowse link
mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELF1 CUGBP Elav-like family member 1 involved_in ISO PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chr18:42,105,316...42,199,017
Ensembl chr18:42,105,324...42,179,161
JBrowse link
G CNOT6L CCR4-NOT transcription complex subunit 6 like acts_upstream_of_or_within ISO (MGI:3828348|PMID:17452450) MGI PMID:17452450 MGI:3828348 NCBI chr32:2,192,800...2,305,526
Ensembl chr32:2,145,813...2,306,229
JBrowse link
G FTO FTO alpha-ketoglutarate dependent dioxygenase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:61,699,864...62,080,199
Ensembl chr 2:61,652,236...62,080,059
JBrowse link
G GIGYF2 GRB10 interacting GYF protein 2 involved_in ISO (PMID:27157137) ParkinsonsUK-UCL PMID:27157137 NCBI chr25:44,317,540...44,453,761
Ensembl chr25:44,317,517...44,452,064
JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chr 2:76,073,553...76,108,763
Ensembl chr 2:76,077,022...76,105,433
JBrowse link
G METTL14 methyltransferase 14, N6-adenosine-methyltransferase subunit involved_in ISO (MGI:5559905|PMID:24394384), (MGI:5927282|PMID:28965759) UniProt PMID:24394384 PMID:28965759 MGI:5559905 MGI:5927282 NCBI chr32:37,653,163...37,679,577
Ensembl chr32:37,653,035...37,678,398
JBrowse link
G METTL16 methyltransferase 16, N6-methyladenosine involved_in ISO (MGI:6114846|PMID:29262316) UniProt PMID:29262316 MGI:6114846 NCBI chr 9:46,491,503...46,566,752
Ensembl chr 9:46,496,963...46,558,313
JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (MGI:5559905|PMID:24394384), (MGI:5621227|PMID:25569111), (MGI:5621254|PMID:25456834), (MGI:5927282|PMID:28965759), (MGI:6094929|PMID:28792938), (MGI:6095345|PMID:28637692) UniProt PMID:24394384 PMID:25456834 PMID:25569111 PMID:28637692 PMID:28792938 More... MGI:5559905 MGI:5621227 MGI:5621254 MGI:5927282 MGI:6094929 MGI:6095345 NCBI chr15:18,528,755...18,546,303
Ensembl chr15:18,528,772...18,546,531
JBrowse link
G MIR144 microRNA mir-144 involved_in ISO (MGI:6442632|PMID:30971389) MGI PMID:30971389 MGI:6442632 NCBI chr 9:43,031,035...43,031,094
Ensembl chr 9:43,031,035...43,031,094
JBrowse link
G MIR451 microRNA mir-451 involved_in ISO (MGI:6442632|PMID:30971389) MGI PMID:30971389 MGI:6442632 NCBI chr 9:43,030,863...43,030,931
Ensembl chr 9:43,030,863...43,030,931
JBrowse link
G PUM1 pumilio RNA binding family member 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:69,907,655...70,044,055
Ensembl chr 2:69,907,735...70,042,680
JBrowse link
G RBM24 RNA binding motif protein 24 involved_in ISO (PMID:29104163) UniProt PMID:29104163 NCBI chr35:16,255,076...16,294,967 JBrowse link
G RIDA reactive intermediate imine deaminase A homolog involved_in ISO (PMID:30930054) UniProt PMID:30930054 NCBI chr13:348,744...361,063
Ensembl chr13:348,860...361,522
JBrowse link
G ROCK1 Rho associated coiled-coil containing protein kinase 1 involved_in ISO (MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:6271078 NCBI chr 7:66,862,614...67,001,538
Ensembl chr 7:66,862,608...67,142,853
JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 involved_in ISO (MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:6271078 NCBI chr17:7,931,786...8,012,484
Ensembl chr17:7,934,739...8,178,707
JBrowse link
G YTHDF1 YTH N6-methyladenosine RNA binding protein 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr24:46,927,218...46,940,015
Ensembl chr24:46,927,848...46,951,949
JBrowse link
G YTHDF2 YTH N6-methyladenosine RNA binding protein 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:71,760,232...71,791,420
Ensembl chr 2:71,760,312...71,792,527
JBrowse link
G YTHDF3 YTH N6-methyladenosine RNA binding protein 3 involved_in ISO (PMID:32492408)
(MGI:6490006|PMID:32943573)
(PMID:28106072)
UniProt PMID:28106072 PMID:32492408 PMID:32943573 MGI:6490006 NCBI chr29:13,239,900...13,280,035
Ensembl chr29:13,239,966...13,277,051
JBrowse link
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL16 methyltransferase 16, N6-methyladenosine involved_in ISO (PMID:28525753) UniProt PMID:28525753 NCBI chr 9:46,491,503...46,566,752
Ensembl chr 9:46,496,963...46,558,313
JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) UniProt PMID:32354837 NCBI chr26:24,355,326...24,403,306
Ensembl chr26:24,355,826...24,402,827
JBrowse link
negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSDE1 cold shock domain containing E1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:52,418,978...52,458,427
Ensembl chr17:52,420,048...52,458,329
JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr32:6,323,444...6,341,238
Ensembl chr32:6,323,469...6,341,166
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in ISO (PMID:19029303) ComplexPortal PMID:19029303 NCBI chr 7:35,832,956...35,842,898
Ensembl chr 7:35,833,988...35,843,754
JBrowse link
G IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:25,199,287...25,240,693
Ensembl chr 9:25,198,805...25,240,578
JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISO (PMID:11051545) ComplexPortal PMID:11051545 NCBI chr13:2,563,698...2,580,610
Ensembl chr13:2,564,065...2,580,368
JBrowse link
G PAIP1 poly(A) binding protein interacting protein 1 involved_in ISO (PMID:11051545) ComplexPortal PMID:11051545 NCBI chr 4:66,460,946...66,490,437
Ensembl chr 4:66,461,257...66,528,051
JBrowse link
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein involved_in ISO (PMID:11051545), (PMID:19029303) ComplexPortal PMID:11051545 PMID:19029303 NCBI chr12:45,613,947...45,644,879
Ensembl chr12:45,618,234...45,644,778
JBrowse link
G YBX1 Y-box binding protein 1 involved_in ISO (PMID:19029303) ComplexPortal PMID:19029303 NCBI chr15:646,301...666,347
Ensembl chr15:646,584...666,329
JBrowse link
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TENT4A terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chr34:7,021,743...7,063,049
Ensembl chr34:7,020,187...7,063,129
JBrowse link
G TENT4B terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chr 2:65,068,088...65,147,853
Ensembl chr 2:65,071,111...65,147,896
JBrowse link
G TOB1 transducer of ERBB2, 1 involved_in ISO (PMID:18377426) UniProt PMID:18377426 NCBI chr 9:26,736,805...26,741,119
Ensembl chr 9:26,736,675...26,740,177
Ensembl chr 9:26,736,675...26,740,177
JBrowse link
nuclear polyadenylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC7 exosome component 7 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr20:43,343,573...43,379,614
Ensembl chr20:43,343,573...43,379,574
JBrowse link
G EXOSC8 exosome component 8 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr25:3,698,399...3,708,342
Ensembl chr25:3,698,483...3,769,683
JBrowse link
G EXOSC9 exosome component 9 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr19:18,324,117...18,336,628
Ensembl chr19:18,324,119...18,336,602
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:16934922) UniProt PMID:16934922 NCBI chr10:56,478,771...56,520,992
Ensembl chr10:56,478,680...56,520,967
JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:58,038,456...58,138,364
Ensembl chr 2:58,038,483...58,137,622
JBrowse link
G CNOT6L CCR4-NOT transcription complex subunit 6 like acts_upstream_of_or_within ISO (MGI:3828348|PMID:17452450) MGI PMID:17452450 MGI:3828348 NCBI chr32:2,192,800...2,305,526
Ensembl chr32:2,145,813...2,306,229
JBrowse link
G DCPS decapping enzyme, scavenger involved_in IEA UniProt GO_REF:0000117 NCBI chr 5:8,168,887...8,212,582
Ensembl chr 5:8,172,313...8,212,832
JBrowse link
G PAN2 poly(A) specific ribonuclease subunit PAN2 involved_in IEA UniProt GO_REF:0000104 NCBI chr10:621,286...636,899
Ensembl chr10:621,281...634,495
JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 involved_in IEA UniProt GO_REF:0000104 NCBI chr25:11,416,321...11,550,830
Ensembl chr25:11,417,657...11,550,810
JBrowse link
G PDE12 phosphodiesterase 12 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr20:32,884,819...32,890,995
Ensembl chr20:32,886,972...32,890,890
JBrowse link
G POLR2D RNA polymerase II subunit D involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr19:22,754,118...22,774,054
Ensembl chr19:22,754,141...22,774,231
JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:25,265,836...25,312,417
Ensembl chr 7:25,233,235...25,305,174
JBrowse link
G RC3H2 ring finger and CCCH-type domains 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 9:59,881,889...59,943,271
Ensembl chr 9:59,881,966...59,929,341
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:23644599)
(MGI:3589099|PMID:15814898)
UniProt
MGI
PMID:15814898 PMID:23644599 MGI:3589099 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3589099|PMID:15814898) Ensembl
Ensembl
MGI
PMID:15814898 GO_REF:0000107 MGI:3589099 NCBI chr 8:42,663,287...42,668,665
Ensembl chr 8:42,664,223...42,668,514
JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 acts_upstream_of_or_within ISO (MGI:3589099|PMID:15814898) MGI PMID:15814898 MGI:3589099 NCBI chr10:45,746,952...45,751,268
Ensembl chr10:45,748,936...45,751,250
JBrowse link
nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT2 CCR4-NOT transcription complex subunit 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr10:12,057,269...12,174,405
Ensembl chr10:12,009,762...12,172,427
JBrowse link
G CNOT3 CCR4-NOT transcription complex subunit 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:103,057,392...103,070,612
Ensembl chr 1:103,057,542...103,066,887
JBrowse link
G CNOT6 CCR4-NOT transcription complex subunit 6 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr11:1,209,732...1,277,435
Ensembl chr11:1,212,546...1,270,997
JBrowse link
G CNOT6L CCR4-NOT transcription complex subunit 6 like involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr32:2,192,800...2,305,526
Ensembl chr32:2,145,813...2,306,229
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807625|PMID:18625844) Ensembl
Ensembl
MGI
PMID:18625844 GO_REF:0000107 MGI:3807625 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G MLH1 mutL homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1934053|PMID:11337385) Ensembl
Ensembl
MGI
PMID:11337385 GO_REF:0000107 MGI:1934053 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116
JBrowse link
G PAN2 poly(A) specific ribonuclease subunit PAN2 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
UniProt
InterPro
UniProt
PMID:21873635 GO_REF:0000002 GO_REF:0000104 NCBI chr10:621,286...636,899
Ensembl chr10:621,281...634,495
JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 involved_in IBA
IEA
(PMID:21873635) GO_Central
UniProt
InterPro
GO_Central
UniProt
PMID:21873635 GO_REF:0000002 GO_REF:0000104 NCBI chr25:11,416,321...11,550,830
Ensembl chr25:11,417,657...11,550,810
JBrowse link
G PARN poly(A)-specific ribonuclease acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:3785219|PMID:18337750)
(PMID:21873635)
MGI
GO_Central
GO_Central
PMID:18337750 PMID:21873635 MGI:3785219 NCBI chr 6:28,629,137...28,783,671
Ensembl chr 6:28,629,174...28,783,901
JBrowse link
G PNLDC1 PARN like ribonuclease domain containing exonuclease 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:49,045,153...49,063,008
Ensembl chr 1:49,044,979...49,062,802
JBrowse link
G SAMD4A sterile alpha motif domain containing 4A involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 8:30,476,425...30,687,240
Ensembl chr 8:30,476,418...30,687,240
JBrowse link
G SAMD4B sterile alpha motif domain containing 4B involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:113,828,432...113,857,336
Ensembl chr 1:113,828,447...113,857,314
JBrowse link
G ZFP36 ZFP36 ring finger protein acts_upstream_of_or_within
involved_in
ISO (MGI:3589099|PMID:15814898)
(PMID:23644599)
MGI
BHF-UCL
PMID:15814898 PMID:23644599 MGI:3589099 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
polyuridylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIS3L2 DIS3 like 3'-5' exoribonuclease 2 involved_in IEA UniProt
UniProt
GO_REF:0000104 NCBI chr25:43,754,382...44,099,497
Ensembl chr25:43,754,484...44,095,381
JBrowse link
G TUT4 terminal uridylyl transferase 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:8,832,208...8,958,136
Ensembl chr15:8,832,199...9,047,152
JBrowse link
G TUT7 terminal uridylyl transferase 7 involved_in ISO (MGI:6162305|PMID:28792939) UniProt PMID:28792939 MGI:6162305 NCBI chr 1:73,400,648...73,464,935
Ensembl chr 1:73,401,421...73,475,493
JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG3 BAG cochaperone 3 involved_in ISO (PMID:18006506) ARUK-UCL PMID:18006506 NCBI chr28:29,792,612...29,815,466
Ensembl chr28:29,792,777...29,815,138
JBrowse link
G HSPB8 heat shock protein family B (small) member 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr26:15,337,718...15,349,993
Ensembl chr26:15,336,864...15,355,757
JBrowse link
G HTT huntingtin involved_in ISO (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chr 3:61,076,934...61,221,462
Ensembl chr 3:61,079,904...61,330,290
JBrowse link
positive regulation of anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC20 cell division cycle 20 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr15:16,803,204...16,806,935
