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ONTOLOGY REPORT - ANNOTATIONS


Term:embryo development
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Accession:GO:0009790 term browser browse the term
Definition:The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
Synonyms:exact_synonym: embryogenesis;   embryonal development
 synonym: Not4Curation
 broad_synonym: embryogenesis and morphogenesis
 alt_id: GO:0009795
 xref: Wikipedia:Embryogenesis



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activation of prostate induction by androgen receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AR androgen receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3714080|PMID:17317769) Ensembl
Ensembl
MGI
PMID:17317769 GO_REF:0000107 MGI:3714080 NCBI chr  X:53,609,113...53,806,778
Ensembl chr  X:53,609,176...53,805,578
JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASP3 caspase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5050793|PMID:21515572) Ensembl
MGI
Ensembl
PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr15:45,744,320...45,753,252
Ensembl chr15:45,742,749...45,763,773
JBrowse link
G FOLR1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) BHF-UCL PMID:17286298 MGI:3721767 NCBI chr 9:6,753,513...6,760,433
Ensembl chr 9:6,746,007...6,760,433
JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5050793|PMID:21515572) Ensembl
MGI
Ensembl
PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr 4:35,368,788...35,565,394
Ensembl chr 4:35,371,136...35,564,919
JBrowse link
G SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like acts_upstream_of_or_within ISO (MGI:6101898|PMID:26787558) MGI PMID:26787558 MGI:6101898 NCBI chr14:49,332,937...49,463,965 JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATAD2A GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chr 2:58,415,749...58,517,308
Ensembl chr 2:58,415,749...58,517,191
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:80520|PMID:8622765) MGI PMID:8622765 MGI:80520 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,477
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3580203|PMID:15870281) Ensembl
Ensembl
MGI
PMID:15870281 GO_REF:0000107 MGI:3580203 NCBI chr 5:33,725,432...33,852,952
Ensembl chr 5:33,725,444...33,849,976
JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:110,913,990...110,921,388
Ensembl chr15:110,911,567...110,921,353
JBrowse link
G TASOR transcription activation suppressor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:38,491,048...38,557,256
Ensembl chr13:38,491,055...38,557,931
JBrowse link
G TBX3 T-box transcription factor 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,767
JBrowse link
G TCF7L1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:3043490 NCBI chr 3:59,438,152...59,458,988 JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO (MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:1303194 NCBI chr13:29,537,874...29,544,686
Ensembl chr13:29,540,314...29,543,893
JBrowse link
G WNT5A Wnt family member 5A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3581932|PMID:15967824) MGI
Ensembl
PMID:15967824 GO_REF:0000107 MGI:3581932 NCBI chr 6:54,222,341...54,228,150
Ensembl chr 6:54,187,260...54,228,144
JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3581932|PMID:15967824) MGI
Ensembl
PMID:15967824 GO_REF:0000107 MGI:3581932 NCBI chr 3:45,156,791...45,202,996 JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3608163|PMID:16245338) Ensembl
Ensembl
MGI
PMID:16245338 GO_REF:0000107 MGI:3608163
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR96 microRNA mir-96 acts_upstream_of_or_within ISO (MGI:4353582|PMID:19363478) MGI PMID:19363478 MGI:4353582 NCBI chr18:18,982,506...18,982,590
Ensembl chr18:18,982,506...18,982,590
JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (MGI:4430014|PMID:20016102) MGI PMID:20016102 MGI:4430014 NCBI chr 3:4,781,776...4,803,510
Ensembl chr 3:4,781,771...4,803,687
JBrowse link
G SCRIB scribble planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chr 4:824,925...852,360 JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4439427|PMID:20215345) MGI
Ensembl
PMID:20215345 GO_REF:0000107 MGI:4439427 NCBI chr 8:112,670,529...112,762,870
Ensembl chr 8:112,670,533...112,762,858
JBrowse link
G SLITRK6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (MGI:4413621|PMID:19936227) MGI PMID:19936227 MGI:4413621 NCBI chr11:56,508,713...56,522,270
Ensembl chr11:56,508,709...56,522,212
JBrowse link
G WDPCP WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO (MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:5544506 NCBI chr 3:78,435,154...78,726,313 JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (MGI:3709803|PMID:11875276) MGI PMID:11875276 MGI:3709803 NCBI chr13:66,526,508...66,897,125
Ensembl chr13:66,528,322...66,897,128
JBrowse link
G CDH23 cadherin related 23 acts_upstream_of_or_within ISO (MGI:3625226|PMID:12121736)
(MGI:1929001|PMID:11138008), (MGI:3686545|PMID:17050716), (MGI:5468200|PMID:23217710)
(MGI:1933915|PMID:11322776)
(MGI:3526751|PMID:15537665)
(MGI:75953|PMID:7610888), (MGI:81497|PMID:8790740), (MGI:86134|PMID:9039475)
MGI PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... MGI:1929001 MGI:1933915 MGI:3526751 MGI:3625226 MGI:3686545 MGI:5468200 MGI:75953 MGI:81497 MGI:86134 NCBI chr14:74,267,547...74,734,623
Ensembl chr14:74,223,089...74,733,834
JBrowse link
G CLIC5 chloride intracellular channel 5 acts_upstream_of_or_within ISO (MGI:3663248|PMID:17021174) MGI PMID:17021174 MGI:3663248 NCBI chr 7:40,683,044...40,808,017
Ensembl chr 7:40,682,907...40,863,886
JBrowse link
G CLRN1 clarin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3849925|PMID:19414487), (MGI:4353469|PMID:19423712) Ensembl
Ensembl
MGI
PMID:19414487 PMID:19423712 GO_REF:0000107 MGI:3849925 MGI:4353469 NCBI chr13:91,104,850...91,152,397
Ensembl chr13:91,106,323...91,147,832
JBrowse link
G CLRN2 clarin 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:12,551,855...12,564,512
Ensembl chr 8:12,551,892...12,564,379
JBrowse link
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6278501|PMID:30380417) Ensembl
MGI
Ensembl
PMID:30380417 GO_REF:0000107 MGI:6278501 NCBI chr 2:147,215,061...147,231,792
Ensembl chr 2:147,216,279...147,232,250
JBrowse link
G LHFPL5 LHFPL tetraspan subfamily member 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578102|PMID:15905332)
(MGI:3759710|PMID:17876667), (MGI:5468200|PMID:23217710)
Ensembl
Ensembl
MGI
PMID:15905332 PMID:17876667 PMID:23217710 GO_REF:0000107 MGI:3578102 MGI:3759710 MGI:5468200 NCBI chr 7:31,624,050...31,642,269
Ensembl chr 7:31,623,849...31,642,268
JBrowse link
G MYO3A myosin IIIA involved_in ISO (MGI:5766107|PMID:26754646) MGI PMID:26754646 MGI:5766107 NCBI chr10:49,392,119...49,623,575 JBrowse link
G MYO3B myosin IIIB involved_in ISO (MGI:5766107|PMID:26754646) MGI PMID:26754646 MGI:5766107 NCBI chr15:76,432,429...76,855,443
Ensembl chr15:76,401,963...76,855,432
JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2156358|PMID:11753415)
(MGI:3686545|PMID:17050716)
(MGI:3625226|PMID:12121736)
Ensembl
MGI
Ensembl
PMID:11753415 PMID:12121736 PMID:17050716 GO_REF:0000107 MGI:2156358 MGI:3625226 MGI:3686545 NCBI chr 9:11,251,187...11,337,618
Ensembl chr 9:11,249,075...11,666,296
JBrowse link
G PCDH15 protocadherin related 15 acts_upstream_of_or_within ISO (MGI:5468200|PMID:23217710)
(MGI:3619110|PMID:11124469)
(MGI:3654702|PMID:16887306)
(MGI:1928787|PMID:10978835)
(MGI:3526751|PMID:15537665)
MGI PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 MGI:1928787 MGI:3526751 MGI:3619110 MGI:3654702 MGI:5468200 NCBI chr14:95,530,168...96,388,032 JBrowse link
G PDZD7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5565635|PMID:24334608)
GO_Central
GO_Central
MGI
PMID:21873635 PMID:24334608 MGI:5565635 NCBI chr14:112,088,332...112,111,348 JBrowse link
G PLS1 plastin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:83,307,692...83,434,133
Ensembl chr13:83,308,007...83,434,128
JBrowse link
G PRELID2 PRELI domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:147,101,820...147,191,736
Ensembl chr 2:147,109,581...147,191,638
JBrowse link
G REST RE1 silencing transcription factor involved_in ISO (MGI:6193260|PMID:29961578) UniProt PMID:29961578 MGI:6193260 NCBI chr 8:56,035,182...56,061,140
Ensembl chr 8:56,035,150...56,215,013
JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:19,609,358...19,842,345
Ensembl chr 7:19,587,685...19,838,093
JBrowse link
G SCRIB scribble planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chr 4:824,925...852,360 JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4439427|PMID:20215345) Ensembl
Ensembl
MGI
PMID:20215345 GO_REF:0000107 MGI:4439427 NCBI chr 8:112,670,529...112,762,870
Ensembl chr 8:112,670,533...112,762,858
JBrowse link
G SLC9A3R1 SLC9A3 regulator 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5578076|PMID:24920589) Ensembl
Ensembl
MGI
PMID:24920589 GO_REF:0000107 MGI:5578076 NCBI chr12:6,466,138...6,483,539
Ensembl chr12:6,466,120...6,493,428
JBrowse link
G SOD1 superoxide dismutase 1 involved_in
acts_upstream_of_or_within
IEA
ISS
ISO
(MGI:1344578|PMID:10466888), (MGI:3700629|PMID:10464373) Ensembl
Ensembl
UniProt
MGI
PMID:10464373 PMID:10466888 GO_REF:0000024 GO_REF:0000107 MGI:1344578 MGI:3700629 NCBI chr13:195,326,573...195,335,273
Ensembl chr13:195,326,649...195,337,749
JBrowse link
G STRC stereocilin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3818235|PMID:18849963) Ensembl
Ensembl
MGI
PMID:18849963 GO_REF:0000107 MGI:3818235 NCBI chr 1:127,830,759...127,852,392
Ensembl chr 1:127,821,905...127,852,339
JBrowse link
G TPRN taperin acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:6278501|PMID:30380417)
(PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:30380417 MGI:6278501
G TRIOBP TRIO and F-actin binding protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4881391|PMID:20510926) Ensembl
MGI
PMID:20510926 GO_REF:0000107 MGI:4881391 NCBI chr 5:10,066,080...10,132,668
Ensembl chr 5:10,066,086...10,126,491
JBrowse link
G WHRN whirlin involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:5796227|PMID:27117407)
GO_Central
GO_Central
Ensembl
MGI
PMID:21873635 PMID:27117407 GO_REF:0000107 MGI:5796227 NCBI chr 1:255,009,765...255,095,281
Ensembl chr 1:255,009,768...255,095,223
JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:894149|PMID:9230313) MGI
Ensembl
Ensembl
PMID:9230313 GO_REF:0000107 MGI:894149 NCBI chr 3:41,344,908...41,393,999
Ensembl chr 3:41,337,071...41,393,997
JBrowse link
G EPHA2 EPH receptor A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1934524|PMID:11287184) Ensembl
Ensembl
MGI
PMID:11287184 GO_REF:0000107 MGI:1934524 NCBI chr 6:75,251,465...75,279,364
Ensembl chr 6:75,251,467...75,279,314
JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2677178|PMID:14511481) Ensembl
Ensembl
MGI
PMID:14511481 GO_REF:0000107 MGI:2677178 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,349,965...73,360,618
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4839483|PMID:20630950) Ensembl
Ensembl
MGI
PMID:20630950 GO_REF:0000107 MGI:4839483 NCBI chr  X:57,150,884...57,174,367
Ensembl chr  X:57,150,578...57,175,352
JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1891551|PMID:11029008) Ensembl
Ensembl
MGI
PMID:11029008 GO_REF:0000107 MGI:1891551 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,154,086...51,202,176
JBrowse link
blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1B1 ATPase Na+/K+ transporting subunit beta 1 acts_upstream_of_or_within ISO MGI MGI:1888635 NCBI chr 4:81,912,543...81,937,015
Ensembl chr 4:81,911,558...81,997,714
JBrowse link
G BNIP2 BCL2 interacting protein 2 acts_upstream_of_or_within ISO (MGI:3848119|PMID:19117032) MGI PMID:19117032 MGI:3848119 NCBI chr 1:112,272,883...112,370,404
Ensembl chr 1:112,343,559...112,370,404
JBrowse link
G CAPN2 calpain 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3620446|PMID:16433929) Ensembl
Ensembl
MGI
PMID:16433929 GO_REF:0000107 MGI:3620446 NCBI chr10:19,758,824...19,820,241
Ensembl chr10:19,758,762...19,851,989
JBrowse link
G CDK11B cyclin-dependent kinase 11B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3041915|PMID:15060143) Ensembl
Ensembl
MGI
PMID:15060143 GO_REF:0000107 MGI:3041915 NCBI chr 6:63,804,914...63,819,960 JBrowse link
G CDX2 caudal type homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3578587|PMID:15788452) MGI
Ensembl
PMID:15788452 GO_REF:0000107 MGI:3578587 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057
JBrowse link
G DAD1 defender against cell death 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1858316|PMID:10748466) MGI
Ensembl
Ensembl
PMID:10748466 GO_REF:0000107 MGI:1858316 NCBI chr 7:76,432,040...76,457,403
Ensembl chr 7:76,432,029...76,457,192
JBrowse link
G DMBT1 deleted in malignant brain tumors 1 acts_upstream_of_or_within ISO (MGI:3057099|PMID:15452149) MGI PMID:15452149 MGI:3057099 NCBI chr14:132,154,346...132,231,274 JBrowse link
G ELF3 E74 like ETS transcription factor 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624255|PMID:16630543) Ensembl
Ensembl
MGI
PMID:16630543 GO_REF:0000107 MGI:3624255 NCBI chr10:24,237,852...24,242,266
Ensembl chr10:24,237,068...24,243,058
JBrowse link
G EMG1 EMG1 N1-specific pseudouridine methyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4839400|PMID:20858271) Ensembl
Ensembl
MGI
PMID:20858271 GO_REF:0000107 MGI:4839400 NCBI chr 5:63,746,326...63,751,469
Ensembl chr 5:63,745,476...63,751,469
JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within ISO (MGI:3578587|PMID:15788452) MGI PMID:15788452 MGI:3578587 NCBI chr13:14,209,590...14,216,184
Ensembl chr13:14,210,083...14,215,797
JBrowse link
G ETV2 ETS variant transcription factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624255|PMID:16630543) MGI
Ensembl
Ensembl
PMID:16630543 GO_REF:0000107 MGI:3624255 NCBI chr 6:45,085,984...45,089,592
