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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic pattern specification
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Accession:GO:0009880 term browser browse the term
Definition:The process that results in the patterns of cell differentiation that will arise in an embryo.
Synonyms:broad_synonym: embryonic pattern biosynthesis;   embryonic pattern formation
 related_synonym: ventral/lateral system



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embryonic pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (MGI:1332362|PMID:10049573) RGD PMID:10049573 MGI:1332362 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO MGI:2672101 (MGI:2388245|PMID:12372301) RGD PMID:12372301 MGI:2388245 NCBI chr13:94,720,928...94,866,702
Ensembl chr13:94,720,928...94,866,702
JBrowse link
G Dop1b DOP1 leucine zipper like protein B involved_in ISO (PMID:10950924) RGD PMID:10950924 NCBI chr11:33,024,376...33,125,931
Ensembl chr11:33,024,411...33,125,931
JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3039289 (MGI:3037600|PMID:15037550)
Ensembl
RGD
PMID:15037550 GO_REF:0000107 MGI:3037600 NCBI chr  X:64,257,351...64,270,158
Ensembl chr  X:64,257,351...64,270,157
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:1352955|PMID:10655590)
UniProt
RGD
PMID:10655590 GO_REF:0000024 MGI:1352955 NCBI chr 9:69,523,733...70,596,743
Ensembl chr 9:69,531,481...70,596,595
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1927833|MGI:3629660 (MGI:3714586|PMID:17522155), (MGI:3722952|PMID:16618415) RGD PMID:16618415 PMID:17522155 MGI:3714586 MGI:3722952 NCBI chr 2:50,801,897...50,875,428
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (MGI:3722952|PMID:16618415) RGD PMID:16618415 MGI:3722952 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:3807419 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2443342 (MGI:1346311|PMID:10529425)
UniProt
RGD
PMID:10529425 GO_REF:0000024 MGI:1346311 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:4415718 (MGI:4413396|PMID:19653321) RGD PMID:19653321 MGI:4413396 NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Meis2 Meis homeobox 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:102,742,905...102,944,833
Ensembl chr 3:102,742,900...102,949,696
JBrowse link
G Meis3 Meis homeobox 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:76,861,267...76,872,691
Ensembl chr 1:76,861,924...76,872,691
JBrowse link
G Nanog Nanog homeobox acts_upstream_of_or_within ISO (PMID:15108323) RGD PMID:15108323 NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO MGI:1857063 (MGI:3587655|PMID:15550757) RGD PMID:15550757 MGI:3587655 NCBI chr 4:117,961,163...117,965,402
Ensembl chr 4:117,961,163...117,965,402
JBrowse link
G Ooep oocyte expressed protein acts_upstream_of_or_within ISO (MGI:3775875|PMID:18191828) RGD PMID:18191828 MGI:3775875 NCBI chr 8:79,223,388...79,224,554
Ensembl chr 8:79,223,375...79,224,541
JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO MGI:1856621|MGI:99783 (MGI:1346311|PMID:10529425) RGD PMID:10529425 MGI:1346311 NCBI chr 9:55,975,574...56,044,325
Ensembl chr 9:55,975,667...56,044,464
JBrowse link
G Ripply1 ripply transcriptional repressor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349
JBrowse link
G Ripply2 ripply transcriptional repressor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:87,974,444...87,978,996
Ensembl chr 8:87,974,776...87,978,969
JBrowse link
G Ripply3 ripply transcriptional repressor 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:33,648,471...33,656,587
Ensembl chr11:33,648,486...33,656,584
JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO MGI:3692768 (MGI:3692344|PMID:16751105) RGD PMID:16751105 MGI:3692344 NCBI chr 9:58,348,027...58,534,256
Ensembl chr 9:58,350,246...58,530,707
JBrowse link
G Sim2 SIM bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:2180881 (MGI:2180275|PMID:12024028) RGD PMID:12024028 MGI:2180275 NCBI chr11:33,414,218...33,453,663
Ensembl chr11:33,414,218...33,453,663
JBrowse link
G Smad1 SMAD family member 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO MGI:1201674 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Smad5 SMAD family member 5 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:3769332 (MGI:3768270|PMID:17984226) RGD PMID:17984226 MGI:3768270 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO MGI:2182708 (MGI:1859075|PMID:10835630) RGD PMID:10835630 MGI:1859075 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011
JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:2180720 (MGI:3617674|PMID:16397896) RGD PMID:16397896 MGI:3617674 NCBI chr  X:136,123,662...136,134,295
Ensembl chr  X:136,124,026...136,134,746
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3580390 (MGI:3580203|PMID:15870281) RGD PMID:15870281 MGI:3580203 NCBI chr 7:52,711,255...52,792,758
Ensembl chr 7:52,711,257...52,792,743
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO
IEA
(PMID:9054360)
GO_REF:0000107
RGD
Ensembl
PMID:9054360 GO_REF:0000107 NCBI chr 9:66,117,370...66,119,127
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Tasor transcription activation suppressor involved_in ISO (MGI:6109647|PMID:28839193) RGD PMID:28839193 MGI:6109647 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:9207801)