Ensembl chr15:16,803,204...16,806,919
JBrowse link
G CDC20B cell division cycle 20B involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:42,501,365...42,547,336
Ensembl chr 2:42,502,471...42,544,841
JBrowse link
G FZR1 fizzy and cell division cycle 20 related 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr20:55,866,893...55,877,077
Ensembl chr20:55,869,693...55,876,936
JBrowse link
positive regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464
JBrowse link
G CASP3 caspase 3 involved_in ISO (PMID:14713960)
(MGI:6828711|PMID:9545256)
ComplexPortal PMID:9545256 PMID:14713960 MGI:6828711 NCBI chr16:45,920,074...45,940,507
Ensembl chr16:45,920,071...45,940,505
JBrowse link
G ENDOG endonuclease G ISO RGD PMID:16407272 RGD:9685355 NCBI chr 9:54,809,470...54,812,795
Ensembl chr 9:54,809,530...54,813,042
JBrowse link
G HSF1 heat shock transcription factor 1 ISO RGD PMID:21192280 RGD:10403035 NCBI chr13:37,724,741...37,745,259
Ensembl chr13:37,724,759...37,745,252
JBrowse link
G IGFBP3 insulin like growth factor binding protein 3 ISO RGD PMID:15125883 RGD:10402776 NCBI chr16:1,021,855...1,027,604
Ensembl chr16:1,021,972...1,026,392
JBrowse link
G IL6 interleukin 6 involved_in ISO (PMID:28433754) ARUK-UCL PMID:28433754 NCBI chr14:36,474,268...36,478,519
Ensembl chr14:36,473,394...36,478,519
JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG2A autophagy related 2A involved_in ISO (PMID:30952800), (PMID:31271352) UniProt PMID:30952800 PMID:31271352 NCBI chr18:52,258,070...52,277,953
Ensembl chr18:52,258,187...52,277,965
JBrowse link
G BECN1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chr 9:20,204,203...20,215,081
Ensembl chr 9:20,204,220...20,214,236
JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) BHF-UCL PMID:21072319 NCBI chr 6:42,612,130...42,681,161
Ensembl chr 6:42,613,546...42,681,015
JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) GO_Central PMID:25484098 NCBI chr 9:55,855,576...55,894,915
Ensembl chr 9:55,856,091...55,894,488
JBrowse link
G MOAP1 modulator of apoptosis 1 involved_in ISO (PMID:33783314)
(MGI:6810697|PMID:33783314)
UniProt PMID:33783314 MGI:6810697
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:10,464,019...10,642,365
Ensembl chr 2:10,463,010...10,640,327
JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:23,445,350...23,473,195
Ensembl chr 9:23,445,482...23,470,184
JBrowse link
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr10:1,670,076...1,680,975
Ensembl chr10:1,672,380...1,680,840
JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chr19:37,861,844...38,006,433
Ensembl chr19:37,861,804...37,963,501
JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chr38:14,927,670...15,025,554
Ensembl chr38:14,928,628...15,025,865
JBrowse link
G RALB RAS like proto-oncogene B involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr19:29,820,006...29,868,345
Ensembl chr19:29,768,359...29,868,335
JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in ISO (MGI:5634888|PMID:21068542)
(PMID:21068542)
UniProt PMID:21068542 MGI:5634888 NCBI chr 6:61,439,414...61,471,414
Ensembl chr 6:61,439,415...61,462,087
JBrowse link
G SNX18 sorting nexin 18 involved_in ISO (PMID:29437695) UniProt PMID:29437695 NCBI chr 4:60,803,245...60,945,317
Ensembl chr 4:60,835,783...60,945,828
JBrowse link
G SNX30 sorting nexin family member 30 involved_in ISO (PMID:32513819) UniProt PMID:32513819 NCBI chr11:67,233,469...67,294,159
Ensembl chr11:67,233,256...67,289,224
JBrowse link
G SNX4 sorting nexin 4 involved_in ISO (PMID:32513819), (PMID:33468622) UniProt PMID:32513819 PMID:33468622 NCBI chr33:28,413,586...28,468,546
Ensembl chr33:28,419,128...28,469,488
JBrowse link
G SNX7 sorting nexin 7 involved_in ISO (PMID:32513819) UniProt PMID:32513819 NCBI chr 6:51,004,307...51,388,283
Ensembl chr 6:51,025,203...51,094,539
JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chr26:968,714...982,244
Ensembl chr26:970,138...982,229
JBrowse link
G WDR45 WD repeat domain 45 involved_in ISO (PMID:31271352) UniProt PMID:31271352 NCBI chr  X:42,221,261...42,237,535
Ensembl chr  X:42,218,046...42,226,422
JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:31271352) UniProt PMID:31271352 NCBI chr 9:15,115,098...15,147,893
Ensembl chr 9:15,115,315...15,149,147
JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADRB2 adrenoceptor beta 2 involved_in ISS GO_Central
GO_Central
GO_REF:0000024 NCBI chr 4:60,048,502...60,050,447
Ensembl chr 4:59,941,517...60,050,298
JBrowse link
G CALCOCO2 calcium binding and coiled-coil domain 2 involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 9:25,050,603...25,078,147
Ensembl chr 9:25,050,690...25,077,557
JBrowse link
G CLEC16A C-type lectin domain containing 16A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5603233|PMID:24949970) MGI
Ensembl
Ensembl
PMID:24949970 GO_REF:0000107 MGI:5603233 NCBI chr 6:31,560,940...31,757,100
Ensembl chr 6:31,562,834...31,757,678
JBrowse link
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr20:42,520,241...42,593,886
Ensembl chr20:42,525,435...42,590,243
JBrowse link
G LOC481473 immunity-related GTPase family M protein involved_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chr11:793,416...795,373
Ensembl chr11:793,424...794,617
JBrowse link
G LOC606863 immunity-related GTPase family M protein-like involved_in ISO (MGI:3656111|PMID:16888103) UniProt PMID:16888103 MGI:3656111 NCBI chr11:506,981...523,338
Ensembl chr11:509,636...510,829
JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl
Ensembl
GO_REF:0000107 Ensembl chr 5:41,254,347...41,263,138 JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) HGNC PMID:28195531
positive regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGER advanced glycosylation end-product specific receptor ISO RGD PMID:22293957 RGD:7245565 NCBI chr12:1,574,251...1,577,410
Ensembl chr12:1,574,251...1,577,129
JBrowse link
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in ISO (MGI:6810795|PMID:24980959)
(PMID:32333458)
(PMID:21358617), (PMID:31123703)
RGD
UniProt
PMID:21358617 PMID:24980959 PMID:25117440 PMID:31123703 PMID:32333458 MGI:6810795 RGD:11552604 NCBI chr18:42,903,815...43,073,918
Ensembl chr18:42,932,513...43,072,827
JBrowse link
G ATF6 activating transcription factor 6 acts_upstream_of_or_within ISO (PMID:28747345) MGI PMID:28747345 NCBI chr38:20,705,167...20,903,852
Ensembl chr38:20,709,038...20,903,814
JBrowse link
G ATG101 autophagy related 101 involved_in ISO (MGI:6810791|PMID:19225151) ComplexPortal PMID:19225151 MGI:6810791 NCBI chr27:2,931,595...2,934,914
Ensembl chr27:2,931,893...2,935,123
JBrowse link
G ATG13 autophagy related 13 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr18:42,834,538...42,886,873
Ensembl chr18:42,836,755...42,886,855
JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr25:44,761,034...44,800,033
Ensembl chr25:44,761,185...44,798,672
JBrowse link
G ATG7 autophagy related 7 ISO RGD PMID:24674959 PMID:25639566 RGD:11553823 RGD:11553824 NCBI chr20:6,916,354...7,154,849
Ensembl chr20:6,916,515...7,154,800
JBrowse link
G BECN1 beclin 1 involved_in ISO
IEA
RGD
Ensembl
Ensembl
PMID:24674959 GO_REF:0000107 RGD:11553823 NCBI chr 9:20,204,203...20,215,081
Ensembl chr 9:20,204,220...20,214,236
JBrowse link
G DAPK1 death associated protein kinase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:72,278,939...72,448,907
Ensembl chr 1:72,280,103...72,447,822
JBrowse link
G DCN decorin involved_in IEA InterPro
InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr15:31,833,492...31,887,699
Ensembl chr15:31,833,746...31,877,417
JBrowse link
G DHRSX dehydrogenase/reductase X-linked involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr  X:1,172,404...1,288,088
Ensembl chr  X:1,170,522...1,285,390
JBrowse link
G ENDOG endonuclease G involved_in ISO (PMID:33473107)
(MGI:6504770|PMID:33473107)
UniProt PMID:33473107 MGI:6504770 NCBI chr 9:54,809,470...54,812,795
Ensembl chr 9:54,809,530...54,813,042
JBrowse link
G FLCN folliculin involved_in ISO (PMID:25126726) UniProt PMID:25126726 NCBI chr 5:42,176,093...42,195,718
Ensembl chr 5:42,176,291...42,195,711
JBrowse link
G FOXO1 forkhead box O1 involved_in ISO (PMID:20543840) UniProt PMID:20543840 NCBI chr25:603,433...706,961
Ensembl chr25:603,543...702,825
JBrowse link
G FOXO3 forkhead box O3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:65,552,455...65,673,467
Ensembl chr12:65,552,310...65,670,198
JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in ISO (MGI:5319706|PMID:22539723) UniProt PMID:22539723 MGI:5319706 NCBI chr 1:112,129,116...112,138,714
Ensembl chr 1:112,103,825...112,138,559
JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in ISO (MGI:5825416|PMID:26160071)
(MGI:5319706|PMID:22539723)
BHF-UCL
UniProt
PMID:22539723 PMID:26160071 MGI:5319706 MGI:5825416 NCBI chr33:23,458,369...23,659,878
Ensembl chr33:23,463,767...23,659,666
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO
IEA
RGD
Ensembl
Ensembl
PMID:23604926 GO_REF:0000107 RGD:10402086 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G HPSE heparanase involved_in ISO (PMID:26249176) ComplexPortal PMID:26249176 NCBI chr32:7,166,437...7,199,659
Ensembl chr32:7,167,856...7,199,665
JBrowse link
G IFNG interferon gamma involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr10:10,406,866...10,411,698
Ensembl chr10:10,406,867...10,411,698
JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in ISO (MGI:5319706|PMID:22539723)
(PMID:30704899)
UniProt PMID:22539723 PMID:30704899 MGI:5319706 NCBI chr18:51,499,615...51,507,434
Ensembl chr18:51,499,938...51,576,699
JBrowse link
G LOC481473 immunity-related GTPase family M protein involved_in ISO (PMID:16888103), (PMID:25891078), (PMID:28389568) UniProt PMID:16888103 PMID:25891078 PMID:28389568 NCBI chr11:793,416...795,373
Ensembl chr11:793,424...794,617
JBrowse link
G LOC606863 immunity-related GTPase family M protein-like involved_in ISO (MGI:3656111|PMID:16888103) UniProt PMID:16888103 MGI:3656111 NCBI chr11:506,981...523,338
Ensembl chr11:509,636...510,829
JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr27:13,282,824...13,420,917
Ensembl chr27:13,283,756...13,420,870
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 ISO RGD PMID:26581593 RGD:12879823 NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479
JBrowse link
G MEFV MEFV innate immuity regulator, pyrin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:37,964,776...37,984,830
Ensembl chr 6:37,970,608...37,983,737
JBrowse link
G MID2 midline 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:81,267,037...81,467,613
Ensembl chr  X:81,296,249...81,463,210
JBrowse link
G MTDH metadherin involved_in ISO (PMID:21127263) UniProt PMID:21127263 NCBI chr29:41,675,601...41,732,389
Ensembl chr29:41,640,035...41,729,949
JBrowse link
G NPRL2 NPR2 like, GATOR1 complex subunit involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr20:39,005,699...39,009,183
Ensembl chr20:39,005,734...39,009,189
JBrowse link
G OPTN optineurin involved_in ISO (PMID:21617041) GO_Central PMID:21617041 NCBI chr 2:23,356,471...23,390,569
Ensembl chr 2:23,357,237...23,392,511
JBrowse link
G ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:28747345)
(MGI:6099440|PMID:28747345)
Ensembl
Ensembl
MGI
PMID:28747345 GO_REF:0000107 MGI:6099440 NCBI chr 9:22,594,425...22,601,108
Ensembl chr 9:22,594,480...22,599,999
JBrowse link
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr21:39,693,211...39,868,603
Ensembl chr21:39,695,520...39,784,639
JBrowse link
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase involved_in ISO (MGI:4361989|PMID:17476689) UniProt PMID:17476689 MGI:4361989 NCBI chr  X:42,072,495...42,077,741
Ensembl chr  X:42,073,457...42,077,543
JBrowse link
G PLEKHF1 pleckstrin homology and FYVE domain containing 1 involved_in ISO (PMID:22115783) BHF-UCL PMID:22115783 NCBI chr 1:121,776,122...121,802,881
Ensembl chr 1:121,781,181...121,782,578
Ensembl chr 1:121,781,181...121,782,578
JBrowse link
G PLK2 polo like kinase 2 involved_in ISO (PMID:23983262) ParkinsonsUK-UCL PMID:23983262 NCBI chr 2:45,359,865...45,365,496
Ensembl chr 2:45,360,374...45,367,441
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO (MGI:5285135|PMID:21258367)
(PMID:22012985)
(PMID:26103054)
UniProt
ParkinsonsUK-UCL
PMID:21258367 PMID:22012985 PMID:26103054 MGI:5285135 NCBI chr 4:68,579,061...68,614,548
Ensembl chr 4:68,579,037...68,611,841
JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in ISO (MGI:5285135|PMID:21258367) UniProt PMID:21258367 MGI:5285135 NCBI chr 5:52,809,792...52,855,072
Ensembl chr 5:52,815,609...52,876,609
JBrowse link
G PRKD1 protein kinase D1 involved_in ISO (PMID:22095288) ParkinsonsUK-UCL PMID:22095288 NCBI chr 8:9,004,641...9,327,054
Ensembl chr 8:9,005,115...9,328,358
JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr29:4,445,668...4,544,223
Ensembl chr29:4,375,785...4,517,168
JBrowse link
