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ONTOLOGY REPORT - ANNOTATIONS

Term:axis specification
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Accession:GO:0009798 term browser browse the term
Definition:The establishment, maintenance and elaboration of a pattern along a line or around a point.
Synonyms:related_synonym: axis determination

show annotations for term's descendants           Sort by:
 
axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO MGI:2449944 (MGI:2449253|PMID:12645927) RGD PMID:12645927 MGI:2449253 NCBI chr18:27,011,710...27,106,323
Ensembl chr18:27,047,382...27,105,531 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 ISO MGI:3513254 (MGI:3715395|PMID:17531978) RGD PMID:17531978 MGI:3715395 NCBI chr 8:94,676,579...94,691,125
Ensembl chr 8:94,686,938...94,691,041 		JBrowse link
G Wnt6 Wnt family member 6 ISO (MGI:2178881|PMID:11948913) RGD PMID:11948913 MGI:2178881 NCBI chr 9:82,033,543...82,047,172
Ensembl chr 9:82,033,543...82,047,166 		JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aurka aurora kinase A involved_in IEA
ISO		 GO_REF:0000107
MGI:3836420 (MGI:5449118|PMID:22939930)		 Ensembl
RGD		 PMID:22939930 GO_REF:0000107 MGI:5449118 NCBI chr 3:170,364,177...170,380,278
Ensembl chr 3:170,364,181...170,378,210 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO		 GO_REF:0000107
MGI:104903 (MGI:1889107|PMID:10964473)		 Ensembl
RGD		 PMID:10964473 GO_REF:0000107 MGI:1889107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740 		JBrowse link
G Cdx1 caudal type homeo box 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr18:56,337,485...56,355,477
Ensembl chr18:56,338,336...56,355,490 		JBrowse link
G Cdx2 caudal type homeo box 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565 		JBrowse link
G Cdx4 caudal type homeo box 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:74,165,172...74,173,758
Ensembl chr  X:74,165,187...74,173,347 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist ISO MGI:107405|MGI:98658 (MGI:3042338|PMID:15004567), (MGI:3776330|PMID:18241853) RGD PMID:15004567 PMID:18241853 MGI:3042338 MGI:3776330 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:2148590 (MGI:1353237|PMID:10662781)		 Ensembl
RGD		 PMID:10662781 GO_REF:0000107 MGI:1353237 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372 		JBrowse link
G Ddit3 DNA-damage inducible transcript 3 involved_in IEA
ISO		 GO_REF:0000107
(MGI:4821075|PMID:16434966)		 Ensembl
RGD		 PMID:16434966 GO_REF:0000107 MGI:4821075 NCBI chr 7:70,578,564...70,585,074
Ensembl chr 7:70,580,198...70,585,084 		JBrowse link
G Gpc3 glypican 3 involved_in IEA
ISO		 GO_REF:0000107
MGI:88180 (MGI:1889107|PMID:10964473)		 Ensembl
RGD		 PMID:10964473 GO_REF:0000107 MGI:1889107 NCBI chr  X:139,579,268...139,947,093
Ensembl chr  X:139,579,268...139,916,883 		JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO MGI:1341884 (MGI:3530185|PMID:15680351) RGD PMID:15680351 MGI:3530185 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO MGI:1341800 (MGI:3530185|PMID:15680351) RGD PMID:15680351 MGI:3530185 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531 		JBrowse link
G Ldb1 LIM domain binding 1 ISO MGI:2449177 (MGI:2448170|PMID:12490556) RGD PMID:12490556 MGI:2448170 NCBI chr 1:265,772,729...265,798,442
Ensembl chr 1:265,785,409...265,798,167 		JBrowse link
G Lefty1 left right determination factor 1 ISO MGI:1201414 (MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:3042338 NCBI chr13:99,212,778...99,217,786
Ensembl chr13:99,214,389...99,217,786 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
ISO		 GO_REF:0000024
MGI:97449 (MGI:1346311|PMID:10529425)		 UniProt
RGD		 PMID:10529425 GO_REF:0000024 MGI:1346311 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293 		JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096 		JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 ISO MGI:1856621|MGI:99783 (MGI:1346311|PMID:10529425) RGD PMID:10529425 MGI:1346311 NCBI chr 9:61,066,170...61,134,963