Ensembl chr 6:45,088,171...45,089,595
JBrowse link
G G2E3 G2/M-phase specific E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (MGI:3807157|PMID:18511420) MGI PMID:18511420 MGI:3807157 NCBI chr 7:68,854,410...68,917,070
Ensembl chr 7:68,852,774...68,917,029
JBrowse link
G GDF9 growth differentiation factor 9 involved_in IMP (PMID:24313324) AgBase
AgBase
PMID:24313324 NCBI chr 2:135,181,494...135,184,451
Ensembl chr 2:135,180,104...135,186,389
JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:68,679,977...68,683,346
Ensembl chr16:68,677,963...68,683,342
JBrowse link
G HNF1A HNF1 homeobox A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3653309|PMID:16880268) Ensembl
Ensembl
MGI
PMID:16880268 GO_REF:0000107 MGI:3653309 NCBI chr14:40,868,819...40,888,322
Ensembl chr14:40,868,676...40,888,328
JBrowse link
G HORMAD1 HORMA domain containing 1 involved_in IEA
ISS
Ensembl
Ensembl
UniProt
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:98,447,298...98,469,650
Ensembl chr 4:98,449,891...98,469,650
JBrowse link
G KPNA7 karyopherin subunit alpha 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913752|PMID:20699224) Ensembl
Ensembl
MGI
PMID:20699224 GO_REF:0000107 MGI:5913752 NCBI chr 3:6,167,382...6,201,282
Ensembl chr 3:6,167,385...6,296,230
JBrowse link
G MED21 mediator complex subunit 21 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1345774|PMID:10500093) Ensembl
Ensembl
MGI
PMID:10500093 GO_REF:0000107 MGI:1345774 NCBI chr 5:46,704,358...46,736,434
Ensembl chr 5:46,725,564...46,736,389
JBrowse link
G N4BP2L2 NEDD4 binding protein 2 like 2 acts_upstream_of_or_within ISO (MGI:3797340|PMID:18360097) MGI PMID:18360097 MGI:3797340 NCBI chr11:8,891,053...8,997,810 JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (MGI:3694318|PMID:16728391) UniProt PMID:16728391 MGI:3694318 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G NEK2 NIMA related kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3848119|PMID:19117032) Ensembl
Ensembl
MGI
PMID:19117032 GO_REF:0000107 MGI:3848119 NCBI chr 9:131,547,044...131,560,527
Ensembl chr 9:131,547,084...131,560,527
JBrowse link
G NLRP9 NLR family pyrin domain containing 9 acts_upstream_of_or_within ISO (MGI:6507372|PMID:32413845) MGI PMID:32413845 MGI:6507372 NCBI chr 6:59,941,318...59,974,129
Ensembl chr 6:59,949,004...59,973,856
JBrowse link
G NPM2 nucleophosmin/nucleoplasmin 2 involved_in ISO (PMID:12714744) UniProt PMID:12714744 NCBI chr14:6,288,422...6,303,750
Ensembl chr14:6,289,337...6,303,748
JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21258368) BHF-UCL
Ensembl
PMID:21258368 GO_REF:0000107 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 acts_upstream_of_or_within ISO (MGI:1860964|PMID:10945464) MGI PMID:10945464 MGI:1860964 NCBI chr 2:15,185,482...15,191,189
Ensembl chr 2:15,066,547...15,193,085
JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1860964|PMID:10945464) Ensembl
Ensembl
MGI
PMID:10945464 GO_REF:0000107 MGI:1860964 NCBI chr 6:48,406,237...48,414,470
Ensembl chr 6:48,406,376...48,416,216
JBrowse link
G RPL13 ribosomal protein L13 acts_upstream_of ISO (MGI:6116315|PMID:26902285) MGI PMID:26902285 MGI:6116315 NCBI chr 6:410,923...413,396 JBrowse link
G RRM2 ribonucleotide reductase regulatory subunit M2 acts_upstream_of ISO (MGI:6116315|PMID:26902285) MGI PMID:26902285 MGI:6116315 NCBI chr 3:126,357,198...126,367,145 JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1932782|PMID:11263494)
(MGI:1933896|PMID:11313485)
MGI
Ensembl
PMID:11263494 PMID:11313485 GO_REF:0000107 MGI:1932782 MGI:1933896 NCBI chr14:49,874,981...49,906,043
Ensembl chr14:49,874,984...49,906,048
JBrowse link
G SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6726619|PMID:34166821) Ensembl
MGI
PMID:34166821 GO_REF:0000107 MGI:6726619 NCBI chr12:59,466,778...59,705,602
Ensembl chr12:59,466,791...59,654,130
JBrowse link
G SPIC Spi-C transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624255|PMID:16630543) Ensembl
Ensembl
MGI
PMID:16630543 GO_REF:0000107 MGI:3624255 NCBI chr 5:82,724,322...82,793,527
Ensembl chr 5:82,726,322...82,795,817
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1326851|PMID:9921650) Ensembl
Ensembl
MGI
PMID:9921650 GO_REF:0000107 MGI:1326851 NCBI chr 1:240,842,735...240,918,267
Ensembl chr 1:240,859,270...240,918,528
JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (MGI:1326851|PMID:9921650) MGI PMID:9921650 MGI:1326851 NCBI chr 4:125,109,939...125,310,788
Ensembl chr 4:125,101,190...125,316,796
JBrowse link
G THOC2 THO complex 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5529717|PMID:24315442) MGI
Ensembl
PMID:24315442 GO_REF:0000107 MGI:5529717 NCBI chr  X:101,170,969...101,284,623
Ensembl chr  X:101,171,362...101,284,552
JBrowse link
G XAB2 XPA binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3574001|PMID:15725628) Ensembl
Ensembl
MGI
PMID:15725628 GO_REF:0000107 MGI:3574001 NCBI chr 2:71,521,034...71,530,468
Ensembl chr 2:71,521,080...71,530,930
JBrowse link
G YAP1 Yes1 associated transcriptional regulator involved_in
acts_upstream_of
IEA
ISO
(MGI:6116315|PMID:26902285) Ensembl
MGI
PMID:26902285 GO_REF:0000107 MGI:6116315 NCBI chr 9:32,811,629...32,924,926
Ensembl chr 9:32,811,416...32,925,603
JBrowse link
blastocyst formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr13:117,598,415...117,627,311
Ensembl chr13:117,598,493...117,628,493
JBrowse link
G BYSL bystin like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3700849|PMID:17242206) MGI
Ensembl
PMID:17242206 GO_REF:0000107 MGI:3700849 NCBI chr 7:37,074,517...37,086,753
Ensembl chr 7:37,074,515...37,088,533
JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3757893|PMID:17784788) Ensembl
Ensembl
MGI
PMID:17784788 GO_REF:0000107 MGI:3757893 NCBI chr 7:78,553,680...78,576,057
Ensembl chr 7:78,553,764...78,575,516
JBrowse link
G FURIN furin, paired basic amino acid cleaving enzyme involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:53,455,634...53,472,791
Ensembl chr 7:53,460,017...53,472,790
JBrowse link
G GABPA GA binding protein transcription factor subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr13:189,289,513...189,327,501
Ensembl chr13:189,278,149...189,327,500
JBrowse link
G KDM4C lysine demethylase 4C acts_upstream_of_or_within ISO (MGI:4421125|PMID:19696013) MGI PMID:19696013 MGI:4421125 NCBI chr 1:215,071,335...215,507,778
Ensembl chr 1:215,071,334...215,507,800
JBrowse link
G MATR3 matrin 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5913376|PMID:27869233) MGI
Ensembl
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 2:141,179,515...141,230,259 JBrowse link
G MFN2 mitofusin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3587532|PMID:16083859) Ensembl
Ensembl
MGI
PMID:16083859 GO_REF:0000107 MGI:3587532 NCBI chr 6:72,026,512...72,056,439
Ensembl chr 6:72,026,722...72,056,439
JBrowse link
G MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 5:10,319,821...10,334,500
Ensembl chr 5:10,319,814...10,344,833
JBrowse link
G MXI1 MAX interactor 1, dimerization protein acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr14:120,643,691...120,722,632
Ensembl chr14:120,643,793...120,722,626
JBrowse link
G NOP2 NOP2 nucleolar protein acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr 5:64,106,013...64,115,582
Ensembl chr 5:64,105,223...64,115,463
JBrowse link
G PBRM1 polybromo 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr13:34,689,718...34,821,117
Ensembl chr13:34,689,721...34,820,957
JBrowse link
G PNLDC1 PARN like ribonuclease domain containing exonuclease 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 1:7,560,084...7,580,062
Ensembl chr 1:7,560,241...7,579,254
JBrowse link
G PRICKLE2 prickle planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:5319591|PMID:22333836) MGI PMID:22333836 MGI:5319591 NCBI chr13:45,620,372...45,968,295
Ensembl chr13:45,620,367...45,968,152
JBrowse link
G PTPN18 protein tyrosine phosphatase non-receptor type 18 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr15:31,945,901...31,966,571
Ensembl chr15:31,945,897...31,965,748
JBrowse link
G RPL7L1 ribosomal protein L7 like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:23211737 PMID:27869233 GO_REF:0000107 MGI:5605165 MGI:5913376 NCBI chr 7:37,940,549...37,948,258
Ensembl chr 7:37,933,535...37,953,078
JBrowse link
G RRP7A ribosomal RNA processing 7 homolog A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) MGI
Ensembl
Ensembl
PMID:23211737 PMID:27869233 GO_REF:0000107 MGI:5605165 MGI:5913376 NCBI chr 5:6,208,495...6,217,381
Ensembl chr 5:6,208,452...6,217,374
JBrowse link
G RTN4 reticulon 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 3:86,180,022...86,252,126
Ensembl chr 3:86,180,047...86,252,122
JBrowse link
G SF3B1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) MGI PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr15:101,274,968...101,338,018
Ensembl chr15:101,191,854...101,338,023
JBrowse link
G SF3B6 splicing factor 3b subunit 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:23211737 PMID:27869233 GO_REF:0000107 MGI:5605165 MGI:5913376 NCBI chr 3:114,605,863...114,618,123
Ensembl chr 3:114,605,970...114,620,590
JBrowse link
G SKIL SKI like proto-oncogene involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1858539|PMID:10811619) Ensembl
Ensembl
MGI
PMID:10811619 GO_REF:0000107 MGI:1858539 NCBI chr13:109,029,831...109,059,176
Ensembl chr13:109,029,952...109,059,176
JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr12:44,916,716...44,940,732
Ensembl chr12:44,906,858...44,952,427
JBrowse link
G TEAD4 TEA domain transcription factor 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3811945|PMID:18804437) MGI
Ensembl
PMID:18804437 GO_REF:0000107 MGI:3811945 NCBI chr 5:67,130,392...67,167,579
Ensembl chr 5:67,118,289...67,194,343
JBrowse link
G TJP1 tight junction protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3797149|PMID:18423437) Ensembl
Ensembl
MGI
PMID:18423437 GO_REF:0000107 MGI:3797149 NCBI chr 1:144,930,387...145,195,857
Ensembl chr 1:144,930,368...145,195,836
JBrowse link
G TM4SF1 transmembrane 4 L six family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr13:89,591,105...89,600,060
Ensembl chr13:89,591,104...89,600,027
JBrowse link
G TXNRD3 thioredoxin reductase 3 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr13:73,276,249...73,336,782
Ensembl chr13:73,275,911...73,340,428
JBrowse link
G USPL1 ubiquitin specific peptidase like 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr11:7,321,187...7,361,280
Ensembl chr11:7,321,201...7,361,573
JBrowse link
G WDR74 WD repeat domain 74 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5287298|PMID:21799883), (MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:21799883 PMID:27869233 GO_REF:0000107 MGI:5287298 MGI:5913376 NCBI chr 2:8,931,530...8,936,908
Ensembl chr 2:8,928,980...8,937,611
JBrowse link
G ZP3 zona pellucida glycoprotein 3 involved_in IEA
ISS
Ensembl
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:9,934,760...9,944,924
Ensembl chr 3:9,934,761...9,944,941
JBrowse link
blastocyst growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5528755|PMID:24036311) Ensembl
Ensembl
MGI
PMID:24036311 GO_REF:0000107 MGI:5528755 NCBI chr 2:48,700,629...48,729,480
Ensembl chr 2:48,697,972...48,729,307
JBrowse link
G INTS1 integrator complex subunit 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3722560|PMID:17544522) MGI
Ensembl
PMID:17544522 GO_REF:0000107 MGI:3722560 NCBI chr 3:979,403...1,005,584
Ensembl chr 3:979,404...1,005,566
JBrowse link
G NBN nibrin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:46,787,664...46,854,331
Ensembl chr 4:46,787,659...46,903,999
JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5528755|PMID:24036311) MGI
Ensembl
PMID:24036311 GO_REF:0000107 MGI:5528755 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G RAD51B RAD51 paralog B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1349263|PMID:10567591) Ensembl
Ensembl
MGI
PMID:10567591 GO_REF:0000107 MGI:1349263 NCBI chr 7:91,592,413...92,301,383
Ensembl chr 7:91,592,424...92,345,294
JBrowse link
G RLN2 relaxin 2 involved_in IDA (PMID:21272344) CACAO
CACAO
PMID:21272344 NCBI chr 1:216,763,546...216,769,802 JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5528755|PMID:24036311) Ensembl
Ensembl
MGI
PMID:24036311 GO_REF:0000107 MGI:5528755 NCBI chr 1:129,886,798...129,942,845
Ensembl chr 1:129,886,800...129,942,982
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:1929360|PMID:11163203) MGI PMID:11163203 MGI:1929360 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,298
JBrowse link
G UBTFL1 upstream binding transcription factor like 1 acts_upstream_of_or_within ISO (MGI:4414743|PMID:19915186) MGI PMID:19915186 MGI:4414743 NCBI chr 9:23,060,755...23,069,983 JBrowse link
G ZNF830 zinc finger protein 830 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 Ensembl chr12:40,203,942...40,205,045 JBrowse link
blastocyst hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP3 A-kinase anchoring protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 5:65,788,744...65,816,031
Ensembl chr 5:65,656,289...65,842,142
JBrowse link
G ANKRD7 ankyrin repeat domain 7 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr18:28,098,184...28,109,802 JBrowse link
G ARHGDIG Rho GDP dissociation inhibitor gamma involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 3:41,397,640...41,402,095
Ensembl chr 3:41,397,642...41,400,120
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G BCOR BCL6 corepressor acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr  X:35,768,013...35,891,013 JBrowse link
G CCDC24 coiled-coil domain containing 24 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 6:167,301,560...167,305,471
Ensembl chr 6:167,301,562...167,305,255
JBrowse link
G CCDC62 coiled-coil domain containing 62 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr14:30,028,561...30,066,638
