ONTOLOGY REPORT - ANNOTATIONS |
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Term: | embryonic pattern specification |
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Accession: | GO:0009880
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browse the term
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Definition: | The process that results in the patterns of cell differentiation that will arise in an embryo. |
Synonyms: | broad_synonym: | embryonic pattern biosynthesis; embryonic pattern formation |
| related_synonym: | ventral/lateral system |
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GViewer not supported for the selected species.
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Bmp7 |
bone morphogenetic protein 7 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:10049573) |
Ensembl MGI |
PMID:10049573 |
GO_REF:0000107 |
NCBI chrNW_004936530:71,965...143,940
Ensembl chrNW_004936530:71,920...143,940
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Disp1 |
dispatched RND transporter family member 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:12372301) |
Ensembl MGI |
PMID:12372301 |
GO_REF:0000107 |
NCBI chrNW_004936526:111,742...303,381
Ensembl chrNW_004936526:86,854...303,290
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Dop1b |
DOP1 leucine zipper like protein B |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936500:6,351,529...6,451,632
Ensembl chrNW_004936500:6,351,340...6,451,622
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Efnb1 |
ephrin B1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:15037550) |
Ensembl MGI |
PMID:15037550 |
GO_REF:0000107 |
NCBI chrNW_004936777:434,729...447,778
Ensembl chrNW_004936777:434,692...447,780
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Erbb4 |
erb-b2 receptor tyrosine kinase 4 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936586:4,065,767...5,100,690
Ensembl chrNW_004936586:4,066,498...5,100,035
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Fgf10 |
fibroblast growth factor 10 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:17522155) (PMID:16618415) |
Ensembl MGI |
PMID:16618415 PMID:17522155 |
GO_REF:0000107 |
NCBI chrNW_004936480:18,114,231...18,195,884
Ensembl chrNW_004936480:18,114,204...18,195,898
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Fgfr2 |
fibroblast growth factor receptor 2 |
acts_upstream_of_or_within |
ISO |
(PMID:16618415) |
MGI |
PMID:16618415 |
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NCBI chrNW_004936486:10,506,680...10,606,272
Ensembl chrNW_004936486:10,507,097...10,602,019
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Ihh |
Indian hedgehog signaling molecule |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:18582859) |
Ensembl MGI |
PMID:18582859 |
GO_REF:0000107 |
NCBI chrNW_004936569:1,474,693...1,480,562
Ensembl chrNW_004936569:1,474,665...1,480,568
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Lhx1 |
LIM homeobox 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:10529425) |
Ensembl MGI |
PMID:10529425 |
GO_REF:0000107 |
NCBI chrNW_004936490:1,324,378...1,332,177
Ensembl chrNW_004936490:1,324,370...1,331,505
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Lrp6 |
LDL receptor related protein 6 |
acts_upstream_of_or_within |
ISO |
(PMID:19653321) |
MGI |
PMID:19653321 |
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NCBI chrNW_004936587:5,065,200...5,143,029
Ensembl chrNW_004936587:4,978,043...5,140,191
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Meis1 |
Meis homeobox 1 |
involved_in |
IEA |
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TreeGrafter |
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GO_REF:0000118 |
NCBI chrNW_004936491:11,079,574...11,216,451
Ensembl chrNW_004936491:11,079,455...11,217,388
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Meis2 |
Meis homeobox 2 |
involved_in |
IEA |
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TreeGrafter |
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GO_REF:0000118 |
NCBI chrNW_004936471:800,510...1,006,054
Ensembl chrNW_004936471:798,739...1,006,047
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Meis3 |
Meis homeobox 3 |
involved_in |
IEA |
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TreeGrafter |
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GO_REF:0000118 |
NCBI chrNW_004936664:1,095,815...1,105,751
Ensembl chrNW_004936664:1,095,772...1,105,808
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Nanog |
