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ONTOLOGY REPORT - ANNOTATIONS


Term:axis specification
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Accession:GO:0009798 term browser browse the term
Definition:The establishment, maintenance and elaboration of a pattern along a line or around a point.
Synonyms:related_synonym: axis determination



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axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:2449944 (MGI:2449253|PMID:12645927) RGD PMID:12645927 MGI:2449253 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:3513254 (MGI:3715395|PMID:17531978) RGD PMID:17531978 MGI:3715395 NCBI chr 8:87,974,444...87,978,996
Ensembl chr 8:87,974,776...87,978,969
JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within ISO (MGI:2178881|PMID:11948913) RGD PMID:11948913 MGI:2178881 NCBI chr 9:76,329,882...76,343,523
Ensembl chr 9:76,329,882...76,343,523
JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aurka aurora kinase A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3836420 (MGI:5449118|PMID:22939930)
Ensembl
RGD
PMID:22939930 GO_REF:0000107 MGI:5449118 NCBI chr 3:161,128,309...161,144,524
Ensembl chr 3:161,128,313...161,144,390
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:104903 (MGI:1889107|PMID:10964473)
Ensembl
RGD
PMID:10964473 GO_REF:0000107 MGI:1889107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Cdx1 caudal type homeo box 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:54,472,448...54,499,799
Ensembl chr18:54,473,444...54,490,814
JBrowse link
G Cdx2 caudal type homeo box 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142
JBrowse link
G Cdx4 caudal type homeo box 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:68,326,874...68,335,461
Ensembl chr  X:68,326,874...68,335,461
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO MGI:107405|MGI:98658 (MGI:3042338|PMID:15004567), (MGI:3776330|PMID:18241853) RGD PMID:15004567 PMID:18241853 MGI:3042338 MGI:3776330 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2148590 (MGI:1353237|PMID:10662781)
Ensembl
RGD
PMID:10662781 GO_REF:0000107 MGI:1353237 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 involved_in IEA
ISO
GO_REF:0000107
(MGI:4821075|PMID:16434966)
Ensembl
RGD
PMID:16434966 GO_REF:0000107 MGI:4821075 NCBI chr 7:63,115,645...63,121,203
Ensembl chr 7:63,116,380...63,121,201
JBrowse link
G Gpc3 glypican 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:88180 (MGI:1889107|PMID:10964473)
Ensembl
RGD
PMID:10964473 GO_REF:0000107 MGI:1889107 NCBI chr  X:131,868,983...132,236,837
Ensembl chr  X:131,868,990...132,236,798
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO MGI:1341884 (MGI:3530185|PMID:15680351) RGD PMID:15680351 MGI:3530185 NCBI chr 2:93,096,706...93,100,316
Ensembl chr 2:93,095,498...93,100,312
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO MGI:1341800 (MGI:3530185|PMID:15680351) RGD PMID:15680351 MGI:3530185 NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218
JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO MGI:2449177 (MGI:2448170|PMID:12490556) RGD PMID:12490556 MGI:2448170 NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013
JBrowse link
G Lefty1 left right determination factor 1 acts_upstream_of_or_within ISO MGI:1201414 (MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:3042338 NCBI chr13:92,649,226...92,659,722
Ensembl chr13:92,656,323...92,659,720
JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2443342 (MGI:1346311|PMID:10529425)
UniProt
RGD
PMID:10529425 GO_REF:0000024 MGI:1346311 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO MGI:1856621|MGI:99783 (MGI:1346311|PMID:10529425) RGD PMID:10529425 MGI:1346311 NCBI chr 9:55,975,574...56,044,325
Ensembl chr 9:55,975,667...56,044,464
JBrowse link
G Rnf2 ring finger protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2447529 (MGI:2389282|PMID:12183370)
Ensembl
RGD
PMID:12183370 GO_REF:0000107 MGI:2389282 NCBI chr13:63,553,964...63,584,047
Ensembl chr13:63,554,862...63,583,099
JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (MGI:3794506|PMID:18321982) RGD PMID:18321982 MGI:3794506 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193
JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (MGI:2176418|PMID:11731796) RGD PMID:11731796 MGI:2176418 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3044914 (MGI:3044041|PMID:15155583) RGD PMID:15155583 MGI:3044041 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO MGI:1201414 (MGI:3776330|PMID:18241853) RGD PMID:18241853 MGI:3776330 NCBI chr 8:110,924,774...110,938,545
Ensembl chr 8:110,925,024...110,930,308
JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISS
ISO
GO_REF:0000024
(MGI:4397730|PMID:19841259)
UniProt
RGD
PMID:19841259 GO_REF:0000024 MGI:4397730 NCBI chr 2:248,931,885...249,047,248
Ensembl chr 2:248,931,903...249,048,298
JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902 (MGI:3771246|PMID:18028899) RGD PMID:18028899 MGI:3771246 NCBI chr10:88,680,248...88,724,170
Ensembl chr10:88,680,248...88,724,099
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3580390 (MGI:3580203|PMID:15870281) RGD PMID:15870281 MGI:3580203 NCBI chr 7:52,711,255...52,792,758
Ensembl chr 7:52,711,257...52,792,743
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO
IEA
(PMID:9054360)
GO_REF:0000107
RGD
Ensembl
PMID:9054360 GO_REF:0000107 NCBI chr 9:66,117,370...66,119,127
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Tasor transcription activation suppressor involved_in ISO (MGI:6109647|PMID:28839193) RGD PMID:28839193 MGI:6109647 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:9207801)
UniProt
RGD
PMID:9207801 GO_REF:0000024 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708
JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (MGI:3043490|PMID:14668413) RGD PMID:14668413 MGI:3043490 NCBI chr 4:104,680,734...104,846,086
Ensembl chr 4:104,680,739...104,845,287
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO MGI:1934206 (MGI:1303194|PMID:9790191) RGD PMID:9790191 MGI:1303194 NCBI chr 8:110,924,774...110,938,545
Ensembl chr 8:110,925,024...110,930,308
JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO
GO_REF:0000107
(MGI:4835157|PMID:9054360)
Ensembl
RGD
PMID:9054360 GO_REF:0000107 MGI:4835157 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO (MGI:1337175|PMID:10330403) RGD PMID:10330403 MGI:1337175 NCBI chr10:15,163,684...15,215,615
Ensembl chr10:15,163,684...15,215,615
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2181295 (MGI:2670493|PMID:12923052) RGD PMID:12923052 MGI:2670493 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2148594|MGI:2158470 (MGI:2670493|PMID:12923052)
Ensembl
RGD
PMID:12923052 GO_REF:0000107 MGI:2670493 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (MGI:3823171|PMID:18985738) RGD PMID:18985738 MGI:3823171 NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Mdfi MyoD family inhibitor involved_in ISO (MGI:4441142|PMID:11238923) RGD PMID:11238923 MGI:4441142 NCBI chr 9:13,156,806...13,175,218
Ensembl chr 9:13,156,866...13,175,217
JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856155|MGI:1934347 (MGI:1350715|PMID:10588713)
Ensembl
RGD
PMID:10588713 GO_REF:0000107 MGI:1350715 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Senp2 SUMO specific peptidase 2 IDA RGD PMID:10944533 RGD:1299408 NCBI chr11:78,981,429...79,018,274
Ensembl chr11:78,981,432...79,018,238
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:9192640)
Ensembl
RGD
PMID:9192640 GO_REF:0000107 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286
JBrowse link
G Vax2 ventral anterior homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2159246|MGI:2388160 (MGI:2157789|PMID:11830578), (MGI:2157790|PMID:11830579)
Ensembl
RGD
PMID:11830578 PMID:11830579 GO_REF:0000107 MGI:2157789 MGI:2157790 NCBI chr 4:116,195,576...116,219,597
Ensembl chr 4:116,195,528...116,219,594
JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902|MGI:2450903 (MGI:2450015|PMID:12569130) RGD PMID:12569130 MGI:2450015 NCBI chr10:88,680,248...88,724,170
Ensembl chr10:88,680,248...88,724,099
JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (MGI:1928546|PMID:11118896) RGD PMID:11118896 MGI:1928546 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673
JBrowse link
G Chrdl1 chordin-like 1 involved_in ISO (MGI:1928546|PMID:11118896), (MGI:1934402|PMID:11401399) RGD PMID:11118896 PMID:11401399 MGI:1928546 MGI:1934402 NCBI chr  X:106,889,125...106,992,937
Ensembl chr  X:106,889,125...106,992,921
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in IDA PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:67,350,376...67,355,072
Ensembl chr  X:67,350,373...67,355,162
JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:7586755)
Ensembl
RGD