Ensembl chr14:29,997,197...30,066,273
JBrowse link
G CMTM3 CKLF like MARVEL transmembrane domain containing 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 6:27,308,146...27,320,449
Ensembl chr 6:27,308,141...27,317,308
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 2:48,700,629...48,729,480
Ensembl chr 2:48,697,972...48,729,307
JBrowse link
G GRN granulin precursor acts_upstream_of_or_within ISO (MGI:3589098|PMID:15901638) MGI PMID:15901638 MGI:3589098 NCBI chr12:18,893,772...18,900,444
Ensembl chr12:18,893,770...18,900,446
JBrowse link
G HCFC1 host cell factor C1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr  X:124,673,125...124,694,846 JBrowse link
G HS3ST6 heparan sulfate-glucosamine 3-sulfotransferase 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 3:40,029,927...40,038,803
Ensembl chr 3:40,017,161...40,041,393
JBrowse link
G LOC100512568 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr16:55,351,616...55,354,642
Ensembl chr16:55,351,727...55,352,725
JBrowse link
G LOC102164547 zinc finger protein 420 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr 6:46,479,566...46,530,528 JBrowse link
G LPAR6 lysophosphatidic acid receptor 6 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr11:19,216,305...19,220,913 JBrowse link
G NDUFA2 NADH:ubiquinone oxidoreductase subunit A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 2:142,359,000...142,361,126
Ensembl chr 2:142,359,007...142,361,131
JBrowse link
G NECAB1 N-terminal EF-hand calcium binding protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 4:45,981,777...46,239,673
Ensembl chr 4:45,982,106...46,239,729
JBrowse link
G PEMT phosphatidylethanolamine N-methyltransferase acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr12:60,880,367...60,919,279 JBrowse link
G PHF6 PHD finger protein 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr  X:110,249,010...110,311,503
Ensembl chr  X:110,159,873...110,303,017
JBrowse link
G PLPP4 phospholipid phosphatase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr14:130,277,217...130,424,632
Ensembl chr14:130,276,639...130,562,563
JBrowse link
G PPP4R4 protein phosphatase 4 regulatory subunit 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 7:115,412,457...115,523,232
Ensembl chr 7:115,412,448...115,522,688
JBrowse link
G RBBP8 RB binding protein 8, endonuclease acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3575978|PMID:15831459) MGI
Ensembl
Ensembl
PMID:15831459 GO_REF:0000107 MGI:3575978 NCBI chr 6:107,923,921...108,020,067
Ensembl chr 6:107,924,002...108,022,669
JBrowse link
G SLC25A34 solute carrier family 25 member 34 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 6:74,909,637...74,914,430
Ensembl chr 6:74,909,705...74,914,426
JBrowse link
G SLC35E2 solute carrier family 35 member E2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 6:63,820,804...63,842,400
Ensembl chr 6:63,820,812...63,835,561
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:1929360|PMID:11163203) MGI PMID:11163203 MGI:1929360 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,298
JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1932782|PMID:11263494)
(MGI:1933896|PMID:11313485)
Ensembl
Ensembl
MGI
PMID:11263494 PMID:11313485 GO_REF:0000107 MGI:1932782 MGI:1933896 NCBI chr14:49,874,981...49,906,043
Ensembl chr14:49,874,984...49,906,048
JBrowse link
G SMIM14 small integral membrane protein 14 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr 8:30,765,417...30,840,416
Ensembl chr 8:30,765,418...30,840,363
JBrowse link
G ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr10:43,601,677...43,755,154
Ensembl chr10:43,601,674...43,755,140
JBrowse link
G STMN3 stathmin 3 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr17:62,600,450...62,609,851
Ensembl chr17:62,551,171...62,608,843
JBrowse link
G SUDS3 SDS3 homolog, SIN3A corepressor complex component acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr14:34,241,220...34,317,092
Ensembl chr14:34,156,339...34,317,234
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr  X:42,797,309...42,811,457
Ensembl chr  X:42,797,828...42,814,003
JBrowse link
G TBL1XR1 TBL1X/Y related 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr13:115,312,444...115,488,228
Ensembl chr13:115,317,263...115,488,176
JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr  X:97,925,136...98,007,551
Ensembl chr  X:97,925,131...98,013,194
JBrowse link
G WDR11 WD repeat domain 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:130,618,924...130,674,536
Ensembl chr14:130,511,592...130,674,541
JBrowse link
G ZFP14 ZFP14 zinc finger protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 6:45,987,660...46,015,668
Ensembl chr 6:45,987,751...46,014,350
JBrowse link
BMP signaling pathway involved in mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ETV2 ETS variant transcription factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4415813|PMID:18462699) MGI
Ensembl
Ensembl
PMID:18462699 GO_REF:0000107 MGI:4415813 NCBI chr 6:45,085,984...45,089,592
Ensembl chr 6:45,088,171...45,089,595
JBrowse link
branching involved in labyrinthine layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADM adrenomedullin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3689296|PMID:16981008) Ensembl
Ensembl
MGI
PMID:16981008 GO_REF:0000107 MGI:3689296 NCBI chr 2:49,229,223...49,231,521
Ensembl chr 2:49,229,223...49,231,866
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:1197797|PMID:9435295) MGI
UniProt
PMID:9435295 GO_REF:0000024 MGI:1197797 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,710...131,579,703
JBrowse link
G FZD5 frizzled class receptor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5494335|PMID:23610556) Ensembl
Ensembl
MGI
PMID:23610556 GO_REF:0000107 MGI:5494335 NCBI chr15:110,913,990...110,921,388
Ensembl chr15:110,911,567...110,921,353
JBrowse link
G GCM1 glial cells missing transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1860502|PMID:10888880) Ensembl
Ensembl
MGI
PMID:10888880 GO_REF:0000107 MGI:1860502 NCBI chr 7:46,767,498...46,798,317
Ensembl chr 7:46,767,542...46,813,649
JBrowse link
G GRB2 growth factor receptor bound protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1934095|PMID:11369229) Ensembl
Ensembl
MGI
PMID:11369229 GO_REF:0000107 MGI:1934095 NCBI chr12:5,940,723...6,009,095
Ensembl chr12:5,940,647...6,010,835
JBrowse link
G IL10 interleukin 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3664708|PMID:12842419) Ensembl
Ensembl
MGI
PMID:12842419 GO_REF:0000107 MGI:3664708 NCBI chr 9:67,400,727...67,405,941
Ensembl chr 9:67,400,727...67,405,711
JBrowse link
G LLGL2 LLGL scribble cell polarity complex component 2 acts_upstream_of_or_within ISO (MGI:5052233|PMID:21606200) MGI PMID:21606200 MGI:5052233 NCBI chr12:5,809,066...5,846,165
Ensembl chr12:5,809,068...5,846,182
JBrowse link
G RSPO3 R-spondin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3695333|PMID:16963017) Ensembl
Ensembl
MGI
PMID:16963017 GO_REF:0000107 MGI:3695333 NCBI chr 1:35,985,985...36,066,432
Ensembl chr 1:35,984,949...36,067,079
JBrowse link
G SOCS3 suppressor of cytokine signaling 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2137984|PMID:11481489) Ensembl
Ensembl
MGI
PMID:11481489 GO_REF:0000107 MGI:2137984 NCBI chr12:3,643,832...3,647,015
Ensembl chr12:3,643,929...3,647,012
JBrowse link
G SPINT1 serine peptidase inhibitor, Kunitz type 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3700412|PMID:17174946) Ensembl
Ensembl
MGI
PMID:17174946 GO_REF:0000107 MGI:3700412 NCBI chr 1:130,458,909...130,473,791
Ensembl chr 1:130,458,909...130,473,783
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:6260081|PMID:30236446) MGI PMID:30236446 MGI:6260081 NCBI chr14:29,390,903...29,400,454
Ensembl chr14:29,390,335...29,400,437
JBrowse link
cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EOMES eomesodermin involved_in ISO (MGI:1354065|PMID:10716450) UniProt PMID:10716450 MGI:1354065 NCBI chr13:14,209,590...14,216,184
Ensembl chr13:14,210,083...14,215,797
JBrowse link
G GCM1 glial cells missing transcription factor 1 involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:1860502|PMID:10888880)
GO_Central
Ensembl
GO_Central
MGI
PMID:10888880 PMID:21873635 GO_REF:0000107 MGI:1860502 NCBI chr 7:46,767,498...46,798,317
Ensembl chr 7:46,767,542...46,813,649
JBrowse link
G KRT15 keratin 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:21,124,605...21,130,247
Ensembl chr12:21,124,705...21,130,245
JBrowse link
G KRT19 keratin 19 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1926669|PMID:11062258) MGI
Ensembl
PMID:11062258 GO_REF:0000107 MGI:1926669 NCBI chr12:21,115,453...21,119,115
Ensembl chr12:21,024,314...21,119,396
JBrowse link
G KRT8 keratin 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1926669|PMID:11062258) Ensembl
Ensembl
MGI
PMID:11062258 GO_REF:0000107 MGI:1926669 NCBI chr 5:18,172,423...18,180,277
Ensembl chr 5:18,170,354...18,180,404
JBrowse link
G STK3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4412133|PMID:19786569) Ensembl
Ensembl
MGI
PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr 4:38,011,802...38,306,777
Ensembl chr 4:37,945,597...38,306,775
JBrowse link
G STK4 serine/threonine kinase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4412133|PMID:19786569) Ensembl
Ensembl
MGI
PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr17:47,387,594...47,475,705
Ensembl chr17:47,376,115...47,475,718
JBrowse link
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU5F1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr 7:23,564,654...23,570,691 JBrowse link
cell migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMOT angiomotin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2655854|PMID:12676095) Ensembl
Ensembl
MGI
PMID:12676095 GO_REF:0000107 MGI:2655854 NCBI chr  X:92,581,995...92,647,872
Ensembl chr  X:92,582,046...92,647,857
JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3042338|PMID:15004567) Ensembl
Ensembl
MGI
PMID:15004567 GO_REF:0000107 MGI:3042338 NCBI chr 1:207,817,095...207,821,800
Ensembl chr 1:207,818,042...207,821,996
JBrowse link
G LOC100524517 left-right determination factor 2 acts_upstream_of_or_within ISO (MGI:3042338|PMID:15004567) MGI PMID:15004567 MGI:3042338 NCBI chr10:13,815,157...13,819,249 JBrowse link
G LRP5 LDL receptor related protein 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3045836|PMID:15142971) Ensembl
Ensembl
MGI
PMID:15142971 GO_REF:0000107 MGI:3045836 NCBI chr 2:4,533,721...4,653,997
Ensembl chr 2:4,533,593...4,653,945
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3045836|PMID:15142971) MGI PMID:15142971 MGI:3045836 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:49,572,905...49,619,120
Ensembl chr 6:49,577,403...49,618,921
JBrowse link
G MIXL1 Mix paired-like homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3695524|PMID:17151016) Ensembl
Ensembl
MGI
PMID:17151016 GO_REF:0000107 MGI:3695524 NCBI chr10:14,102,273...14,105,544
Ensembl chr10:14,102,395...14,104,982
JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr15:88,425,861...88,528,417
Ensembl chr15:88,425,141...88,528,231
JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3042338|PMID:15004567) Ensembl
Ensembl
MGI
PMID:15004567 GO_REF:0000107 MGI:3042338 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,349,965...73,360,618
JBrowse link
G RIC8A RIC8 guanine nucleotide exchange factor A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4849883|PMID:21069829) Ensembl
Ensembl
MGI
PMID:21069829 GO_REF:0000107 MGI:4849883 NCBI chr 2:32,135...37,682
Ensembl chr 2:32,215...39,360
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4946462|PMID:21146513) Ensembl
Ensembl
MGI
PMID:21146513 GO_REF:0000107 MGI:4946462 NCBI chr 4:76,854,218...76,857,143
Ensembl chr 4:76,852,230...76,857,139
JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1341493|PMID:10421635) Ensembl
Ensembl
MGI
PMID:10421635 GO_REF:0000107 MGI:1341493 NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,210...112,814,134
JBrowse link
cell-cell adhesion involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RIC8A RIC8 guanine nucleotide exchange factor A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4849883|PMID:21069829) Ensembl
Ensembl
MGI
PMID:21069829 GO_REF:0000107 MGI:4849883 NCBI chr 2:32,135...37,682
Ensembl chr 2:32,215...39,360
JBrowse link
chordate embryonic development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA1 BRCA1 DNA repair associated involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:707942|PMID:9171368)
GO_Central
GO_Central
Ensembl
MGI
PMID:9171368 PMID:21873635 GO_REF:0000107 MGI:707942 NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,855,570
JBrowse link
G BRCA2 BRCA2 DNA repair associated acts_upstream_of_or_within ISO (MGI:707942|PMID:9171368) MGI PMID:9171368 MGI:707942 NCBI chr11:8,805,950...8,858,128 JBrowse link
G CENPU centromere protein U acts_upstream_of_or_within ISO (MGI:5517606|PMID:23724000) MGI PMID:23724000 MGI:5517606 NCBI chr15:45,818,562...45,851,461
Ensembl chr15:45,818,943...45,851,441
JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:72,572,455...72,754,443
Ensembl chr 4:72,571,874...72,754,432
JBrowse link
G FAS Fas cell surface death receptor ISO RGD PMID:11331665 RGD:8686426 NCBI chr14:100,927,305...100,954,781 JBrowse link
G LIMS1 LIM zinc finger domain containing 1 acts_upstream_of_or_within ISO (MGI:3575965|PMID:15798193) MGI PMID:15798193 MGI:3575965 NCBI chr 3:47,607,737...47,704,921 JBrowse link
G TRIP6 thyroid hormone receptor interactor 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10826496) Ensembl
Ensembl
UniProt
PMID:10826496 GO_REF:0000107 NCBI chr 3:8,713,221...8,716,891
Ensembl chr 3:8,712,126...8,716,873
JBrowse link