Nanog homeobox |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936892:181,834...187,691
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Nodal |
nodal growth differentiation factor |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:11311163) |
Ensembl MGI |
PMID:11311163 |
GO_REF:0000107 |
NCBI chrNW_004936521:8,171,146...8,178,802
Ensembl chrNW_004936521:8,171,146...8,178,705
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Noto |
notochord homeobox |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:15550757) |
Ensembl MGI |
PMID:15550757 |
GO_REF:0000107 |
NCBI chrNW_004936491:16,987,797...16,996,423
Ensembl chrNW_004936491:16,987,642...16,996,579
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Ooep |
oocyte expressed protein |
acts_upstream_of_or_within |
ISO |
(PMID:18191828) |
MGI |
PMID:18191828 |
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NCBI chrNW_004937318:2,623...3,622
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Pgap1 |
post-GPI attachment to proteins inositol deacylase 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:10529425) |
Ensembl MGI |
PMID:10529425 |
GO_REF:0000107 |
NCBI chrNW_004936506:2,224,598...2,297,022
Ensembl chrNW_004936506:2,224,572...2,294,739
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Ripply1 |
ripply transcriptional repressor 1 |
involved_in |
IEA |
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TreeGrafter |
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GO_REF:0000118 |
NCBI chrNW_004936499:7,845,180...7,848,954
Ensembl chrNW_004936499:7,846,041...7,848,400
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Ripply2 |
ripply transcriptional repressor 2 |
involved_in |
IEA |
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TreeGrafter |
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GO_REF:0000118 |
NCBI chrNW_004936510:7,101,148...7,106,184
Ensembl chrNW_004936510:7,101,148...7,105,185
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RIPPLY3 |
ripply transcriptional repressor 3 |
involved_in |
IEA |
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TreeGrafter |
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GO_REF:0000118 |
Ensembl chrNW_004936500:5,758,776...5,769,218
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Satb2 |
SATB homeobox 2 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:16751105) |
Ensembl MGI |
PMID:16751105 |
GO_REF:0000107 |
NCBI chrNW_004936506:34,968...206,432
Ensembl chrNW_004936506:34,962...206,490
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Smad2 |
SMAD family member 2 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:15183723) |
Ensembl MGI |
PMID:15183723 |
GO_REF:0000107 |
NCBI chrNW_004936497:14,723,199...14,812,160
Ensembl chrNW_004936497:14,723,199...14,801,697
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Smad3 |
SMAD family member 3 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:15183723) |
Ensembl MGI |
PMID:15183723 |
GO_REF:0000107 |
NCBI chrNW_004936471:27,080,662...27,185,861
Ensembl chrNW_004936471:27,080,575...27,189,793
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Tfap2a |
transcription factor AP-2 alpha |
acts_upstream_of_or_within |
ISO |
(PMID:17984226) |
MGI |
PMID:17984226 |
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NCBI chrNW_004936534:2,481,804...2,518,573
Ensembl chrNW_004936534:2,481,806...2,499,317
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Zbtb16 |
zinc finger and BTB domain containing 16 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:10835630) |
Ensembl MGI |
PMID:10835630 |
GO_REF:0000107 |
NCBI chrNW_004936612:389,877...570,595
Ensembl chrNW_004936612:395,177...570,595
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Zic3 |
Zic family member 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936513:9,780,895...9,792,865
Ensembl chrNW_004936513:9,786,709...9,793,077
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Cripto |
cripto, EGF-CFC family member |
acts_upstream_of_or_within |
ISO |
(PMID:9790191) |
MGI |
PMID:9790191 |
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NCBI chrNW_004936596:451,483...453,892
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Frs2 |
fibroblast growth factor receptor substrate 2 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:15870281) |
Ensembl MGI |
PMID:15870281 |
GO_REF:0000107 |
NCBI chrNW_004936545:7,286,018...7,407,623
Ensembl chrNW_004936545:7,396,023...7,407,637
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Fzd5 |
frizzled class receptor 5 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936631:3,909,046...3,915,939
