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ONTOLOGY REPORT - ANNOTATIONS

Term:embryonic pattern specification
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Accession:GO:0009880 term browser browse the term
Definition:The process that results in the patterns of cell differentiation that will arise in an embryo.
Synonyms:broad_synonym: embryonic pattern biosynthesis;   embryonic pattern formation
 related_synonym: ventral/lateral system


show annotations for term's descendants           Sort by:
embryonic pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10049573) Ensembl
MGI		 PMID:10049573 GO_REF:0000107 NCBI chr20:57,168,753...57,266,641
Ensembl chr20:57,168,753...57,266,641 		JBrowse link
G DISP1 dispatched RND transporter family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12372301) Ensembl
MGI		 PMID:12372301 GO_REF:0000107 NCBI chr 1:222,815,039...223,005,995
Ensembl chr 1:222,815,022...223,005,995 		JBrowse link
G DOP1B DOP1 leucine zipper like protein B involved_in IMP (PMID:10950924) UniProt PMID:10950924 NCBI chr21:36,156,824...36,294,274
Ensembl chr21:36,156,782...36,294,274 		JBrowse link
G EFNB1 ephrin B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15037550) Ensembl
MGI		 PMID:15037550 GO_REF:0000107 NCBI chr  X:68,829,021...68,842,160
Ensembl chr  X:68,829,021...68,842,160 		JBrowse link
G ERBB4 erb-b2 receptor tyrosine kinase 4 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:211,375,717...212,538,802
Ensembl chr 2:211,375,717...212,538,841 		JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16618415)
(PMID:17522155)		 Ensembl
MGI		 PMID:16618415 PMID:17522155 GO_REF:0000107 NCBI chr 5:44,300,247...44,389,420
Ensembl chr 5:44,300,247...44,389,706 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:16618415) UniProt
MGI		 PMID:16618415 GO_REF:0000024 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18582859) Ensembl
MGI		 PMID:18582859 GO_REF:0000107 NCBI chr 2:219,054,424...219,060,921
Ensembl chr 2:219,054,424...219,060,921 		JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:10529425) Ensembl
MGI
UniProt		 PMID:10529425 GO_REF:0000024 GO_REF:0000107 NCBI chr17:36,936,785...36,944,612
Ensembl chr17:36,936,785...36,944,612 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19653321) MGI PMID:19653321 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044 		JBrowse link
G MEIS1 Meis homeobox 1 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:66,435,125...66,573,869
Ensembl chr 2:66,433,452...66,573,869 		JBrowse link
G MEIS2 Meis homeobox 2 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr15:36,889,204...37,101,311
Ensembl chr15:36,889,204...37,101,299 		JBrowse link
G MEIS3 Meis homeobox 3 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr19:47,403,124...47,422,233
Ensembl chr19:47,403,124...47,419,527 		JBrowse link
G MEIS3P1 Meis homeobox 3 pseudogene 1 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr17:15,786,850...15,789,705
Ensembl chr17:15,786,618...15,787,575 		JBrowse link
G MEIS3P2 Meis homeobox 3 pseudogene 2 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr17:20,588,850...20,590,815
Ensembl chr17:20,589,293...20,590,367 		JBrowse link
G NANOG Nanog homeobox involved_in ISO (MGI:3042348|PMID:15108323) HGNC-UCL PMID:15108323 MGI:3042348 NCBI chr12:7,789,402...7,799,146
Ensembl chr12:7,787,794...7,799,146 		JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311163) Ensembl
MGI		 PMID:11311163 GO_REF:0000107 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951 		JBrowse link
G NOTO notochord homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15550757) Ensembl
MGI		 PMID:15550757 GO_REF:0000107 NCBI chr 2:73,202,574...73,212,513
Ensembl chr 2:73,202,574...73,212,513 		JBrowse link
G OOEP oocyte expressed protein involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:18191828) TreeGrafter
MGI
GO_Central		 PMID:18191828 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:73,368,555...73,369,897
NCBI chr 6:73,392,932...73,394,611
Ensembl chr 6:73,368,555...73,395,133 		JBrowse link
G PGAP1 post-GPI attachment to proteins inositol deacylase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10529425) Ensembl
MGI		 PMID:10529425 GO_REF:0000107 NCBI chr 2:196,833,004...196,926,707
Ensembl chr 2:196,833,004...196,927,796 		JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 involved_in ISS
IEA
IBA		 UniProt
TreeGrafter
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:106,900,063...106,903,341
Ensembl chr  X:106,900,063...106,903,341 		JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:83,853,229...83,857,515
Ensembl chr 6:83,853,360...83,857,515 		JBrowse link
G RIPPLY3 ripply transcriptional repressor 3 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr21:37,006,150...37,019,662
Ensembl chr21:37,006,150...37,019,662 		JBrowse link