Ensembl chr 9:61,066,175...61,134,963 		JBrowse link
G Rnf2 ring finger protein 2 involved_in IEA
ISO		 GO_REF:0000107
MGI:2447529 (MGI:2389282|PMID:12183370)		 Ensembl
RGD		 PMID:12183370 GO_REF:0000107 MGI:2389282 NCBI chr13:68,829,714...68,859,920
Ensembl chr13:68,830,620...68,858,809 		JBrowse link
G Six2 SIX homeobox 2 ISO (MGI:3794506|PMID:18321982) RGD PMID:18321982 MGI:3794506 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276 		JBrowse link
G Ski SKI proto-oncogene ISO MGI:2177555 (MGI:2176418|PMID:11731796) RGD PMID:11731796 MGI:2176418 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899 		JBrowse link
G Tbx18 T-box transcription factor 18 ISO MGI:3044914 (MGI:3044041|PMID:15155583) RGD PMID:15155583 MGI:3044041 NCBI chr 8:95,359,354...95,387,363
Ensembl chr 8:95,359,354...95,387,363 		JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 ISO MGI:1201414 (MGI:3776330|PMID:18241853) RGD PMID:18241853 MGI:3776330 NCBI chr 8:119,215,266...119,220,909
Ensembl chr 8:119,215,495...119,219,232 		JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISS
ISO		 GO_REF:0000024
(MGI:4397730|PMID:19841259)		 UniProt
RGD		 PMID:19841259 GO_REF:0000024 MGI:4397730 NCBI chr 2:266,315,036...266,431,220
Ensembl chr 2:266,315,036...266,432,558 		JBrowse link
G Wnt3 Wnt family member 3 ISO MGI:2450902 (MGI:3771246|PMID:18028899) RGD PMID:18028899 MGI:3771246 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 ISO MGI:3580390 (MGI:3580203|PMID:15870281) RGD PMID:15870281 MGI:3580203 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO
IEA		 (PMID:9054360)
GO_REF:0000107		 RGD
Ensembl		 PMID:9054360 GO_REF:0000107 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739 		JBrowse link
G Tasor transcription activation suppressor IEA
ISO		 GO_REF:0000107
(MGI:6109647|PMID:28839193)		 Ensembl
RGD		 PMID:28839193 GO_REF:0000107 MGI:6109647 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO
ISS		 (PMID:9207801)
GO_REF:0000024		 RGD
UniProt		 PMID:9207801 GO_REF:0000024 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 ISO MGI:3044616 (MGI:3043490|PMID:14668413) RGD PMID:14668413 MGI:3043490 NCBI chr 4:100,492,796...100,660,401
Ensembl chr 4:100,491,798...100,660,140 		JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 ISO MGI:1934206 (MGI:1303194|PMID:9790191) RGD PMID:9790191 MGI:1303194 NCBI chr 8:119,215,266...119,220,909
Ensembl chr 8:119,215,495...119,219,232 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO		 GO_REF:0000107
(MGI:4835157|PMID:9054360)		 Ensembl
RGD		 PMID:9054360 GO_REF:0000107 MGI:4835157 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860 		JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 ISO (MGI:1337175|PMID:10330403) RGD PMID:10330403 MGI:1337175
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2181295 (MGI:2670493|PMID:12923052) RGD PMID:12923052 MGI:2670493 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:2148594|MGI:2158470 (MGI:2670493|PMID:12923052)		 Ensembl
RGD		 PMID:12923052 GO_REF:0000107 MGI:2670493 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372 		JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:2156191 (MGI:3823171|PMID:18985738) RGD PMID:18985738 MGI:3823171 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751 		JBrowse link
G Mdfi MyoD family inhibitor ISO (MGI:4441142|PMID:11238923) RGD PMID:11238923 MGI:4441142 NCBI chr 9:15,166,118...15,184,469
Ensembl chr 9:15,166,118...15,184,468 		JBrowse link
G Pax6 paired box 6 involved_in IEA
ISO		 GO_REF:0000107
MGI:1856155|MGI:1934347 (MGI:1350715|PMID:10588713)		 Ensembl
RGD		 PMID:10588713 GO_REF:0000107 MGI:1350715 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624 		JBrowse link
G Senp2 SUMO specific peptidase 2 IDA RGD PMID:10944533 RGD:1299408 NCBI chr11:82,627,973...82,664,702
Ensembl chr11:82,630,436...82,664,630 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:9192640)		 Ensembl