Ensembl chrNW_004936631:3,911,693...3,915,560
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Tasor |
transcription activation suppressor |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936473:7,053,797...7,098,608
Ensembl chrNW_004936473:7,055,462...7,098,358
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Tbx3 |
T-box transcription factor 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936558:7,230,361...7,243,651
Ensembl chrNW_004936558:7,230,668...7,244,361
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Tcf7l1 |
transcription factor 7 like 1 |
acts_upstream_of_or_within |
ISO |
(PMID:14668413) |
MGI |
PMID:14668413 |
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NCBI chrNW_004936712:1,848,478...1,962,644
Ensembl chrNW_004936712:1,848,464...1,962,650
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Wnt5a |
Wnt family member 5A |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159
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Chrd |
chordin |
involved_in |
ISO |
(PMID:11118896) |
MGI |
PMID:11118896 |
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NCBI chrNW_004936578:5,498,473...5,507,195
Ensembl chrNW_004936578:5,498,887...5,507,198
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Chrdl1 |
chordin like 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936499:4,474,899...4,587,563
Ensembl chrNW_004936499:4,474,884...4,587,501
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Cited1 |
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 |
involved_in |
ISO |
PMID:15843474 |
UniProt |
PMID:15843474 |
RGD:8554075 |
NCBI chrNW_004936762:1,387,354...1,392,955
Ensembl chrNW_004936762:1,387,346...1,391,967
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Cobl |
cordon-bleu WH2 repeat protein |
involved_in |
ISO |
(MGI:76306|PMID:7586755) |
BHF-UCL |
PMID:7586755 |
MGI:76306 |
NCBI chrNW_004936686:621,502...872,824
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Ctnnb1 |
catenin beta 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:9230313) |
Ensembl MGI |
PMID:9230313 |
GO_REF:0000107 |
NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293
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Frat1 |
FRAT regulator of WNT signaling pathway 1 |
acts_upstream_of_or_within |
ISO |
(PMID:10534617) |
MGI |
PMID:10534617 |
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NCBI chrNW_004936636:2,326,891...2,330,321
Ensembl chrNW_004936636:2,328,500...2,329,333
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Fzd5 |
frizzled class receptor 5 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936631:3,909,046...3,915,939
Ensembl chrNW_004936631:3,911,693...3,915,560
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Stil |
STIL centriolar assembly protein |
acts_upstream_of_or_within |
ISO |
(PMID:10385121) |
MGI |
PMID:10385121 |
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NCBI chrNW_004936474:28,079,114...28,131,214
Ensembl chrNW_004936474:28,079,492...28,131,198
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Wnt1 |
Wnt family member 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936512:6,781,001...6,785,358
Ensembl chrNW_004936512:6,780,882...6,785,358
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Wnt7a |
Wnt family member 7A |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936898:45,903...70,313
Ensembl chrNW_004936898:45,115...70,326
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C2cd3 |
C2 domain containing 3 centriole elongation regulator |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:19004860) |
Ensembl MGI |
PMID:19004860 |
GO_REF:0000107 |
NCBI chrNW_004936498:3,099,419...3,242,334
Ensembl chrNW_004936498:3,099,396...3,242,335
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Ptch1 |
patched 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936626:4,241,993...4,301,919
Ensembl chrNW_004936626:4,241,908...4,309,476
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Pld6 |
phospholipase D family member 6 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936741:867,501...872,899
Ensembl chrNW_004936741:869,252...872,910
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Tdrd5 |
tudor domain containing 5 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936481:9,418,512...9,485,388
Ensembl chrNW_004936481:9,418,641...9,485,386
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Tdrkh |
tudor and KH domain containing |
involved_in |
IEA |
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TreeGrafter |