G VEZT vezatin, adherens junctions transmembrane protein acts_upstream_of_or_within ISO (MGI:3610287|PMID:16199027) MGI PMID:16199027 MGI:3610287 NCBI chr 5:88,000,027...88,104,768
Ensembl chr 5:88,031,979...88,104,742
JBrowse link
chorio-allantoic fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP5 bone morphogenetic protein 5 involved_in ISO (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chr 7:25,344,924...25,468,430
Ensembl chr 7:25,344,822...25,470,470
JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:57,567,770...57,676,516
Ensembl chr17:57,584,091...57,676,944
JBrowse link
G CCN1 cellular communication network factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2446415|PMID:12446788) Ensembl
Ensembl
MGI
PMID:12446788 GO_REF:0000107 MGI:2446415 NCBI chr 4:130,392,404...130,395,179
Ensembl chr 4:130,392,404...130,395,150
JBrowse link
G DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO (MGI:1329806|PMID:10021343) MGI PMID:10021343 MGI:1329806 NCBI chr18:1,444,737...1,499,904
Ensembl chr18:1,444,737...1,630,889
JBrowse link
G ERF ETS2 repressor factor acts_upstream_of_or_within ISO (MGI:3718929|PMID:17502352) MGI PMID:17502352 MGI:3718929 NCBI chr 6:49,678,858...49,686,422
Ensembl chr 6:49,678,871...49,685,538
JBrowse link
G ITGA4 integrin subunit alpha 4 acts_upstream_of_or_within ISO (MGI:70927|PMID:7539359) MGI PMID:7539359 MGI:70927 NCBI chr15:86,942,054...87,028,428
Ensembl chr15:86,947,021...87,029,777
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1334099|PMID:10090727) Ensembl
Ensembl
MGI
PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr 8:113,824,511...113,944,078
Ensembl chr 8:113,824,547...113,944,078
JBrowse link
G VCAM1 vascular cell adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:70924|PMID:7539357)
(MGI:70297|PMID:7530222)
MGI PMID:7530222 PMID:7539357 MGI:70297 MGI:70924 NCBI chr 4:117,496,914...117,511,211
Ensembl chr 4:117,496,908...117,511,226
JBrowse link
G WNT7B Wnt family member 7B acts_upstream_of_or_within ISO (MGI:2150456|PMID:11543617) MGI PMID:11543617 MGI:2150456 NCBI chr 5:3,521,412...3,572,322
Ensembl chr 5:3,521,695...3,572,314
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3047495|PMID:15226444) Ensembl
Ensembl
MGI
PMID:15226444 GO_REF:0000107 MGI:3047495 NCBI chr 7:92,490,069...92,495,864
Ensembl chr 7:92,490,011...92,495,574
JBrowse link
chromatin reprogramming in the zygote term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL23 methyltransferase like 23 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:4,802,404...4,808,948
Ensembl chr12:4,804,027...4,808,911
JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MED18 mediator complex subunit 18 involved_in IEA UniProt GO_REF:0000104 NCBI chr 6:85,384,085...85,392,296
Ensembl chr 6:85,384,080...85,392,291
JBrowse link
G PHACTR4 phosphatase and actin regulator 4 involved_in IEA UniProt
Ensembl
UniProt
GO_REF:0000104 GO_REF:0000107 NCBI chr 6:85,411,993...85,529,441
Ensembl chr 6:85,412,180...85,528,746
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:129,797,438...129,800,568
Ensembl chr 3:129,798,704...129,800,329
JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTHRC1 collagen triple helix repeat containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3814781|PMID:18606138) Ensembl
Ensembl
MGI
PMID:18606138 GO_REF:0000107 MGI:3814781 NCBI chr 4:33,759,541...33,771,625
Ensembl chr 4:33,759,542...33,771,582
JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3589836|PMID:16116426) Ensembl
Ensembl
MGI
PMID:16116426 GO_REF:0000107 MGI:3589836 NCBI chr 6:63,617,787...63,628,965
Ensembl chr 6:63,617,789...63,629,229
JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3589836|PMID:16116426)
(MGI:3821448|PMID:19008950)
Ensembl
Ensembl
MGI
PMID:16116426 PMID:19008950 GO_REF:0000107 MGI:3589836 MGI:3821448 NCBI chr12:52,581,687...52,590,266
Ensembl chr12:52,579,765...52,590,292
JBrowse link
G DVL3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (MGI:3821448|PMID:19008950) MGI PMID:19008950 MGI:3821448 NCBI chr13:122,075,851...122,092,975
Ensembl chr13:122,076,003...122,092,971
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1335261|PMID:10072433) Ensembl
Ensembl
MGI
PMID:10072433 GO_REF:0000107 MGI:1335261 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,511...64,328,105
JBrowse link
G FRZB frizzled related protein acts_upstream_of_or_within ISO (MGI:3714704|PMID:17433286) MGI PMID:17433286 MGI:3714704 NCBI chr15:88,332,856...88,377,275
Ensembl chr15:88,332,858...88,377,248
JBrowse link
G FZD2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4837757|PMID:20940229) Ensembl
Ensembl
MGI
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr12:18,740,417...18,742,301
Ensembl chr12:18,740,653...18,742,420
JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709667|PMID:17395647) Ensembl
Ensembl
MGI
PMID:17395647 GO_REF:0000107 MGI:3709667 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4819429|PMID:20643356) Ensembl
Ensembl
MGI
PMID:20643356 GO_REF:0000107 MGI:4819429 NCBI chr 6:82,014,022...82,050,240
Ensembl chr 6:82,014,046...82,050,236
JBrowse link
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr18:45,477,561...45,480,306
Ensembl chr18:45,477,548...45,480,413
JBrowse link
G HPN hepsin involved_in ISO (MGI:5306554|PMID:20683358) UniProt PMID:20683358 MGI:5306554 NCBI chr 6:44,608,076...44,628,044
Ensembl chr 6:44,608,071...44,628,049
JBrowse link
G MYO3A myosin IIIA involved_in ISO (MGI:5766107|PMID:26754646) UniProt PMID:26754646 MGI:5766107 NCBI chr10:49,392,119...49,623,575 JBrowse link
G MYO3B myosin IIIB involved_in ISO (MGI:5766107|PMID:26754646) UniProt PMID:26754646 MGI:5766107 NCBI chr15:76,432,429...76,855,443
Ensembl chr15:76,401,963...76,855,432
JBrowse link
G NEUROG1 neurogenin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:137,763,091...137,766,787
Ensembl chr 2:137,765,942...137,766,682
JBrowse link
G PAX2 paired box 2 involved_in
acts_upstream_of_or_within
ISO (MGI:84247|PMID:8951055)
(MGI:4822275|PMID:20727173)
(MGI:3702803|PMID:16916509)
DFLAT
UniProt
MGI
PMID:8951055 PMID:16916509 PMID:20727173 MGI:3702803 MGI:4822275 MGI:84247 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,834,168...111,914,304
JBrowse link
G POU3F4 POU class 3 homeobox 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:66,765,044...66,766,642
Ensembl chr  X:66,765,066...66,766,160
JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4830023|PMID:20704721) Ensembl
Ensembl
MGI
PMID:20704721 GO_REF:0000107 MGI:4830023 NCBI chr 7:38,135,675...38,205,662
Ensembl chr 7:38,135,666...38,205,657
JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (MGI:4430014|PMID:20016102) MGI PMID:20016102 MGI:4430014 NCBI chr 3:4,781,776...4,803,510
Ensembl chr 3:4,781,771...4,803,687
JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2671031|PMID:12874121) Ensembl
Ensembl
MGI
PMID:12874121 GO_REF:0000107 MGI:2671031 NCBI chr 1:189,620,430...189,624,652
Ensembl chr 1:189,619,853...189,628,187
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:4454502|PMID:20346939) UniProt
UniProt
Ensembl
MGI
Ensembl
PMID:20346939 GO_REF:0000024 GO_REF:0000107 MGI:4454502 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within
involved_in
ISO (MGI:3765363|PMID:17825816)
(MGI:5284768|PMID:18231833)
MGI
UniProt
PMID:17825816 PMID:18231833 MGI:3765363 MGI:5284768 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,143...51,296,725
JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (MGI:3788971|PMID:18353863) MGI PMID:18353863 MGI:3788971 NCBI chr 1:53,836,939...53,867,460
Ensembl chr 1:53,837,454...53,867,475
JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:36,878,662...36,887,513
Ensembl chr12:36,878,675...36,887,513
JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:137,675,245...137,678,880
Ensembl chr 2:137,672,407...137,678,612
JBrowse link
G TSHR thyroid stimulating hormone receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3652455|PMID:10575115) Ensembl
Ensembl
MGI
PMID:10575115 GO_REF:0000107 MGI:3652455 NCBI chr 7:103,768,260...103,925,777
Ensembl chr 7:103,768,296...103,925,922
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3821448|PMID:19008950)
(MGI:3589836|PMID:16116426), (MGI:3814781|PMID:18606138)
(MGI:3714704|PMID:17433286)
(MGI:4819429|PMID:20643356)
(MGI:4837757|PMID:20940229)
MGI PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... MGI:3589836 MGI:3714704 MGI:3814781 MGI:3821448 MGI:4819429 MGI:4837757 NCBI chr 4:90,051,994...90,080,701
Ensembl chr 4:90,053,380...90,080,656
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3714704|PMID:17433286) Ensembl
Ensembl
MGI
PMID:17433286 GO_REF:0000107 MGI:3714704 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5294688|PMID:21980308) Ensembl
Ensembl
MGI
PMID:21980308 GO_REF:0000107 MGI:5294688 NCBI chr10:42,013,114...42,216,139
Ensembl chr10:42,013,045...42,214,205
JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:73,843,770...73,901,020 JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DVL1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624185|PMID:16571627) Ensembl
Ensembl
MGI
PMID:16571627 GO_REF:0000107 MGI:3624185 NCBI chr 6:63,617,787...63,628,965
Ensembl chr 6:63,617,789...63,629,229
JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624185|PMID:16571627) Ensembl
MGI
Ensembl
PMID:16571627 GO_REF:0000107 MGI:3624185 NCBI chr12:52,581,687...52,590,266
Ensembl chr12:52,579,765...52,590,292
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3624185|PMID:16571627), (MGI:3703464|PMID:17229766) MGI PMID:16571627 PMID:17229766 MGI:3624185 MGI:3703464 NCBI chr 4:90,051,994...90,080,701
Ensembl chr 4:90,053,380...90,080,656
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3793375|PMID:18257070) MGI
Ensembl
Ensembl
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CALM2 calmodulin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:93,371,765...93,386,378
Ensembl chr 3:93,372,045...93,438,068
JBrowse link
G METTL23 methyltransferase like 23 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6103984|PMID:28930672) UniProt
Ensembl
PMID:28930672 GO_REF:0000107 MGI:6103984 NCBI chr12:4,802,404...4,808,948
Ensembl chr12:4,804,027...4,808,911
JBrowse link
G STPG4 sperm-tail PG-rich repeat containing 4 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:6103984|PMID:28930672)
GO_Central
UniProt
GO_Central
Ensembl
Ensembl
PMID:21873635 PMID:28930672 GO_REF:0000107 MGI:6103984 NCBI chr 3:93,386,523...93,438,070
Ensembl chr 3:93,372,045...93,438,068
JBrowse link
G TET3 tet methylcytosine dioxygenase 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:68,918,896...69,020,406
Ensembl chr 3:68,918,933...69,020,986
JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect
IEA
ISO
(MGI:6151717|PMID:27841881)
(MGI:6270117|PMID:29117290)
(MGI:49689|PMID:1606615)
Ensembl
MGI
Ensembl
PMID:1606615 PMID:27841881 PMID:29117290 GO_REF:0000107 MGI:49689 MGI:6151717 MGI:6270117 NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,564...69,029,919
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6151717|PMID:27841881)
(MGI:5014027|PMID:20385583)
(MGI:1347183|PMID:10555141)
Ensembl
MGI
Ensembl
PMID:10555141 PMID:20385583 PMID:27841881 GO_REF:0000107 MGI:1347183 MGI:5014027 MGI:6151717 NCBI chr 3:113,501,972...113,609,148
Ensembl chr 3:113,528,926...113,609,139
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (PMID:18814855)
(MGI:6151717|PMID:27841881)
(MGI:1347183|PMID:10555141)
UniProt
MGI
PMID:10555141 PMID:18814855 PMID:27841881 MGI:1347183 MGI:6151717 NCBI chr17:36,345,715...36,386,076
Ensembl chr17:36,332,801...36,386,074
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5319411|PMID:22495301) Ensembl
Ensembl
MGI
PMID:22495301 GO_REF:0000107 MGI:5319411 NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532
JBrowse link
G ZDBF2 zinc finger DBF-type containing 2 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:6151717|PMID:27841881)
(PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:27841881 MGI:6151717 NCBI chr15:109,563,445...109,593,858
Ensembl chr15:109,563,440...109,589,700
JBrowse link
G ZFP57 ZFP57 zinc finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:18622393)
(MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
UniProt
MGI
PMID:18622393 PMID:18854139 PMID:33500348 MGI:3826319 MGI:6506156 NCBI chr 7:22,607,420...22,612,064
Ensembl chr 7:22,605,125...22,612,064
JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3046395|PMID:15218525) Ensembl
Ensembl
MGI
PMID:15218525 GO_REF:0000107 MGI:3046395 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
G FKBP8 FKBP prolyl isomerase 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3806189|PMID:18590716)
(MGI:3774974|PMID:18003640)
Ensembl
Ensembl
MGI
PMID:18003640 PMID:18590716 GO_REF:0000107 MGI:3774974 MGI:3806189 NCBI chr 2:59,256,546...59,267,171
Ensembl chr 2:59,252,073...59,267,165
JBrowse link
G FOXA1 forkhead box A1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5486225|PMID:23383217) MGI
Ensembl
PMID:23383217 GO_REF:0000107 MGI:5486225 NCBI chr 7:62,471,233...62,479,638
Ensembl chr 7:62,471,228...62,479,223
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716)
(MGI:5486225|PMID:23383217)
(MGI:894511|PMID:9226455)
MGI PMID:9226455 PMID:18590716 PMID:23383217 MGI:3806189 MGI:5486225 MGI:894511 NCBI chr17:29,997,397...30,001,704
Ensembl chr17:29,997,400...30,001,707
JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940) MGI PMID:17504940 PMID:17504941 MGI:3710451 MGI:3710452 NCBI chr10:28,509,168...28,511,554 JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:894564|PMID:9247260)
(MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674)
MGI
Ensembl
PMID:9247260 PMID:18590716 PMID:19286674 GO_REF:0000107 MGI:3806189 MGI:3841503 MGI:894564 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GSC goosecoid homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:894511|PMID:9226455) Ensembl
Ensembl
MGI
PMID:9226455 GO_REF:0000107 MGI:894511 NCBI chr 7:116,099,053...116,101,153
