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ONTOLOGY REPORT - ANNOTATIONS

Term:embryo development
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Accession:GO:0009790 term browser browse the term
Definition:The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
Synonyms:exact_synonym: embryogenesis;   embryonal development
 broad_synonym: embryogenesis and morphogenesis
 alt_id: GO:0009795
 xref: Wikipedia:Embryogenesis

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anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) BHF-UCL PMID:17286298 MGI:3721767 NCBI chrNW_004624817:4,830,164...4,850,565
Ensembl chrNW_004624817:4,820,163...4,851,339 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21515572) MGI PMID:21515572 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358 		JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1 like acts_upstream_of_or_within ISO (PMID:26787558) MGI PMID:26787558 NCBI chrNW_004624747:9,687,369...9,837,344
Ensembl chrNW_004624747:9,705,081...9,837,535 		JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chrNW_004624908:2,213,661...2,305,877
Ensembl chrNW_004624908:2,230,581...2,308,579 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:8622765) MGI PMID:8622765 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO (PMID:9790191) MGI PMID:9790191 NCBI chrNW_004624730:74,547,226...74,550,526 JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15870281) Ensembl
MGI		 PMID:15870281 GO_REF:0000107 NCBI chrNW_004624750:28,224,289...28,359,473 JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO (MGI:6109647|PMID:28839193)
(PMID:28839193)		 UniProt PMID:28839193 MGI:6109647 NCBI chrNW_004624822:577,840...626,126
Ensembl chrNW_004624822:565,559...624,710 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:9207801) UniProt PMID:9207801 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (PMID:14668413) MGI PMID:14668413 NCBI chrNW_004624749:17,804,630...17,956,504
Ensembl chrNW_004624749:17,803,772...17,829,805 		JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (MGI:4835157|PMID:9054360) BHF-UCL PMID:9054360 MGI:4835157 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:15967824) MGI PMID:15967824 NCBI chrNW_004624832:5,050,222...5,068,565
Ensembl chrNW_004624832:5,050,222...5,055,506 		JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within ISO (PMID:15967824) MGI PMID:15967824 NCBI chrNW_004624749:1,033,824...1,130,099
Ensembl chrNW_004624749:1,091,096...1,125,341 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16245338) MGI PMID:16245338 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chrNW_004624740:30,912,841...30,933,882
Ensembl chrNW_004624740:30,911,598...30,934,025 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004624735:12,997,358...13,018,765
Ensembl chrNW_004624735:12,997,408...13,018,533 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004624830:268,764...334,660 JBrowse link
G Slitrk6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:19936227) MGI PMID:19936227 NCBI chrNW_004624779:7,030,017...7,036,581
Ensembl chrNW_004624779:7,030,395...7,036,108 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO (PMID:24302887) MGI PMID:24302887 NCBI chrNW_004624762:9,901,021...10,303,217
Ensembl chrNW_004624762:9,970,904...10,303,046 		JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd24 ankyrin repeat domain 24 involved_in ISO (PMID:35175278)
(MGI:6885507|PMID:35175278)		 UniProt PMID:35175278 MGI:6885507 NCBI chrNW_004624828:5,410,032...5,441,824 JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:11875276) MGI PMID:11875276 NCBI chrNW_004624731:4,836,109...5,190,990
Ensembl chrNW_004624731:5,029,421...5,190,996 		JBrowse link
G Cdh23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:15537665)
(PMID:11138008), (PMID:17050716), (PMID:23217710)
(PMID:12121736)
(PMID:11322776)
(PMID:7610888), (PMID:8790740), (PMID:9039475)		 MGI PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... NCBI chrNW_004624754:5,356,006...5,725,774
Ensembl chrNW_004624754:5,393,733...5,724,876 		JBrowse link
G Clic5 chloride intracellular channel 5 acts_upstream_of_or_within ISO (PMID:17021174) MGI PMID:17021174 NCBI chrNW_004624754:14,335,173...14,433,721
Ensembl chrNW_004624754:14,370,425...14,434,269 		JBrowse link
G Clrn1 clarin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19414487), (PMID:19423712) Ensembl
MGI		 PMID:19414487 PMID:19423712 GO_REF:0000107 NCBI chrNW_004624730:28,373,111...28,412,282
Ensembl chrNW_004624730:28,373,120...28,412,282 		JBrowse link
G Clrn2 clarin 2 involved_in ISO (MGI:6810803|PMID:33496845) UniProt PMID:33496845 MGI:6810803 NCBI chrNW_004624755:14,319,151...14,330,329
Ensembl chrNW_004624755:14,317,093...14,329,604 		JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30380417) Ensembl
MGI		 PMID:30380417 GO_REF:0000107 NCBI chrNW_004624774:5,344,696...5,367,009
Ensembl chrNW_004624774:5,344,696...5,367,009 		JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within ISO (PMID:17876667), (PMID:23217710)
(PMID:15905332)		 MGI PMID:15905332 PMID:17876667 PMID:23217710 NCBI chrNW_004624754:21,744,784...21,763,161
Ensembl chrNW_004624754:21,749,312...21,762,896 		JBrowse link
G Myo3a myosin IIIA involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chrNW_004624796:2,774,153...2,983,853 JBrowse link
G Myo3b myosin IIIB involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chrNW_004624787:7,723,491...7,915,619
Ensembl chrNW_004624787:7,685,741...8,130,810 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO (PMID:11753415)
(PMID:12121736)
(PMID:17050716)		 MGI PMID:11753415 PMID:12121736 PMID:17050716 NCBI chrNW_004624863:205,468...283,840
Ensembl chrNW_004624863:205,478...283,839 		JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 acts_upstream_of_or_within ISO (PMID:24920589) MGI PMID:24920589 NCBI chrNW_004624801:4,612,890...4,630,454
Ensembl chrNW_004624801:4,612,849...4,630,451 		JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO (PMID:10978835)
(PMID:11124469)
(PMID:16887306)
(PMID:23217710)
(PMID:15537665)		 MGI PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 NCBI chrNW_004624791:9,042,311...9,992,341
Ensembl chrNW_004624791:9,195,902...9,990,131 		JBrowse link
G Pdzd7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24334608) TreeGrafter
MGI		 PMID:24334608 GO_REF:0000118 NCBI chrNW_004624831:608,270...624,679
Ensembl chrNW_004624831:608,970...624,617 		JBrowse link
G Pls1 plastin 1 involved_in ISO (MGI:5608770|PMID:25124451) UniProt PMID:25124451 MGI:5608770 NCBI chrNW_004624730:19,164,360...19,302,369
Ensembl chrNW_004624730:19,163,783...19,302,222 		JBrowse link
G Rest RE1 silencing transcription factor involved_in ISO (PMID:29961578)
(MGI:6193260|PMID:29961578)		 UniProt PMID:29961578 MGI:6193260 NCBI chrNW_004624761:12,464,243...12,495,294 JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624756:2,133,261...2,260,133
Ensembl chrNW_004624756:2,133,339...2,247,643 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004624735:12,997,358...13,018,765
Ensembl chrNW_004624735:12,997,408...13,018,533 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004624830:268,764...334,660 JBrowse link
G Sod1 superoxide dismutase 1 acts_upstream_of_or_within ISO (PMID:10464373), (PMID:10466888) MGI PMID:10464373 PMID:10466888 NCBI chrNW_004624745:20,032,003...20,037,958
Ensembl chrNW_004624745:20,032,011...20,037,958 		JBrowse link
G Strc stereocilin acts_upstream_of_or_within
involved_in		 ISO (PMID:18849963)
(PMID:30801007)