G RNF152 ring finger protein 152 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
InterPro
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:14,914,508...15,001,843
Ensembl chr 1:14,985,769...14,986,380
JBrowse link
G ROCK1 Rho associated coiled-coil containing protein kinase 1 involved_in ISO (PMID:27853422) ARUK-UCL PMID:27853422 NCBI chr 7:66,862,614...67,001,538
Ensembl chr 7:66,862,608...67,142,853
JBrowse link
G SH3BP4 SH3 domain binding protein 4 involved_in ISO (PMID:22575674) UniProt PMID:22575674 NCBI chr25:46,049,631...46,133,065
Ensembl chr25:46,049,475...46,155,519
JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in ISO (PMID:17891140)
(MGI:3770552|PMID:17891140)
UniProt PMID:17891140 MGI:3770552 NCBI chr 6:61,439,414...61,471,414
Ensembl chr 6:61,439,415...61,462,087
JBrowse link
G SMO smoothened, frizzled class receptor ISO RGD PMID:31221056 RGD:150521664 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033
JBrowse link
G STK11 serine/threonine kinase 11 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:57,558,966...57,579,163
Ensembl chr20:57,559,424...57,579,118
JBrowse link
G SVIP small VCP interacting protein involved_in ISO (PMID:21909394) UniProt PMID:21909394 NCBI chr21:44,408,467...44,418,160
Ensembl chr21:44,408,474...44,415,739
JBrowse link
G TFEB transcription factor EB involved_in ISO (PMID:21617040), (PMID:22576015)
(PMID:23434374)
UniProt PMID:21617040 PMID:22576015 PMID:23434374 NCBI chr12:10,367,979...10,423,478
Ensembl chr12:10,368,599...10,452,619
JBrowse link
G TICAM1 toll like receptor adaptor molecule 1 involved_in ISO (MGI:3718934|PMID:17658277) ParkinsonsUK-UCL PMID:17658277 MGI:3718934 NCBI chr20:54,948,237...54,961,996
Ensembl chr20:54,959,525...54,961,780
JBrowse link
G TLR9 toll like receptor 9 ISO RGD PMID:18632594 RGD:2301341 NCBI chr20:37,529,322...37,547,117
Ensembl chr20:37,542,340...37,547,114
Ensembl chr20:37,542,340...37,547,114
JBrowse link
G TMEM59 transmembrane protein 59 involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 5:54,959,895...54,991,978
Ensembl chr 5:54,960,069...54,987,758
JBrowse link
G TP53INP1 tumor protein p53 inducible nuclear protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr29:39,575,782...39,593,389
Ensembl chr29:39,580,496...39,593,518
JBrowse link
G TP53INP2 tumor protein p53 inducible nuclear protein 2 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr24:23,768,208...23,801,268
Ensembl chr24:23,792,687...23,799,331
JBrowse link
G TPCN1 two pore segment channel 1 involved_in ISO (PMID:22012985) ParkinsonsUK-UCL PMID:22012985 NCBI chr26:10,599,898...10,662,269
Ensembl chr26:10,599,780...10,660,767
JBrowse link
G TRIM21 tripartite motif containing 21 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr21:26,775,227...26,783,180
Ensembl chr21:26,775,672...26,783,725
JBrowse link
G TRIM22 tripartite motif containing 22 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr21:28,677,196...28,696,413
Ensembl chr21:28,682,973...28,695,185
JBrowse link
G TRIM27 tripartite motif containing 27 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:25,904,381...25,922,531
Ensembl chr35:25,905,396...25,923,336
JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:70,453,130...70,465,030
Ensembl chr11:70,462,007...70,463,974
JBrowse link
G TRIM34 tripartite motif containing 34 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr21:28,635,177...28,656,759
Ensembl chr21:28,635,396...28,654,490
JBrowse link
G TRIM38 tripartite motif containing 38 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:23,894,521...23,939,392
Ensembl chr35:23,926,287...23,939,466
JBrowse link
G TRIM65 tripartite motif containing 65 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 9:4,713,535...4,720,268
Ensembl chr 9:4,714,086...4,718,592
JBrowse link
G TRIM68 tripartite motif containing 68 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr21:26,982,173...26,992,162
Ensembl chr21:26,982,876...26,989,144
JBrowse link
G TRIM8 tripartite motif containing 8 involved_in ISO (PMID:26347139) UniProt PMID:26347139 NCBI chr28:15,124,310...15,138,660
Ensembl chr28:15,123,348...15,146,355
JBrowse link
G TRIML1 tripartite motif family like 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr16:42,954,353...42,984,128
Ensembl chr16:42,954,012...42,980,309
JBrowse link
G TRIML2 tripartite motif family like 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr16:42,984,204...43,000,037
Ensembl chr16:42,984,303...43,000,051
JBrowse link
G TSC2 TSC complex subunit 2 involved_in ISO (MGI:5509101|PMID:23878245) ParkinsonsUK-UCL PMID:23878245 MGI:5509101 NCBI chr 6:38,865,509...38,898,977
Ensembl chr 6:38,865,507...38,898,960
JBrowse link
G UFL1 UFM1 specific ligase 1 involved_in ISO (MGI:5818653|PMID:25952549) UniProt PMID:25952549 MGI:5818653 NCBI chr12:54,988,200...55,023,414
Ensembl chr12:54,988,264...55,021,626
JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr26:968,714...982,244
Ensembl chr26:970,138...982,229
JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 5:40,355,070...40,437,758
Ensembl chr 5:40,354,263...40,435,747
JBrowse link
G XBP1 X-box binding protein 1 involved_in ISO (PMID:23184933) UniProt PMID:23184933 NCBI chr26:22,162,675...22,168,149
Ensembl chr26:22,163,222...22,168,105
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:4,972,369...4,984,218
Ensembl chr15:4,972,956...4,980,371
JBrowse link
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2L11 BCL2 like 11 ISO RGD PMID:25772147 RGD:13782257 NCBI chr17:35,619,804...35,665,782
Ensembl chr17:35,619,582...35,664,587
JBrowse link
G BID BH3 interacting domain death agonist ISO RGD PMID:25772147 RGD:13782257 NCBI chr27:45,344,304...45,355,735
Ensembl chr27:45,337,145...45,384,059
JBrowse link
G DDIT3 DNA damage inducible transcript 3 ISO RGD PMID:25772147 RGD:13782257 NCBI chr10:1,606,693...1,612,410
Ensembl chr10:1,606,693...1,611,303
JBrowse link
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BNIP3 BCL2 interacting protein 3 ISO RGD PMID:23698117 RGD:11561968 NCBI chr28:40,037,681...40,050,499
Ensembl chr28:40,038,643...40,049,797
JBrowse link
G FBXO7 F-box protein 7 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr10:30,928,059...30,948,858
Ensembl chr10:30,928,329...30,948,977
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692
JBrowse link
G HTT huntingtin involved_in ISO (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chr 3:61,076,934...61,221,462
Ensembl chr 3:61,079,904...61,330,290
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:49,886,887...51,201,930
Ensembl chr 1:49,889,005...51,201,764
JBrowse link
positive regulation of cellular catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRRK2 leucine rich repeat kinase 2 involved_in IEA UniProt
UniProt
GO_REF:0000117 NCBI chr27:13,282,824...13,420,917
Ensembl chr27:13,283,756...13,420,870
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IEA UniProt
UniProt
GO_REF:0000117 NCBI chr 4:68,579,061...68,614,548
Ensembl chr 4:68,579,037...68,611,841
JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA UniProt
UniProt
GO_REF:0000117 NCBI chr 5:52,809,792...52,855,072
Ensembl chr 5:52,815,609...52,876,609
JBrowse link
G ZER1 zyg-11 related cell cycle regulator involved_in IEA UniProt
UniProt
GO_REF:0000117 NCBI chr 9:54,842,607...54,873,336
Ensembl chr 9:54,842,317...54,871,717
JBrowse link
G ZYG11A zyg-11 family member A, cell cycle regulator involved_in IEA UniProt
UniProt
GO_REF:0000117 NCBI chr 5:55,992,533...56,067,430
Ensembl chr 5:55,994,036...56,066,303
JBrowse link
G ZYG11B zyg-11 family member B, cell cycle regulator involved_in IEA UniProt
UniProt
GO_REF:0000117 NCBI chr15:8,595,200...8,681,668
Ensembl chr15:8,597,738...8,681,364
JBrowse link
positive regulation of cellular protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMER1 APC membrane recruitment protein 1 involved_in ISO (PMID:17510365) ParkinsonsUK-UCL PMID:17510365 NCBI chr  X:49,426,228...49,449,448 JBrowse link
G DACT1 dishevelled binding antagonist of beta catenin 1 involved_in ISO (PMID:16446366)
(PMID:18936100)
ParkinsonsUK-UCL PMID:16446366 PMID:18936100 NCBI chr 8:33,950,016...33,959,671
Ensembl chr 8:33,949,926...33,958,449
JBrowse link
G EZR ezrin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:48,160,206...48,210,036
Ensembl chr 1:48,160,206...48,210,036
JBrowse link
G FAF1 Fas associated factor 1 involved_in ISO (PMID:26842564) UniProt PMID:26842564 NCBI chr15:10,232,520...10,691,106
Ensembl chr15:10,232,614...10,690,741
JBrowse link
G FBXL5 F-box and leucine rich repeat protein 5 acts_upstream_of_or_within ISO (MGI:5292406|PMID:21907140) MGI PMID:21907140 MGI:5292406 NCBI chr 3:64,683,770...64,727,161
Ensembl chr 3:64,575,348...64,726,931
JBrowse link
G HAMP hepcidin antimicrobial peptide acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5293184|PMID:21700773) MGI
Ensembl
Ensembl
PMID:21700773 GO_REF:0000107 MGI:5293184 NCBI chr 1:117,305,531...117,306,587
Ensembl chr 1:117,305,411...117,306,619
JBrowse link
G HSP90AA1 heat shock protein 90 alpha family class A member 1 involved_in ISO (PMID:18292230) ARUK-UCL PMID:18292230 NCBI chr 8:70,091,203...70,096,107
Ensembl chr 8:70,092,217...70,095,243
JBrowse link
G LOC100856547 PTTG1 interacting protein acts_upstream_of_or_within ISO (PMID:24506068) MGI PMID:24506068 NCBI chr31:38,494,608...38,513,997 JBrowse link
G MSN moesin involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chr  X:50,708,913...50,775,404
Ensembl chr  X:50,708,704...50,773,762
JBrowse link
G RDX radixin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:22,555,913...22,642,822
Ensembl chr 5:22,571,286...22,642,811
JBrowse link
G TNFAIP3 TNF alpha induced protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3839729|PMID:18952128) Ensembl
Ensembl
MGI
PMID:18952128 GO_REF:0000107 MGI:3839729 NCBI chr 1:30,247,432...30,262,992
Ensembl chr 1:30,251,059...30,261,001
JBrowse link
G VGLL4 vestigial like family member 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:6,751,951...6,915,650
Ensembl chr20:6,751,801...6,913,201
JBrowse link
G VPS11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chr 5:14,776,975...14,786,736
Ensembl chr 5:14,776,976...14,786,692
JBrowse link
G VPS35 VPS35 retromer complex component involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:8,428,073...8,454,601
Ensembl chr15:8,428,172...8,454,049
JBrowse link
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLK3 polo like kinase 3 involved_in ISO (PMID:27344333) ParkinsonsUK-UCL PMID:27344333 NCBI chr15:15,519,042...15,523,960
Ensembl chr15:15,519,026...15,524,230
JBrowse link
positive regulation of collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IDUA alpha-L-iduronidase acts_upstream_of_or_within ISO (MGI:4397742|PMID:19834056) MGI PMID:19834056 MGI:4397742 NCBI chr 3:91,517,225...91,534,593
Ensembl chr 3:91,522,035...91,534,593
JBrowse link
G VSIR V-set immunoregulatory receptor involved_in ISO (PMID:20666777) UniProt PMID:20666777 NCBI chr 4:22,504,888...22,530,702
Ensembl chr 4:22,459,363...22,530,687
JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZFP36 ZFP36 ring finger protein involved_in ISO (PMID:16364915) UniProt PMID:16364915 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
positive regulation of DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase ISO RGD PMID:27895165 RGD:12879393 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
positive regulation of ER-associated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAP31 B cell receptor associated protein 31 involved_in IC
IEA
(PMID:18555783) ParkinsonsUK-UCL
ParkinsonsUK-UCL
Ensembl
PMID:18555783 GO_REF:0000107 NCBI chr  X:121,515,417...121,550,373
Ensembl chr  X:121,507,084...121,545,263
JBrowse link
G CAV1 caveolin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:55,458,934...55,494,563
Ensembl chr14:55,461,048...55,492,935
JBrowse link
G HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:59,388,492...59,400,028
Ensembl chr 2:59,388,494...59,400,003
JBrowse link
G SGTA small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23246001) ParkinsonsUK-UCL PMID:23246001 NCBI chr20:56,432,688...56,451,438
Ensembl chr20:56,441,724...56,450,215
JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:75,767,345...75,812,278
Ensembl chr 1:75,767,188...75,838,051
JBrowse link
G UBQLN2 ubiquilin 2 involved_in ISO (PMID:18307982) UniProt PMID:18307982 NCBI chr  X:47,860,923...47,864,282 JBrowse link
positive regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN3 ataxin 3 involved_in ISO (PMID:17000876) ParkinsonsUK-UCL PMID:17000876 NCBI chr 8:1,318,440...1,354,814
Ensembl chr 8:1,247,155...1,354,720
JBrowse link
G BAG6 BAG cochaperone 6 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:1,126,730...1,141,978
Ensembl chr12:1,126,732...1,137,896
JBrowse link
G FBXW8 F-box and WD repeat domain containing 8 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr26:13,520,605...13,640,975