PMID:7586755 GO_REF:0000107 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:894149|PMID:9230313)
Ensembl
RGD
PMID:9230313 GO_REF:0000107 MGI:894149 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Frat1 FRAT regulator of WNT signaling pathway 1 acts_upstream_of_or_within ISO (MGI:1349209|PMID:10534617) RGD PMID:10534617 MGI:1349209 NCBI chr 1:240,638,288...240,640,857 JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:12121999) RGD PMID:12121999 NCBI chr 9:66,117,370...66,119,127
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Peg12 paternally expressed 12 acts_upstream_of_or_within ISO (MGI:1349209|PMID:10534617) RGD PMID:10534617 MGI:1349209 NCBI chr 1:115,962,511...115,965,114
Ensembl chr 1:115,962,511...115,965,114
JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:128,520,837...128,573,732
Ensembl chr 5:128,520,953...128,573,730
JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO (MGI:4822553|PMID:2534596) RGD PMID:2534596 MGI:4822553 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) RGD PMID:16826533 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981
JBrowse link
epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:2677178 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
establishment of anatomical structure orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ttc8 tetratricopeptide repeat domain 8 involved_in ISO (PMID:14520415) RGD PMID:14520415 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418
JBrowse link
establishment of animal organ orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx4 iroquois homeobox 4 IEP RGD PMID:10882515 RGD:1582291 NCBI chr 1:30,030,561...30,039,549
Ensembl chr 1:30,030,561...30,039,549
JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO (MGI:3609071|PMID:16256739) RGD PMID:16256739 MGI:3609071 NCBI chr18:26,137,690...26,143,283
Ensembl chr18:26,137,690...26,143,283
JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 involved_in ISO (PMID:16377640) RGD PMID:16377640 NCBI chr15:44,299,591...44,311,695
Ensembl chr15:44,299,621...44,310,264
JBrowse link
left/right axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:15,768,047...15,886,744
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B acts_upstream_of_or_within ISO MGI:3578151 (MGI:5430243|PMID:22554696) RGD PMID:22554696 MGI:5430243 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:3054669 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:2661305|PMID:12730124)
Ensembl
RGD
PMID:12730124 GO_REF:0000107 MGI:2661305 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3578147 (MGI:4838374|PMID:20678497) RGD PMID:20678497 MGI:4838374 NCBI chr13:30,673,052...30,770,213
Ensembl chr13:30,669,764...30,768,360
JBrowse link
G Hspb11 heat shock protein family B (small), member 11 acts_upstream_of_or_within ISO MGI:4432759|MGI:5426875 (MGI:5426280|PMID:22595669) RGD PMID:22595669 MGI:5426280 NCBI chr 5:122,035,588...122,062,421
Ensembl chr 5:122,035,581...122,062,421
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO MGI:2682066|MGI:3829198 (MGI:3828200|PMID:18930042), (MGI:5430243|PMID:22554696) RGD PMID:18930042 PMID:22554696 MGI:3828200 MGI:5430243 NCBI chr 6:25,081,933...25,121,271 JBrowse link
G Mns1 meiosis-specific nuclear structural 1 acts_upstream_of_or_within ISO MGI:5425368 (MGI:5318625|PMID:22396656) RGD PMID:22396656 MGI:5318625 NCBI chr 8:73,148,877...73,169,570
Ensembl chr 8:73,148,877...73,176,925
JBrowse link
G Notch1 notch receptor 1 involved_in ISO UniProtKB:O35516 (MGI:2661305|PMID:12730124) RGD PMID:12730124 MGI:2661305 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
G Notch2 notch receptor 2 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q01705 (MGI:2661305|PMID:12730124)
Ensembl
RGD
PMID:12730124 GO_REF:0000107 MGI:2661305 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:3054669 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (MGI:4946570|PMID:21307093) RGD PMID:21307093 MGI:4946570 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2137553 (MGI:1267118|PMID:9636176)
Ensembl
RGD
PMID:9636176 GO_REF:0000107 MGI:1267118 NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
lung proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (MGI:3577664|PMID:15531758) RGD PMID:15531758 MGI:3577664 NCBI chr 2:50,801,897...50,875,428
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 IDA RGD PMID:9566905 RGD:68736 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:9192640)