RGD		 PMID:9192640 GO_REF:0000107 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777 		JBrowse link
G Vax2 ventral anterior homeobox 2 involved_in IEA
ISO		 GO_REF:0000107
MGI:2159246|MGI:2388160 (MGI:2157789|PMID:11830578), (MGI:2157790|PMID:11830579)		 Ensembl
RGD		 PMID:11830578 PMID:11830579 GO_REF:0000107 MGI:2157789 MGI:2157790 NCBI chr 4:115,388,839...115,412,515
Ensembl chr 4:115,388,839...115,412,515 		JBrowse link
G Wnt3 Wnt family member 3 ISO MGI:2450902|MGI:2450903 (MGI:2450015|PMID:12569130) RGD PMID:12569130 MGI:2450015 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793 		JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in IDA PMID:15843474 UniProt PMID:15843474, PMID:15843474 RGD:8554075, RGD:8554075 NCBI chr  X:72,128,996...72,133,692
Ensembl chr  X:72,128,994...72,133,692 		JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in ISO
IEA		 (PMID:7586755)
GO_REF:0000107		 RGD
Ensembl		 PMID:7586755 GO_REF:0000107 NCBI chr14:92,341,949...92,497,169
Ensembl chr14:92,342,957...92,577,936 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:894149|PMID:9230313)		 Ensembl
RGD		 PMID:9230313 GO_REF:0000107 MGI:894149 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372 		JBrowse link
G Frat1 FRAT regulator of WNT signaling pathway 1 ISO (MGI:1349209|PMID:10534617) RGD PMID:10534617 MGI:1349209 NCBI chr 1:261,071,965...261,075,244 JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:12121999) RGD PMID:12121999 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739 		JBrowse link
G Peg12 paternally expressed 12 ISO (MGI:1349209|PMID:10534617) RGD PMID:10534617 MGI:1349209 NCBI chr 1:123,097,861...123,100,464
Ensembl chr 1:123,097,861...123,100,464 		JBrowse link
G Stil STIL, centriolar assembly protein ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:133,819,302...133,851,362
Ensembl chr 5:133,819,726...133,851,416 		JBrowse link
G Wnt1 Wnt family member 1 ISO (MGI:4822553|PMID:2534596) RGD PMID:2534596 MGI:4822553 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) RGD PMID:16826533 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609 		JBrowse link
epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor ISO (MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096 		JBrowse link
establishment of anatomical structure orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ttc8 tetratricopeptide repeat domain 8 involved_in ISO (PMID:14520415) RGD PMID:14520415 NCBI chr 6:122,920,308...122,974,525
Ensembl chr 6:122,920,317...122,974,522 		JBrowse link
establishment of animal organ orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx4 iroquois homeobox 4 IEP RGD PMID:10882515 RGD:1582291 NCBI chr 1:32,634,774...32,645,151
Ensembl chr 1:32,634,796...32,643,771 		JBrowse link
G Wnt8a Wnt family member 8A ISO (MGI:3609071|PMID:16256739) RGD PMID:16256739 MGI:3609071 NCBI chr18:27,331,236...27,336,829
Ensembl chr18:27,331,236...27,336,829 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 involved_in ISO (PMID:16377640) RGD PMID:16377640 NCBI chr15:50,891,137...50,901,791
Ensembl chr15:50,891,127...50,903,162 		JBrowse link
left/right axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769 		JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B ISO MGI:3578151 (MGI:5430243|PMID:22554696) RGD PMID:22554696 MGI:5430243 NCBI chr 7:1,122,567...1,188,209
Ensembl chr 7:1,122,567...1,188,209 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO (MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:3054669 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:2661305|PMID:12730124)		 Ensembl
RGD		 PMID:12730124 GO_REF:0000107 MGI:2661305 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:3578147 (MGI:4838374|PMID:20678497) RGD PMID:20678497 MGI:4838374 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968 		JBrowse link