Ensembl chr26:13,412,189...13,638,258
JBrowse link
G RNF185 ring finger protein 185 involved_in ISO (PMID:27485036) UniProt PMID:27485036 NCBI chr26:24,146,172...24,177,747
Ensembl chr26:24,146,005...24,240,653
JBrowse link
G RNFT1 ring finger protein, transmembrane 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
InterPro
Ensembl
InterPro
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr 9:34,430,119...34,442,760
Ensembl chr 9:34,335,554...34,442,374
JBrowse link
G RNFT2 ring finger protein, transmembrane 2 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr26:13,410,393...13,500,716
Ensembl chr26:13,412,189...13,638,258
JBrowse link
G TMEM259 transmembrane protein 259 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr20:57,695,004...57,703,650
Ensembl chr20:57,695,002...57,749,891
JBrowse link
G TMEM67 transmembrane protein 67 ISO RGD PMID:19815549 RGD:8554391 NCBI chr29:38,655,531...38,715,774
Ensembl chr29:38,654,733...38,720,559
JBrowse link
G USP13 ubiquitin specific peptidase 13 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr34:13,059,099...13,175,980
Ensembl chr34:13,059,092...13,171,234
JBrowse link
positive regulation of fatty acid beta-oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCD1 ATP binding cassette subfamily D member 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:121,545,690...121,564,117
Ensembl chr  X:121,545,586...121,563,186
JBrowse link
G ABCD2 ATP binding cassette subfamily D member 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr27:14,015,093...14,084,362
Ensembl chr27:14,015,091...14,163,312
JBrowse link
G ACSL5 acyl-CoA synthetase long chain family member 5 ISO RGD PMID:14711823 RGD:2312802 NCBI chr28:23,437,838...23,478,763
Ensembl chr28:23,440,387...23,478,762
JBrowse link
G AKT2 AKT serine/threonine kinase 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:113,359,038...113,407,119
Ensembl chr 1:113,359,575...113,407,131
JBrowse link
G CPT1A carnitine palmitoyltransferase 1A ISO RGD PMID:19302064 RGD:2311346 NCBI chr18:49,136,691...49,190,117
Ensembl chr18:49,136,691...49,190,117
JBrowse link
G FABP1 fatty acid binding protein 1 ISO peroxisomal RGD PMID:16262600 RGD:1626442 NCBI chr17:38,242,119...38,247,969
Ensembl chr17:38,242,119...38,247,962
JBrowse link
G IRS1 insulin receptor substrate 1 involved_in ISO (PMID:16814735) BHF-UCL PMID:16814735 NCBI chr25:39,624,554...39,687,991 JBrowse link
G IRS2 insulin receptor substrate 2 involved_in ISO (PMID:16814735) BHF-UCL PMID:16814735 NCBI chr22:58,197,016...58,229,026
Ensembl chr22:58,223,387...58,227,535
JBrowse link
G MTLN mitoregulin involved_in ISO (MGI:6278482|PMID:29949755) UniProt PMID:29949755 MGI:6278482
G MTLN mitoregulin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 Ensembl chr17:35,142,133...35,142,303 JBrowse link
G PLIN5 perilipin 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:55,181,171...55,189,369
Ensembl chr20:55,181,198...55,189,366
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in ISO (PMID:20007935) BHF-UCL PMID:20007935
positive regulation of glucose catabolic process to lactate via pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 involved_in ISO (MGI:3759354|PMID:17828264) UniProt PMID:17828264 MGI:3759354 NCBI chr18:50,787,353...50,801,036
Ensembl chr18:50,787,353...50,801,197
JBrowse link
positive regulation of glucosylceramide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRKCD protein kinase C delta involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:36,723,491...36,751,982
Ensembl chr20:36,723,809...36,752,191
JBrowse link
positive regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADRA1B adrenoceptor alpha 1B acts_upstream_of_or_within ISO (MGI:3027459|PMID:14581480) MGI PMID:14581480 MGI:3027459 NCBI chr 4:50,676,816...50,724,999
Ensembl chr 4:50,677,255...50,724,999
JBrowse link
G HMGB1 high mobility group box 1 acts_upstream_of_or_within ISO (MGI:1339514|PMID:10391216) MGI PMID:10391216 MGI:1339514 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
positive regulation of glycolytic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APP amyloid beta precursor protein involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr31:21,351,207...21,614,466
Ensembl chr31:21,351,207...21,614,337
JBrowse link
G ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (MGI:4881347|PMID:21074248) UniProt PMID:21074248 MGI:4881347 NCBI chr 8:47,193,463...47,245,865
Ensembl chr 8:47,196,439...47,229,964
JBrowse link
G ESRRB estrogen related receptor beta involved_in ISO PMID:24481529 BHF-UCL PMID:24481529 RGD:12910990 NCBI chr 8:49,253,877...49,424,148
Ensembl chr 8:49,253,332...49,421,332
JBrowse link
G GCK glucokinase ISO RGD PMID:17553851 RGD:2301905
G GPD1 glycerol-3-phosphate dehydrogenase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1927687|PMID:11147825) MGI
Ensembl
Ensembl
PMID:11147825 GO_REF:0000107 MGI:1927687 NCBI chr27:4,614,878...4,622,013
Ensembl chr27:4,614,864...4,621,922
JBrowse link
G HTR2A 5-hydroxytryptamine receptor 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3766710|PMID:17408640) Ensembl
Ensembl
MGI
PMID:17408640 GO_REF:0000107 MGI:3766710 NCBI chr22:4,453,715...4,510,934
Ensembl chr22:4,453,715...4,511,037
JBrowse link
G IFNG interferon gamma involved_in ISO (MGI:6304699|PMID:29061364) ARUK-UCL PMID:29061364 MGI:6304699 NCBI chr10:10,406,866...10,411,698
Ensembl chr10:10,406,867...10,411,698
JBrowse link
G IGF1 insulin like growth factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:41,203,320...41,275,964
Ensembl chr15:41,202,518...41,275,794
JBrowse link
G INS insulin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr18:46,324,047...46,324,933
Ensembl chr18:46,324,041...46,325,122
JBrowse link
G INSR insulin receptor involved_in ISO (PMID:7693131) BHF-UCL PMID:7693131 NCBI chr20:52,017,261...52,136,061
Ensembl chr20:52,021,887...52,136,046
JBrowse link
G MIF macrophage migration inhibitory factor ISO RGD PMID:11086030 RGD:1642010
G MLXIPL MLX interacting protein like involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:6,617,398...6,652,201
Ensembl chr 6:6,633,231...6,652,198
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:22842522 RGD:7207891 NCBI chr13:25,200,772...25,205,309
Ensembl chr13:25,200,577...25,205,309
JBrowse link
G P2RX7 purinergic receptor P2X 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:7,928,863...7,983,956
Ensembl chr26:7,940,985...7,983,740
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO PMID:11069105 UniProt PMID:11069105 RGD:8554193 NCBI chr 4:68,579,061...68,614,548
Ensembl chr 4:68,579,037...68,611,841
JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in ISO PMID:11069105 UniProt PMID:11069105 RGD:8554193 NCBI chr 5:52,809,792...52,855,072
Ensembl chr 5:52,815,609...52,876,609
JBrowse link
G PRXL2C peroxiredoxin like 2C involved_in ISO (PMID:29901208) UniProt PMID:29901208 NCBI chr 1:70,199,278...70,209,026
Ensembl chr 1:70,199,357...70,208,534
JBrowse link
G PSEN1 presenilin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532
JBrowse link
G SLC4A4 solute carrier family 4 member 4 acts_upstream_of ISO (PMID:21976511)
(MGI:5295108|PMID:21976511)
ARUK-UCL PMID:21976511 MGI:5295108 NCBI chr13:60,375,215...60,670,664
Ensembl chr13:60,328,136...60,666,728
JBrowse link
G ZBTB20 zinc finger and BTB domain containing 20 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr33:18,860,824...19,277,691
Ensembl chr33:18,529,132...18,759,058
JBrowse link
positive regulation of hydrogen peroxide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NNT nicotinamide nucleotide transhydrogenase ISO RGD PMID:24722990 RGD:13513981 NCBI chr 4:66,348,222...66,437,889
Ensembl chr 4:66,349,318...66,442,841
JBrowse link
G SNCA synuclein alpha involved_in ISO (PMID:23507046) ParkinsonsUK-UCL PMID:23507046 NCBI chr32:12,915,871...13,079,338
Ensembl chr32:12,916,215...13,060,383
JBrowse link
positive regulation of lipid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABHD5 abhydrolase domain containing 5, lysophosphatidic acid acyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:2,584,813...2,619,204
Ensembl chr23:2,586,678...2,737,583
JBrowse link
G ADORA1 adenosine A1 receptor ISO RGD PMID:9597368 RGD:1625365 NCBI chr 7:44,819...74,217
Ensembl chr 7:44,820...73,051
JBrowse link
G ANGPTL3 angiopoietin like 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:47,524,390...47,532,931
Ensembl chr 5:47,525,365...47,532,899
JBrowse link
G APOA2 apolipoprotein A2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr38:21,263,641...21,265,887
Ensembl chr38:21,262,789...21,265,887
JBrowse link
G APOA5 apolipoprotein A5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:16,774,117...16,777,535
Ensembl chr 5:16,774,501...16,777,768
JBrowse link
G IL1B interleukin 1 beta involved_in ISO (MGI:3828398|PMID:16865359) BHF-UCL PMID:16865359 MGI:3828398 NCBI chr17:37,019,329...37,033,388
Ensembl chr17:37,019,329...37,024,458
JBrowse link
G LOC102155886 serum amyloid A protein-like involved_in ISS AgBase
AgBase
GO_REF:0000024 NCBI chr21:40,629,290...40,633,680
Ensembl chr21:40,629,290...40,683,641
JBrowse link
G PRKCE protein kinase C epsilon involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4367975|PMID:19401415) Ensembl
Ensembl
MGI
PMID:19401415 GO_REF:0000107 MGI:4367975 NCBI chr10:47,976,929...48,464,614
Ensembl chr10:47,976,768...48,535,296
JBrowse link
G SCT secretin involved_in ISS UniProt
UniProt
GO_REF:0000024
G SCTR secretin receptor involved_in ISO (MGI:5562611|PMID:24273196)
(MGI:6259360|PMID:30449620)
UniProt PMID:24273196 PMID:30449620 MGI:5562611 MGI:6259360 NCBI chr19:30,505,059...30,577,371
Ensembl chr19:30,526,055...30,577,075
JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADRB2 adrenoceptor beta 2 involved_in ISS GO_Central
GO_Central
GO_REF:0000024 NCBI chr 4:60,048,502...60,050,447
Ensembl chr 4:59,941,517...60,050,298
JBrowse link
G HTT huntingtin involved_in ISO (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chr 3:61,076,934...61,221,462
Ensembl chr 3:61,079,904...61,330,290
JBrowse link
G SESN2 sestrin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5444071|PMID:22958918) Ensembl
Ensembl
MGI
PMID:22958918 GO_REF:0000107 MGI:5444071 NCBI chr 2:72,151,464...72,168,861
Ensembl chr 2:72,151,868...72,168,492
JBrowse link
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:25332431) MGI
Ensembl
Ensembl
PMID:25332431 GO_REF:0000107 NCBI chr 1:94,997,240...95,062,424
Ensembl chr 1:94,997,290...95,064,468
JBrowse link
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:25332431) MGI
Ensembl
Ensembl
PMID:25332431 GO_REF:0000107 NCBI chr 8:50,291,797...50,401,202
Ensembl chr 8:50,271,010...50,401,313
JBrowse link
positive regulation of low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA2 ATP binding cassette subfamily A member 2 acts_upstream_of ISO (PMID:21810484) ARUK-UCL PMID:21810484 NCBI chr 9:48,610,906...48,630,932
Ensembl chr 9:48,613,996...48,629,857
JBrowse link
G APOE apolipoprotein E involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:110,525,717...110,528,534
Ensembl chr 1:110,525,722...110,528,440
JBrowse link
G PCSK9 proprotein convertase subtilisin/kexin type 9 involved_in ISO (PMID:22848640) BHF-UCL PMID:22848640 NCBI chr 5:54,197,211...54,210,724 JBrowse link
positive regulation of lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LDLR low density lipoprotein receptor involved_in ISO (MGI:5902678|PMID:22383525) ARUK-UCL PMID:22383525 MGI:5902678 NCBI chr20:50,115,175...50,152,443
Ensembl chr20:50,048,736...50,152,355
JBrowse link
G LRP1 LDL receptor related protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:1,260,256...1,341,705
Ensembl chr10:1,260,719...1,352,271
JBrowse link
G LRP2 LDL receptor related protein 2 involved_in ISO (PMID:9228033) ARUK-UCL PMID:9228033 NCBI chr36:13,910,450...14,107,081
Ensembl chr36:13,911,865...14,107,546
JBrowse link
G MARCHF2 membrane associated ring-CH-type finger 2 involved_in ISO (PMID:29573664) UniProt PMID:29573664 NCBI chr20:52,976,503...52,990,694
Ensembl chr20:52,980,002...52,990,470
JBrowse link
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BNIP3 BCL2 interacting protein 3 acts_upstream_of_or_within ISO (PMID:19273585) MGI PMID:19273585 NCBI chr28:40,037,681...40,050,499
Ensembl chr28:40,038,643...40,049,797
JBrowse link
G BNIP3L BCL2 interacting protein 3 like acts_upstream_of_or_within ISO (PMID:19273585) MGI PMID:19273585 NCBI chr25:31,133,512...31,149,750
Ensembl chr25:31,136,168...31,148,905
JBrowse link
G C11H9orf72 chromosome 11 C9orf72 homolog involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:45,664,942...45,688,777
Ensembl chr11:45,666,293...45,688,780
JBrowse link
G DCN decorin acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23798385) MGI
Ensembl
Ensembl
PMID:23798385 GO_REF:0000107 NCBI chr15:31,833,492...31,887,699
Ensembl chr15:31,833,746...31,877,417
JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (MGI:4457987|PMID:20453062)