G SATB2 SATB homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16751105) Ensembl
MGI		 PMID:16751105 GO_REF:0000107 NCBI chr 2:199,269,500...199,471,266
Ensembl chr 2:199,269,505...199,471,266 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in TAS (PMID:11001584) BHF-UCL PMID:11001584 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
G SIM2 SIM bHLH transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12024028) Ensembl
MGI		 PMID:12024028 GO_REF:0000107 NCBI chr21:36,699,115...36,749,917
Ensembl chr21:36,699,115...36,749,917 		JBrowse link
G SMAD1 SMAD family member 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 4:145,480,770...145,559,176
Ensembl chr 4:145,481,194...145,559,176 		JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15183723) Ensembl
MGI		 PMID:15183723 GO_REF:0000107 NCBI chr18:47,808,957...47,930,872
Ensembl chr18:47,808,957...47,931,146 		JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15183723) Ensembl
MGI		 PMID:15183723 GO_REF:0000107 NCBI chr15:67,065,602...67,195,169
Ensembl chr15:67,063,763...67,195,173 		JBrowse link
G SMAD5 SMAD family member 5 involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:136,132,845...136,182,733
Ensembl chr 5:136,132,845...136,188,747 		JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:17984226) MGI PMID:17984226 NCBI chr 6:10,396,677...10,419,659
Ensembl chr 6:10,393,186...10,419,659 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10835630) Ensembl
MGI		 PMID:10835630 GO_REF:0000107 NCBI chr11:114,059,711...114,256,770
Ensembl chr11:114,059,041...114,256,765 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:137,566,127...137,577,691
Ensembl chr  X:137,566,127...137,577,691 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRIPTO cripto, EGF-CFC family member involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:9790191) UniProt
MGI		 PMID:9790191 GO_REF:0000024 NCBI chr 3:46,574,535...46,582,457
Ensembl chr 3:46,574,534...46,582,457 		JBrowse link
G FRS2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15870281) Ensembl
MGI		 PMID:15870281 GO_REF:0000107 NCBI chr12:69,470,388...69,579,793
Ensembl chr12:69,470,349...69,579,793 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in IDA (PMID:9054360) BHF-UCL PMID:9054360 NCBI chr 2:207,762,598...207,769,906
Ensembl chr 2:207,762,598...207,769,906 		JBrowse link
G HOXD8 homeobox D8 involved_in NAS (PMID:2568311) UniProt PMID:2568311 NCBI chr 2:176,129,705...176,132,695
Ensembl chr 2:176,129,694...176,132,695 		JBrowse link
G TASOR transcription activation suppressor involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:56,620,132...56,683,265
Ensembl chr 3:56,620,132...56,683,265 		JBrowse link
G TBX3 T-box transcription factor 3 involved_in IMP (PMID:9207801) UniProt PMID:9207801 NCBI chr12:114,670,255...114,684,175
Ensembl chr12:114,670,255...114,684,175 		JBrowse link
G TBXT T-box transcription factor T involved_in TAS (PMID:8963900) PINC PMID:8963900 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700 		JBrowse link
G TCF7L1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (PMID:14668413) MGI PMID:14668413 NCBI chr 2:85,133,392...85,310,387
Ensembl chr 2:85,133,392...85,310,387 		JBrowse link
G WNT5A Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539 		JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (PMID:11118896) MGI PMID:11118896 NCBI chr 3:184,380,054...184,390,739
Ensembl chr 3:184,380,054...184,390,736 		JBrowse link
G CHRDL1 chordin like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:110,673,856...110,795,817
Ensembl chr  X:110,673,856...110,795,819 		JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:72,301,646...72,307,157
Ensembl chr  X:72,301,638...72,307,187 		JBrowse link
G COBL cordon-bleu WH2 repeat protein involved_in ISS
IEA		 BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:51,016,212...51,316,809
Ensembl chr 7:51,016,212...51,316,818 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9230313) Ensembl
MGI		 PMID:9230313 GO_REF:0000107 NCBI chr 3:41,199,505...41,240,443
Ensembl chr 3:41,194,741...41,260,096 		JBrowse link
G FRAT1 FRAT regulator of WNT signaling pathway 1 acts_upstream_of_or_within ISO (PMID:10534617) MGI PMID:10534617 NCBI chr10:97,319,271...97,321,915
Ensembl chr10:97,319,271...97,321,915 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in IDA (PMID:12121999) BHF-UCL PMID:12121999 NCBI chr 2:207,762,598...207,769,906
Ensembl chr 2:207,762,598...207,769,906 		JBrowse link
G STIL STIL centriolar assembly protein involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:10385121) BHF-UCL
MGI		 PMID:10385121 GO_REF:0000024 NCBI chr 1:47,250,139...47,314,896
Ensembl chr 1:47,250,139...47,314,892 		JBrowse link
G WNT1 Wnt family member 1 involved_in IEA
ISS		 Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:48,978,322...48,982,620