UniProt
RGD
PMID:9207801 GO_REF:0000024 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708
JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (MGI:3043490|PMID:14668413) RGD PMID:14668413 MGI:3043490 NCBI chr 4:104,680,734...104,846,086
Ensembl chr 4:104,680,739...104,845,287
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO MGI:1934206 (MGI:1303194|PMID:9790191) RGD PMID:9790191 MGI:1303194 NCBI chr 8:110,924,774...110,938,545
Ensembl chr 8:110,925,024...110,930,308
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (MGI:4835157|PMID:9054360) RGD PMID:9054360 MGI:4835157 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (MGI:1928546|PMID:11118896) RGD PMID:11118896 MGI:1928546 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673
JBrowse link
G Chrdl1 chordin-like 1 involved_in ISO
IEA
(MGI:1928546|PMID:11118896), (MGI:1934402|PMID:11401399)
GO_REF:0000107
RGD
Ensembl
PMID:11118896 PMID:11401399 GO_REF:0000107 MGI:1928546 MGI:1934402 NCBI chr  X:106,889,125...106,992,937
Ensembl chr  X:106,889,125...106,992,921
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in IDA PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:67,350,376...67,355,072
Ensembl chr  X:67,350,373...67,355,162
JBrowse link
G Cobl cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (PMID:7586755) RGD PMID:7586755 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:894149|PMID:9230313) RGD PMID:9230313 MGI:894149 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Frat1 FRAT regulator of WNT signaling pathway 1 acts_upstream_of_or_within ISO (MGI:1349209|PMID:10534617) RGD PMID:10534617 MGI:1349209 NCBI chr 1:240,638,288...240,640,857
Ensembl chr 1:240,638,296...240,640,945
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:12121999) RGD PMID:12121999 NCBI chr 9:66,117,370...66,119,127
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Peg12 paternally expressed 12 acts_upstream_of_or_within ISO (MGI:1349209|PMID:10534617) RGD PMID:10534617 MGI:1349209 NCBI chr 1:115,962,511...115,965,114
Ensembl chr 1:115,962,511...115,965,114
JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:128,520,837...128,573,732
Ensembl chr 5:128,520,953...128,573,730
JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO (MGI:4822553|PMID:2534596) RGD PMID:2534596 MGI:4822553 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) RGD PMID:16826533 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981
JBrowse link
neural plate axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (MGI:3821640|PMID:19004860) RGD PMID:19004860 MGI:3821640 NCBI chr 1:154,715,151...154,812,955
Ensembl chr 1:154,715,310...154,812,520
JBrowse link
G Ptch1 patched 1 involved_in ISO (MGI:5142377|PMID:11517919) RGD PMID:11517919 MGI:5142377 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in ISO (MGI:4943609|PMID:21397848) RGD PMID:21397848 MGI:4943609 NCBI chr10:44,577,740...44,581,686
Ensembl chr10:44,577,675...44,581,077
JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871
JBrowse link
G Tdrd15 tudor domain containing 15 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:30,741,956...30,818,500
Ensembl chr 6:30,741,086...30,767,049
JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(MGI:4946318|PMID:21383078)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21383078 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:4946318, RGD:13792537 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319
JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344
JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544
JBrowse link
G Tdrkh tudor and KH domain containing involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:182,049,175...182,071,516
Ensembl chr 2:182,049,215...182,070,755
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:30,673,052...30,770,213
Ensembl chr13:30,669,764...30,768,360
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1857725 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO MGI:3612535 (MGI:3611720|PMID:16368929) RGD PMID:16368929 MGI:3611720 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO MGI:5448825 (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO MGI:1857502|MGI:1857848 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3580268 (MGI:4459001|PMID:20346937)
RGD PMID:20346937 PMID:21873635 MGI:4459001, RGD:13792537 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO MGI:5438570 (MGI:5438472|PMID:21998026) RGD PMID:21998026 MGI:5438472 NCBI chr 3:7,992,582...7,995,136
Ensembl chr 3:7,992,552...7,995,133
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:1857502 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968 (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349
JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in
ISO MGI:3614797 (MGI:4459001|PMID:20346937)
(MGI:3613215|PMID:16326386)
RGD PMID:16326386 PMID:20346937 MGI:3613215 MGI:4459001 NCBI chr 8:87,974,444...87,978,996
Ensembl chr 8:87,974,776...87,978,969
JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1858049 (MGI:1195384|PMID:9420335)
Ensembl
RGD