(PMID:20453062)
MGI PMID:20453062 MGI:4457987 NCBI chr 1:36,835,775...36,977,653
Ensembl chr 1:36,870,594...36,931,847
JBrowse link
G GNAI3 G protein subunit alpha i3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:42,275,060...42,315,545
Ensembl chr 6:42,276,998...42,315,533
JBrowse link
G GPSM1 G protein signaling modulator 1 involved_in ISO (PMID:12642577) UniProt PMID:12642577 NCBI chr 9:49,124,828...49,152,079
Ensembl chr 9:49,118,627...49,152,208
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3847365|PMID:19273585) Ensembl
Ensembl
MGI
PMID:19273585 GO_REF:0000107 MGI:3847365 NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692
JBrowse link
G HMOX1 heme oxygenase 1 acts_upstream_of_or_within ISO (MGI:5430482|PMID:20705711) MGI PMID:20705711 MGI:5430482 NCBI chr10:28,744,404...28,751,544
Ensembl chr10:28,743,795...28,751,773
JBrowse link
G IKBKG inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in ISO (MGI:5819337|PMID:23778976) ParkinsonsUK-UCL PMID:23778976 MGI:5819337 NCBI chr  X:122,232,052...122,253,499
Ensembl chr  X:122,235,878...122,250,562
JBrowse link
G IL4 interleukin 4 involved_in IBA
ISS
(PMID:21873635) GO_Central
GO_Central
UniProt
UniProt
PMID:21873635 GO_REF:0000024 NCBI chr11:20,972,693...20,981,539
Ensembl chr11:20,972,690...20,981,534
JBrowse link
G KDR kinase insert domain receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23798385) MGI
Ensembl
Ensembl
PMID:23798385 GO_REF:0000107 NCBI chr13:47,442,861...47,484,574
Ensembl chr13:47,442,764...47,485,042
JBrowse link
G LACRT lacritin involved_in ISO (PMID:23640897) FlyBase PMID:23640897 NCBI chr27:735,639...738,355 JBrowse link
G LARP1 La ribonucleoprotein 1, translational regulator involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr 4:54,991,528...55,045,976
Ensembl chr 4:54,994,227...55,017,098
JBrowse link
G MAP3K7 mitogen-activated protein kinase kinase kinase 7 involved_in ISO (MGI:5819337|PMID:23778976) ParkinsonsUK-UCL PMID:23778976 MGI:5819337 NCBI chr12:49,669,849...49,740,039
Ensembl chr12:49,672,389...49,739,850
JBrowse link
G PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 Ensembl chr 5:16,414,798...16,447,660 JBrowse link
G PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO (MGI:4361989|PMID:17476689) MGI PMID:17476689 MGI:4361989 NCBI chr  X:42,072,495...42,077,741
Ensembl chr  X:42,073,457...42,077,543
JBrowse link
G PINK1 PTEN induced kinase 1 involved_in ISO (PMID:20871098) ParkinsonsUK-UCL PMID:20871098 NCBI chr 2:78,276,091...78,293,761
Ensembl chr 2:78,277,077...78,294,123
JBrowse link
G RAB12 RAB12, member RAS oncogene family involved_in ISO (MGI:5574288|PMID:23357852) UniProt PMID:23357852 MGI:5574288 NCBI chr 7:74,752,697...74,791,872 JBrowse link
G RUFY4 RUN and FYVE domain containing 4 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr37:24,809,365...24,830,254
Ensembl chr37:24,809,359...24,829,724
JBrowse link
G SCOC short coiled-coil protein involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr19:2,451,678...2,494,052
Ensembl chr19:2,452,707...2,494,034
JBrowse link
G SESN1 sestrin 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr12:65,958,995...66,057,369
Ensembl chr12:65,960,066...66,057,035
JBrowse link
G SESN2 sestrin 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:72,151,464...72,168,861
Ensembl chr 2:72,151,868...72,168,492
JBrowse link
G SESN3 sestrin 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr21:5,827,957...5,899,540
Ensembl chr21:5,777,780...5,892,805
JBrowse link
G SIRT1 sirtuin 1 involved_in ISO (PMID:18296641)
(MGI:3776699|PMID:18296641), (MGI:4940431|PMID:21189328)
UniProt PMID:18296641 PMID:21189328 MGI:3776699 MGI:4940431 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:34,783,947...34,792,204
Ensembl chr 2:34,784,232...34,789,072
JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:113,759,419...113,788,490
Ensembl chr 1:113,759,423...113,788,447
JBrowse link
G TBK1 TANK binding kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:7,169,664...7,208,890
Ensembl chr10:7,168,007...7,208,899
JBrowse link
G TRIM13 tripartite motif containing 13 involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr22:1,877,672...1,893,097
Ensembl chr22:1,871,181...1,910,055
JBrowse link
G TSC1 TSC complex subunit 1 ISO RGD PMID:23435171 RGD:10448950 NCBI chr 9:51,409,307...51,459,546
Ensembl chr 9:51,425,937...51,454,677
JBrowse link
G TSC2 TSC complex subunit 2 acts_upstream_of_or_within
involved_in
ISO (MGI:4457987|PMID:20453062)
(MGI:5819337|PMID:23778976)
(PMID:23778976)
MGI
ParkinsonsUK-UCL
PMID:20453062 PMID:23778976 MGI:4457987 MGI:5819337 NCBI chr 6:38,865,509...38,898,977
Ensembl chr 6:38,865,507...38,898,960
JBrowse link
G WAC WW domain containing adaptor with coiled-coil involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr 2:17,504,949...17,588,037 JBrowse link
positive regulation of membrane protein ectodomain proteolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAM8 ADAM metallopeptidase domain 8 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr28:40,853,665...40,865,604
Ensembl chr28:40,855,509...40,863,747
JBrowse link
G ADAM9 ADAM metallopeptidase domain 9 involved_in ISO (MGI:1326990|PMID:9857183) BHF-UCL PMID:9857183 MGI:1326990 NCBI chr16:26,413,345...26,551,293
Ensembl chr16:26,414,583...26,551,122
JBrowse link
G ADRA2A adrenoceptor alpha 2A involved_in ISO (PMID:17655843) BHF-UCL PMID:17655843 NCBI chr28:22,366,989...22,392,163
Ensembl chr28:22,367,780...22,370,684
JBrowse link
G APOE apolipoprotein E involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:110,525,717...110,528,534
Ensembl chr 1:110,525,722...110,528,440
JBrowse link
G APP amyloid beta precursor protein involved_in ISO (PMID:25015123) ARUK-UCL PMID:25015123 NCBI chr31:21,351,207...21,614,466
Ensembl chr31:21,351,207...21,614,337
JBrowse link
G GPLD1 glycosylphosphatidylinositol specific phospholipase D1 involved_in ISO (PMID:17720976)
(MGI:5447609|PMID:17720976)
UniProt PMID:17720976 MGI:5447609 NCBI chr35:22,495,001...22,556,264
Ensembl chr35:22,495,073...22,554,105
JBrowse link
G IFNG interferon gamma involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:10,406,866...10,411,698
Ensembl chr10:10,406,867...10,411,698
JBrowse link
G IL1B interleukin 1 beta involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:37,019,329...37,033,388
Ensembl chr17:37,019,329...37,024,458
JBrowse link
G NRDC nardilysin convertase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:9,413,878...9,505,355
Ensembl chr15:9,413,295...9,505,448
JBrowse link
G PACSIN3 protein kinase C and casein kinase substrate in neurons 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr18:42,378,692...42,399,225
Ensembl chr18:42,389,951...42,398,924
JBrowse link
G RGMA repulsive guidance molecule BMP co-receptor a acts_upstream_of_or_within ISO (MGI:5702499|PMID:26651291) MGI PMID:26651291 MGI:5702499 NCBI chr 3:47,044,342...47,089,923
Ensembl chr 3:47,061,910...47,089,294
JBrowse link
G SH3D19 SH3 domain containing 19 involved_in ISO (PMID:15280379) BHF-UCL PMID:15280379 NCBI chr15:49,076,194...49,244,691
Ensembl chr15:49,081,803...49,168,312
JBrowse link
G SNX33 sorting nexin 33 involved_in ISO (PMID:18353773), (PMID:18419754) UniProt PMID:18353773 PMID:18419754 NCBI chr30:38,441,311...38,453,477
Ensembl chr30:38,441,305...38,450,161
JBrowse link
G SNX9 sorting nexin 9 involved_in ISO (PMID:18353773) UniProt PMID:18353773 NCBI chr 1:47,346,214...47,457,417
Ensembl chr 1:47,343,668...47,455,937
JBrowse link
G TNF tumor necrosis factor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:1,074,561...1,076,425
Ensembl chr12:1,074,552...1,076,425
JBrowse link
G TNFRSF1B TNF receptor superfamily member 1B involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:84,140,179...84,151,219
Ensembl chr 2:84,141,911...84,157,191
JBrowse link
positive regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIN28B lin-28 homolog B involved_in ISO (PMID:18951094) CACAO PMID:18951094 NCBI chr12:62,403,831...62,529,435
Ensembl chr12:62,403,333...62,524,838
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20547861) UniProt PMID:20547861 NCBI chr10:56,478,771...56,520,992
Ensembl chr10:56,478,680...56,520,967
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:4,972,369...4,984,218
Ensembl chr15:4,972,956...4,980,371
JBrowse link
G ZSWIM8 zinc finger SWIM-type containing 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:24,220,505...24,234,933
Ensembl chr 4:24,220,797...24,234,933
JBrowse link
positive regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRSF1 G-rich RNA sequence binding factor 1 involved_in ISO (PMID:29967381) UniProt PMID:29967381 NCBI chr13:60,088,198...60,102,292
Ensembl chr13:60,089,429...60,100,099
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:19509288), (PMID:29967381) UniProt PMID:19509288 PMID:29967381 NCBI chr10:56,478,771...56,520,992
Ensembl chr10:56,478,680...56,520,967
JBrowse link
G SUPV3L1 Suv3 like RNA helicase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:20,313,902...20,342,375
Ensembl chr 4:20,313,814...20,340,882
JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:30217973) UniProt PMID:30217973 NCBI chr18:42,903,815...43,073,918
Ensembl chr18:42,932,513...43,072,827
JBrowse link
G CERS1 ceramide synthase 1 involved_in ISO (PMID:22922758) UniProt PMID:22922758 NCBI chr20:44,216,568...44,231,820 JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase ISO RGD PMID:28608965 RGD:13432560 NCBI chr 1:49,886,887...51,201,930
Ensembl chr 1:49,889,005...51,201,764
JBrowse link
G SLC25A4 solute carrier family 25 member 4 involved_in ISO (MGI:6407583|PMID:31618756) UniProt PMID:31618756 MGI:6407583 NCBI chr16:45,454,660...45,458,606
Ensembl chr16:45,411,810...45,542,162
JBrowse link
G SLC25A5 solute carrier family 25 member 5 involved_in ISO (MGI:6407583|PMID:31618756) UniProt PMID:31618756 MGI:6407583 NCBI chr  X:91,523,649...91,526,447
Ensembl chr  X:91,523,643...91,526,479
JBrowse link
G VDAC1 voltage dependent anion channel 1 involved_in ISO (PMID:32047033) UniProt PMID:32047033 NCBI chr11:22,197,814...22,212,924
Ensembl chr11:22,197,949...22,212,924
JBrowse link
G VPS13D vacuolar protein sorting 13 homolog D involved_in ISO (PMID:29307555) UniProt PMID:29307555 NCBI chr 2:83,898,620...84,132,453
Ensembl chr 2:83,901,018...84,132,529
JBrowse link
positive regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:22977175) BHF-UCL PMID:22977175 NCBI chr 2:58,038,456...58,138,364
Ensembl chr 2:58,038,483...58,137,622
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G CNOT8 CCR4-NOT transcription complex subunit 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:54,935,476...54,956,000
Ensembl chr 4:54,938,961...54,954,416
JBrowse link
G GTPBP1 GTP binding protein 1 involved_in ISO PMID:21515746 UniProt PMID:21515746 RGD:8553842 NCBI chr10:26,074,969...26,103,520
Ensembl chr10:26,075,169...26,100,511
JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chr 2:76,073,553...76,108,763
Ensembl chr 2:76,077,022...76,105,433
JBrowse link
G KHSRP KH-type splicing regulatory protein involved_in ISO (PMID:16126846) UniProt PMID:16126846 NCBI chr20:53,746,656...53,755,388
Ensembl chr20:53,745,742...53,756,870
JBrowse link
G MOV10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:24726324) UniProt PMID:24726324 NCBI chr17:62,872,607...62,896,208
Ensembl chr17:62,872,756...62,896,395
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:16410805) RGD
UniProt
PMID:737213 PMID:16410805 RGD:11554176 NCBI chr10:56,478,771...56,520,992
Ensembl chr10:56,478,680...56,520,967
JBrowse link
G PRR5L proline rich 5 like involved_in ISO (PMID:21964062) UniProt PMID:21964062 NCBI chr18:31,708,888...31,849,365
Ensembl chr18:31,706,546...31,849,491
JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671)
(MGI:6154479|PMID:25026077)
UniProt PMID:25026077 PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 MGI:6154479 NCBI chr 7:25,265,836...25,312,417
Ensembl chr 7:25,233,235...25,305,174
JBrowse link
G TTC5 tetratricopeptide repeat domain 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:17,653,008...17,670,231
Ensembl chr15:17,638,462...17,670,575
JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:44,234,411...44,271,129
Ensembl chr20:44,236,264...44,270,916
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:4,972,369...4,984,218
Ensembl chr15:4,972,956...4,980,371
JBrowse link
G ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr16:9,598,339...9,660,540
Ensembl chr16:9,598,405...9,664,569
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in ISO (MGI:5795825|PMID:15634918) UniProt PMID:15634918 MGI:5795825 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 8:42,663,287...42,668,665
Ensembl chr 8:42,664,223...42,668,514
JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in IEA UniProt
UniProt
GO_REF:0000117 NCBI chr10:45,746,952...45,751,268
Ensembl chr10:45,748,936...45,751,250