(MGI:5430850|PMID:21165971)		 MGI
UniProt		 PMID:18849963 PMID:21165971 PMID:30801007 MGI:5430850 NCBI chrNW_004624838:2,894,945...2,913,030
Ensembl chrNW_004624838:2,896,147...2,910,268 		JBrowse link
G Tecta tectorin alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30801007) Ensembl
MGI		 PMID:30801007 GO_REF:0000107 NCBI chrNW_004624880:4,040,402...4,122,377
Ensembl chrNW_004624880:4,041,020...4,122,377 		JBrowse link
G Tprn taperin acts_upstream_of_or_within ISO (PMID:30380417) MGI PMID:30380417 NCBI chrNW_004624760:750,833...758,329
Ensembl chrNW_004624760:750,871...758,433 		JBrowse link
G Triobp TRIO and F-actin binding protein acts_upstream_of_or_within ISO (PMID:20510926) MGI PMID:20510926 NCBI chrNW_004624752:10,130,857...10,186,242 JBrowse link
G Whrn whirlin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27117407) TreeGrafter
MGI		 PMID:27117407 GO_REF:0000118 NCBI chrNW_004624760:20,700,632...20,788,628
Ensembl chrNW_004624760:20,700,593...20,788,628 		JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9230313) Ensembl
MGI		 PMID:9230313 GO_REF:0000107 NCBI chrNW_004624913:1,139,165...1,195,477
Ensembl chrNW_004624913:1,139,165...1,195,230 		JBrowse link
G Epha2 EPH receptor A2 acts_upstream_of_or_within ISO (PMID:11287184) MGI PMID:11287184 NCBI chrNW_004624764:2,265,114...2,296,032
Ensembl chrNW_004624764:2,264,945...2,296,197 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:14511481) MGI PMID:14511481 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20630950) MGI PMID:20630950 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1b1 ATPase Na+/K+ transporting subunit beta 1 acts_upstream_of_or_within ISO MGI MGI:1888635 NCBI chrNW_004624826:7,058,046...7,076,919
Ensembl chrNW_004624826:7,054,371...7,076,919 		JBrowse link
G Bnip2 BCL2 interacting protein 2 acts_upstream_of_or_within ISO (PMID:19117032) MGI PMID:19117032 NCBI chrNW_004624781:12,468,675...12,497,130
Ensembl chrNW_004624781:12,468,711...12,488,360 		JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within ISO (PMID:15788452) MGI PMID:15788452 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845 		JBrowse link
G Dad1 defender against cell death 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10748466) Ensembl
MGI		 PMID:10748466 GO_REF:0000107 NCBI chrNW_004624825:9,062,984...9,081,939
Ensembl chrNW_004624825:9,045,163...9,082,634 		JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 acts_upstream_of_or_within ISO (PMID:15452149) MGI PMID:15452149 NCBI chrNW_004624737:24,135,083...24,164,935 JBrowse link
G Elf3 E74 like ETS transcription factor 3 acts_upstream_of_or_within ISO (PMID:16630543) MGI PMID:16630543 NCBI chrNW_004624807:8,719,835...8,725,911 JBrowse link
G Emg1 EMG1 N1-specific pseudouridine methyltransferase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20858271) MGI
Ensembl		 PMID:20858271 GO_REF:0000107 NCBI chrNW_004624860:3,605,114...3,611,108
Ensembl chrNW_004624860:3,605,126...3,611,108 		JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO (PMID:15788452) MGI PMID:15788452 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321 		JBrowse link
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (PMID:16630543) MGI PMID:16630543 NCBI chrNW_004624794:7,985,662...7,989,063
Ensembl chrNW_004624794:7,984,884...7,988,296 		JBrowse link
G G2e3 G2/M-phase specific E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:18511420) MGI PMID:18511420 NCBI chrNW_004624820:1,717,602...1,775,175
Ensembl chrNW_004624820:1,715,455...1,774,525 		JBrowse link
G Gdf9 growth differentiation factor 9 involved_in ISO (PMID:24313324) AgBase PMID:24313324 NCBI chrNW_004624733:39,235,128...39,240,557
Ensembl chrNW_004624733:39,237,296...39,240,206 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 involved_in ISO (PMID:11802795) BHF-UCL PMID:11802795 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759 		JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO (PMID:16880268) MGI PMID:16880268 NCBI chrNW_004624747:12,717,713...12,746,040
Ensembl chrNW_004624747:12,717,707...12,746,724 		JBrowse link
G Hormad1 HORMA domain containing 1 involved_in ISO (MGI:4868505|PMID:21079677) UniProt PMID:21079677 MGI:4868505 NCBI chrNW_004624772:18,379,154...18,403,456
Ensembl chrNW_004624772:18,379,745...18,403,745 		JBrowse link
G Kpna7 karyopherin subunit alpha 7 acts_upstream_of_or_within ISO (PMID:20699224) MGI PMID:20699224 NCBI chrNW_004624740:32,645,262...32,771,840
Ensembl chrNW_004624740:32,648,640...32,671,427 		JBrowse link
G Med21 mediator complex subunit 21 acts_upstream_of_or_within ISO (PMID:10500093) MGI PMID:10500093 NCBI chrNW_004624752:12,168,004...12,173,980
Ensembl chrNW_004624752:12,168,004...12,174,058 		JBrowse link
G N4bp2l2 NEDD4 binding protein 2 like 2 acts_upstream_of_or_within ISO (PMID:18360097) MGI PMID:18360097 NCBI chrNW_004624776:5,295,054...5,467,454 JBrowse link
G Nek2 NIMA related kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19117032) MGI
Ensembl		 PMID:19117032 GO_REF:0000107 NCBI chrNW_004624771:17,334,782...17,351,609
Ensembl chrNW_004624771:17,334,681...17,352,259 		JBrowse link
G Npm2 nucleophosmin/nucleoplasmin 2 involved_in ISO (PMID:12714744) UniProt PMID:12714744 NCBI chrNW_004624758:17,619,202...17,630,684
Ensembl chrNW_004624758:17,618,821...17,630,737 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (MGI:4946964|PMID:21258368)
(PMID:21258368)		 BHF-UCL PMID:21258368 MGI:4946964 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma acts_upstream_of_or_within ISO (PMID:12606345) MGI PMID:12606345 NCBI chrNW_004624747:21,191,165...21,212,521
Ensembl chrNW_004624747:21,191,150...21,213,544 		JBrowse link
G Psmc3 proteasome 26S subunit, ATPase 3 acts_upstream_of_or_within ISO (PMID:10945464) MGI PMID:10945464 NCBI chrNW_004624767:1,361,970...1,367,282
Ensembl chrNW_004624767:1,362,132...1,372,083 		JBrowse link
G Psmc4 proteasome 26S subunit, ATPase 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10945464) MGI
Ensembl		 PMID:10945464 GO_REF:0000107 NCBI chrNW_004624925:119,837...127,678
Ensembl chrNW_004624925:119,777...130,723 		JBrowse link
G Rpl13 ribosomal protein L13 acts_upstream_of ISO (PMID:26902285) MGI PMID:26902285 NCBI chrNW_004624746:339,103...341,900
Ensembl chrNW_004624746:339,103...341,828 		JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:26902285) Ensembl
MGI		 PMID:26902285 GO_REF:0000107 NCBI chrNW_004624865:4,984,353...4,990,187
Ensembl chrNW_004624865:4,985,620...4,990,120 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11313485)
(PMID:11263494)		 MGI
Ensembl		 PMID:11263494 PMID:11313485 GO_REF:0000107 NCBI chrNW_004624747:10,362,149...10,396,580
Ensembl chrNW_004624747:10,361,260...10,396,719 		JBrowse link
G Specc1 sperm antigen with calponin homology and coiled-coil domains 1 acts_upstream_of_or_within ISO (PMID:34166821) MGI PMID:34166821 NCBI chrNW_004624877:4,499,581...4,886,580 JBrowse link
G Spic Spi-C transcription factor acts_upstream_of_or_within ISO (PMID:16630543) MGI PMID:16630543 NCBI chrNW_004624750:6,476,108...6,490,261 JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:9921650) MGI PMID:9921650 NCBI chrNW_004624825:1,773,158...1,899,120
Ensembl chrNW_004624825:1,839,178...1,899,156 		JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (PMID:9921650) MGI PMID:9921650 NCBI chrNW_004624742:5,871,155...6,080,773 JBrowse link
G Thoc2 THO complex 2 acts_upstream_of_or_within ISO (PMID:24315442) MGI PMID:24315442 NCBI chrNW_004624797:2,299,694...2,411,269 JBrowse link