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GO_REF:0000118 |
NCBI chrNW_004936580:1,968,001...1,982,073
Ensembl chrNW_004936580:1,967,639...1,982,134
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Epb41l5 |
erythrocyte membrane protein band 4.1 like 5 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:18794329) |
Ensembl MGI |
PMID:18794329 |
GO_REF:0000107 |
NCBI chrNW_004936469:50,329,564...50,443,532
Ensembl chrNW_004936469:50,329,409...50,443,626
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Foxa2 |
forkhead box A2 |
acts_upstream_of_or_within |
ISO |
(PMID:11291865) |
MGI |
PMID:11291865 |
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NCBI chrNW_004936620:2,966,341...2,969,349
Ensembl chrNW_004936620:2,966,341...2,969,349
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Gdf3 |
growth differentiation factor 3 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:16368929) |
Ensembl MGI |
PMID:16368929 |
GO_REF:0000107 |
NCBI chrNW_004937847:8,179...16,783
Ensembl chrNW_004937847:7,456...16,783
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Kdm6a |
lysine demethylase 6A |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:22949634) |
Ensembl MGI |
PMID:22949634 |
GO_REF:0000107 |
NCBI chrNW_004936502:10,980,303...11,196,711
Ensembl chrNW_004936502:10,980,118...11,196,163
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Lhx1 |
LIM homeobox 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:11291865) |
Ensembl MGI |
PMID:11291865 |
GO_REF:0000107 |
NCBI chrNW_004936490:1,324,378...1,332,177
Ensembl chrNW_004936490:1,324,370...1,331,505
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Mesp1 |
mesoderm posterior bHLH transcription factor 1 |
involved_in |
IEA |
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TreeGrafter |
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GO_REF:0000118 |
NCBI chrNW_004936483:15,533,264...15,534,576
Ensembl chrNW_004936483:15,533,522...15,534,576
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Mesp2 |
mesoderm posterior bHLH transcription factor 2 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:20346937) |
TreeGrafter MGI |
PMID:20346937 |
GO_REF:0000118 |
NCBI chrNW_004936483:15,555,084...15,557,060
Ensembl chrNW_004936483:15,555,084...15,557,060
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Nrarp |
NOTCH regulated ankyrin repeat protein |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:21998026) |
Ensembl MGI |
PMID:21998026 |
GO_REF:0000107 |
NCBI chrNW_004936669:702,825...705,009
Ensembl chrNW_004936669:702,853...703,197
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Otx2 |
orthodenticle homeobox 2 |
acts_upstream_of_or_within |
ISO |
(PMID:11291865) |
MGI |
PMID:11291865 |
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NCBI chrNW_004936495:1,433,124...1,449,409
Ensembl chrNW_004936495:1,432,598...1,442,918
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Ripply1 |
ripply transcriptional repressor 1 |
acts_upstream_of_or_within |
ISO |
(PMID:20346937) |
MGI |
PMID:20346937 |
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NCBI chrNW_004936499:7,845,180...7,848,954
Ensembl chrNW_004936499:7,846,041...7,848,400
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Ripply2 |
ripply transcriptional repressor 2 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:20346937) |
Ensembl MGI |
PMID:20346937 |
GO_REF:0000107 |
NCBI chrNW_004936510:7,101,148...7,106,184
Ensembl chrNW_004936510:7,101,148...7,105,185
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Smad4 |
SMAD family member 4 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:9420335) |
Ensembl MGI |
PMID:9420335 |
GO_REF:0000107 |
NCBI chrNW_004936497:12,242,869...12,278,012
Ensembl chrNW_004936497:12,249,140...12,278,123
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Tbx6 |
T-box transcription factor 6 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:20346937) |
Ensembl MGI |
PMID:20346937 |
GO_REF:0000107 |
NCBI chrNW_004936501:12,402,709...12,407,571
Ensembl chrNW_004936501:12,402,724...12,407,571
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Tmed2 |
transmembrane p24 trafficking protein 2 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:20178780) |
Ensembl MGI |
PMID:20178780 |
GO_REF:0000107 |
NCBI chrNW_004936558:1,223,114...1,258,699
Ensembl chrNW_004936558:1,223,114...1,231,479
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Cobl |
cordon-bleu WH2 repeat protein |
involved_in |
ISO |
(MGI:76306|PMID:7586755) |