JBrowse link
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO2 argonaute RISC catalytic component 2 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chr13:35,169,243...35,230,252
Ensembl chr13:35,180,912...35,268,577
JBrowse link
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:21278420) UniProt PMID:21278420 NCBI chr 2:58,038,456...58,138,364
Ensembl chr 2:58,038,483...58,137,622
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr28:6,523,894...6,724,010
Ensembl chr28:6,529,212...6,723,454
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in ISO (PMID:14731398) UniProt PMID:14731398 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G NANOS1 nanos C2HC-type zinc finger 1 involved_in ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chr28:29,285,422...29,287,236 JBrowse link
G NANOS2 nanos C2HC-type zinc finger 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:109,716,634...109,717,701
Ensembl chr 1:109,716,699...109,717,115
JBrowse link
G NANOS3 nanos C2HC-type zinc finger 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 Ensembl chr20:48,591,081...48,591,755 JBrowse link
G NANOS3 nanos C2HC-type zinc finger 3 involved_in ISO (PMID:24736845) BHF-UCL PMID:24736845
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chr13:2,563,698...2,580,610
Ensembl chr13:2,564,065...2,580,368
JBrowse link
G TNRC6B trinucleotide repeat containing adaptor 6B involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:24,852,168...25,094,400
Ensembl chr10:24,813,854...25,094,393
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C involved_in ISO (PMID:21984185) UniProt PMID:21984185 NCBI chr 9:3,018,599...3,122,664
Ensembl chr 9:3,020,533...3,171,471
JBrowse link
G TOB1 transducer of ERBB2, 1 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chr 9:26,736,805...26,741,119
Ensembl chr 9:26,736,675...26,740,177
Ensembl chr 9:26,736,675...26,740,177
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in ISO (MGI:5487524|PMID:21278420)
(PMID:12748283)
UniProt PMID:12748283 PMID:21278420 MGI:5487524 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in ISO PMID:12748283 UniProt PMID:12748283 RGD:11344945 NCBI chr 8:42,663,287...42,668,665
Ensembl chr 8:42,664,223...42,668,514
JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in ISO (MGI:5320815|PMID:22367205) UniProt PMID:22367205 MGI:5320815 NCBI chr10:45,746,952...45,751,268
Ensembl chr10:45,748,936...45,751,250
JBrowse link
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO2 argonaute RISC catalytic component 2 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chr13:35,169,243...35,230,252
Ensembl chr13:35,180,912...35,268,577
JBrowse link
G BTG2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (PMID:18337750) MGI PMID:18337750 NCBI chr38:70,921...75,149
Ensembl chr38:70,452...72,976
JBrowse link
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:23644599)
(PMID:21278420)
BHF-UCL
UniProt
PMID:21278420 PMID:23644599 NCBI chr 2:58,038,456...58,138,364
Ensembl chr 2:58,038,483...58,137,622
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr28:6,523,894...6,724,010
Ensembl chr28:6,529,212...6,723,454
JBrowse link
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) UniProt PMID:32354837 NCBI chr26:24,355,326...24,403,306
Ensembl chr26:24,355,826...24,402,827
JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chr13:2,563,698...2,580,610
Ensembl chr13:2,564,065...2,580,368
JBrowse link
G POLR2G RNA polymerase II subunit G involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr18:53,916,431...53,919,724
Ensembl chr18:53,916,435...53,919,549
JBrowse link
G TNRC6A trinucleotide repeat containing adaptor 6A involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 6:21,247,492...21,454,424
Ensembl chr 6:21,248,948...21,420,719
JBrowse link
G TNRC6B trinucleotide repeat containing adaptor 6B involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr10:24,852,168...25,094,400
Ensembl chr10:24,813,854...25,094,393
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 9:3,018,599...3,122,664
Ensembl chr 9:3,020,533...3,171,471
JBrowse link
G TOB1 transducer of ERBB2, 1 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chr 9:26,736,805...26,741,119
Ensembl chr 9:26,736,675...26,740,177
Ensembl chr 9:26,736,675...26,740,177
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in ISO (MGI:5487524|PMID:21278420)
(PMID:10330172)
(MGI:5795819|PMID:20595389)
UniProt PMID:10330172 PMID:20595389 PMID:21278420 MGI:5487524 MGI:5795819 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
positive regulation of phospholipid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOC2 apolipoprotein C2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:110,504,806...110,506,986
Ensembl chr 1:110,504,815...110,506,961
JBrowse link
positive regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG2 BAG cochaperone 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:24,353,549...24,369,190
Ensembl chr12:24,353,663...24,368,350
JBrowse link
G DAB2IP DAB2 interacting protein involved_in ISO (PMID:20080667) UniProt PMID:20080667 NCBI chr 9:60,725,887...60,918,242
Ensembl chr 9:60,726,809...60,918,139
JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:18,085,865...18,098,868
Ensembl chr24:18,084,725...18,097,157
JBrowse link
G ECSCR endothelial cell surface expressed chemotaxis and apoptosis regulator involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(PMID:19416853)
GO_Central
GO_Central
MGI
PMID:19416853 PMID:21873635 NCBI chr 2:34,763,814...34,773,491 JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:50,187,579...50,417,188
Ensembl chr15:50,189,240...50,417,195
JBrowse link
G FMR1 FMRP translational regulator 1 involved_in ISO (MGI:5770038|PMID:24709664) UniProt PMID:24709664 MGI:5770038 NCBI chr  X:116,249,079...116,287,008
Ensembl chr  X:116,249,142...116,321,439
JBrowse link
G KCNE2 potassium voltage-gated channel subfamily E regulatory subunit 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr31:29,777,154...29,777,839
Ensembl chr31:29,581,658...29,777,525
JBrowse link
G LOC100687259 26S proteasome regulatory subunit 10B involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr32:35,814,756...35,816,311 JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:18,222,367...18,224,015
Ensembl chr 6:18,222,515...18,224,014
JBrowse link
G OSBPL7 oxysterol binding protein like 7 involved_in ISO (PMID:21669198) BHF-UCL PMID:21669198 NCBI chr 9:24,139,641...24,156,692
Ensembl chr 9:24,139,630...24,154,924
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:49,886,887...51,201,930
Ensembl chr 1:49,889,005...51,201,764
JBrowse link
G PSMC1 proteasome 26S subunit, ATPase 1 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr 8:61,272,363...61,285,886
Ensembl chr 8:61,272,363...61,285,886
JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr18:16,845,593...16,859,010
Ensembl chr18:16,845,594...16,858,911
JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr18:42,212,083...42,218,958 JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr 1:113,548,351...113,557,725
Ensembl chr 1:113,548,373...113,557,630
JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr 9:11,783,422...11,787,624
Ensembl chr 9:11,783,466...11,787,617
JBrowse link
G PSMC6 proteasome 26S subunit, ATPase 6 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr 8:28,914,302...28,947,854 JBrowse link
G RNF40 ring finger protein 40 ISO RGD PMID:12121982 RGD:633892 NCBI chr 6:17,402,022...17,414,494
Ensembl chr 6:17,402,908...17,414,362
JBrowse link
G TMTC3 transmembrane O-mannosyltransferase targeting cadherins 3 involved_in ISO (PMID:21603654) UniProt PMID:21603654 NCBI chr15:29,280,423...29,350,449
Ensembl chr15:29,298,078...29,350,553
JBrowse link
G XBP1 X-box binding protein 1 acts_upstream_of_or_within ISO (MGI:4946566|PMID:21317886) MGI PMID:21317886 MGI:4946566 NCBI chr26:22,162,675...22,168,149
Ensembl chr26:22,163,222...22,168,105
JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 acts_upstream_of_or_within ISO (MGI:3589701|PMID:15937334) MGI PMID:15937334 MGI:3589701 NCBI chr 8:72,317,399...72,335,686
Ensembl chr 8:72,317,869...72,335,193
JBrowse link
G ANKIB1 ankyrin repeat and IBR domain containing 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:17,835,582...18,007,077
Ensembl chr14:17,837,117...18,004,106
JBrowse link
G ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr30:35,927,277...36,040,168
Ensembl chr30:35,927,233...36,108,381
JBrowse link
G ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr30:36,058,932...36,109,206
Ensembl chr30:35,927,233...36,108,381
JBrowse link
G ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr20:40,178,560...40,230,870
Ensembl chr20:40,179,168...40,230,880
JBrowse link
G ATG7 autophagy related 7 acts_upstream_of_or_within ISO (MGI:5465208|PMID:23152632) MGI PMID:23152632 MGI:5465208 NCBI chr20:6,916,354...7,154,849
Ensembl chr20:6,916,515...7,154,800
JBrowse link
G AURKA aurora kinase A acts_upstream_of_or_within ISO (MGI:3697244|PMID:17060449) MGI PMID:17060449 MGI:3697244 NCBI chr24:41,585,483...41,604,875
Ensembl chr24:41,585,518...41,604,791
JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within ISO (MGI:3628833|PMID:16601693) MGI PMID:16601693 MGI:3628833 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343
JBrowse link
G BAG2 BAG cochaperone 2 NOT|involved_in ISO (MGI:6148635|PMID:19228967) ARUK-UCL PMID:19228967 MGI:6148635 NCBI chr12:24,353,549...24,369,190
Ensembl chr12:24,353,663...24,368,350
JBrowse link
G BBS7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:22302990) MGI
Ensembl
Ensembl
PMID:22302990 GO_REF:0000107 NCBI chr19:18,280,487...18,319,128
Ensembl chr19:18,280,520...18,315,825
JBrowse link
G CBFA2T3 CBFA2/RUNX1 partner transcriptional co-repressor 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:64,432,291...64,518,905
Ensembl chr 5:64,431,843...64,519,528
JBrowse link
G CHFR checkpoint with forkhead and ring finger domains acts_upstream_of_or_within ISO (MGI:5310666|PMID:22285184) MGI PMID:22285184 MGI:5310666 NCBI chr26:251,369...324,699
Ensembl chr26:294,909...324,696
JBrowse link
G CLU clusterin involved_in IBA
ISS
(PMID:21873635) GO_Central
GO_Central
UniProt
UniProt
PMID:21873635 GO_REF:0000024 NCBI chr25:29,982,811...29,999,565
Ensembl chr25:29,982,811...29,999,563
JBrowse link
G COP1 COP1 E3 ubiquitin ligase involved_in ISO (PMID:19805145) UniProt PMID:19805145 NCBI chr 7:23,320,483...23,565,093
Ensembl chr 7:23,277,209...23,563,397
JBrowse link
G CSNK1A1 casein kinase 1 alpha 1 involved_in ISO (PMID:11955436)
(PMID:19364825)
ParkinsonsUK-UCL
FlyBase
PMID:11955436 PMID:19364825 NCBI chr 4:59,435,530...59,485,591
Ensembl chr 4:59,435,764...59,483,475
JBrowse link
G CSNK1D casein kinase 1 delta involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 9:83,395...110,309
Ensembl chr 9:73,215...110,269
JBrowse link
G CSNK1E casein kinase 1 epsilon involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr10:26,386,646...26,412,429
Ensembl chr10:26,393,033...26,411,624
JBrowse link
G DAB2 DAB adaptor protein 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:69,625,874...69,648,349
Ensembl chr 4:69,625,527...69,648,321
JBrowse link
G DDA1 DET1 and DDB1 associated 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr20:45,440,046...45,448,564
Ensembl chr20:45,439,682...45,448,525
JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr24:18,085,865...18,098,868
Ensembl chr24:18,084,725...18,097,157
JBrowse link
G DET1 DET1 partner of COP1 E3 ubiquitin ligase involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 3:51,725,931...51,765,487
Ensembl chr 3:51,725,926...51,775,185
JBrowse link
G DNAJB2 DnaJ heat shock protein family (Hsp40) member B2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr37:25,826,496...25,834,011
Ensembl chr37:25,827,713...25,833,144
JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:56,507,803...56,519,382
Ensembl chr 5:56,507,739...56,519,491
JBrowse link
G FBXO22 F-box protein 22 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3840749|PMID:19319192)
GO_Central
GO_Central
MGI
PMID:19319192 PMID:21873635 MGI:3840749 NCBI chr30:40,100,768...40,127,708
Ensembl chr30:40,101,540...40,189,159
JBrowse link
G GABARAP GABA type A receptor-associated protein involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:32,207,879...32,209,976
Ensembl chr 5:32,207,887...32,209,908
JBrowse link
G GBA glucosylceramidase beta involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:42,317,704...42,322,285
Ensembl chr 7:42,317,862...42,322,864
JBrowse link
G GCLC glutamate-cysteine ligase catalytic subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3695876|PMID:17189825) Ensembl
Ensembl
MGI
PMID:17189825 GO_REF:0000107 MGI:3695876 NCBI chr12:20,999,815...21,047,779
Ensembl chr12:21,000,792...21,047,779
JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in ISO (PMID:25897075) ARUK-UCL PMID:25897075 NCBI chr 1:112,129,116...112,138,714