G Hspb11 heat shock protein family B (small), member 11 ISO MGI:4432759|MGI:5426875 (MGI:5426280|PMID:22595669) RGD PMID:22595669 MGI:5426280 NCBI chr 5:126,856,128...126,882,913
Ensembl chr 5:126,856,705...126,882,909 		JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:2682066|MGI:3829198 (MGI:3828200|PMID:18930042), (MGI:5430243|PMID:22554696) RGD PMID:18930042 PMID:22554696 MGI:3828200 MGI:5430243 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Mns1 meiosis-specific nuclear structural 1 ISO MGI:5425368 (MGI:5318625|PMID:22396656) RGD PMID:22396656 MGI:5318625 NCBI chr 8:79,054,240...79,075,119
Ensembl chr 8:79,054,237...79,075,122 		JBrowse link
G Notch1 notch receptor 1 ISO UniProtKB:O35516 (MGI:2661305|PMID:12730124) RGD PMID:12730124 MGI:2661305 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025 		JBrowse link
G Notch2 notch receptor 2 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:Q01705 (MGI:2661305|PMID:12730124)		 Ensembl
RGD		 PMID:12730124 GO_REF:0000107 MGI:2661305 NCBI chr 2:200,187,184...200,320,403
Ensembl chr 2:200,187,179...200,320,215 		JBrowse link
G Pitx2 paired-like homeodomain 2 ISO (MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:3054669 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129 		JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting ISO (MGI:4946570|PMID:21307093) RGD PMID:21307093 MGI:4946570 NCBI chr14:89,047,949...89,193,579
Ensembl chr14:89,060,447...89,179,507 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA
ISO		 GO_REF:0000107
MGI:2137553 (MGI:1267118|PMID:9636176)		 Ensembl
RGD		 PMID:9636176 GO_REF:0000107 MGI:1267118 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770 		JBrowse link
lung proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 ISO (MGI:3577664|PMID:15531758) RGD PMID:15531758 MGI:3577664 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369 		JBrowse link
negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 IDA RGD PMID:9566905 RGD:68736 NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:9192640)		 Ensembl
RGD		 PMID:9192640 GO_REF:0000107 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777 		JBrowse link
neural plate axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2cd3 C2 domain containing 3 centriole elongation regulator ISO (MGI:3821640|PMID:19004860) RGD PMID:19004860 MGI:3821640 NCBI chr 1:165,382,279...165,480,088
Ensembl chr 1:165,382,690...165,479,655 		JBrowse link
G Ptch1 patched 1 ISO (MGI:5142377|PMID:11517919) RGD PMID:11517919 MGI:5142377 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873 		JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 ISO (MGI:4943609|PMID:21397848) RGD PMID:21397848 MGI:4943609 NCBI chr10:46,142,313...46,145,774
Ensembl chr10:46,142,801...46,145,548 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:4946318|PMID:21383078)		 Ensembl
UniProt
RGD		 PMID:21383078 GO_REF:0000024 GO_REF:0000107 MGI:4946318 NCBI chr13:73,872,637...73,922,640
Ensembl chr13:73,872,621...73,921,969 		JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:5559673|PMID:11044396)		 Ensembl
UniProt
RGD		 PMID:11044396 GO_REF:0000024 GO_REF:0000107 MGI:5559673 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691 		JBrowse link
G Wnt8a Wnt family member 8A ISO (MGI:3609071|PMID:16256739) RGD PMID:16256739 MGI:3609071 NCBI chr18:27,331,236...27,336,829
Ensembl chr18:27,331,236...27,336,829 		JBrowse link
polarity specification of proximal/distal axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor ISO (MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096 		JBrowse link
G Wnt8a Wnt family member 8A ISO (MGI:3609071|PMID:16256739) RGD PMID:16256739 MGI:3609071 NCBI chr18:27,331,236...27,336,829
Ensembl chr18:27,331,236...27,336,829 		JBrowse link
pole plasm assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100911453 methylosome protein 50-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:208,420,223...208,430,276
Ensembl chr 2:208,420,309...208,587,260