Ensembl chr 7:116,099,047...116,100,966
JBrowse link
G KIF3A kinesin family member 3A involved_in
acts_upstream_of_or_within
ISO (MGI:4888042|PMID:21209331)
(MGI:3806189|PMID:18590716)
(MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674)
BHF-UCL
MGI
PMID:18590716 PMID:19286674 PMID:21209331 MGI:3806189 MGI:3841503 MGI:4888042 NCBI chr 2:134,932,339...135,069,408
Ensembl chr 2:134,932,615...135,069,351
JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr18:1,724,930...1,730,724
Ensembl chr18:1,725,244...1,730,170
JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr 6:77,160,827...77,268,626
Ensembl chr 6:77,161,097...77,267,415
JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1347695|PMID:10557208) Ensembl
Ensembl
MGI
PMID:10557208 GO_REF:0000107 MGI:1347695 NCBI chr 7:96,478,179...96,567,884
Ensembl chr 7:96,478,181...96,569,132
JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208) MGI PMID:10557208 MGI:1347695 NCBI chr10:14,532,556...14,561,862
Ensembl chr10:14,532,550...14,561,858
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1095757|PMID:9262482) MGI
Ensembl
PMID:9262482 GO_REF:0000107 MGI:1095757 NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,325...26,703,225
JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in ISO (MGI:69552|PMID:7720556) UniProt PMID:7720556 MGI:69552 NCBI chr 7:28,632,065...28,658,958
Ensembl chr 7:28,632,082...28,658,953
JBrowse link
G RNF220 ring finger protein 220 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6220747|PMID:30177510) Ensembl
Ensembl
MGI
PMID:30177510 GO_REF:0000107 MGI:6220747 NCBI chr 6:166,666,140...166,910,728
Ensembl chr 6:166,666,138...166,910,873
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3710451|PMID:17504941)
(MGI:3710017|PMID:17442700), (MGI:3806189|PMID:18590716)
Ensembl
Ensembl
MGI
PMID:17442700 PMID:17504941 PMID:18590716 GO_REF:0000107 MGI:3710017 MGI:3710451 MGI:3806189 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3806189|PMID:18590716) Ensembl
Ensembl
MGI
PMID:18590716 GO_REF:0000107 MGI:3806189 NCBI chr18:19,450,730...19,478,796
Ensembl chr18:19,450,734...19,479,374
JBrowse link
G TCTN1 tectonic family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3610767|PMID:16357211) Ensembl
Ensembl
MGI
PMID:16357211 GO_REF:0000107 MGI:3610767 NCBI chr14:31,953,996...32,010,202
Ensembl chr14:31,954,000...32,010,199
JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3841503|PMID:19286674) MGI
Ensembl
PMID:19286674 GO_REF:0000107 MGI:3841503 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,446...67,238,324
JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:64780|PMID:8299937) Ensembl
Ensembl
MGI
PMID:8299937 GO_REF:0000107 MGI:64780 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,154,086...51,202,176
JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1861752|PMID:10932191) MGI
Ensembl
PMID:10932191 GO_REF:0000107 MGI:1861752 NCBI chr 4:72,572,455...72,754,443
Ensembl chr 4:72,571,874...72,754,432
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,511...64,328,105
JBrowse link
G GJB6 gap junction protein beta 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2447513|PMID:12490528) Ensembl
Ensembl
MGI
PMID:12490528 GO_REF:0000107 MGI:2447513 NCBI chr11:793,276...800,109
Ensembl chr11:793,276...800,046
JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,501...22,363,847
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:3050165|PMID:15190012) MGI PMID:15190012 MGI:3050165 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,143...51,296,725
JBrowse link
G WDR19 WD repeat domain 19 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5314316|PMID:22228095) Ensembl
Ensembl
MGI
PMID:22228095 GO_REF:0000107 MGI:5314316 NCBI chr 8:30,453,969...30,553,699
Ensembl chr 8:30,463,862...30,553,703
JBrowse link
ectoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr17:29,997,397...30,001,704
Ensembl chr17:29,997,400...30,001,707
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1344734|PMID:10498685) Ensembl
Ensembl
MGI
PMID:10498685 GO_REF:0000107 MGI:1344734 NCBI chr12:38,450,708...38,457,583
Ensembl chr12:38,450,708...38,456,139
JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELF5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO (MGI:5616945|PMID:25446535) MGI PMID:25446535 MGI:5616945 NCBI chr 2:26,443,979...26,486,802
Ensembl chr 2:26,443,963...26,485,903
JBrowse link
G ETS2 ETS proto-oncogene 2, transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5616945|PMID:25446535) Ensembl
Ensembl
MGI
PMID:25446535 GO_REF:0000107 MGI:5616945 NCBI chr13:202,464,341...202,483,534
Ensembl chr13:202,468,721...202,484,610
JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1355046|PMID:10742100) MGI
Ensembl
PMID:10742100 GO_REF:0000107 MGI:1355046 NCBI chr 7:23,564,654...23,570,691 JBrowse link
embryo development ending in birth or egg hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACE angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 ISO RGD PMID:1784836 RGD:12879818 NCBI chr12:15,394,487...15,414,609
Ensembl chr12:15,394,487...15,414,639
JBrowse link
G AKIRIN2 akirin 2 involved_in ISO (MGI:3771766|PMID:18066067) UniProt PMID:18066067 MGI:3771766 NCBI chr 1:56,047,188...56,075,342
Ensembl chr 1:56,043,345...56,070,164
JBrowse link
G CAMSAP3 calmodulin regulated spectrin associated protein family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:71,531,607...71,547,413
Ensembl chr 2:71,531,607...71,547,419
JBrowse link
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 involved_in ISO PMID:11276227 UniProt PMID:11276227 RGD:8554712 NCBI chr12:42,456,063...42,494,494
Ensembl chr12:42,493,321...42,494,659
JBrowse link
G EVX1 even-skipped homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:68131|PMID:7958869) Ensembl
Ensembl
MGI
PMID:7958869 GO_REF:0000107 MGI:68131 NCBI chr18:45,327,711...45,331,204
Ensembl chr18:45,327,711...45,331,169
JBrowse link
G FGF2 fibroblast growth factor 2 ISO RGD PMID:19476451 RGD:2315829 NCBI chr 8:101,278,877...101,344,084
Ensembl chr 8:101,278,878...101,343,916
JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2684487|PMID:14623825) MGI
Ensembl
PMID:14623825 GO_REF:0000107 MGI:2684487 NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,210...112,814,134
JBrowse link
G FXN frataxin acts_upstream_of_or_within ISO (MGI:1858550|PMID:10767347) MGI PMID:10767347 MGI:1858550 NCBI chr 1:222,412,485...222,433,224
Ensembl chr 1:222,412,500...222,461,943
JBrowse link
G HUS1 HUS1 checkpoint clamp component involved_in ISO (MGI:3582004|PMID:15919177) UniProt PMID:15919177 MGI:3582004 NCBI chr18:48,522,914...48,539,267
Ensembl chr18:48,522,997...48,538,788
JBrowse link
G OSR2 odd-skipped related transciption factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:11520675) UniProt
Ensembl
PMID:11520675 GO_REF:0000107 NCBI chr 4:37,890,200...37,897,935
Ensembl chr 4:37,852,587...37,897,935
JBrowse link
G RICTOR RPTOR independent companion of MTOR complex 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr16:24,109,934...24,250,019
Ensembl chr16:24,109,934...24,311,231
JBrowse link
G SCEL sciellin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:49,651,589...49,777,777
Ensembl chr11:49,651,673...49,775,448
JBrowse link
G SEBOX SEBOX homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3836092|PMID:18753614) Ensembl
Ensembl
MGI
PMID:18753614 GO_REF:0000107 MGI:3836092 NCBI chr12:44,646,731...44,648,981
Ensembl chr12:44,646,289...44,648,226
JBrowse link
G STOX2 storkhead box 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:45,083,803...45,301,161
Ensembl chr15:45,083,606...45,301,158
JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624572|PMID:16702401) MGI
Ensembl
PMID:16702401 GO_REF:0000107 MGI:3624572 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
G TP53BP2 tumor protein p53 binding protein 2 acts_upstream_of_or_within ISO (MGI:3624572|PMID:16702401) MGI PMID:16702401 MGI:3624572 NCBI chr10:19,823,932...19,889,883
Ensembl chr10:19,823,933...19,889,869
JBrowse link
G UBR3 ubiquitin protein ligase E3 component n-recognin 3 involved_in ISO (MGI:3718176|PMID:17462990) UniProt PMID:17462990 MGI:3718176 NCBI chr15:76,135,456...76,360,819
Ensembl chr15:76,135,494...76,360,823
JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (MGI:1928546|PMID:11118896) MGI PMID:11118896 MGI:1928546 NCBI chr13:122,266,632...122,277,513
Ensembl chr13:122,266,615...122,277,509
JBrowse link
G CHRDL1 chordin like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:90,703,422...90,827,216
Ensembl chr  X:90,703,422...90,827,210
JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:58,179,084...58,184,778
Ensembl chr  X:58,179,087...58,184,499
JBrowse link
G COBL cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr 9:136,850,521...137,055,249 JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:894149|PMID:9230313) Ensembl
Ensembl
MGI
PMID:9230313 GO_REF:0000107 MGI:894149 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G FRAT1 FRAT regulator of WNT signaling pathway 1 acts_upstream_of_or_within ISO (MGI:1349209|PMID:10534617) MGI PMID:10534617 MGI:1349209 NCBI chr14:108,739,239...108,741,953
Ensembl chr14:108,739,541...108,740,380
JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:110,913,990...110,921,388
Ensembl chr15:110,911,567...110,921,353
JBrowse link
G STIL STIL centriolar assembly protein acts_upstream_of_or_within ISO (MGI:1339521|PMID:10385121) MGI PMID:10385121 MGI:1339521 NCBI chr 6:164,197,511...164,266,615
Ensembl chr 6:164,197,558...164,266,919
JBrowse link
G WNT1 Wnt family member 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:15,010,607...15,015,007
Ensembl chr 5:15,010,985...15,014,079
JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,455
JBrowse link
embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDON cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624618|PMID:16647304)
(MGI:3624617|PMID:16647303)
Ensembl
Ensembl
MGI
PMID:16647303 PMID:16647304 GO_REF:0000107 MGI:3624617 MGI:3624618 NCBI chr 9:53,079,543...53,178,881
Ensembl chr 9:53,079,550...53,178,881
JBrowse link
G FUZ fuzzy planar cell polarity protein involved_in ISO (MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618) UniProt PMID:19767740 PMID:21935430 PMID:23806618 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chr 6:54,823,680...54,830,425
Ensembl chr 6:54,823,666...54,829,508
JBrowse link
G GATAD2A GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chr 2:58,415,749...58,517,308
Ensembl chr 2:58,415,749...58,517,191
JBrowse link
G GREM2 gremlin 2, DAN family BMP antagonist involved_in ISO (MGI:5543884|PMID:23850456) UniProt PMID:23850456 MGI:5543884 NCBI chr10:11,884,198...11,904,249
Ensembl chr10:11,885,280...11,885,780
JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,705...68,902,062
JBrowse link
G MAB21L2 mab-21 like 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3510098|PMID:15385160) Ensembl
Ensembl
MGI
PMID:15385160 GO_REF:0000107 MGI:3510098 NCBI chr 8:78,385,176...78,388,008
Ensembl chr 8:78,381,994...78,387,069
JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr15:88,425,861...88,528,417
Ensembl chr15:88,425,141...88,528,231
JBrowse link
G OFD1 OFD1 centriole and centriolar satellite protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr  X:10,361,403...10,415,502 JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:3037149|PMID:15013802) MGI PMID:15013802 MGI:3037149 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,477
JBrowse link
G ZNF281 zinc finger protein 281 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:23,033,629...23,039,121
Ensembl chr10:23,036,146...23,039,647
JBrowse link
embryonic brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO RGD PMID:19819228 RGD:11537397 NCBI chr 1:28,566,279...28,760,471
Ensembl chr 1:28,566,266...28,760,468
JBrowse link
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:111,391,083...111,397,609
Ensembl chr14:111,388,898...111,397,622
JBrowse link
G CC2D2A coiled-coil and C2 domain containing 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5696765|PMID:24947469) Ensembl
MGI
PMID:24947469 GO_REF:0000107 MGI:5696765 NCBI chr 8:10,779,206...10,898,189
Ensembl chr 8:10,779,332...10,898,193
JBrowse link
G CDC40 cell division cycle 40 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:76,179,169...76,234,690
Ensembl chr 1:76,179,164...76,232,959
JBrowse link
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr14:15,582...24,102 JBrowse link
G CNTNAP2 contactin associated protein 2 involved_in ISO (MGI:6467171|PMID:32879327) MGI PMID:32879327 MGI:6467171 NCBI chr 9:109,740,510...111,781,144 JBrowse link
G CTNNB1 catenin beta 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G EN1 engrailed homeobox 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:24,402,605...24,408,377
Ensembl chr15:24,402,605...24,407,798
JBrowse link
G EN2 engrailed homeobox 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr18:2,781,977...2,788,441
Ensembl chr18:2,781,977...2,788,824
JBrowse link
G IFT140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5505384|PMID:23469164) Ensembl
Ensembl
MGI
PMID:23469164 GO_REF:0000107 MGI:5505384 NCBI chr 3:40,309,298...40,372,139
Ensembl chr 3:40,309,651...40,372,136
JBrowse link
G LOC100624785 tubulin beta-2A chain involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5050793|PMID:21515572) Ensembl
MGI
Ensembl
PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr 7:1,910,585...1,914,668
Ensembl chr 7:1,910,585...1,956,119
JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4839544|PMID:20589884) Ensembl
Ensembl
MGI
PMID:20589884 GO_REF:0000107 MGI:4839544 NCBI chr  X:57,150,884...57,174,367
Ensembl chr  X:57,150,578...57,175,352
JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A NOT|involved_in ISO (MGI:6196220|PMID:30074985) ARUK-UCL PMID:30074985 MGI:6196220 NCBI chr 6:95,738,961...95,753,245