Ensembl chr 1:112,103,825...112,138,559
JBrowse link
G GSK3B glycogen synthase kinase 3 beta acts_upstream_of_or_within
involved_in
ISO (MGI:5437589|PMID:22660580)
(PMID:19364825)
(PMID:25897075)
MGI
FlyBase
ARUK-UCL
PMID:19364825 PMID:22660580 PMID:25897075 MGI:5437589 NCBI chr33:23,458,369...23,659,878
Ensembl chr33:23,463,767...23,659,666
JBrowse link
G HSP70 heat shock protein 70 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr12:1,285,282...1,287,670 JBrowse link
G HSPBP1 HSPA (Hsp70) binding protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:102,389,438...102,402,578
Ensembl chr 1:102,389,608...102,402,380
JBrowse link
G IL33 interleukin 33 acts_upstream_of_or_within ISO (MGI:5437589|PMID:22660580) MGI PMID:22660580 MGI:5437589 NCBI chr11:27,219,878...27,256,723
Ensembl chr11:27,219,878...27,256,721
JBrowse link
G KLHL40 kelch like family member 40 involved_in ISO (MGI:5700633|PMID:25940086) UniProt PMID:25940086 MGI:5700633 NCBI chr23:11,812,268...11,820,426
Ensembl chr23:11,813,550...11,820,420
JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr27:13,282,824...13,420,917
Ensembl chr27:13,283,756...13,420,870
JBrowse link
G MDM2 MDM2 proto-oncogene involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chr10:10,936,288...10,963,118
Ensembl chr10:10,893,719...10,962,596
JBrowse link
G NKD2 NKD inhibitor of WNT signaling pathway 2 involved_in ISO (PMID:20177058) BHF-UCL PMID:20177058 NCBI chr34:11,447,895...11,468,067
Ensembl chr34:11,447,888...11,459,509
JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:25818168), (PMID:27323397)
(MGI:5897550|PMID:21804542)
UniProt PMID:21804542 PMID:25818168 PMID:27323397 MGI:5897550 NCBI chr 1:108,307,039...108,315,732
Ensembl chr 1:108,307,042...108,316,495
JBrowse link
G NUB1 negative regulator of ubiquitin like proteins 1 involved_in ISO (PMID:16707496) UniProt PMID:16707496 NCBI chr16:15,355,237...15,382,284
Ensembl chr16:15,352,476...15,381,095
JBrowse link
G PABIR1 PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1 involved_in ISO (PMID:27588481) UniProt PMID:27588481 NCBI chr 1:88,580,008...88,587,037 JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 involved_in ISO (MGI:5487503|PMID:22406621) UniProt PMID:22406621 MGI:5487503 NCBI chr30:32,116,363...32,232,530
Ensembl chr30:32,119,311...32,228,945
JBrowse link
G PLK1 polo like kinase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:22,165,338...22,176,847
Ensembl chr 6:22,165,338...22,176,441
JBrowse link
G PLK2 polo like kinase 2 ISO RGD PMID:18723513 RGD:7241135 NCBI chr 2:45,359,865...45,365,496
Ensembl chr 2:45,360,374...45,367,441
JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr27:11,327,086...11,437,799
Ensembl chr27:11,426,647...11,437,303
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA
IBA
(PMID:21873635) Ensembl
Ensembl
GO_Central
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 1:49,886,887...51,201,930
Ensembl chr 1:49,889,005...51,201,764
JBrowse link
G PSEN1 presenilin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532
JBrowse link
G PSEN2 presenilin 2 involved_in ISO (MGI:4887523|PMID:20208556) BHF-UCL PMID:20208556 MGI:4887523 NCBI chr 7:38,147,157...38,163,023
Ensembl chr 7:38,147,173...38,166,722
JBrowse link
G PSMD10 proteasome 26S subunit, non-ATPase 10 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:81,625,288...81,632,175
Ensembl chr  X:81,625,141...81,632,129
JBrowse link
G RACK1 receptor for activated C kinase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:426,734...431,087
Ensembl chr11:426,215...431,089
JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein involved_in ISO (PMID:26296656) CAFA PMID:26296656 NCBI chr20:49,244,330...49,250,058
Ensembl chr20:49,241,358...49,250,039
JBrowse link
G RBX1 ring-box 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:24,265,733...24,280,253
Ensembl chr10:24,266,408...24,280,235
JBrowse link
G RCHY1 ring finger and CHY zinc finger domain containing 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr32:67,136...94,053
Ensembl chr32:67,509...93,987
JBrowse link
G RNF14 ring finger protein 14 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:36,908,617...36,934,896
Ensembl chr 2:36,911,612...36,929,172
JBrowse link
G RNF144A ring finger protein 144A involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr17:4,522,095...4,637,741
Ensembl chr17:4,519,904...4,662,833
JBrowse link
G RNF144B ring finger protein 144B involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:17,056,189...17,226,254
Ensembl chr35:17,150,835...17,238,566
JBrowse link
G RNF180 ring finger protein 180 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3819024|PMID:18363970), (MGI:5505713|PMID:23926250)
GO_Central
GO_Central
MGI
PMID:18363970 PMID:21873635 PMID:23926250 MGI:3819024 MGI:5505713 NCBI chr 2:50,166,987...50,353,694
Ensembl chr 2:50,197,137...50,352,946
JBrowse link
G RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr13:2,142,126...2,170,530
Ensembl chr13:2,142,876...2,169,944
JBrowse link
G RNF19B ring finger protein 19B involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:68,413,020...68,435,216
Ensembl chr 2:68,413,108...68,434,526
JBrowse link
G RNF217 ring finger protein 217 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:63,902,985...64,094,491
Ensembl chr 1:63,962,515...64,085,011
JBrowse link
G SH3RF1 SH3 domain containing ring finger 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr25:20,025,920...20,208,470
Ensembl chr25:20,015,915...20,205,946
JBrowse link
G SH3RF2 SH3 domain containing ring finger 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 2:40,380,313...40,514,211
Ensembl chr 2:40,380,218...40,510,853
JBrowse link
G SH3RF3 SH3 domain containing ring finger 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr10:34,374,376...34,730,548
Ensembl chr10:34,376,326...34,730,657
JBrowse link
G SIRT2 sirtuin 2 involved_in ISO (MGI:5574427|PMID:24681946) UniProt PMID:24681946 MGI:5574427 NCBI chr 1:114,224,922...114,235,041
Ensembl chr 1:114,224,900...114,234,583
JBrowse link
G SMAD7 SMAD family member 7 involved_in ISO (PMID:11278251) BHF-UCL PMID:11278251 NCBI chr 7:79,706,485...79,734,673
Ensembl chr 7:79,706,705...79,734,749
JBrowse link
G SOCS5 suppressor of cytokine signaling 5 involved_in IEA Ensembl
InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr10:48,916,446...48,977,183
Ensembl chr10:48,972,842...48,974,452
JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:11146632) HGNC-UCL PMID:11146632 NCBI chr 6:39,893,492...39,895,385
Ensembl chr 6:39,893,670...39,897,573
JBrowse link
G SUMO1 small ubiquitin like modifier 1 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chr37:11,199,937...11,229,743
Ensembl chr37:11,200,590...11,229,754
JBrowse link
G SUMO2 small ubiquitin like modifier 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:5,298,315...5,311,184
Ensembl chr 9:5,298,340...5,311,184
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:15053879) BHF-UCL PMID:15053879 NCBI chr  X:55,693,091...55,764,268
Ensembl chr  X:55,693,194...55,763,683
JBrowse link
G TRIB1 tribbles pseudokinase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr13:23,337,788...23,346,304
Ensembl chr13:23,337,788...23,346,304
JBrowse link
G TRIB2 tribbles pseudokinase 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr17:9,225,598...9,251,826
Ensembl chr17:9,226,017...9,249,821
JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chr29:307,502...359,058
Ensembl chr29:307,525...357,962
JBrowse link
G USP5 ubiquitin specific peptidase 5 involved_in ISO (PMID:19098288) UniProt PMID:19098288 NCBI chr27:38,158,850...38,172,689
Ensembl chr27:38,158,834...38,172,071
JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:51,636,986...51,651,749
Ensembl chr11:51,637,411...51,651,714
JBrowse link
G ZER1 zyg-11 related cell cycle regulator involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:54,842,607...54,873,336
Ensembl chr 9:54,842,317...54,871,717
JBrowse link
G ZFAND2A zinc finger AN1-type containing 2A acts_upstream_of_or_within ISO (MGI:3663213|PMID:16973439) MGI PMID:16973439 MGI:3663213 NCBI chr 6:15,725,903...15,736,450
Ensembl chr 6:15,726,076...15,883,451
JBrowse link
G ZYG11B zyg-11 family member B, cell cycle regulator involved_in ISO (PMID:31273098) UniProt PMID:31273098 NCBI chr15:8,595,200...8,681,668
Ensembl chr15:8,597,738...8,681,364
JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLK3 polo like kinase 3 involved_in ISO (PMID:20889502) UniProt PMID:20889502 NCBI chr15:15,519,042...15,523,960
Ensembl chr15:15,519,026...15,524,230
JBrowse link
G SIRT2 sirtuin 2 involved_in ISO (PMID:24681946) UniProt PMID:24681946 NCBI chr 1:114,224,922...114,235,041
Ensembl chr 1:114,224,900...114,234,583
JBrowse link
positive regulation of protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:3618985|PMID:16478791)
(PMID:12952940)
(PMID:21873635)
MGI
GO_Central
GO_Central
PMID:12952940 PMID:16478791 PMID:21873635 MGI:3618985 NCBI chr 3:252,052...380,506
Ensembl chr 3:253,081...322,993
JBrowse link
G APC2 APC regulator of WNT signaling pathway 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr20:57,380,472...57,395,249
Ensembl chr20:57,380,460...57,395,226
JBrowse link
G AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 8:47,798,946...47,819,364
Ensembl chr 8:47,801,895...47,819,318
JBrowse link
G ASB11 ankyrin repeat and SOCS box containing 11 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:11,542,466...11,567,633
Ensembl chr  X:11,542,466...11,582,983
JBrowse link
G ASB5 ankyrin repeat and SOCS box containing 5 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr16:53,299,076...53,351,339
Ensembl chr16:53,298,516...53,349,421
JBrowse link
G ASB9 ankyrin repeat and SOCS box containing 9 acts_upstream_of_or_within ISO (PMID:17148442) MGI PMID:17148442 NCBI chr  X:11,505,941...11,533,335
Ensembl chr  X:11,505,941...11,533,135
JBrowse link
G ATG4B autophagy related 4B cysteine peptidase ISO RGD PMID:16874114 RGD:2301238 NCBI chr25:51,494,316...51,518,683
Ensembl chr25:51,504,537...51,517,659
JBrowse link
G ATG7 autophagy related 7 involved_in ISO (PMID:20543840) UniProt PMID:20543840 NCBI chr20:6,916,354...7,154,849
Ensembl chr20:6,916,515...7,154,800
JBrowse link
G AXIN1 axin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343
JBrowse link
G C4BPA complement component 4 binding protein alpha involved_in ISO (PMID:22333221) BHF-UCL PMID:22333221 NCBI chr 7:6,239,036...6,268,934
Ensembl chr 7:6,241,102...6,268,910
JBrowse link
G C4BPB complement component 4 binding protein beta involved_in ISO (PMID:22333221) BHF-UCL PMID:22333221 NCBI chr 7:6,224,962...6,236,925
Ensembl chr 7:6,225,188...6,236,918
JBrowse link
G CBLB Cbl proto-oncogene B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3038342|PMID:14973438) MGI
Ensembl
Ensembl
PMID:14973438 GO_REF:0000107 MGI:3038342 NCBI chr33:11,255,453...11,665,755
Ensembl chr33:11,199,863...11,530,810
JBrowse link
G CDKN1B cyclin dependent kinase inhibitor 1B acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:19056892) MGI
Ensembl
Ensembl
PMID:19056892 GO_REF:0000107 NCBI chr27:33,609,154...33,613,558
Ensembl chr27:33,611,760...33,612,906
JBrowse link
G CREBRF CREB3 regulatory factor involved_in ISO (PMID:18391022) UniProt PMID:18391022 NCBI chr 4:39,308,429...39,366,031
Ensembl chr 4:39,313,512...39,365,953
JBrowse link
G CSNK2A1 casein kinase 2 alpha 1 involved_in ISO (PMID:20625391) UniProt PMID:20625391 NCBI chr24:20,333,593...20,390,341 JBrowse link
G CUL4B cullin 4B acts_upstream_of_or_within ISO (MGI:3820198|PMID:18602923) MGI PMID:18602923 MGI:3820198 NCBI chr  X:92,489,981...92,538,199
Ensembl chr  X:92,491,114...92,537,672
JBrowse link
G DAB2IP DAB2 interacting protein involved_in ISO (MGI:4453088|PMID:19948740) UniProt PMID:19948740 MGI:4453088 NCBI chr 9:60,725,887...60,918,242
Ensembl chr 9:60,726,809...60,918,139
JBrowse link
G DACT1 dishevelled binding antagonist of beta catenin 1 acts_upstream_of_or_within ISO (PMID:16446366) MGI PMID:16446366 NCBI chr 8:33,950,016...33,959,671
Ensembl chr 8:33,949,926...33,958,449
JBrowse link
G DDB1 damage specific DNA binding protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr18:55,064,720...55,097,623
Ensembl chr18:55,064,729...55,097,627
JBrowse link
G DTL denticleless E3 ubiquitin protein ligase homolog involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:10,323,842...10,368,529
Ensembl chr 7:10,323,559...10,369,560
JBrowse link
G EGLN2 egl-9 family hypoxia inducible factor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:112,992,779...113,001,836
Ensembl chr 1:112,992,780...113,000,677
JBrowse link
G FOXO1 forkhead box O1 involved_in ISO (PMID:20543840) UniProt PMID:20543840 NCBI chr25:603,433...706,961
Ensembl chr25:603,543...702,825
JBrowse link
G FZR1 fizzy and cell division cycle 20 related 1 involved_in ISO (PMID:11459825) UniProt PMID:11459825 NCBI chr20:55,866,893...55,877,077