Ensembl chr 2:208,420,309...208,587,260 		JBrowse link
G Wdr77 WD repeat domain 77 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:208,577,292...208,587,263
Ensembl chr 2:208,420,309...208,587,260 		JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor ISO MGI:1891557 (MGI:5546318|PMID:23552073) RGD PMID:23552073 MGI:5546318 NCBI chr11:36,075,709...36,092,495
Ensembl chr11:36,075,709...36,092,495 		JBrowse link
G Foxa2 forkhead box A2 involved_in ISS
ISO		 GO_REF:0000024
MGI:1857725 (MGI:2157654|PMID:11291865)		 UniProt
RGD		 PMID:11291865 GO_REF:0000024 MGI:2157654 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481 		JBrowse link
G Gdf3 growth differentiation factor 3 ISO MGI:3612535 (MGI:3611720|PMID:16368929) RGD PMID:16368929 MGI:3611720 NCBI chr 4:155,417,667...155,422,014
Ensembl chr 4:155,417,004...155,421,998 		JBrowse link
G Hhex hematopoietically expressed homeobox ISO MGI:4999724|MGI:97359 (MGI:4950786|PMID:21445260) RGD PMID:21445260 MGI:4950786 NCBI chr 1:256,101,994...256,107,581
Ensembl chr 1:256,101,903...256,107,649 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
ISO		 GO_REF:0000024
MGI:1857502|MGI:1857848 (MGI:2157654|PMID:11291865)		 UniProt
RGD		 PMID:11291865 GO_REF:0000024 MGI:2157654 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293 		JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in ISO
IBA		 MGI:98958 (MGI:4413372|PMID:19795512)
PMID:21873635		 RGD PMID:19795512, PMID:21873635, PMID:21873635 MGI:4413372, RGD:13792537, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751 		JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:96086 (MGI:4950786|PMID:21445260) RGD PMID:21445260 MGI:4950786 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096 		JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:1857502 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691 		JBrowse link
G Srf serum response factor ISO MGI:2158696 (MGI:1312998|PMID:9799237) RGD PMID:9799237 MGI:1312998 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO		 GO_REF:0000107
MGI:1298218 (MGI:4413372|PMID:19795512)		 Ensembl
RGD		 PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860 		JBrowse link
proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 ISO (MGI:5582181|PMID:12163408) RGD PMID:12163408 MGI:5582181 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925 		JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968 		JBrowse link
G Foxa2 forkhead box A2 ISO MGI:1857725 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481 		JBrowse link
G Gdf3 growth differentiation factor 3 ISO MGI:3612535 (MGI:3611720|PMID:16368929) RGD PMID:16368929 MGI:3611720 NCBI chr 4:155,417,667...155,422,014
Ensembl chr 4:155,417,004...155,421,998 		JBrowse link
G Kdm6a lysine demethylase 6A ISO MGI:5448825 (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr  X:4,805,493...4,945,788
Ensembl chr  X:4,806,277...4,945,944 		JBrowse link
G Lhx1 LIM homeobox 1 ISO MGI:1857502|MGI:1857848 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in ISO
IBA		 MGI:3580268 (MGI:4459001|PMID:20346937)
PMID:21873635		 RGD PMID:20346937, PMID:21873635, PMID:21873635 MGI:4459001, RGD:13792537, RGD:13792537 NCBI chr 1:141,550,633...141,553,239
Ensembl chr 1:141,550,633...141,553,230 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein ISO MGI:5438570 (MGI:5438472|PMID:21998026) RGD PMID:21998026 MGI:5438472 NCBI chr 3:2,396,143...2,398,697
Ensembl chr 3:2,396,143...2,398,689 		JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:1857502 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 ISO MGI:2685968 (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr  X:111,099,420...111,114,835
Ensembl chr  X:111,099,930...111,102,464 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 ISO MGI:3614797 (MGI:3613215|PMID:16326386), (MGI:4459001|PMID:20346937) RGD PMID:16326386 PMID:20346937 MGI:3613215 MGI:4459001 NCBI chr 8:94,676,579...94,691,125