G Thoc5 THO complex subunit 5 acts_upstream_of_or_within ISO (PMID:24315442) MGI PMID:24315442 NCBI chrNW_004624747:5,840,862...5,874,350
Ensembl chrNW_004624747:5,840,862...5,874,334 		JBrowse link
G Xab2 XPA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15725628) Ensembl
MGI		 PMID:15725628 GO_REF:0000107 NCBI chrNW_004624828:704,400...711,963
Ensembl chrNW_004624828:704,300...712,251 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of ISO (PMID:26902285) MGI PMID:26902285 NCBI chrNW_004624878:621,214...776,363 JBrowse link
blastocyst formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin like 6A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:27869233) MGI
Ensembl		 PMID:27869233 GO_REF:0000107 NCBI chrNW_004624730:57,305,105...57,337,653
Ensembl chrNW_004624730:57,305,053...57,337,797 		JBrowse link
G Bysl bystin like acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17242206) MGI
Ensembl		 PMID:17242206 GO_REF:0000107 NCBI chrNW_004624754:17,195,248...17,204,827
Ensembl chrNW_004624754:17,195,251...17,205,198 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17784788) Ensembl
MGI		 PMID:17784788 GO_REF:0000107 NCBI chrNW_004624825:4,842,246...4,860,758
Ensembl chrNW_004624825:4,853,388...4,860,217 		JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme involved_in ISO (MGI:5702364|PMID:26416966)
(PMID:26416966)		 CACAO PMID:26416966 MGI:5702364 NCBI chrNW_004624768:17,372,754...17,387,732
Ensembl chrNW_004624768:17,371,628...17,387,881 		JBrowse link
G Gabpa GA binding protein transcription factor subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chrNW_004624745:13,787,352...13,820,781
Ensembl chrNW_004624745:13,788,288...13,821,599 		JBrowse link
G Kdm4c lysine demethylase 4C acts_upstream_of_or_within ISO (PMID:19696013) MGI PMID:19696013 NCBI chrNW_004624736:11,254,125...11,711,498
Ensembl chrNW_004624736:11,382,598...11,711,536 		JBrowse link
G Matr3 matrin 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624743:32,086,821...32,147,079
Ensembl chrNW_004624743:32,115,544...32,146,921 		JBrowse link
G Mfn2 mitofusin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16083859) Ensembl
MGI		 PMID:16083859 GO_REF:0000107 NCBI chrNW_004624818:1,041,371...1,065,061
Ensembl chrNW_004624818:1,041,369...1,065,023 		JBrowse link
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624752:10,394,025...10,411,265
Ensembl chrNW_004624752:10,394,008...10,412,412 		JBrowse link
G Mxi1 MAX interactor 1, dimerization protein acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624737:35,956,443...36,034,678
Ensembl chrNW_004624737:35,955,726...36,034,695 		JBrowse link
G Nop2 NOP2 nucleolar protein acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624860:3,273,944...3,284,150 JBrowse link
G Pbrm1 polybromo 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624822:4,529,350...4,666,714
Ensembl chrNW_004624822:4,529,007...4,663,165 		JBrowse link
G Pnldc1 PARN like ribonuclease domain containing exonuclease 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624855:3,088,457...3,111,711
Ensembl chrNW_004624855:3,087,365...3,112,123 		JBrowse link
G Ptpn18 protein tyrosine phosphatase non-receptor type 18 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624732:14,495,732...14,545,775 JBrowse link
G Rpl7l1 ribosomal protein L7 like 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23211737), (PMID:27869233) MGI
Ensembl		 PMID:23211737 PMID:27869233 GO_REF:0000107 NCBI chrNW_004624754:16,568,739...16,573,790
Ensembl chrNW_004624754:16,564,316...16,573,900 		JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chrNW_004624752:6,229,962...6,236,699
Ensembl chrNW_004624752:6,230,009...6,235,373 		JBrowse link
G Rtn4 reticulon 4 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624833:6,514,409...6,584,061 JBrowse link
G Sf3b1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chrNW_004624889:2,796,351...2,835,592 JBrowse link
G Sf3b6 splicing factor 3b subunit 6 acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chrNW_004624738:6,395,610...6,404,794
Ensembl chrNW_004624738:6,395,616...6,404,855 		JBrowse link
G Skil SKI like proto-oncogene acts_upstream_of_or_within ISO (PMID:10811619) MGI PMID:10811619 NCBI chrNW_004624730:48,376,625...48,404,059
Ensembl chrNW_004624730:48,377,499...48,404,141 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624786:1,226,131...1,271,872
Ensembl chrNW_004624786:1,238,082...1,271,875 		JBrowse link
G Tead4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO (PMID:18804437) MGI PMID:18804437 NCBI chrNW_004624860:314,404...368,212
Ensembl chrNW_004624860:297,601...368,274 		JBrowse link
G Tjp1 tight junction protein 1 acts_upstream_of_or_within ISO (PMID:18423437) MGI PMID:18423437 NCBI chrNW_004624768:2,826,848...3,034,195
Ensembl chrNW_004624768:2,828,324...3,034,302 		JBrowse link
G Tm4sf1 transmembrane 4 L six family member 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624730:26,643,632...26,652,858
Ensembl chrNW_004624730:26,642,794...26,652,963 		JBrowse link
G Uspl1 ubiquitin specific peptidase like 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624776:7,662,591...7,698,811
Ensembl chrNW_004624776:7,658,267...7,696,393 		JBrowse link
G Wdr74 WD repeat domain 74 acts_upstream_of_or_within ISO (PMID:21799883), (PMID:27869233) MGI PMID:21799883 PMID:27869233 NCBI chrNW_004624926:1,287,012...1,291,887
Ensembl chrNW_004624926:1,287,012...1,301,658 		JBrowse link
G Zp3 zona pellucida glycoprotein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624740:15,037,818...15,044,207
Ensembl chrNW_004624740:15,037,943...15,044,193 		JBrowse link
blastocyst growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (PMID:24036311) MGI PMID:24036311 NCBI chrNW_004624766:2,823,561...2,851,742
Ensembl chrNW_004624766:2,823,229...2,851,742 		JBrowse link
G Ints1 integrator complex subunit 1 acts_upstream_of_or_within ISO (PMID:17544522) MGI PMID:17544522 NCBI chrNW_004624740:26,952,076...26,983,595
Ensembl chrNW_004624740:26,956,688...26,983,394 		JBrowse link
G Nbn nibrin involved_in ISO (MGI:2680772|PMID:14612522)
(PMID:14612522)		 UniProt PMID:14612522 MGI:2680772 NCBI chrNW_004624744:2,013,936...2,061,726
Ensembl chrNW_004624744:2,013,922...2,061,708 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:24036311) MGI PMID:24036311 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
G Rad51b RAD51 paralog B acts_upstream_of_or_within ISO (PMID:10567591) MGI PMID:10567591 NCBI chrNW_004624734:32,560,579...33,173,357 JBrowse link
G Rln2 relaxin 2 involved_in ISO (PMID:21272344) CACAO PMID:21272344 NCBI chrNW_004624736:9,886,285...9,891,887
Ensembl chrNW_004624736:9,886,148...9,891,191 		JBrowse link
G Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (PMID:24036311) MGI PMID:24036311 NCBI chrNW_004624804:8,588,751...8,649,180 JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:11163203) MGI PMID:11163203 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968 		JBrowse link
G Ubtfl1 upstream binding transcription factor like 1 acts_upstream_of_or_within ISO (PMID:19915186) MGI PMID:19915186 NCBI chrNW_004624845:326,830...328,587
Ensembl chrNW_004624845:327,418...328,587 		JBrowse link
G Znf830 zinc finger protein 830 acts_upstream_of_or_within ISO (PMID:15988037) MGI PMID:15988037 NCBI chrNW_004624875:2,853,426...2,854,925
Ensembl chrNW_004624875:2,853,472...2,854,572 		JBrowse link
blastocyst hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap3 A-kinase anchoring protein 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624860:1,684,474...1,701,307