Ensembl chr 6:95,738,973...95,814,953
JBrowse link
G MIR34C-1 microRNA mir-34c-1 acts_upstream_of_or_within ISO (MGI:5578416|PMID:24982181) MGI PMID:24982181 MGI:5578416 NCBI chr 9:39,280,278...39,280,357
Ensembl chr 9:39,280,278...39,280,357
JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5487695|PMID:23454480) Ensembl
Ensembl
MGI
PMID:23454480 GO_REF:0000107 MGI:5487695 NCBI chr12:34,499,139...34,512,191
Ensembl chr12:34,499,141...34,512,187
JBrowse link
G PCNT pericentrin acts_upstream_of_or_within ISO (MGI:5696764|PMID:25220058) MGI PMID:25220058 MGI:5696764
G PHF10 PHD finger protein 10 ISO RGD PMID:24056535 RGD:9588230 NCBI chr 1:555,649...576,781
Ensembl chr 1:555,355...576,713
JBrowse link
G PPIL1 peptidylprolyl isomerase like 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:32,522,736...32,547,874
Ensembl chr 7:32,522,732...32,547,839
JBrowse link
G RNF112 ring finger protein 112 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:60,117,452...60,124,071
Ensembl chr12:60,117,460...60,126,173
JBrowse link
G RPL10 ribosomal protein L10 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr  X:124,927,249...124,929,791
Ensembl chr  X:124,926,482...124,929,797
JBrowse link
G SLC6A8 solute carrier family 6 member 8 ISO RGD PMID:15918910 RGD:1599815 NCBI chr  X:124,435,282...124,452,182
Ensembl chr  X:124,294,856...124,453,249
JBrowse link
G TBC1D23 TBC1 domain family member 23 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr13:158,665,083...158,729,285
Ensembl chr13:158,665,072...158,729,276
JBrowse link
G TRA2B transformer 2 beta homolog involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5304203|PMID:22194695) Ensembl
MGI
Ensembl
PMID:22194695 GO_REF:0000107 MGI:5304203 NCBI chr13:123,760,008...123,780,919
Ensembl chr13:123,754,859...123,780,920
JBrowse link
G TTBK2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (MGI:5049817|PMID:21548880) MGI PMID:21548880 MGI:5049817 NCBI chr 1:128,489,676...128,640,094
Ensembl chr 1:128,489,687...128,635,527
JBrowse link
G TUBB2B tubulin, beta 2B class IIb involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:1,952,705...1,955,780
Ensembl chr 7:1,910,585...1,956,119
JBrowse link
G WNT1 Wnt family member 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:15,010,607...15,015,007
Ensembl chr 5:15,010,985...15,014,079
JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3700411|PMID:17184764) Ensembl
Ensembl
MGI
PMID:17184764 GO_REF:0000107 MGI:3700411 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,715,620...114,037,249
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3700411|PMID:17184764) MGI
Ensembl
PMID:17184764 GO_REF:0000107 MGI:3700411 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,513
JBrowse link
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr14:15,582...24,102 JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3588480|PMID:15958512) Ensembl
Ensembl
MGI
PMID:15958512 GO_REF:0000107 MGI:3588480 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,469...28,777,541
JBrowse link
G FZD5 frizzled class receptor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3821812|PMID:18791178) Ensembl
MGI
PMID:18791178 GO_REF:0000107 MGI:3821812 NCBI chr15:110,913,990...110,921,388
Ensembl chr15:110,911,567...110,921,353
JBrowse link
G IFT140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5505384|PMID:23469164) Ensembl
Ensembl
MGI
PMID:23469164 GO_REF:0000107 MGI:5505384 NCBI chr 3:40,309,298...40,372,139
Ensembl chr 3:40,309,651...40,372,136
JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:1347482|PMID:10572050)
(MGI:1344731|PMID:10498698)
MGI PMID:10498698 PMID:10572050 MGI:1344731 MGI:1347482 NCBI chr 8:111,697,364...111,723,295
Ensembl chr 8:111,698,664...111,723,298
JBrowse link
G PPP1R13L protein phosphatase 1 regulatory subunit 13 like involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3530389|PMID:15661756) Ensembl
Ensembl
MGI
PMID:15661756 GO_REF:0000107 MGI:3530389 NCBI chr 6:51,763,214...51,779,902
Ensembl chr 6:51,763,219...51,781,058
JBrowse link
G RARA retinoic acid receptor alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:69060|PMID:7607067) Ensembl
Ensembl
MGI
PMID:7607067 GO_REF:0000107 MGI:69060 NCBI chr12:22,047,449...22,085,759
Ensembl chr12:22,047,442...22,085,674
JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:69060|PMID:7607067) Ensembl
Ensembl
MGI
PMID:7607067 GO_REF:0000107 MGI:69060 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,267...18,458,625
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709664|PMID:17473173) Ensembl
Ensembl
MGI
PMID:17473173 GO_REF:0000107 MGI:3709664 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,571,093...62,601,508
JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chr15:137,863,612...137,912,325
Ensembl chr15:137,863,609...137,912,477
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3841503|PMID:19286674) Ensembl
Ensembl
MGI
PMID:19286674 GO_REF:0000107 MGI:3841503 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,446...67,238,324
JBrowse link
G WDR19 WD repeat domain 19 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5314316|PMID:22228095) Ensembl
Ensembl
MGI
PMID:22228095 GO_REF:0000107 MGI:5314316 NCBI chr 8:30,453,969...30,553,699
Ensembl chr 8:30,463,862...30,553,703
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:59,317,930...59,347,274
Ensembl chr 7:59,318,010...59,347,267
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:88,286,911...88,290,131 JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1332362|PMID:10049573) Ensembl
Ensembl
MGI
PMID:10049573 GO_REF:0000107 MGI:1332362 NCBI chr17:57,567,770...57,676,516
Ensembl chr17:57,584,091...57,676,944
JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807101|PMID:18653562) Ensembl
Ensembl
MGI
PMID:18653562 GO_REF:0000107 MGI:3807101 NCBI chr 1:25,155,652...25,158,517
Ensembl chr 1:25,155,664...25,160,279
JBrowse link
G CRYAA crystallin alpha A acts_upstream_of_or_within ISO (MGI:3775669|PMID:18056999) MGI PMID:18056999 MGI:3775669 NCBI chr13:206,293,877...206,297,050 JBrowse link
G FOXF2 forkhead box F2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:715,001...719,781
Ensembl chr 7:714,850...719,267
JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:110,913,990...110,921,388
Ensembl chr15:110,911,567...110,921,353
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:106,570,950...106,627,114
Ensembl chr 4:106,572,724...106,627,152
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr18:9,940,535...10,141,815
Ensembl chr18:9,747,737...10,135,083
JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,705...68,902,062
JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6094959|PMID:28778798) Ensembl
Ensembl
MGI
PMID:28778798 GO_REF:0000107 MGI:6094959 NCBI chr 3:111,683,674...111,718,504
Ensembl chr 3:111,683,669...111,718,971
JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807419|PMID:18582859) Ensembl
Ensembl
MGI
PMID:18582859 GO_REF:0000107 MGI:3807419 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121
JBrowse link
G KDM2B lysine demethylase 2B involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:31,057,121...31,203,093
Ensembl chr14:31,057,121...31,203,092
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413396|PMID:19653321)
(MGI:3823171|PMID:18985738)
MGI PMID:18985738 PMID:19653321 MGI:3823171 MGI:4413396 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807101|PMID:18653562) Ensembl
Ensembl
MGI
PMID:18653562 GO_REF:0000107 MGI:3807101 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,971,567...29,001,200
JBrowse link
G SP1 Sp1 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr 5:18,588,763...18,633,177
Ensembl chr 5:18,588,758...18,630,089
JBrowse link
G SP3 Sp3 transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3717030|PMID:17584888) Ensembl
Ensembl
MGI
PMID:17584888 GO_REF:0000107 MGI:3717030 NCBI chr15:79,935,986...79,990,139
Ensembl chr15:79,935,994...80,025,850
JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:36,878,662...36,887,513
Ensembl chr12:36,878,675...36,887,513
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,477
JBrowse link
G TH tyrosine hydroxylase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:1,499,628...1,506,180
Ensembl chr 2:1,499,618...1,506,615
JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3790562|PMID:18436818) Ensembl
Ensembl
MGI
PMID:18436818 GO_REF:0000107 MGI:3790562 NCBI chr10:42,013,114...42,216,139
Ensembl chr10:42,013,045...42,214,205
JBrowse link
embryonic cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AATF apoptosis antagonizing transcription factor involved_in
acts_upstream_of
IEA
ISO
(MGI:1927250|PMID:11071758) Ensembl
Ensembl
MGI
PMID:11071758 GO_REF:0000107 MGI:1927250 NCBI chr12:38,461,809...38,563,537
Ensembl chr12:38,461,797...38,585,132
JBrowse link
G CUL3 cullin 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:126,191,605...126,287,148
Ensembl chr15:126,189,851...126,287,037
JBrowse link
G DPPA3 developmental pluripotency associated 3 acts_upstream_of_or_within ISO (MGI:3056827|PMID:15018652) MGI PMID:15018652 MGI:3056827 NCBI chr 5:62,861,492...62,868,131 JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1101629|PMID:9426063) Ensembl
Ensembl
MGI
PMID:9426063 GO_REF:0000107 MGI:1101629 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,319...51,779,624
JBrowse link
G GDF9 growth differentiation factor 9 involved_in IMP (PMID:24313324) AgBase
AgBase
PMID:24313324 NCBI chr 2:135,181,494...135,184,451
Ensembl chr 2:135,180,104...135,186,389
JBrowse link
G KIF20A kinesin family member 20A involved_in IMP (PMID:25036038) AgBase
AgBase
PMID:25036038 NCBI chr 2:140,202,316...140,213,144
Ensembl chr 2:140,202,015...140,211,157
JBrowse link
G PADI6 peptidyl arginine deiminase 6 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:75,969,855...75,987,097
Ensembl chr 6:75,969,925...75,987,095
JBrowse link
G PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta acts_upstream_of_or_within ISO (MGI:2177130|PMID:11919689) MGI PMID:11919689 MGI:2177130 NCBI chr13:79,427,033...79,610,840
Ensembl chr13:79,425,812...79,610,840
JBrowse link
G RHOA ras homolog family member A involved_in IMP (PMID:25485583) AgBase
AgBase
PMID:25485583 NCBI chr13:31,918,484...31,991,207
Ensembl chr13:31,918,836...32,003,722
JBrowse link
G TOP1 DNA topoisomerase I involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:83974|PMID:8943335) Ensembl
MGI
PMID:8943335 GO_REF:0000107 MGI:83974 NCBI chr17:43,710,270...43,799,700
Ensembl chr17:43,710,290...43,799,700
JBrowse link
G TOP2A DNA topoisomerase II alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2158879|PMID:11835580) Ensembl
Ensembl
MGI
PMID:11835580 GO_REF:0000107 MGI:2158879 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,336...22,028,454
JBrowse link
G TPRA1 transmembrane protein adipocyte associated 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5525240|PMID:18459117) Ensembl
MGI
PMID:18459117 GO_REF:0000107 MGI:5525240 NCBI chr13:72,661,580...72,666,995
Ensembl chr13:72,650,669...72,666,989
JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX3 ALX homeobox 3 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 4:110,047,254...110,058,205
Ensembl chr 4:110,047,306...110,058,237
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1095762|PMID:9268572) Ensembl
Ensembl
MGI
PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
G DLX2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:76977|PMID:7590232) Ensembl
Ensembl
MGI
PMID:7590232 GO_REF:0000107 MGI:76977 NCBI chr15:78,200,696...78,204,264
Ensembl chr15:78,201,892...78,204,157
JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 involved_in IEA
ISS
Ensembl
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr12:2,285,679...2,311,750
Ensembl chr12:2,285,225...2,311,750
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,710...131,579,703
JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:86990|PMID:9106663) MGI
Ensembl
PMID:9106663 GO_REF:0000107 MGI:86990 NCBI chr 6:2,552,141...2,555,041
Ensembl chr 6:2,552,862...2,554,367
JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3713422|PMID:17525797) MGI PMID:17525797 MGI:3713422 NCBI chr10:28,509,168...28,511,554 JBrowse link
G GNAS GNAS complex locus involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3619837|PMID:15797856) Ensembl
Ensembl
MGI
PMID:15797856 GO_REF:0000107 MGI:3619837 NCBI chr17:58,985,580...59,053,022
Ensembl chr17:58,998,981...59,053,021
JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4943100|PMID:21377456) Ensembl
Ensembl
MGI
PMID:21377456 GO_REF:0000107 MGI:4943100 NCBI chr 4:35,368,788...35,565,394
Ensembl chr 4:35,371,136...35,564,919
JBrowse link
G IFT140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5505384|PMID:23469164) Ensembl
Ensembl
MGI
PMID:23469164 GO_REF:0000107 MGI:5505384 NCBI chr 3:40,309,298...40,372,139
Ensembl chr 3:40,309,651...40,372,136
JBrowse link
G IRX5 iroquois homeobox 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:30,511,263...30,515,015
Ensembl chr 6:30,511,894...30,515,097
JBrowse link
G MMP14 matrix metallopeptidase 14 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3771253|PMID:18022611) MGI
Ensembl
PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr 7:76,174,502...76,185,931
Ensembl chr 7:76,174,500...76,185,923
JBrowse link
G MMP16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3771253|PMID:18022611) Ensembl
Ensembl
MGI
PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr 4:48,556,826...48,867,959
Ensembl chr 4:48,556,967...48,862,986
JBrowse link
G NIPBL NIPBL cohesin loading factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4367301|PMID:19763162) MGI
Ensembl
PMID:19763162 GO_REF:0000107 MGI:4367301 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,501...22,363,847
JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2155575|PMID:11311163) Ensembl
Ensembl
MGI
PMID:11311163 GO_REF:0000107 MGI:2155575 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,349,965...73,360,618
JBrowse link
G PAX5 paired box 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5476374|PMID:23349049) Ensembl
Ensembl
MGI
PMID:23349049 GO_REF:0000107 MGI:5476374 NCBI chr 1:237,574,938...237,785,454
Ensembl chr 1:237,575,045...237,785,413
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 8:40,966,568...41,021,440
Ensembl chr 8:40,967,493...41,021,442
JBrowse link
G PRRX1 paired related homeobox 1 acts_upstream_of_or_within ISO (MGI:73363|PMID:7758948)
(MGI:1306737|PMID:9729491)
MGI PMID:7758948 PMID:9729491 MGI:1306737 MGI:73363 NCBI chr 4:80,427,682...80,502,689
Ensembl chr 4:80,427,685...80,501,646
JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (MGI:1306737|PMID:9729491) MGI PMID:9729491 MGI:1306737 NCBI chr 1:269,853,134...269,902,808
Ensembl chr 1:269,853,399...269,902,637
JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3042355|PMID:15030764) Ensembl
Ensembl
MGI
PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chr 7:40,106,581...40,353,304
Ensembl chr 7:40,106,513...40,459,686
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4431136|PMID:20133625) Ensembl
Ensembl
MGI
PMID:20133625 GO_REF:0000107 MGI:4431136 NCBI chr13:29,884,708...29,996,285
Ensembl chr13:29,884,712...29,996,360
JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:4822095|PMID:20515681) UniProt
UniProt
Ensembl
MGI
PMID:20515681 GO_REF:0000024 GO_REF:0000107 MGI:4822095 NCBI chr 1:189,620,430...189,624,652
Ensembl chr 1:189,619,853...189,628,187
JBrowse link
G SIX2 SIX homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4822095|PMID:20515681) Ensembl
Ensembl
MGI
PMID:20515681 GO_REF:0000107 MGI:4822095 NCBI chr 3:95,460,046...95,463,428
Ensembl chr 3:95,459,937...95,464,066
JBrowse link
G SIX4 SIX homeobox 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4822095|PMID:20515681) Ensembl
Ensembl
MGI
PMID:20515681 GO_REF:0000107 MGI:4822095 NCBI chr 1:189,670,390...189,682,378
Ensembl chr 1:189,670,390...189,682,783
JBrowse link
G SLC39A1 solute carrier family 39 member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624433|PMID:16652366) Ensembl
Ensembl
MGI
PMID:16652366 GO_REF:0000107 MGI:3624433 NCBI chr 4:95,729,480...95,733,824
Ensembl chr 4:95,728,999...95,733,824
JBrowse link
G SLC39A3 solute carrier family 39 member 3 acts_upstream_of_or_within ISO (MGI:3624433|PMID:16652366) MGI PMID:16652366 MGI:3624433 NCBI chr 2:75,908,451...75,916,877 JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618021|PMID:15183723) Ensembl
Ensembl
MGI
PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr 1:97,415,360...97,511,388
Ensembl chr 1:97,415,716...97,511,358
JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618021|PMID:15183723) Ensembl
Ensembl
MGI
PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr 1:164,998,457...165,124,455
Ensembl chr 1:164,998,083...165,124,454
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:3050165|PMID:15190012) MGI PMID:15190012 MGI:3050165 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,143...51,296,725
JBrowse link
G TBX15 T-box transcription factor 15 acts_upstream_of_or_within ISO (MGI:3604843|PMID:15728667) MGI PMID:15728667 MGI:3604843 NCBI chr 4:101,918,891...102,032,280 JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:80520|PMID:8622765) MGI
UniProt
PMID:8622765 GO_REF:0000024 MGI:80520 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,477
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3701721|PMID:16806156) Ensembl
Ensembl
MGI
PMID:16806156 GO_REF:0000107 MGI:3701721 NCBI chr 1:240,842,735...240,918,267
Ensembl chr 1:240,859,270...240,918,528
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:16,784,370...16,875,828
Ensembl chr13:16,784,491...16,878,165
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3042355|PMID:15030764) MGI
Ensembl
PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chr 9:88,286,911...88,290,131 JBrowse link
G TWIST2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:3042355|PMID:15030764) MGI PMID:15030764 MGI:3042355 NCBI chr15:138,228,640...138,276,341 JBrowse link
G WDR19 WD repeat domain 19 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5314316|PMID:22228095) Ensembl
Ensembl
MGI
PMID:22228095 GO_REF:0000107 MGI:5314316 NCBI chr 8:30,453,969...30,553,699
Ensembl chr 8:30,463,862...30,553,703
JBrowse link
G WNT9B Wnt family member 9B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3696935|PMID:16998816)
(MGI:3588895|PMID:16054034)
Ensembl
MGI
Ensembl
PMID:16054034 PMID:16998816 GO_REF:0000107 MGI:3588895 MGI:3696935 NCBI chr12:17,709,046...17,733,434
Ensembl chr12:17,709,049...17,733,438
JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:74163|PMID:7670465) Ensembl
MGI
PMID:7670465 GO_REF:0000107 MGI:74163 NCBI chr17:47,044,492...47,072,232
Ensembl chr17:47,044,495...47,072,245
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3663954|PMID:16806149) Ensembl
Ensembl
MGI
PMID:16806149 GO_REF:0000107 MGI:3663954 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,715,620...114,037,249
JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:69,932,646...69,935,861
Ensembl chr 8:69,932,643...69,935,861
JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611702|PMID:16308329) MGI
Ensembl
PMID:16308329 GO_REF:0000107 MGI:3611702 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,469...28,777,541
JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611702|PMID:16308329) MGI
Ensembl
Ensembl
PMID:16308329 GO_REF:0000107 MGI:3611702 NCBI chr11:1,554,648...1,581,938
Ensembl chr11:1,554,763...1,582,408
JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3617131|PMID:16439479) MGI
Ensembl
PMID:16439479 GO_REF:0000107 MGI:3617131 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659
JBrowse link
G FOXF2 forkhead box F2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3617131|PMID:16439479) Ensembl
Ensembl
MGI
PMID:16439479 GO_REF:0000107 MGI:3617131 NCBI chr 7:715,001...719,781
Ensembl chr 7:714,850...719,267
JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1353327|PMID:10693670) Ensembl
Ensembl
MGI
PMID:10693670 GO_REF:0000107 MGI:1353327 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1353327|PMID:10693670) MGI
Ensembl
PMID:10693670 GO_REF:0000107 MGI:1353327 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,071...52,697,903
JBrowse link
G MYB MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (MGI:1346939|PMID:10523863) MGI PMID:10523863 MGI:1346939 NCBI chr 1:28,819,500...28,856,222
Ensembl chr 1:28,819,503...28,857,000
JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:228,854,587...229,308,054
Ensembl chr 1:228,854,595...229,308,906
JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:98,258,456...98,268,539
Ensembl chr 3:98,258,460...98,268,557
JBrowse link
G RARB retinoic acid receptor beta involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chr13:12,336,387...12,507,688 JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr18:55,903,693...55,906,976
Ensembl chr18:55,903,699...55,906,945
JBrowse link
G SALL1 spalt like transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:33,731,666...33,748,698
Ensembl chr 6:33,732,016...33,748,704
JBrowse link
G SCT secretin ISO RGD PMID:1711228 RGD:729899 NCBI chr 2:382,783...385,082
Ensembl chr 2:383,799...384,642
JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:59,317,930...59,347,274
Ensembl chr 7:59,318,010...59,347,267
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISS
IEA
AgBase
Ensembl
AgBase
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr10:8,306,136...8,435,307
Ensembl chr10:8,305,424...8,405,771
JBrowse link
G TNF tumor necrosis factor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:23,699,635...23,702,393
Ensembl chr 7:23,699,636...23,703,655
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3722952|PMID:16618415)
(MGI:3040447|PMID:15017552)
Ensembl
Ensembl
MGI
PMID:15017552 PMID:16618415 GO_REF:0000107 MGI:3040447 MGI:3722952 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,469...28,777,541
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:3722952|PMID:16618415), (MGI:5317412|PMID:21492869)
(MGI:5285062|PMID:21550054)
MGI
UniProt
PMID:16618415 PMID:21492869 PMID:21550054 GO_REF:0000024 MGI:3722952 MGI:5285062 MGI:5317412 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,710...131,579,703
JBrowse link
G FOXF1 forkhead box F1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:3590399|PMID:16127717) MGI PMID:16127717 MGI:3590399 NCBI chr14:14,858,470...14,938,156
Ensembl chr14:14,858,159...14,939,941
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3608164|PMID:16247775) Ensembl
Ensembl
MGI
PMID:16247775 GO_REF:0000107 MGI:3608164 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,071...52,697,903
JBrowse link
G HLX H2.0 like homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:79044|PMID:8557196) Ensembl
Ensembl
MGI
PMID:8557196 GO_REF:0000107 MGI:79044 NCBI chr10:10,263,441...10,269,882
Ensembl chr10:10,264,244...10,275,855
JBrowse link
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807614|PMID:18635606) Ensembl
Ensembl
MGI
PMID:18635606 GO_REF:0000107 MGI:3807614 NCBI chr12:39,143,119...39,201,631
Ensembl chr12:39,143,121...39,313,511
JBrowse link
G ID2 inhibitor of DNA binding 2 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 3:127,500,759...127,503,207
Ensembl chr 3:127,500,759...127,503,257
JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1858523|PMID:10821773) Ensembl
Ensembl
MGI
PMID:10821773 GO_REF:0000107 MGI:1858523 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121
JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,501...22,363,847
JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618450|PMID:16423343) Ensembl
Ensembl
MGI
PMID:16423343 GO_REF:0000107 MGI:3618450 NCBI chr17:26,417,793...26,451,707
Ensembl chr17:26,417,795...26,451,928
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:40,966,568...41,021,440
Ensembl chr 8:40,967,493...41,021,442
JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr 8:111,697,364...111,723,295
Ensembl chr 8:111,698,664...111,723,298
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1858523|PMID:10821773) Ensembl
Ensembl
MGI
PMID:10821773 GO_REF:0000107 MGI:1858523 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
G SHOX2 short stature homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3604918|PMID:16141225) Ensembl
Ensembl
MGI
PMID:16141225 GO_REF:0000107 MGI:3604918 NCBI chr13:97,879,586...97,892,276
Ensembl chr13:97,879,281...97,890,447
JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:95,460,046...95,463,428
Ensembl chr 3:95,459,937...95,464,066
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:129,797,438...129,800,568
Ensembl chr 3:129,798,704...129,800,329
JBrowse link
G TCF21 transcription factor 21 involved_in ISS
ISO
UniProt
UniProt
RGD
PMID:11804032 GO_REF:0000024 RGD:727206 NCBI chr 1:29,975,280...29,978,273
Ensembl chr 1:29,973,380...29,978,255
JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr 2:136,422,740...136,456,323
Ensembl chr 2:136,422,712...136,458,037
JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr14:123,343,695...123,547,332
Ensembl chr14:123,343,694...123,546,417
JBrowse link
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1095762|PMID:9268572)
(MGI:1095777|PMID:9272948)
Ensembl
Ensembl
MGI
PMID:9268572 PMID:9272948 GO_REF:0000107 MGI:1095762 MGI:1095777 NCBI chr 2:18,070,726...18,085,685
Ensembl chr 2:18,037,578...18,085,868
JBrowse link
G B9D1 B9 domain containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5300833|PMID:22179047) Ensembl
Ensembl
MGI
PMID:22179047 GO_REF:0000107 MGI:5300833 NCBI chr12:60,162,656...60,171,586
Ensembl chr12:60,162,707...60,171,961
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1095762|PMID:9268572) Ensembl
Ensembl
MGI
PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4430000|PMID:20043884) Ensembl
Ensembl
MGI
PMID:20043884 GO_REF:0000107 MGI:4430000 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,793
JBrowse link
G BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3799383|PMID:18539921) Ensembl
Ensembl
MGI
PMID:18539921 GO_REF:0000107 MGI:3799383 NCBI chr 4:75,191,256...75,210,988
Ensembl chr 4:75,191,257...75,215,907
JBrowse link
G C2CD3 C2 domain containing 3 centriole elongation regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3821640|PMID:19004860) Ensembl
Ensembl
MGI
PMID:19004860 GO_REF:0000107 MGI:3821640 NCBI chr 9:8,393,610...8,512,843
Ensembl chr 9:8,393,611...8,512,848
JBrowse link
G CHST11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3767479|PMID:16079159) Ensembl
Ensembl
MGI
PMID:16079159 GO_REF:0000107 MGI:3767479 NCBI chr 5:79,788,558...80,068,903
Ensembl chr 5:79,787,995...80,067,816
JBrowse link
G CPLANE1 ciliogenesis and planar polarity effector complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5648689|PMID:25877302) Ensembl
MGI
PMID:25877302 GO_REF:0000107 MGI:5648689 NCBI chr16:22,381,001...22,501,052
Ensembl chr16:22,381,327...22,500,998
JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4430000|PMID:20043884)
(MGI:2670493|PMID:12923052)
Ensembl
Ensembl
MGI
PMID:12923052 PMID:20043884 GO_REF:0000107 MGI:2670493 MGI:4430000 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G ECE1 endothelin converting enzyme 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:79,408,322...79,465,827
Ensembl chr 6:79,408,328...79,466,106
JBrowse link
G FBXW4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within ISO (MGI:1278141|PMID:9733575)
(MGI:1344213|PMID:10471509)
MGI PMID:9733575 PMID:10471509 MGI:1278141 MGI:1344213 NCBI chr14:112,628,988...112,736,631
Ensembl chr14:112,638,204...112,735,857
JBrowse link