Ensembl
RGD
PMID:9192640 GO_REF:0000107 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286
JBrowse link
neural plate axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (MGI:3821640|PMID:19004860) RGD PMID:19004860 MGI:3821640 NCBI chr 1:154,715,151...154,812,955
Ensembl chr 1:154,715,310...154,812,520
JBrowse link
G Ptch1 patched 1 involved_in ISO (MGI:5142377|PMID:11517919) RGD PMID:11517919 MGI:5142377 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in ISO (MGI:4943609|PMID:21397848) RGD PMID:21397848 MGI:4943609 NCBI chr10:44,577,740...44,581,686
Ensembl chr10:44,577,675...44,581,077
JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871
JBrowse link
G Tdrd15 tudor domain containing 15 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:30,741,956...30,818,500
Ensembl chr 6:30,741,086...30,767,049
JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(MGI:4946318|PMID:21383078)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21383078 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:4946318, RGD:13792537 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319
JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344
JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544
JBrowse link
G Tdrkh tudor and KH domain containing involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:182,049,175...182,071,516
Ensembl chr 2:182,049,215...182,070,755
JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5559673|PMID:11044396)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:11044396 GO_REF:0000024 GO_REF:0000107 MGI:5559673 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO (MGI:3609071|PMID:16256739) RGD PMID:16256739 MGI:3609071 NCBI chr18:26,137,690...26,143,283
Ensembl chr18:26,137,690...26,143,283
JBrowse link
polarity specification of proximal/distal axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:2677178 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO (MGI:3609071|PMID:16256739) RGD PMID:16256739 MGI:3609071 NCBI chr18:26,137,690...26,143,283
Ensembl chr18:26,137,690...26,143,283
JBrowse link
pole plasm assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr77 WD repeat domain 77 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:193,435,465...193,445,534
Ensembl chr 2:193,435,468...193,445,520
JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO MGI:1891557 (MGI:5546318|PMID:23552073) RGD PMID:23552073 MGI:5546318 NCBI chr11:35,021,536...35,038,322
Ensembl chr11:35,021,596...35,038,319
JBrowse link
G Foxa2 forkhead box A2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857725 (MGI:2157654|PMID:11291865)
UniProt
RGD
PMID:11291865 GO_REF:0000024 MGI:2157654 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO MGI:3612535 (MGI:3611720|PMID:16368929) RGD PMID:16368929 MGI:3611720 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:4999724|MGI:97359 (MGI:4950786|PMID:21445260) RGD PMID:21445260 MGI:4950786 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857502|MGI:1857848 (MGI:2157654|PMID:11291865)
UniProt
RGD
PMID:11291865 GO_REF:0000024 MGI:2157654 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:98958 (MGI:4413372|PMID:19795512)
RGD PMID:19795512 PMID:21873635 MGI:4413372, RGD:13792537 NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:96086 (MGI:4950786|PMID:21445260) RGD PMID:21445260 MGI:4950786 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:1857502 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2158696 (MGI:1312998|PMID:9799237) RGD PMID:9799237 MGI:1312998 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1298218 (MGI:4413372|PMID:19795512)
Ensembl
RGD
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
JBrowse link
proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (MGI:5582181|PMID:12163408) RGD PMID:12163408 MGI:5582181 NCBI chr 6:9,040,123...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:30,673,052...30,770,213
Ensembl chr13:30,669,764...30,768,360
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1857725 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO MGI:3612535 (MGI:3611720|PMID:16368929) RGD PMID:16368929 MGI:3611720 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO MGI:5448825 (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO MGI:1857502|MGI:1857848 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3580268 (MGI:4459001|PMID:20346937)