Ensembl chrNW_004624860:1,684,433...1,701,736 		JBrowse link
G Arhgdig Rho GDP dissociation inhibitor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chrNW_004624913:1,133,381...1,135,386
Ensembl chrNW_004624913:1,133,421...1,135,403 		JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624901:1,342,855...1,354,196
Ensembl chrNW_004624901:1,342,765...1,354,165 		JBrowse link
G Bcor BCL6 corepressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chrNW_004624762:15,338,331...15,465,683
Ensembl chrNW_004624762:15,420,596...15,465,873 		JBrowse link
G Ccdc24 coiled-coil domain containing 24 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624892:3,270,816...3,275,074
Ensembl chrNW_004624892:3,271,149...3,274,730 		JBrowse link
G Ccdc62 coiled-coil domain containing 62 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624747:22,839,359...22,871,145
Ensembl chrNW_004624747:22,842,925...22,871,392 		JBrowse link
G Cmtm3 CKLF like MARVEL transmembrane domain containing 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624746:19,830,839...19,840,350
Ensembl chrNW_004624746:19,830,839...19,839,430 		JBrowse link
G Coprs coordinator of PRMT5 and differentiation stimulator acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624875:4,345,593...4,352,097
Ensembl chrNW_004624875:4,345,599...4,352,081 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624766:2,823,561...2,851,742
Ensembl chrNW_004624766:2,823,229...2,851,742 		JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO (PMID:15901638) MGI PMID:15901638 NCBI chrNW_004624795:704,066...708,721
Ensembl chrNW_004624795:704,252...707,165 		JBrowse link
G Hcfc1 host cell factor C1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624946:571,776...591,543
Ensembl chrNW_004624946:571,774...590,247 		JBrowse link
G Hs3st6 heparan sulfate-glucosamine 3-sulfotransferase 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624913:323,778...330,347
Ensembl chrNW_004624913:323,854...331,489 		JBrowse link
G LOC101705495 solute carrier family 35 member E2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624818:8,032,088...8,050,523
Ensembl chrNW_004624818:8,038,653...8,046,467 		JBrowse link
G Lpar6 lysophosphatidic acid receptor 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624748:6,423,170...6,425,149
Ensembl chrNW_004624748:6,423,861...6,424,892 		JBrowse link
G Ndufa2 NADH:ubiquinone oxidoreductase subunit A2 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624743:33,398,027...33,400,346
Ensembl chrNW_004624743:33,398,027...33,400,271 		JBrowse link
G Necab1 N-terminal EF-hand calcium binding protein 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624744:1,021,362...1,211,739
Ensembl chrNW_004624744:1,021,089...1,211,694 		JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624849:3,818,115...3,907,250
Ensembl chrNW_004624849:3,817,915...3,908,888 		JBrowse link
G Phf6 PHD finger protein 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chrNW_004624797:14,081,381...14,140,180
Ensembl chrNW_004624797:14,081,302...14,128,487 		JBrowse link
G Plpp4 phospholipid phosphatase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chrNW_004624737:26,178,727...26,304,053
Ensembl chrNW_004624737:26,178,572...26,303,999 		JBrowse link
G Ppp4r4 protein phosphatase 4 regulatory subunit 4 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624734:10,522,300...10,623,887
Ensembl chrNW_004624734:10,522,298...10,620,543 		JBrowse link
G Rbbp8 RB binding protein 8, endonuclease acts_upstream_of_or_within ISO (PMID:15831459) MGI PMID:15831459 NCBI chrNW_004624770:9,026,592...9,100,818
Ensembl chrNW_004624770:9,023,392...9,119,183 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:11163203) MGI PMID:11163203 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11313485)
(PMID:11263494)		 MGI
Ensembl		 PMID:11263494 PMID:11313485 GO_REF:0000107 NCBI chrNW_004624747:10,362,149...10,396,580
Ensembl chrNW_004624747:10,361,260...10,396,719 		JBrowse link
G Smim14 small integral membrane protein 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chrNW_004624870:4,677,845...4,749,609
Ensembl chrNW_004624870:4,677,906...4,746,424 		JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624796:10,383,947...10,577,117
Ensembl chrNW_004624796:10,458,466...10,570,959 		JBrowse link
G Stmn3 stathmin 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624741:29,292,321...29,299,623
Ensembl chrNW_004624741:29,292,076...29,299,621 		JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624747:15,104,630...15,138,809 JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624893:499,222...512,341
Ensembl chrNW_004624893:498,973...512,443 		JBrowse link
G Tbl1xr1 TBL1X/Y related 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624730:54,835,624...55,013,474
Ensembl chrNW_004624730:54,835,624...54,884,835 		JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624895:3,544,410...3,553,981 JBrowse link
G Zbed6 zinc finger BED-type containing 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624807:7,158,405...7,165,500 JBrowse link
G Zfp14 ZFP14 zinc finger protein acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624794:10,717,241...10,796,502 JBrowse link
branching involved in labyrinthine layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adm adrenomedullin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16981008) Ensembl
MGI		 PMID:16981008 GO_REF:0000107 NCBI chrNW_004624766:2,402,152...2,404,343
Ensembl chrNW_004624766:2,401,769...2,404,446 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:9435295) MGI PMID:9435295 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO (PMID:23610556) MGI PMID:23610556 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050 		JBrowse link
G Gcm1 glial cells missing transcription factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10888880) MGI
Ensembl		 PMID:10888880 GO_REF:0000107 NCBI chrNW_004624850:405,001...421,208
Ensembl chrNW_004624850:406,840...421,128 		JBrowse link
G Grb2 growth factor receptor bound protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11369229) Ensembl
MGI		 PMID:11369229 GO_REF:0000107 NCBI chrNW_004624801:5,143,239...5,219,136
Ensembl chrNW_004624801:5,143,141...5,219,244 		JBrowse link
G Il10 interleukin 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12842419) Ensembl
MGI		 PMID:12842419 GO_REF:0000107 NCBI chrNW_004624807:4,687,249...4,691,658
Ensembl chrNW_004624807:4,687,176...4,691,732 		JBrowse link
G Llgl2 LLGL scribble cell polarity complex component 2 acts_upstream_of_or_within ISO (PMID:21606200) MGI PMID:21606200 NCBI chrNW_004624801:5,329,988...5,376,368
Ensembl chrNW_004624801:5,329,916...5,370,345 		JBrowse link
G Rspo3 R-spondin 3 acts_upstream_of_or_within ISO (PMID:16963017) MGI PMID:16963017 NCBI chrNW_004624753:1,520,337...1,600,054
Ensembl chrNW_004624753:1,520,210...1,600,432 		JBrowse link
G Socs3 suppressor of cytokine signaling 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11481489) Ensembl
MGI		 PMID:11481489 GO_REF:0000107 NCBI chrNW_004624801:7,841,230...7,843,912
Ensembl chrNW_004624801:7,840,889...7,843,860 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within ISO (PMID:17174946) MGI PMID:17174946 NCBI chrNW_004624804:8,092,700...8,105,478
Ensembl chrNW_004624804:8,093,346...8,106,193 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:30236446) MGI PMID:30236446 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955 		JBrowse link
cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in ISO (MGI:1354065|PMID:10716450) UniProt PMID:10716450 MGI:1354065 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321 		JBrowse link
G Gcm1 glial cells missing transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10888880) TreeGrafter
MGI
Ensembl		 PMID:10888880 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624850:405,001...421,208
Ensembl chrNW_004624850:406,840...421,128 		JBrowse link
G Krt8 keratin 8 acts_upstream_of_or_within ISO (PMID:11062258) MGI PMID:11062258 NCBI chrNW_004624904:970,136...978,211 JBrowse link
G Stk3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19786569) Ensembl
MGI		 PMID:19786569 GO_REF:0000107 NCBI chrNW_004624763:5,568,079...5,886,722
Ensembl chrNW_004624763:5,564,835...5,886,769 		JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19786569) MGI
Ensembl		 PMID:19786569 GO_REF:0000107 NCBI chrNW_004624790:9,415,172...9,521,103
Ensembl chrNW_004624790:9,415,177...9,521,051 		JBrowse link
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
cell migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amot angiomotin acts_upstream_of_or_within ISO (PMID:12676095) MGI PMID:12676095 NCBI chrNW_004624803:2,405,037...2,491,715
Ensembl chrNW_004624803:2,422,274...2,488,097 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (PMID:15004567) MGI PMID:15004567 NCBI chrNW_004624736:18,958,081...18,960,617
Ensembl chrNW_004624736:18,958,069...18,960,617 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:15142971) MGI PMID:15142971 NCBI chrNW_004624767:18,438,165...18,551,362
Ensembl chrNW_004624767:18,438,274...18,551,338 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15142971) MGI PMID:15142971 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISO (PMID:23063620) UniProt PMID:23063620 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within ISO (PMID:17151016) MGI PMID:17151016 NCBI chrNW_004624807:322,723...325,089
Ensembl chrNW_004624807:322,723...326,149 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:15004567) MGI PMID:15004567 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO (PMID:21069829) MGI PMID:21069829 NCBI chrNW_004624766:22,234,484...22,240,874
Ensembl chrNW_004624766:22,234,484...22,240,940 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:21146513) MGI PMID:21146513 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181 		JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:10421635) MGI PMID:10421635 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
cell-cell adhesion involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO (PMID:21069829) MGI PMID:21069829 NCBI chrNW_004624766:22,234,484...22,240,874
Ensembl chrNW_004624766:22,234,484...22,240,940 		JBrowse link
chordate embryonic development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1 DNA repair associated involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9171368) TreeGrafter
MGI		 PMID:9171368 GO_REF:0000118 NCBI chrNW_004624795:1,186,043...1,238,986
Ensembl chrNW_004624795:1,188,136...1,241,964 		JBrowse link
G Brca2 BRCA2 DNA repair associated acts_upstream_of_or_within ISO (PMID:9171368) MGI PMID:9171368 NCBI chrNW_004624776:5,497,552...5,573,465
Ensembl chrNW_004624776:5,497,779...5,550,993 		JBrowse link
G Cenpu centromere protein U acts_upstream_of_or_within ISO (PMID:23724000) MGI PMID:23724000 NCBI chrNW_004624769:15,450,423...15,491,393 JBrowse link
G Fas Fas cell surface death receptor ISO RGD PMID:11331665 RGD:8686426 NCBI chrNW_004624791:15,290,022...15,315,848
Ensembl chrNW_004624791:15,289,348...15,315,848 		JBrowse link
G Lims1 LIM zinc finger domain containing 1 acts_upstream_of_or_within ISO (PMID:15798193) MGI PMID:15798193 NCBI chrNW_004624749:11,720,492...11,846,571 JBrowse link
G Trip6 thyroid hormone receptor interactor 6 involved_in ISO (MGI:5509005|PMID:10826496) UniProt PMID:10826496 MGI:5509005 NCBI chrNW_004624740:16,292,909...16,297,042
Ensembl chrNW_004624740:16,292,912...16,296,982 		JBrowse link
G Vezt vezatin, adherens junctions transmembrane protein acts_upstream_of_or_within ISO (PMID:16199027) MGI PMID:16199027 NCBI chrNW_004624750:11,808,192...11,869,019
Ensembl chrNW_004624750:11,808,192...11,868,985 		JBrowse link
chorio-allantoic fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624850:3,324,553...3,481,439
Ensembl chrNW_004624850:3,322,782...3,481,512 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742 		JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:12446788) MGI PMID:12446788 NCBI chrNW_004624742:11,882,815...11,885,686
Ensembl chrNW_004624742:11,882,907...11,885,667 		JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO (PMID:10021343) MGI PMID:10021343 NCBI chrNW_004624800:1,174,703...1,234,661
Ensembl chrNW_004624800:1,175,679...1,234,951 		JBrowse link
G Erf ETS2 repressor factor acts_upstream_of_or_within ISO (PMID:17502352) MGI PMID:17502352 NCBI chrNW_004624907:499,913...506,719
Ensembl chrNW_004624907:499,883...507,629 		JBrowse link
G Itga4 integrin subunit alpha 4 acts_upstream_of_or_within ISO (PMID:7539359) MGI PMID:7539359 NCBI chrNW_004624844:3,264,794...3,353,355
Ensembl chrNW_004624844:3,265,110...3,354,087 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:10090727) MGI PMID:10090727 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389 		JBrowse link
G Vcam1 vascular cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:7539357)
(PMID:7530222)		 MGI PMID:7530222 PMID:7539357 NCBI chrNW_004624857:3,606,573...3,625,991
Ensembl chrNW_004624857:3,606,431...3,627,063 		JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO (PMID:11543617) MGI PMID:11543617 NCBI chrNW_004624752:3,818,073...3,856,602
Ensembl chrNW_004624752:3,818,025...3,857,027 		JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15226444) Ensembl
MGI		 PMID:15226444 GO_REF:0000107 NCBI chrNW_004624734:32,251,100...32,256,458
Ensembl chrNW_004624734:32,251,114...32,257,211 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624764:12,203,854...12,306,879
Ensembl chrNW_004624764:12,203,622...12,306,974 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004624846:4,043,010...4,046,660
Ensembl chrNW_004624846:4,044,893...4,046,248 		JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO (PMID:18606138) MGI PMID:18606138 NCBI chrNW_004624763:19,917,199...19,925,824
Ensembl chrNW_004624763:19,917,169...19,925,896 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO (PMID:16116426) MGI PMID:16116426 NCBI chrNW_004624818:8,267,111...8,283,755
Ensembl chrNW_004624818:8,267,128...8,278,725 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19008950)
(PMID:16116426)		 Ensembl
MGI		 PMID:16116426 PMID:19008950 GO_REF:0000107 NCBI chrNW_004624786:9,843,580...9,851,538
Ensembl chrNW_004624786:9,844,157...9,851,301 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (PMID:19008950) MGI PMID:19008950 NCBI chrNW_004624730:72,396,437...72,412,260
Ensembl chrNW_004624730:72,396,343...72,413,175 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:10072433) MGI PMID:10072433 NCBI chrNW_004624744:19,782,174...19,975,496
Ensembl chrNW_004624744:19,782,790...19,977,335 		JBrowse link
G Frzb frizzled related protein acts_upstream_of_or_within ISO (PMID:17433286) MGI PMID:17433286 NCBI chrNW_004624844:4,608,016...4,639,582
Ensembl chrNW_004624844:4,608,016...4,643,141 		JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within ISO (PMID:20940229) MGI PMID:20940229 NCBI chrNW_004624795:577,350...584,110