G FLVCR1 FLVCR heme transporter 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3775000|PMID:18258918) Ensembl
Ensembl
MGI
PMID:18258918 GO_REF:0000107 MGI:3775000 NCBI chr 9:130,543,911...130,570,486
Ensembl chr 9:130,539,854...130,570,702
JBrowse link
G FREM2 FRAS1 related extracellular matrix 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5646594|PMID:26234751) Ensembl
Ensembl
MGI
PMID:26234751 GO_REF:0000107 MGI:5646594 NCBI chr11:13,775,267...14,116,377
Ensembl chr11:13,959,865...14,154,246
JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:5912570|PMID:27158779)
(MGI:4367921|PMID:19877275)
MGI PMID:19877275 PMID:27158779 MGI:4367921 MGI:5912570 NCBI chr 6:54,823,680...54,830,425
Ensembl chr 6:54,823,666...54,829,508
JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940) MGI PMID:17504940 PMID:17504941 MGI:3710451 MGI:3710452 NCBI chr10:28,509,168...28,511,554 JBrowse link
G GJA1 gap junction protein alpha 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3849919|PMID:19439426) MGI
Ensembl
PMID:19439426 GO_REF:0000107 MGI:3849919 NCBI chr 1:40,988,818...41,002,129
Ensembl chr 1:40,988,515...41,002,137
JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3833793|PMID:19056373) Ensembl
Ensembl
MGI
PMID:19056373 GO_REF:0000107 MGI:3833793 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3765370|PMID:17714700)
(MGI:1095762|PMID:9268572), (MGI:3692156|PMID:16254602), (MGI:3821634|PMID:19036983)
(MGI:5439039|PMID:22841643)
Ensembl
MGI
Ensembl
PMID:9268572 PMID:16254602 PMID:17714700 PMID:19036983 PMID:22841643 GO_REF:0000107 MGI:1095762 MGI:3692156 MGI:3765370 MGI:3821634 MGI:5439039 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,071...52,697,903
JBrowse link
G GNA12 G protein subunit alpha 12 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2182490|PMID:12077299) Ensembl
Ensembl
MGI
PMID:12077299 GO_REF:0000107 MGI:2182490 NCBI chr 3:2,002,494...2,105,937
Ensembl chr 3:2,000,863...2,105,949
JBrowse link
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (MGI:2182490|PMID:12077299) MGI PMID:12077299 MGI:2182490 NCBI chr 1:230,607,469...230,906,988
Ensembl chr 1:230,605,229...230,907,675
JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4943100|PMID:21377456) Ensembl
Ensembl
MGI
PMID:21377456 GO_REF:0000107 MGI:4943100 NCBI chr 4:35,368,788...35,565,394
Ensembl chr 4:35,371,136...35,564,919
JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2429440|PMID:12070084) Ensembl
Ensembl
MGI
PMID:12070084 GO_REF:0000107 MGI:2429440 NCBI chr14:16,460,089...16,462,979
Ensembl chr14:16,460,119...16,462,735
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,412
JBrowse link
G HDAC2 histone deacetylase 2 involved_in ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr 1:79,867,713...79,901,597
Ensembl chr 1:79,863,094...79,901,585
JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2667742|PMID:12869760) Ensembl
Ensembl
MGI
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,574...45,392,573
JBrowse link
G HOXC11 homeobox C11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2667742|PMID:12869760) Ensembl
Ensembl
MGI
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr 5:19,181,580...19,189,031
Ensembl chr 5:19,185,746...19,189,023
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760)
(MGI:3765370|PMID:17714700)
(MGI:83869|PMID:8900279)
MGI PMID:8900279 PMID:12869760 PMID:17714700 MGI:2667742 MGI:3765370 MGI:83869 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,910,281
JBrowse link
G HOXD12 homeobox D12 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3765370|PMID:17714700)
(MGI:83869|PMID:8900279)
Ensembl
MGI
Ensembl
PMID:8900279 PMID:17714700 GO_REF:0000107 MGI:3765370 MGI:83869 NCBI chr15:81,900,962...81,902,327
Ensembl chr15:81,901,032...81,901,994
JBrowse link
G HOXD13 homeobox D13 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3765370|PMID:17714700)
(MGI:83869|PMID:8900279)
(MGI:1097490|PMID:9342042)
Ensembl
MGI
PMID:8900279 PMID:9342042 PMID:17714700 GO_REF:0000107 MGI:1097490 MGI:3765370 MGI:83869 NCBI chr15:81,893,997...81,897,965
Ensembl chr15:81,894,121...81,898,944
JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,705...68,902,062
JBrowse link
G IFT140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5505384|PMID:23469164) Ensembl
Ensembl
MGI
PMID:23469164 GO_REF:0000107 MGI:5505384 NCBI chr 3:40,309,298...40,372,139
Ensembl chr 3:40,309,651...40,372,136
JBrowse link
G IFT52 intraflagellar transport 52 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3579954|PMID:15930098) Ensembl
Ensembl
MGI
PMID:15930098 GO_REF:0000107 MGI:3579954 NCBI chr17:46,209,956...46,246,696
Ensembl chr17:46,202,359...46,247,298
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:3821634|PMID:19036983)
(MGI:2660994|PMID:12701101), (MGI:3692156|PMID:16254602)
(MGI:3577662|PMID:15755804), (MGI:3579954|PMID:15930098)
(MGI:3579954|PMID:15930098)
MGI PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 MGI:2660994 MGI:3577662 MGI:3579954 MGI:3692156 MGI:3821634 NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,022,953
JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4822496|PMID:20660756) Ensembl
Ensembl
MGI
PMID:20660756 GO_REF:0000107 MGI:4822496 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121
JBrowse link
G INTU inturned planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5644615|PMID:25774014) Ensembl
Ensembl
MGI
PMID:25774014 GO_REF:0000107 MGI:5644615 NCBI chr 8:97,123,062...97,204,659
Ensembl chr 8:97,123,065...97,204,650
JBrowse link
G LMBR1 limb development membrane protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2151954|PMID:11606546) Ensembl
Ensembl
MGI
PMID:11606546 GO_REF:0000107 MGI:2151954 NCBI chr18:1,795,462...1,934,951
Ensembl chr18:1,795,490...1,934,949
JBrowse link
G LNPK lunapark, ER junction formation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1097490|PMID:9342042) Ensembl
MGI
PMID:9342042 GO_REF:0000107 MGI:1097490 NCBI chr15:81,721,637...81,805,706
Ensembl chr15:81,721,629...81,805,691
JBrowse link
G LRP4 LDL receptor related protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3623169|PMID:16517118) Ensembl
MGI
Ensembl
PMID:16517118 GO_REF:0000107 MGI:3623169 NCBI chr 2:15,616,137...15,672,876
Ensembl chr 2:15,616,131...15,672,874
JBrowse link
G LRP5 LDL receptor related protein 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3045836|PMID:15142971) Ensembl
Ensembl
MGI
PMID:15142971 GO_REF:0000107 MGI:3045836 NCBI chr 2:4,533,721...4,653,997
Ensembl chr 2:4,533,593...4,653,945
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3045836|PMID:15142971)
(MGI:4413372|PMID:19795512)
MGI PMID:15142971 PMID:19795512 MGI:3045836 MGI:4413372 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5771618|PMID:26755636) Ensembl
Ensembl
MGI
PMID:26755636 GO_REF:0000107 MGI:5771618 NCBI chr15:79,174,444...79,378,520
Ensembl chr15:79,173,033...79,381,035
JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5487695|PMID:23454480)
(MGI:4868517|PMID:21045211)
(MGI:4367169|PMID:19776033)
Ensembl
Ensembl
MGI
PMID:19776033 PMID:21045211 PMID:23454480 GO_REF:0000107 MGI:4367169 MGI:4868517 MGI:5487695 NCBI chr12:34,499,139...34,512,191
Ensembl chr12:34,499,141...34,512,187
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4948979|PMID:21465616) MGI
Ensembl
PMID:21465616 GO_REF:0000107 MGI:4948979 NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,377...5,632,608
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,766,897...49,771,634
JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (MGI:3790402|PMID:17360777) MGI PMID:17360777 MGI:3790402 NCBI chr 3:121,543,201...121,549,678
Ensembl chr 3:121,542,275...121,549,491
JBrowse link
G NOG noggin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206
JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,521,296...118,932,446
JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:37,890,200...37,897,935
Ensembl chr 4:37,852,587...37,897,935
JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804) MGI PMID:9636176 PMID:15755804 MGI:1267118 MGI:3577662 NCBI chr 7:28,632,065...28,658,958
Ensembl chr 7:28,632,082...28,658,953
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4822496|PMID:20660756) Ensembl
MGI
PMID:20660756 GO_REF:0000107 MGI:4822496 NCBI chr14:2,803,840...3,035,384
Ensembl chr14:2,804,061...3,035,241
JBrowse link
G SALL1 spalt like transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:33,731,666...33,748,698
Ensembl chr 6:33,732,016...33,748,704
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3806414|PMID:18729207) Ensembl
Ensembl
MGI
PMID:18729207 GO_REF:0000107 MGI:3806414 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,133...75,345,926
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3039193|PMID:15075292), (MGI:4822496|PMID:20660756)
(MGI:3579954|PMID:15930098)
(MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940)
Ensembl
Ensembl
MGI
PMID:15075292 PMID:15930098 PMID:17504940 PMID:17504941 PMID:20660756 GO_REF:0000107 MGI:3039193 MGI:3579954 MGI:3710451 MGI:3710452 MGI:4822496 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
G SMAD4 SMAD family member 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:100,521,843...100,633,501
Ensembl chr 1:100,514,791...100,628,029
JBrowse link
G TBC1D32 TBC1 domain family member 32 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4439200|PMID:20159594) Ensembl
Ensembl
MGI
PMID:20159594 GO_REF:0000107 MGI:4439200 NCBI chr 1:41,057,782...41,265,416
Ensembl chr 1:41,057,838...41,265,375
JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:36,878,662...36,887,513
Ensembl chr12:36,878,675...36,887,513
JBrowse link
G TBX3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5532232|PMID:23844108) Ensembl
Ensembl
MGI
PMID:23844108 GO_REF:0000107 MGI:5532232 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,767
JBrowse link
G TMEM107 transmembrane protein 107 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:53,394,500...53,397,064
Ensembl chr12:53,393,043...53,397,051
JBrowse link
G TMEM231 transmembrane protein 231 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5300833|PMID:22179047) Ensembl
Ensembl
MGI
PMID:22179047 GO_REF:0000107 MGI:5300833 NCBI chr 6:12,140,317...12,163,894
Ensembl chr 6:12,140,687...12,164,140
JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chr15:137,863,612...137,912,325
Ensembl chr15:137,863,609...137,912,477
JBrowse link
G TTBK2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (MGI:5493390|PMID:23141541) MGI PMID:23141541 MGI:5493390 NCBI chr 1:128,489,676...128,640,094
Ensembl chr 1:128,489,687...128,635,527
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3841503|PMID:19286674), (MGI:3844764|PMID:19334287) Ensembl
Ensembl
MGI
PMID:19286674 PMID:19334287 GO_REF:0000107 MGI:3841503 MGI:3844764 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,446...67,238,324
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3042355|PMID:15030764) MGI
Ensembl
PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chr 9:88,286,911...88,290,131 JBrowse link
G WDPCP WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within
ISO (PMID:27158779)
(MGI:5544506|PMID:24302887)
GO_Central
MGI
PMID:24302887 PMID:27158779 MGI:5544506 NCBI chr 3:78,435,154...78,726,313 JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4413372|PMID:19795512) Ensembl
Ensembl
MGI
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,455
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 ISO RGD PMID:19191224 RGD:2312786 NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS52 VPS52 subunit of GARP complex acts_upstream_of_or_within ISO (MGI:5449815|PMID:23142660) MGI PMID:23142660 MGI:5449815 NCBI chr 7:29,624,224...29,639,168
Ensembl chr 7:29,624,224...29,639,140
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659
JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RET ret proto-oncogene involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3513229|PMID:15569713) Ensembl
Ensembl
MGI
PMID:15569713 GO_REF:0000107 MGI:3513229 NCBI chr14:61,305,818...61,361,416
Ensembl chr14:61,305,841...61,361,415
JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3513229|PMID:15569713) Ensembl
MGI
PMID:15569713 GO_REF:0000107 MGI:3513229 NCBI chr 5:41,376...93,033
Ensembl chr 5:41,786...93,177
JBrowse link
G WNT4 Wnt family member 4 acts_upstream_of_or_within ISO (MGI:3624584|PMID:16546160) MGI PMID:16546160 MGI:3624584 NCBI chr 6:80,110,238...80,138,165 JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) MGI PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,296...226,217,312
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3608158|PMID:16207763)
(MGI:3624188|PMID:16611695)
(MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695)
MGI
Ensembl
PMID:16207763 PMID:16611695 GO_REF:0000107 MGI:3608158 MGI:3624188 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,513
JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:85,407,677...85,473,251
Ensembl chr 3:85,268,311...85,473,254
JBrowse link
G FBN1 fibrillin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:123,102,011...123,359,649
Ensembl chr 1:123,102,009...123,359,649
JBrowse link
G FBN2 fibrillin 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:131,150,665...131,370,241
Ensembl chr 2:131,152,127...131,370,466
JBrowse link
G FOXL2 forkhead box L2 acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:3043431|PMID:15056605) MGI
AgBase
PMID:15056605 GO_REF:0000024 MGI:3043431 NCBI chr13:79,708,693...79,709,825
Ensembl chr13:79,709,013...79,709,825
JBrowse link
G MFAP2 microfibril associated protein 2 involved_in IEA
IBA
(PMID:21873635) Ensembl
Ensembl
GO_Central
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 6:75,607,515...75,615,680
Ensembl chr 6:75,607,513...75,615,641
JBrowse link
G MFAP5 microfibril associated protein 5 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 5:62,742,520...62,757,522
Ensembl chr 5:62,742,315...62,759,190