RGD PMID:20346937 PMID:21873635 MGI:4459001, RGD:13792537 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO MGI:5438570 (MGI:5438472|PMID:21998026) RGD PMID:21998026 MGI:5438472 NCBI chr 3:7,992,582...7,995,136
Ensembl chr 3:7,992,552...7,995,133
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:1857502 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968 (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349
JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in
ISO MGI:3614797 (MGI:4459001|PMID:20346937)
(MGI:3613215|PMID:16326386)
RGD PMID:16326386 PMID:20346937 MGI:3613215 MGI:4459001 NCBI chr 8:87,974,444...87,978,996
Ensembl chr 8:87,974,776...87,978,969
JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1858049 (MGI:1195384|PMID:9420335)
Ensembl
RGD
PMID:9420335 GO_REF:0000107 MGI:1195384 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438
JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr 1:181,387,851...181,392,762
Ensembl chr 1:181,388,684...181,392,593
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO MGI:4456438 (MGI:4453264|PMID:20178780) RGD PMID:20178780 MGI:4453264 NCBI chr12:32,052,542...32,061,596
Ensembl chr12:32,052,543...32,071,903
JBrowse link
specification of axis polarity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:F8W3V6 (MGI:5306539|PMID:21959375)
UniProt
RGD
PMID:21959375 GO_REF:0000024 MGI:5306539 NCBI chr 1:15,768,047...15,886,744
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Bcor BCL6 co-repressor involved_in ISO (PMID:17517692) RGD PMID:17517692 NCBI chr  X:10,609,756...10,729,613
Ensembl chr  X:10,687,732...10,729,613
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592
JBrowse link
G Wt1 WT1 transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:62488|PMID:8395349)
UniProt
RGD
PMID:8395349 GO_REF:0000024 MGI:62488 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643
JBrowse link
transforming growth factor beta receptor signaling pathway involved in primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:2677178 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2181754|MGI:97359 (MGI:1858546|PMID:10809672)
Ensembl
RGD
PMID:10809672 GO_REF:0000107 MGI:1858546 NCBI chr 1:119,428,978...119,627,626
Ensembl chr 1:119,429,265...119,627,596
JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 involved_in ISO (PMID:9436979) RGD PMID:9436979 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323
JBrowse link
G Smad6 SMAD family member 6 involved_in ISO (PMID:9436979) RGD PMID:9436979 NCBI chr 8:64,450,114...64,519,673
Ensembl chr 8:64,450,114...64,519,763
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19541
    multicellular organismal process 9044
      pattern specification process 502
        axis specification 103
          adaxial/abaxial axis specification + 0
          anterior/posterior axis specification + 61
          anterior/posterior axis specification, follicular epithelium 0
          centrolateral axis specification 0
          dorsal/ventral axis specification + 13
          embryonic axis specification + 48
          establishment of anatomical structure orientation + 3
          growth plate cartilage axis specification 1
          left/right axis specification 14
          oocyte axis specification + 8
          proximal/distal axis specification + 4
          radial axis specification 0
          specification of axis polarity + 5
Path 2
Term Annotations click to browse term
  biological_process 19541
    developmental process 6920
      anatomical structure development 6337
        multicellular organism development 5765
          pattern specification process 502
            axis specification 103
              adaxial/abaxial axis specification + 0
              anterior/posterior axis specification + 61
              anterior/posterior axis specification, follicular epithelium 0
              centrolateral axis specification 0
              dorsal/ventral axis specification + 13
              embryonic axis specification + 48
              establishment of anatomical structure orientation + 3
              growth plate cartilage axis specification 1
              left/right axis specification 14
              oocyte axis specification + 8
              proximal/distal axis specification + 4
              radial axis specification 0
              specification of axis polarity + 5
paths to the root