Ensembl chr12:48,978,322...48,982,620 		JBrowse link
G WNT7A Wnt family member 7A involved_in IMP (PMID:16826533) BHF-UCL PMID:16826533 NCBI chr 3:13,816,258...13,880,071
Ensembl chr 3:13,816,258...13,880,071 		JBrowse link
neural plate axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2CD3 C2 domain containing 3 centriole elongation regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19004860) Ensembl
MGI		 PMID:19004860 GO_REF:0000107 NCBI chr11:74,012,718...74,171,002
Ensembl chr11:74,012,718...74,171,210 		JBrowse link
G PTCH1 patched 1 involved_in IEA
ISS		 Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:95,442,980...95,516,971
Ensembl chr 9:95,442,980...95,517,057 		JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLD6 phospholipase D family member 6 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:17,200,995...17,206,333
Ensembl chr17:17,200,995...17,206,333 		JBrowse link
G TDRD1 tudor domain containing 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:114,174,874...114,232,666
Ensembl chr10:114,179,270...114,232,666 		JBrowse link
G TDRD5 tudor domain containing 5 involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:179,591,613...179,691,272
Ensembl chr 1:179,591,613...179,691,272 		JBrowse link
G TDRD6 tudor domain containing 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:46,680,268...46,704,319
Ensembl chr 6:46,687,875...46,704,319 		JBrowse link
G TDRD7 tudor domain containing 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:97,412,096...97,496,125
Ensembl chr 9:97,412,096...97,496,125 		JBrowse link
G TDRKH tudor and KH domain containing involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:151,766,486...151,790,534
Ensembl chr 1:151,770,107...151,791,416 		JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794329) Ensembl
MGI		 PMID:18794329 GO_REF:0000107 NCBI chr 2:120,013,077...120,179,119
Ensembl chr 2:120,013,077...120,179,119 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chr20:22,580,998...22,585,490
Ensembl chr20:22,580,998...22,585,455 		JBrowse link
G GDF3 growth differentiation factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16368929) Ensembl
MGI		 PMID:16368929 GO_REF:0000107 NCBI chr12:7,689,784...7,695,775
Ensembl chr12:7,689,784...7,695,775 		JBrowse link
G KDM6A lysine demethylase 6A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22949634) Ensembl
MGI		 PMID:22949634 GO_REF:0000107 NCBI chr  X:44,873,188...45,112,779
Ensembl chr  X:44,873,188...45,112,779 		JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11291865) Ensembl
MGI		 PMID:11291865 GO_REF:0000107 NCBI chr17:36,936,785...36,944,612
Ensembl chr17:36,936,785...36,944,612 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr15:89,732,446...89,751,249
Ensembl chr15:89,749,875...89,751,249 		JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:20346937) TreeGrafter
MGI
GO_Central		 PMID:20346937 GO_REF:0000033 GO_REF:0000118 NCBI chr15:89,776,332...89,778,754
Ensembl chr15:89,760,591...89,778,754 		JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21998026) Ensembl
MGI		 PMID:21998026 GO_REF:0000107 NCBI chr 9:137,299,631...137,302,271
Ensembl chr 9:137,299,631...137,302,271 		JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chr14:56,799,905...56,810,479
Ensembl chr14:56,799,905...56,816,693 		JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:20346937) UniProt
MGI		 PMID:20346937 GO_REF:0000024 NCBI chr  X:106,900,063...106,903,341
Ensembl chr  X:106,900,063...106,903,341 		JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:20346937) Ensembl
MGI
UniProt		 PMID:20346937 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:83,853,229...83,857,515
Ensembl chr 6:83,853,360...83,857,515 		JBrowse link
G SMAD4 SMAD family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9420335) Ensembl
MGI		 PMID:9420335 GO_REF:0000107 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,528...51,085,045 		JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20346937) Ensembl
MGI		 PMID:20346937 GO_REF:0000107 NCBI chr16:30,085,793...30,091,924
Ensembl chr16:30,085,793...30,091,924 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20178780) Ensembl
MGI		 PMID:20178780 GO_REF:0000107 NCBI chr12:123,584,552...123,598,582
Ensembl chr12:123,584,533...123,598,582 		JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COBL cordon-bleu WH2 repeat protein involved_in ISS
IEA		 BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:51,016,212...51,316,809
Ensembl chr 7:51,016,212...51,316,818 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14960495) Ensembl
MGI		 PMID:14960495 GO_REF:0000107 NCBI chr 6:170,282,206...170,291,078
Ensembl chr 6:170,282,206...170,306,565 		JBrowse link
G MEOX1 mesenchyme homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12925591) Ensembl