PMID:9420335 GO_REF:0000107 MGI:1195384 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438
JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr 1:181,387,851...181,392,762
Ensembl chr 1:181,388,684...181,392,593
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO MGI:4456438 (MGI:4453264|PMID:20178780) RGD PMID:20178780 MGI:4453264 NCBI chr12:32,052,542...32,061,596
Ensembl chr12:32,052,543...32,071,903
JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (PMID:7586755) RGD PMID:7586755 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3038950 (MGI:3034157|PMID:14960495)
Ensembl
RGD
PMID:14960495 GO_REF:0000107 MGI:3034157 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO MGI:103219 (MGI:2669571|PMID:12925591) RGD PMID:12925591 MGI:2669571 NCBI chr10:86,818,450...86,837,563
Ensembl chr10:86,818,478...86,837,660
JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:103220 (MGI:2669571|PMID:12925591)
GO_REF:0000107
RGD
Ensembl
PMID:12925591 GO_REF:0000107 MGI:2669571 NCBI chr 6:53,856,760...53,917,467
Ensembl chr 6:53,856,758...53,917,467
JBrowse link
specification of segmental identity, mandibular segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO (MGI:2156257|PMID:11784076) RGD PMID:11784076 MGI:2156257 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Chrd chordin involved_in ISO MGI:104327 (MGI:2156257|PMID:11784076) RGD PMID:11784076 MGI:2156257 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673
JBrowse link
G Ednra endothelin receptor type A involved_in ISO MGI:3773699 (MGI:5688194|PMID:19017795) RGD PMID:19017795 MGI:5688194 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
JBrowse link
G Nog noggin involved_in ISO MGI:1313268 (MGI:2156257|PMID:11784076) RGD PMID:11784076 MGI:2156257 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
JBrowse link
specification of segmental identity, maxillary segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednra endothelin receptor type A involved_in ISO MGI:3773699 (MGI:5688194|PMID:19017795) RGD PMID:19017795 MGI:5688194 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
JBrowse link
G Six1 SIX homeobox 1 involved_in ISO MGI:3612276 (MGI:5903136|PMID:28455376) RGD PMID:28455376 MGI:5903136 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592
JBrowse link
G Wt1 WT1 transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:62488|PMID:8395349)
UniProt
RGD
PMID:8395349 GO_REF:0000024 MGI:62488 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643
JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1934917 (MGI:3611396|PMID:16316641)
GO_REF:0000107
RGD
Ensembl
PMID:16316641 GO_REF:0000107 MGI:3611396 NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451
JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within ISO MGI:2137037 (MGI:3613099|PMID:16319111) RGD PMID:16319111 MGI:3613099 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958
JBrowse link
G Sema3f semaphorin 3F acts_upstream_of_or_within ISO MGI:2670663 (MGI:3613099|PMID:16319111) RGD PMID:16319111 MGI:3613099 NCBI chr 8:108,357,629...108,387,083
Ensembl chr 8:108,357,629...108,387,083
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of
involved_in
ISO
IEA
(MGI:3053236|PMID:15337776)
GO_REF:0000107
RGD
Ensembl
PMID:15337776 GO_REF:0000107 MGI:3053236 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432
JBrowse link
G Sema3f semaphorin 3F involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 8:108,357,629...108,387,083
Ensembl chr 8:108,357,629...108,387,083
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO MGI:2181754|MGI:97359 (MGI:1858546|PMID:10809672) RGD PMID:10809672 MGI:1858546 NCBI chr 1:119,428,978...119,627,626
Ensembl chr 1:119,429,265...119,627,596
JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 involved_in ISO (PMID:9436979) RGD PMID:9436979 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323
JBrowse link
G Smad6 SMAD family member 6 involved_in ISO (PMID:9436979) RGD PMID:9436979 NCBI chr 8:64,450,114...64,519,673
Ensembl chr 8:64,450,114...64,519,763
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18737
    multicellular organismal process 8861
      pattern specification process 501
        embryonic pattern specification 85
          blastoderm segmentation + 30
          embryonic axis specification + 47
          negative regulation of embryonic pattern specification 0
          positive regulation of embryonic pattern specification 0
          regulation of embryonic pattern specification + 0
          somite specification 4
          terminal region determination 0
Path 2
Term Annotations click to browse term
  biological_process 18737
    developmental process 6895
      anatomical structure development 6371
        multicellular organism development 5436
          pattern specification process 501
            embryonic pattern specification 85
              blastoderm segmentation + 30
              embryonic axis specification + 47
              negative regulation of embryonic pattern specification 0
              positive regulation of embryonic pattern specification 0
              regulation of embryonic pattern specification + 0
              somite specification 4
              terminal region determination 0
paths to the root