BHF-UCL |
PMID:7586755 |
MGI:76306 |
NCBI chrNW_004936686:621,502...872,824
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Dll1 |
delta like canonical Notch ligand 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:14960495) |
Ensembl MGI |
PMID:14960495 |
GO_REF:0000107 |
NCBI chrNW_004937098:212,704...220,589
Ensembl chrNW_004937098:213,227...220,427
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Meox1 |
mesenchyme homeobox 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:12925591) |
Ensembl MGI |
PMID:12925591 |
GO_REF:0000107 |
NCBI chrNW_004936541:216,390...238,153
Ensembl chrNW_004936541:217,193...236,031
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Meox2 |
mesenchyme homeobox 2 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:12925591) |
Ensembl MGI |
PMID:12925591 |
GO_REF:0000107 |
NCBI chrNW_004936546:2,239,442...2,304,099
Ensembl chrNW_004936546:2,239,442...2,304,099
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Neurog1 |
neurogenin 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936597:2,708,001...2,709,702
Ensembl chrNW_004936597:2,708,691...2,709,425
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Tifab |
TIFA inhibitor |
involved_in |
ISO |
(PMID:23419067) |
CAFA |
PMID:23419067 |
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NCBI chrNW_004936597:2,620,661...2,621,302
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Wt1 |
WT1 transcription factor |
involved_in |
ISO |
(MGI:62488|PMID:8395349) |
UniProt |
PMID:8395349 |
MGI:62488 |
NCBI chrNW_004936533:5,411,949...5,459,693
Ensembl chrNW_004936533:5,411,848...5,459,693
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G |
Lama5 |
laminin subunit alpha 5 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:16316641) |
Ensembl MGI |
PMID:16316641 |
GO_REF:0000107 |
NCBI chrNW_004936514:9,928,234...9,973,425
Ensembl chrNW_004936514:9,928,316...9,973,349
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G |
Nrp2 |
neuropilin 2 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:16319111) |
Ensembl MGI |
PMID:16319111 |
GO_REF:0000107 |
NCBI chrNW_004936631:2,106,378...2,222,082
Ensembl chrNW_004936631:2,106,453...2,222,088
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G |
Sema3f |
semaphorin 3F |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:16319111) |
Ensembl MGI |
PMID:16319111 |
GO_REF:0000107 |
NCBI chrNW_004936529:1,704,523...1,733,465
Ensembl chrNW_004936529:1,704,476...1,733,941
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G |
Shh |
sonic hedgehog signaling molecule |
involved_in acts_upstream_of |
IEA ISO |
(PMID:15337776) |
Ensembl MGI |
PMID:15337776 |
GO_REF:0000107 |
NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
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G |
Nrp1 |
neuropilin 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936574:1,694,433...1,834,720
Ensembl chrNW_004936574:1,694,336...1,834,720
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G |
Nrp2 |
neuropilin 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936631:2,106,378...2,222,082
Ensembl chrNW_004936631:2,106,453...2,222,088
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G |
Sema3f |
semaphorin 3F |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936529:1,704,523...1,733,465
Ensembl chrNW_004936529:1,704,476...1,733,941
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G |
Nckap1 |
NCK associated protein 1 |
acts_upstream_of_or_within |
ISO |
(PMID:16831833) |
MGI |
PMID:16831833 |
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NCBI chrNW_004936509:11,525,764...11,624,833
Ensembl chrNW_004936509:11,524,556...11,624,621
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G |
Pcsk6 |
proprotein convertase subtilisin/kexin type 6 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(PMID:10809672) |
Ensembl MGI |
PMID:10809672 |
GO_REF:0000107 |
NCBI chrNW_004936483:2,374,357...2,561,322
Ensembl chrNW_004936483:2,374,357...2,561,384
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G |
Smad2 |
SMAD family member 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936497:14,723,199...14,812,160
Ensembl chrNW_004936497:14,723,199...14,801,697
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G |
Smad6 |
SMAD family member 6 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chrNW_004936471:26,781,420...26,856,556
Ensembl chrNW_004936471:26,781,549...26,856,571
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Term paths to the root
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