Ensembl chrNW_004624795:578,571...580,235 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:17395647) MGI PMID:17395647 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within ISO (PMID:20643356) MGI PMID:20643356 NCBI chrNW_004624764:8,753,343...8,783,891
Ensembl chrNW_004624764:8,753,567...8,783,162 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chrNW_004624739:3,509,020...3,511,890
Ensembl chrNW_004624739:3,508,838...3,511,864 		JBrowse link
G Hpn hepsin involved_in ISO (MGI:5306554|PMID:20683358) UniProt PMID:20683358 MGI:5306554 NCBI chrNW_004624794:8,426,005...8,439,758
Ensembl chrNW_004624794:8,421,791...8,439,782 		JBrowse link
G Myo3a myosin IIIA involved_in ISO (MGI:5766107|PMID:26754646) UniProt PMID:26754646 MGI:5766107 NCBI chrNW_004624796:2,774,153...2,983,853 JBrowse link
G Myo3b myosin IIIB involved_in ISO (PMID:26754646)
(MGI:5766107|PMID:26754646)		 UniProt PMID:26754646 MGI:5766107 NCBI chrNW_004624787:7,723,491...7,915,619
Ensembl chrNW_004624787:7,685,741...8,130,810 		JBrowse link
G Neurog1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,497,872...11,499,957
Ensembl chrNW_004624733:11,498,249...11,498,974 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:4822275|PMID:20727173)
(PMID:16916509)
(MGI:84247|PMID:8951055)		 UniProt
MGI
DFLAT		 PMID:8951055 PMID:16916509 PMID:20727173 MGI:4822275 MGI:84247 NCBI chrNW_004624831:375,851...453,968
Ensembl chrNW_004624831:375,866...453,930 		JBrowse link
G Pou3f4 POU class 3 homeobox 4 involved_in ISO (MGI:5284768|PMID:18231833) UniProt PMID:18231833 MGI:5284768 NCBI chrNW_004624852:5,036,585...5,040,160
Ensembl chrNW_004624852:5,037,373...5,040,139 		JBrowse link
G Ptk7 protein tyrosine kinase 7 (inactive) acts_upstream_of_or_within ISO (PMID:20704721) MGI PMID:20704721 NCBI chrNW_004624754:16,386,437...16,441,341
Ensembl chrNW_004624754:16,386,296...16,440,681 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chrNW_004624740:30,912,841...30,933,882
Ensembl chrNW_004624740:30,911,598...30,934,025 		JBrowse link
G Six1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12874121) Ensembl
MGI		 PMID:12874121 GO_REF:0000107 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:20346939) MGI PMID:20346939 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:18231833)
(MGI:5284768|PMID:18231833)
(PMID:17825816)		 UniProt
MGI		 PMID:17825816 PMID:18231833 MGI:5284768 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:18353863) MGI PMID:18353863 NCBI chrNW_004624799:9,694,167...9,721,468
Ensembl chrNW_004624799:9,694,374...9,719,385 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:6710296|PMID:33795231) UniProt PMID:33795231 MGI:6710296 NCBI chrNW_004624871:2,428,757...2,437,447
Ensembl chrNW_004624871:2,429,407...2,437,447 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004624733:11,578,934...11,587,250 JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within ISO (PMID:10575115) MGI PMID:10575115 NCBI chrNW_004624734:20,880,438...21,050,756
Ensembl chrNW_004624734:20,882,154...21,050,626 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:17433286)
(PMID:20940229)
(PMID:20643356)
(PMID:19008950)
(PMID:16116426), (PMID:18606138)		 MGI PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... NCBI chrNW_004624794:841,302...867,717
Ensembl chrNW_004624794:841,247...867,708 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:17433286) MGI PMID:17433286 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:21980308) MGI PMID:21980308 NCBI chrNW_004624805:3,964,448...4,044,546
Ensembl chrNW_004624805:3,964,450...4,042,527 		JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chrNW_004624730:8,824,370...8,874,614
Ensembl chrNW_004624730:8,816,643...8,874,649 		JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO (PMID:16571627) MGI PMID:16571627 NCBI chrNW_004624818:8,267,111...8,283,755
Ensembl chrNW_004624818:8,267,128...8,278,725 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571627) Ensembl
MGI		 PMID:16571627 GO_REF:0000107 NCBI chrNW_004624786:9,843,580...9,851,538
Ensembl chrNW_004624786:9,844,157...9,851,301 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:16571627), (PMID:17229766) MGI PMID:16571627 PMID:17229766 NCBI chrNW_004624794:841,302...867,717
Ensembl chrNW_004624794:841,247...867,708 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:15218525) MGI PMID:15218525 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO (PMID:18590716)
(PMID:18003640)		 MGI PMID:18003640 PMID:18590716 NCBI chrNW_004624908:1,713,590...1,720,709 JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within ISO (PMID:23383217) MGI PMID:23383217 NCBI chrNW_004624955:234,289...239,541
Ensembl chrNW_004624955:231,506...239,508 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:18590716)
(PMID:9226455)
(PMID:23383217)		 MGI PMID:9226455 PMID:18590716 PMID:23383217 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504941)
(PMID:17504940), (PMID:17504941)		 MGI PMID:17504940 PMID:17504941 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:9247260)
(PMID:18590716), (PMID:19286674)		 MGI PMID:9247260 PMID:18590716 PMID:19286674 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO (PMID:9226455) MGI PMID:9226455 NCBI chrNW_004624734:7,367,030...7,369,081
Ensembl chrNW_004624734:7,367,277...7,368,817 		JBrowse link
G Kif3a kinesin family member 3A involved_in
acts_upstream_of_or_within		 ISO (MGI:4888042|PMID:21209331)
(PMID:18590716), (PMID:19286674)		 BHF-UCL
MGI		 PMID:18590716 PMID:19286674 PMID:21209331 MGI:4888042 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121 		JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004624800:1,426,773...1,431,510
Ensembl chrNW_004624800:1,426,998...1,431,631 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004624764:3,853,055...3,951,182
Ensembl chrNW_004624764:3,853,055...3,947,521 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:9262482) MGI PMID:9262482 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (PMID:7720556)
(MGI:69552|PMID:7720556)		 UniProt PMID:7720556 MGI:69552 NCBI chrNW_004624753:18,988,842...19,014,799 JBrowse link
G Rnf220 ring finger protein 220 acts_upstream_of_or_within ISO (PMID:30177510) MGI PMID:30177510 NCBI chrNW_004624906:287,817...544,123
Ensembl chrNW_004624906:313,660...544,123 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISO (MGI:4888042|PMID:21209331)
(PMID:17442700), (PMID:18590716)
(PMID:17504941)		 BHF-UCL
MGI		 PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 MGI:4888042 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO (PMID:16357211) MGI PMID:16357211 NCBI chrNW_004624747:21,259,515...21,300,180
Ensembl chrNW_004624747:21,265,197...21,300,149 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:8299937) MGI PMID:8299937 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO (PMID:10932191) MGI PMID:10932191 NCBI chrNW_004624744:31,103,053...31,302,314
Ensembl chrNW_004624744:31,103,059...31,235,623 		JBrowse link
G Gjb6 gap junction protein beta 6 acts_upstream_of_or_within ISO (PMID:12490528) MGI PMID:12490528 NCBI chrNW_004624776:17,477,947...17,487,304
Ensembl chrNW_004624776:17,477,966...17,487,303 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:8291537) BHF-UCL PMID:8291537 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15190012) MGI PMID:15190012 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997 		JBrowse link
ectoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elf5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO (PMID:25446535) MGI PMID:25446535 NCBI chrNW_004624767:12,648,420...12,675,727