MGI		 PMID:12925591 GO_REF:0000107 NCBI chr17:43,640,389...43,661,922
Ensembl chr17:43,640,389...43,661,922 		JBrowse link
G MEOX2 mesenchyme homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12925591) Ensembl
MGI		 PMID:12925591 GO_REF:0000107 NCBI chr 7:15,611,212...15,686,683
Ensembl chr 7:15,611,212...15,686,683 		JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr  X:106,900,063...106,903,341
Ensembl chr  X:106,900,063...106,903,341 		JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BASP1 brain abundant membrane attached signal protein 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:17,216,823...17,276,834
Ensembl chr 5:17,065,598...17,276,843 		JBrowse link
G DCANP1 dendritic cell associated nuclear protein 1 involved_in IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,444,214...135,447,348
Ensembl chr 5:135,444,214...135,447,348 		JBrowse link
G NEUROG1 neurogenin 1 involved_in IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,534,282...135,535,964
Ensembl chr 5:135,534,282...135,535,964 		JBrowse link
G TIFAB TIFA inhibitor involved_in IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,444,226...135,452,351
Ensembl chr 5:135,444,226...135,452,351 		JBrowse link
G WT1 WT1 transcription factor involved_in ISS UniProt GO_REF:0000024 NCBI chr11:32,387,775...32,435,539
Ensembl chr11:32,387,775...32,435,564 		JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMA5 laminin subunit alpha 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16316641) Ensembl
MGI		 PMID:16316641 GO_REF:0000107 NCBI chr20:62,309,065...62,367,312
Ensembl chr20:62,307,955...62,367,312 		JBrowse link
G NRP2 neuropilin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16319111) Ensembl
MGI		 PMID:16319111 GO_REF:0000107 NCBI chr 2:205,682,501...205,798,131
Ensembl chr 2:205,681,990...205,798,133 		JBrowse link
G SEMA3F semaphorin 3F involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16319111) Ensembl
MGI		 PMID:16319111 GO_REF:0000107 NCBI chr 3:50,155,058...50,189,075
Ensembl chr 3:50,155,045...50,189,075 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15337776) Ensembl
MGI		 PMID:15337776 GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRP1 neuropilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:33,177,493...33,334,667
Ensembl chr10:33,177,492...33,336,262 		JBrowse link
G NRP2 neuropilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:205,682,501...205,798,131
Ensembl chr 2:205,681,990...205,798,133 		JBrowse link
G SEMA3A semaphorin 3A involved_in ISO (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 7:83,955,777...84,492,725
Ensembl chr 7:83,955,777...84,492,724 		JBrowse link
G SEMA3F semaphorin 3F involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:50,155,058...50,189,075
Ensembl chr 3:50,155,045...50,189,075 		JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chr 2:182,909,115...183,038,457
Ensembl chr 2:182,909,115...183,038,858 		JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10809672) Ensembl
MGI		 PMID:10809672 GO_REF:0000107 NCBI chr15:101,303,933...101,489,707
Ensembl chr15:101,289,784...101,525,202 		JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CXXC4 CXXC finger protein 4 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 4:104,468,308...104,494,894
Ensembl chr 4:104,468,308...104,494,901 		JBrowse link
G SMAD2 SMAD family member 2 involved_in IMP (PMID:9436979) BHF-UCL PMID:9436979 NCBI chr18:47,808,957...47,930,872
Ensembl chr18:47,808,957...47,931,146 		JBrowse link
G SMAD6 SMAD family member 6 involved_in IMP (PMID:9436979) BHF-UCL PMID:9436979 NCBI chr15:66,702,236...66,782,849
Ensembl chr15:66,702,236...66,782,849 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19770
    multicellular organismal process 8501
      pattern specification process 534
        embryonic pattern specification 87
          blastoderm segmentation + 28
          embryonic axis specification + 50
          negative regulation of embryonic pattern specification 0
          positive regulation of embryonic pattern specification 0
          regulation of embryonic pattern specification + 0
          somite specification 5
          terminal region determination 0
Path 2
Term Annotations click to browse term
  biological_process 19770
    developmental process 7667
      anatomical structure development 7073
        multicellular organism development 5676
          pattern specification process 534
            embryonic pattern specification 87
              blastoderm segmentation + 28
              embryonic axis specification + 50
              negative regulation of embryonic pattern specification 0
              positive regulation of embryonic pattern specification 0
              regulation of embryonic pattern specification + 0
              somite specification 5
              terminal region determination 0
paths to the root