Ensembl chr20:55,869,693...55,876,936
JBrowse link
G GGA1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5432614|PMID:22836275) MGI
Ensembl
Ensembl
PMID:22836275 GO_REF:0000107 MGI:5432614 NCBI chr10:26,972,763...26,991,772
Ensembl chr10:26,972,760...26,991,689
JBrowse link
G GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5432614|PMID:22836275) Ensembl
Ensembl
MGI
PMID:22836275 GO_REF:0000107 MGI:5432614 NCBI chr 9:5,235,377...5,250,982
Ensembl chr 9:5,235,025...5,249,361
JBrowse link
G GJA1 gap junction protein alpha 1 ISO RGD PMID:12952975 RGD:1582696 NCBI chr 1:60,941,772...60,944,694
Ensembl chr 1:60,929,097...60,942,936
JBrowse link
G GPC3 glypican 3 acts_upstream_of_or_within ISO (MGI:3790551|PMID:18477453) MGI PMID:18477453 MGI:3790551 NCBI chr  X:104,313,426...104,751,215
Ensembl chr  X:104,313,591...104,751,756
JBrowse link
G GSK3B glycogen synthase kinase 3 beta ISO RGD PMID:17686886 RGD:10045647 NCBI chr33:23,458,369...23,659,878
Ensembl chr33:23,463,767...23,659,666
JBrowse link
G HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr12:62,231,642...62,337,242
Ensembl chr12:62,227,078...62,337,183
JBrowse link
G HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr18:6,644,102...7,084,159
Ensembl chr18:6,647,658...7,084,567
JBrowse link
G HECW2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr37:5,850,518...6,213,353
Ensembl chr37:5,856,513...6,213,820
JBrowse link
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:45,234,666...45,409,641
Ensembl chr  X:45,234,322...45,410,043
JBrowse link
G IER3 immediate early response 3 acts_upstream_of_or_within ISO (MGI:4437986|PMID:19096392) MGI PMID:19096392 MGI:4437986 NCBI chr12:529,002...530,328
Ensembl chr12:529,339...530,232
JBrowse link
G ITCH itchy E3 ubiquitin protein ligase acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:3038342|PMID:14973438)
(PMID:21873635)
MGI
GO_Central
GO_Central
PMID:14973438 PMID:21873635 MGI:3038342 NCBI chr24:23,476,619...23,630,574
Ensembl chr24:23,476,736...23,627,469
JBrowse link
G LPCAT1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within ISO (MGI:4460850|PMID:20018880) MGI PMID:20018880 MGI:4460850 NCBI chr34:11,162,715...11,195,380
Ensembl chr34:11,164,615...11,193,681
JBrowse link
G MAPK15 mitogen-activated protein kinase 15 ISO Human Estrogen Receptor alpha RGD PMID:12917323 RGD:2304230 NCBI chr13:37,317,061...37,322,792
Ensembl chr13:37,316,424...37,322,792
JBrowse link
G MYLIP myosin regulatory light chain interacting protein involved_in ISO (MGI:3849777|PMID:19520913) BHF-UCL PMID:19520913 MGI:3849777 NCBI chr35:15,257,633...15,276,771
Ensembl chr35:15,256,885...15,275,424
JBrowse link
G NDFIP1 Nedd4 family interacting protein 1 acts_upstream_of_or_within ISO (MGI:3694584|PMID:17137798) MGI PMID:17137798 MGI:3694584 NCBI chr 2:36,978,148...37,065,247
Ensembl chr 2:36,961,024...37,064,303
JBrowse link
G NDUFA13 NADH:ubiquinone oxidoreductase subunit A13 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:43,721,568...43,730,607
Ensembl chr20:43,721,640...43,730,295
JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(PMID:14973438)
(MGI:2176314|PMID:11748237)
GO_Central
GO_Central
Ensembl
MGI
PMID:11748237 PMID:14973438 PMID:21873635 GO_REF:0000107 MGI:2176314 NCBI chr30:21,123,333...21,229,907
Ensembl chr30:21,126,043...21,229,870
JBrowse link
G NEDD4L NEDD4 like E3 ubiquitin protein ligase involved_in ISO
IBA
(PMID:21873635) RGD
GO_Central
GO_Central
PMID:18174164 PMID:21873635 RGD:6893331 NCBI chr 1:17,629,163...17,858,471
Ensembl chr 1:17,633,591...17,950,072
JBrowse link
G NKD1 NKD inhibitor of WNT signaling pathway 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:64,720,059...64,806,868
Ensembl chr 2:64,722,243...64,807,875
JBrowse link
G NSF N-ethylmaleimide sensitive factor, vesicle fusing ATPase involved_in ISO (PMID:22045810) CACAO PMID:22045810 NCBI chr 9:9,927,149...10,072,656
Ensembl chr 9:9,927,068...10,071,272
JBrowse link
G OAZ1 ornithine decarboxylase antizyme 1 involved_in ISO (MGI:5574513|PMID:24967154)
(PMID:17900240)
UniProt PMID:17900240 PMID:24967154 MGI:5574513 NCBI chr20:56,769,317...56,770,921
Ensembl chr20:56,769,319...56,770,930
JBrowse link
G OAZ2 ornithine decarboxylase antizyme 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr30:29,122,556...29,126,513
Ensembl chr30:29,122,556...29,126,512
JBrowse link
G OAZ3 ornithine decarboxylase antizyme 3 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr17:60,789,541...60,792,954
Ensembl chr17:60,786,963...60,792,954
JBrowse link
G PLK2 polo like kinase 2 involved_in ISO (PMID:23983262) ParkinsonsUK-UCL PMID:23983262 NCBI chr 2:45,359,865...45,365,496
Ensembl chr 2:45,360,374...45,367,441
JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr23:32,441,130...32,628,588
Ensembl chr23:32,471,921...32,626,548
JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in ISO (PMID:22072966) CACAO PMID:22072966 NCBI chr20:2,704,716...2,776,518
Ensembl chr20:2,704,752...2,826,636
JBrowse link
G RHBDD1 rhomboid domain containing 1 involved_in ISO (PMID:18953687)
(PMID:22624035)
UniProt PMID:18953687 PMID:22624035 NCBI chr25:39,719,474...39,844,634
Ensembl chr25:39,719,872...39,842,289
JBrowse link
G RHBDD3 rhomboid domain containing 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5492204|PMID:23610400) MGI
Ensembl
Ensembl
PMID:23610400 GO_REF:0000107 MGI:5492204 NCBI chr26:22,573,260...22,578,921
Ensembl chr26:22,573,316...22,577,683
JBrowse link
G RILP Rab interacting lysosomal protein involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:45,793,324...45,797,159
Ensembl chr 9:45,793,623...45,796,877
JBrowse link
G RNF41 ring finger protein 41 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:512,650...521,293
Ensembl chr10:514,635...542,395
JBrowse link
G SEC22B SEC22 homolog B, vesicle trafficking protein involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:57,094,038...57,115,891
Ensembl chr17:57,053,218...57,115,886
JBrowse link
G SGSM3 small G protein signaling modulator 3 involved_in ISO (MGI:3689782|PMID:15709751) UniProt PMID:15709751 MGI:3689782 NCBI chr10:24,759,714...24,803,333
Ensembl chr10:24,760,162...24,769,478
JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 6:10,385,781...10,498,071
Ensembl chr 6:10,385,779...10,494,922
JBrowse link
G SNF8 SNF8 subunit of ESCRT-II involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:25,151,992...25,162,105
Ensembl chr 9:25,152,011...25,162,023
JBrowse link
G SNX1 sorting nexin 1 ISO RGD PMID:11110793 RGD:68866 NCBI chr30:28,597,928...28,642,847
Ensembl chr30:28,597,989...28,642,535
JBrowse link
G SORL1 sortilin related receptor 1 involved_in ISO (PMID:24523320) Alzheimers_University_of_Toronto PMID:24523320 NCBI chr 5:12,493,750...12,650,530
Ensembl chr 5:12,431,377...12,650,784
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in ISO (MGI:4887291|PMID:20802155) UniProt PMID:20802155 MGI:4887291 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:3839710|PMID:19047045) MGI PMID:19047045 MGI:3839710 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
G STX5 syntaxin 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr18:53,862,432...53,883,091
Ensembl chr18:53,862,541...53,882,536
JBrowse link
G TIPARP TCDD inducible poly(ADP-ribose) polymerase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23275542) MGI
Ensembl
Ensembl
PMID:23275542 GO_REF:0000107 NCBI chr23:50,253,645...50,279,615
Ensembl chr23:50,249,327...50,280,144
JBrowse link
G TNF tumor necrosis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,074,561...1,076,425
Ensembl chr12:1,074,552...1,076,425
JBrowse link
G TNFAIP3 TNF alpha induced protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:30,247,432...30,262,992
Ensembl chr 1:30,251,059...30,261,001
JBrowse link
G TNFSF12 tumor necrosis factor (ligand) superfamily, member 12 acts_upstream_of_or_within ISO (PMID:17389268) MGI PMID:17389268 NCBI chr 5:32,473,543...32,481,596
Ensembl chr 5:32,473,083...32,481,121
JBrowse link
G TRIM32 tripartite motif containing 32 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3610252|PMID:16243356) MGI
Ensembl
Ensembl
PMID:16243356 GO_REF:0000107 MGI:3610252 NCBI chr11:70,453,130...70,465,030
Ensembl chr11:70,462,007...70,463,974
JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:51,636,986...51,651,749
Ensembl chr11:51,637,411...51,651,714
JBrowse link
G VIP vasoactive intestinal peptide involved_in IDA
IEA
(PMID:9603988) BHF-UCL
Ensembl
UniProt
BHF-UCL
UniProt
PMID:9603988 GO_REF:0000107 GO_REF:0000117 NCBI chr 1:42,941,655...42,950,160
Ensembl chr 1:42,941,224...42,950,700
JBrowse link
G VPS28 VPS28 subunit of ESCRT-I involved_in ISO (PMID:11916981) UniProt PMID:11916981 NCBI chr13:37,841,524...37,845,954
Ensembl chr13:37,841,518...37,846,339
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:12952940) MGI
Ensembl
Ensembl
PMID:12952940 GO_REF:0000107 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
G WWP1 WW domain containing E3 ubiquitin protein ligase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr29:32,523,719...32,620,507
Ensembl chr29:32,533,619...32,625,787
JBrowse link
G WWP2 WW domain containing E3 ubiquitin protein ligase 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 5:79,806,424...79,926,846
Ensembl chr 5:79,806,425...79,957,830
JBrowse link
G ZNF268 zinc finger protein 268 involved_in ISO (PMID:23091055) UniProt PMID:23091055 NCBI chr26:42,480...81,811
Ensembl chr26:45,630...108,235
JBrowse link
positive regulation of protein catabolic process in the vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD81 CD81 molecule involved_in ISO (PMID:25635054) BHF-UCL PMID:25635054 NCBI chr18:46,466,484...46,474,236
Ensembl chr18:46,466,499...46,473,868
JBrowse link
positive regulation of proteolysis involved in cellular protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP5IF1 ATP synthase inhibitory factor subunit 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:72,188,562...72,191,344
Ensembl chr 2:72,188,266...72,191,326
JBrowse link
G CTSC cathepsin C involved_in ISO PMID:18307834 ParkinsonsUK-UCL PMID:18307834 RGD:8661625 NCBI chr21:11,659,296...11,692,957
Ensembl chr21:11,659,292...11,692,816
JBrowse link
G GBA glucosylceramidase beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:42,317,704...42,322,285
Ensembl chr 7:42,317,862...42,322,864
JBrowse link
G LAPTM5 lysosomal protein transmembrane 5 involved_in ISO (MGI:5444793|PMID:22949502) ARUK-UCL PMID:22949502 MGI:5444793 NCBI chr 2:70,188,382...70,215,361
Ensembl chr 2:70,152,739...70,333,073
JBrowse link
G RGN regucalcin ISO RGD PMID:1513338 RGD:9590188 NCBI chr  X:40,697,292...40,715,491
Ensembl chr  X:40,698,768...40,715,490
JBrowse link
positive regulation of receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTX3L deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr33:25,676,686...25,684,270
Ensembl chr33:25,677,076...25,684,175
JBrowse link
G GIT1 GIT ArfGAP 1 ISO RGD PMID:18523162 RGD:13513208 NCBI chr 9:43,676,707...43,686,566
Ensembl chr 9:43,677,899...43,693,177
JBrowse link
G HAMP hepcidin antimicrobial peptide involved_in ISO (PMID:15514116) BHF-UCL PMID:15514116 NCBI chr 1:117,305,531...117,306,587
Ensembl chr 1:117,305,411...117,306,619
JBrowse link
G ITCH itchy E3 ubiquitin protein ligase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr24:23,476,619...23,630,574
Ensembl chr24:23,476,736...23,627,469
JBrowse link
G LAPTM5 lysosomal protein transmembrane 5 involved_in ISO (MGI:4460047|PMID:20519653) ARUK-UCL PMID:20519653 MGI:4460047 NCBI chr 2:70,188,382...70,215,361
Ensembl chr 2:70,152,739...70,333,073
JBrowse link
G PTPN1 protein tyrosine phosphatase non-receptor type 1 involved_in ISO (PMID:22045810) CACAO PMID:22045810 NCBI chr24:36,936,469...37,010,929
Ensembl chr24:36,936,298...37,003,720
JBrowse link
positive regulation of sphingomyelin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENPP7 ectonucleotide pyrophosphatase/phosphodiesterase 7 involved_in ISO (MGI:4947032|PMID:21177474) UniProt PMID:21177474 MGI:4947032 NCBI chr 9:1,887,093...1,894,728
Ensembl chr 9:1,887,201...1,897,473
JBrowse link
G PRKCD protein kinase C delta involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:36,723,491...36,751,982
Ensembl chr20:36,723,809...36,752,191
JBrowse link
positive regulation of transcription factor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXW8 F-box and WD repeat domain containing 8 involved_in ISO (MGI:6148490|PMID:29153991) UniProt PMID:29153991 MGI:6148490 NCBI chr26:13,520,605...13,640,975
Ensembl chr26:13,412,189...13,638,258
JBrowse link
G MAPK8 mitogen-activated protein kinase 8 involved_in ISO (MGI:6148490|PMID:29153991) UniProt PMID:29153991 MGI:6148490 NCBI chr28:323,361...410,367
Ensembl chr28:368,513...406,401
JBrowse link
G MAPK9 mitogen-activated protein kinase 9 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:1,443,528...1,480,501
Ensembl chr11:1,443,547...1,478,119
JBrowse link
G</