Ensembl chrNW_004624767:12,649,643...12,675,711 		JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO (PMID:25446535) MGI PMID:25446535 NCBI chrNW_004624745:25,096,587...25,113,953
Ensembl chrNW_004624745:25,096,337...25,110,123 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
embryo development ending in birth or egg hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ace angiotensin I converting enzyme ISO RGD PMID:1784836 RGD:12879818 NCBI chrNW_004624849:998,262...1,019,305
Ensembl chrNW_004624849:998,277...1,019,521 		JBrowse link
G Akirin2 akirin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624799:6,620,102...6,644,286
Ensembl chrNW_004624799:6,625,549...6,644,286 		JBrowse link
G Camsap3 calmodulin regulated spectrin associated protein family member 3 involved_in ISO (MGI:6094483|PMID:28860385) UniProt PMID:28860385 MGI:6094483 NCBI chrNW_004624828:689,010...703,496
Ensembl chrNW_004624828:688,564...704,174 		JBrowse link
G Cdk5r1 cyclin dependent kinase 5 regulatory subunit 1 involved_in ISO PMID:11276227 UniProt PMID:11276227 RGD:8554712 NCBI chrNW_004624875:538,752...542,874
Ensembl chrNW_004624875:538,790...543,044 		JBrowse link
G Evx1 even-skipped homeobox 1 acts_upstream_of_or_within ISO (PMID:7958869) MGI PMID:7958869 NCBI chrNW_004624739:3,354,191...3,358,961
Ensembl chrNW_004624739:3,355,578...3,358,947 		JBrowse link
G Fgf2 fibroblast growth factor 2 ISO RGD PMID:19476451 RGD:2315829 NCBI chrNW_004624777:3,268,674...3,321,424
Ensembl chrNW_004624777:3,268,953...3,321,145 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:14623825) MGI PMID:14623825 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Fxn frataxin acts_upstream_of_or_within ISO (PMID:10767347) MGI PMID:10767347 NCBI chrNW_004624736:4,027,054...4,047,881
Ensembl chrNW_004624736:4,027,354...4,047,854 		JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in ISO (PMID:15919177)
(MGI:3582004|PMID:15919177)		 UniProt PMID:15919177 MGI:3582004 NCBI chrNW_004624740:5,606,828...5,617,848
Ensembl chrNW_004624740:5,606,129...5,618,092 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437 		JBrowse link
G Rictor RPTOR independent companion of MTOR complex 2 involved_in ISO (MGI:3702793|PMID:16962829) UniProt PMID:16962829 MGI:3702793 NCBI chrNW_004624759:15,837,027...15,973,248
Ensembl chrNW_004624759:15,837,064...15,968,894 		JBrowse link
G Scel sciellin involved_in ISO (MGI:1928154|PMID:11112355) UniProt PMID:11112355 MGI:1928154 NCBI chrNW_004624751:22,710,932...22,808,109
Ensembl chrNW_004624751:22,712,795...22,792,581 		JBrowse link
G Sebox SEBOX homeobox acts_upstream_of_or_within ISO (PMID:18753614) MGI PMID:18753614 NCBI chrNW_004624786:967,234...969,884 JBrowse link
G Stox2 storkhead box 2 involved_in ISO (PMID:20643876) UniProt PMID:20643876 NCBI chrNW_004624769:14,517,544...14,785,700
Ensembl chrNW_004624769:14,518,344...14,779,307 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:16702401) MGI PMID:16702401 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
G Tp53bp2 tumor protein p53 binding protein 2 acts_upstream_of_or_within ISO (PMID:16702401) MGI PMID:16702401 NCBI chrNW_004624835:5,744,973...5,790,840
Ensembl chrNW_004624835:5,744,543...5,790,603 		JBrowse link
G Ubr3 ubiquitin protein ligase E3 component n-recognin 3 involved_in ISO (MGI:3718176|PMID:17462990)
(PMID:17462990)		 UniProt PMID:17462990 MGI:3718176 NCBI chrNW_004624787:7,358,426...7,610,872
Ensembl chrNW_004624787:7,358,441...7,608,483 		JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:11118896) MGI PMID:11118896 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843 		JBrowse link
G Chrdl1 chordin like 1 involved_in ISO (PMID:11118896), (PMID:11401399) MGI PMID:11118896 PMID:11401399 NCBI chrNW_004624803:5,011,132...5,144,899
Ensembl chrNW_004624803:5,010,746...5,144,989 		JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chrNW_004624903:2,596,049...2,601,315 JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in ISO (MGI:76306|PMID:7586755) BHF-UCL PMID:7586755 MGI:76306 NCBI chrNW_004624740:3,332,977...3,399,915 JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9230313) Ensembl
MGI		 PMID:9230313 GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:12121999) BHF-UCL PMID:12121999 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050 		JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004624859:5,510,442...5,572,122
Ensembl chrNW_004624859:5,510,384...5,572,228 		JBrowse link
G Wnt1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) BHF-UCL PMID:16826533 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (PMID:16647303)
(PMID:16647304)		 MGI PMID:16647303 PMID:16647304 NCBI chrNW_004624812:107,632...203,791
Ensembl chrNW_004624812:109,405...203,519 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in ISO (MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618) UniProt PMID:19767740 PMID:21935430 PMID:23806618 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chrNW_004624832:4,509,118...4,514,180
Ensembl chrNW_004624832:4,509,505...4,514,183 		JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chrNW_004624908:2,213,661...2,305,877
Ensembl chrNW_004624908:2,230,581...2,308,579 		JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist involved_in ISO (MGI:5543884|PMID:23850456) UniProt PMID:23850456 MGI:5543884 NCBI chrNW_004624771:10,965,170...11,072,462
Ensembl chrNW_004624771:10,967,542...10,968,048 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Mab21l2 mab-21 like 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15385160) MGI
Ensembl		 PMID:15385160 GO_REF:0000107 NCBI chrNW_004624858:2,074,510...2,077,282
Ensembl chrNW_004624858:2,075,456...2,076,535 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538 		JBrowse link
G Ofd1 OFD1 centriole and centriolar satellite protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chrNW_004624882:376,447...417,066
Ensembl chrNW_004624882:376,556...416,509 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:15013802) MGI PMID:15013802 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379 		JBrowse link
G Znf281 zinc finger protein 281 involved_in ISO (MGI:5448369|PMID:21915945)
(PMID:21915945)		 UniProt PMID:21915945 MGI:5448369 NCBI chrNW_004624798:154,949...158,292
Ensembl chrNW_004624798:154,980...158,287 		JBrowse link
embryonic brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO RGD PMID:19819228 RGD:11537397 NCBI chrNW_004624886:2,189,753...2,403,174
Ensembl chrNW_004624886:2,189,655...2,397,364 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO (PMID:24947469) MGI PMID:24947469 NCBI chrNW_004624755:16,252,488...16,361,794
Ensembl chrNW_004624755:16,252,582...16,355,053 		JBrowse link
G Cdc40 cell division cycle 40 involved_in ISO (PMID:33220177) UniProt PMID:33220177 NCBI chrNW_004624916:1,302,294...1,353,487
Ensembl chrNW_004624916:1,302,420...1,352,986 		JBrowse link
G Cdk20 cyclin dependent kinase 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28817564) Ensembl
MGI		 PMID:28817564 GO_REF:0000107 NCBI chrNW_004624868:4,225,779...4,248,252
Ensembl chrNW_004624868:4,241,976...4,248,196 		JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:32879327) MGI PMID:32879327 NCBI chrNW_004624800:7,182,588...9,280,407
Ensembl chrNW_004624800:7,181,020...9,279,678 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G En1 engrailed homeobox 1 involved_in ISO (PMID:7624797)
(MGI:75252|PMID:7624797)		 ParkinsonsUK-UCL PMID:7624797 MGI:75252 NCBI chrNW_004624732:26,333,642...26,338,450
Ensembl chrNW_004624732:26,333,653...26,337,904 		JBrowse link