Ensembl chr 8:94,686,938...94,691,041 		JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO		 GO_REF:0000107
MGI:1858049 (MGI:1195384|PMID:9420335)		 Ensembl
RGD		 PMID:9420335 GO_REF:0000107 MGI:1195384 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199 		JBrowse link
G Tbx6 T-box transcription factor 6 ISO (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr 1:198,214,797...198,218,706
Ensembl chr 1:198,214,797...198,218,706 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 ISO MGI:4456438 (MGI:4453264|PMID:20178780) RGD PMID:20178780 MGI:4453264 NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297 		JBrowse link
specification of axis polarity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:F8W3V6 (MGI:5306539|PMID:21959375)		 UniProt
RGD		 PMID:21959375 GO_REF:0000024 MGI:5306539 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769 		JBrowse link
G Bcor BCL6 co-repressor involved_in ISO (PMID:17517692) RGD PMID:17517692 NCBI chr  X:11,570,155...11,692,022
Ensembl chr  X:11,648,989...11,691,099 		JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISS
ISO		 GO_REF:0000024
(MGI:62488|PMID:8395349)		 UniProt
RGD		 PMID:8395349 GO_REF:0000024 MGI:62488 NCBI chr 3:95,133,221...95,180,574
Ensembl chr 3:95,133,713...95,180,564 		JBrowse link
transforming growth factor beta receptor signaling pathway involved in primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor ISO (MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096 		JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990 		JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 involved_in IEA
ISO		 GO_REF:0000107
MGI:2181754|MGI:97359 (MGI:1858546|PMID:10809672)		 Ensembl
RGD		 PMID:10809672 GO_REF:0000107 MGI:1858546 NCBI chr 1:126,749,508...126,947,392
Ensembl chr 1:126,749,508...126,947,392 		JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 involved_in ISO (PMID:9436979) RGD PMID:9436979 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078 		JBrowse link
G Smad6 SMAD family member 6 involved_in ISO (PMID:9436979) RGD PMID:9436979 NCBI chr 8:68,897,746...68,967,221
Ensembl chr 8:68,898,296...68,966,108 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20078
    multicellular organismal process 9072
      pattern specification process 496
        axis specification 96
          adaxial/abaxial axis specification + 0
          anterior/posterior axis specification + 57
          anterior/posterior axis specification, follicular epithelium 0
          centrolateral axis specification 0
          dorsal/ventral axis specification + 13
          embryonic axis specification + 42
          establishment of anatomical structure orientation + 3
          growth plate cartilage axis specification 1
          left/right axis specification 13
          oocyte axis specification + 4
          proximal/distal axis specification + 4
          radial axis specification 0
          specification of axis polarity + 5
Path 2
Term Annotations click to browse term
  biological_process 20078
    developmental process 6848
      anatomical structure development 6308
        multicellular organism development 5783
          pattern specification process 496
            axis specification 96
              adaxial/abaxial axis specification + 0
              anterior/posterior axis specification + 57
              anterior/posterior axis specification, follicular epithelium 0
              centrolateral axis specification 0
              dorsal/ventral axis specification + 13
              embryonic axis specification + 42
              establishment of anatomical structure orientation + 3
              growth plate cartilage axis specification 1
              left/right axis specification 13
              oocyte axis specification + 4
              proximal/distal axis specification + 4
              radial axis specification 0
              specification of axis polarity + 5
paths to the root