G En2 engrailed homeobox 2 involved_in ISO (MGI:75252|PMID:7624797) ParkinsonsUK-UCL PMID:7624797 MGI:75252 NCBI chrNW_004624800:2,440,502...2,446,647
Ensembl chrNW_004624800:2,438,900...2,446,680 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20589884) MGI PMID:20589884 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474 		JBrowse link
G Megf8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (PMID:32203821) MGI PMID:32203821 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid NOT|involved_in ISO (MGI:6196220|PMID:30074985)
(PMID:30074985)		 ARUK-UCL PMID:30074985 MGI:6196220 NCBI chrNW_004624764:22,422,520...22,435,332
Ensembl chrNW_004624764:22,422,423...22,435,416 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:23454480) MGI PMID:23454480 NCBI chrNW_004624871:50,688...63,772
Ensembl chrNW_004624871:51,122...63,742 		JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (PMID:25220058) MGI PMID:25220058 NCBI chrNW_004624745:31,402,791...31,516,522
Ensembl chrNW_004624745:31,403,014...31,515,751 		JBrowse link
G Phf10 PHD finger protein 10 ISO RGD PMID:24056535 RGD:9588230 NCBI chrNW_004624850:5,633,967...5,652,283
Ensembl chrNW_004624850:5,633,973...5,652,271 		JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:20,976,765...20,985,408
Ensembl chrNW_004624754:20,976,515...20,985,393 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
G Prickle2 prickle planar cell polarity protein 2 involved_in ISO (PMID:17868671) MGI PMID:17868671 NCBI chrNW_004624888:1,537,080...1,825,955
Ensembl chrNW_004624888:1,537,138...1,821,215 		JBrowse link
G Rnf112 ring finger protein 112 involved_in ISO (PMID:26951452)
(MGI:6154439|PMID:26951452)		 UniProt PMID:26951452 MGI:6154439 NCBI chrNW_004624849:5,698,937...5,706,316
Ensembl chrNW_004624849:5,699,839...5,706,826 		JBrowse link
G Rpl10 ribosomal protein L10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624946:860,639...863,636 JBrowse link
G Slc6a8 solute carrier family 6 member 8 ISO RGD PMID:15918910 RGD:1599815 NCBI chrNW_004624946:389,806...396,653 JBrowse link
G Tbc1d23 TBC1 domain family member 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624789:13,685,458...13,749,820
Ensembl chrNW_004624789:13,685,089...13,753,046 		JBrowse link
G Tmem94 transmembrane protein 94 acts_upstream_of_or_within ISO (PMID:30526868) MGI PMID:30526868 NCBI chrNW_004624801:5,262,610...5,306,230
Ensembl chrNW_004624801:5,282,318...5,305,525 		JBrowse link
G Tra2b transformer 2 beta homolog acts_upstream_of_or_within ISO (PMID:22194695) MGI PMID:22194695 NCBI chrNW_004624730:70,801,227...70,822,188
Ensembl chrNW_004624730:70,801,207...70,822,178 		JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (PMID:21548880) MGI PMID:21548880 NCBI chrNW_004624804:9,841,401...10,002,592
Ensembl chrNW_004624804:9,848,512...10,002,693 		JBrowse link
G Wnt1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606 		JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:17184764) MGI PMID:17184764 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17184764) Ensembl
MGI		 PMID:17184764 GO_REF:0000107 NCBI chrNW_004624768:3,851,361...3,885,609
Ensembl chrNW_004624768:3,851,257...3,885,609 		JBrowse link
G Cdk20 cyclin dependent kinase 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28817564) Ensembl
MGI		 PMID:28817564 GO_REF:0000107 NCBI chrNW_004624868:4,225,779...4,248,252
Ensembl chrNW_004624868:4,241,976...4,248,196 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15958512) MGI
Ensembl		 PMID:15958512 GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO (PMID:18791178) MGI PMID:18791178 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:10498698)
(PMID:10572050)		 MGI PMID:10498698 PMID:10572050 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384 		JBrowse link
G Ppp1r13l protein phosphatase 1 regulatory subunit 13 like acts_upstream_of_or_within ISO (PMID:15661756) MGI PMID:15661756 NCBI chrNW_004624907:2,269,341...2,285,909
Ensembl chrNW_004624907:2,269,815...2,286,184 		JBrowse link
G Rara retinoic acid receptor alpha acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chrNW_004624795:2,935,432...2,975,226
Ensembl chrNW_004624795:2,934,731...2,967,232 		JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chrNW_004624904:1,255,854...1,277,946 JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004624847:3,424,388...3,469,708
Ensembl chrNW_004624847:3,424,365...3,472,075 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:304,890...413,655
Ensembl chrNW_004624781:389,481...413,728 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809 		JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:10049573) MGI PMID:10049573 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:18653562) MGI PMID:18653562 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536 		JBrowse link
G Cryaa crystallin alpha A acts_upstream_of_or_within ISO (PMID:18056999) MGI PMID:18056999 NCBI chrNW_004624745:27,636,932...27,639,814
Ensembl chrNW_004624745:27,637,267...27,639,371 		JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (MGI:5297296|PMID:22022403) BHF-UCL PMID:22022403 MGI:5297296 NCBI chrNW_004624756:23,209,402...23,213,817
Ensembl chrNW_004624756:23,209,390...23,213,802 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (MGI:3826935|PMID:18832390)
(PMID:18832390)		 CACAO PMID:18832390 MGI:3826935 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985)
(PMID:20579985)		 DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004624772:9,579,488...9,658,881 JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004624765:19,912,623...20,105,016
Ensembl chrNW_004624765:19,923,297...20,042,840 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:28778798) MGI PMID:28778798 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:28778798) MGI PMID:28778798 NCBI chrNW_004624738:9,510,452...9,546,985
Ensembl chrNW_004624738:9,510,512...9,545,933 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18582859) Ensembl
MGI		 PMID:18582859 GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chrNW_004624747:21,922,249...22,047,246 JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18985738)
(PMID:19653321)		 MGI PMID:18985738 PMID:19653321 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18653562) Ensembl
MGI		 PMID:18653562 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624904:1,475,664...1,507,588 JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624787:11,144,581...11,193,520 JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (PMID:15459098)
(MGI:3487212|PMID:15459098)		 BHF-UCL PMID:15459098 MGI:3487212 NCBI chrNW_004624871:2,428,757...2,437,447
Ensembl chrNW_004624871:2,429,407...2,437,447 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:9811866) MGI PMID:9811866 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (MGI:3617102|PMID:16445854)
(PMID:16445854)		 BHF-UCL PMID:16445854 MGI:3617102 NCBI chrNW_004624767:15,003,073...15,010,207
Ensembl chrNW_004624767:15,003,092...15,010,154 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:18436818) MGI PMID:18436818 NCBI chrNW_004624805:3,964,448...4,044,546
Ensembl chrNW_004624805:3,964,450...4,042,527 		JBrowse link
embryonic cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aatf apoptosis antagonizing transcription factor acts_upstream_of ISO (PMID:11071758) MGI PMID:11071758 NCBI chrNW_004624871:3,966,323...4,078,970
Ensembl chrNW_004624871:3,965,985...4,079,281 		JBrowse link
G Cul3 cullin 3 involved_in ISO (PMID:22358839)
(MGI:5312166|PMID:22358839)		 UniProt PMID:22358839 MGI:5312166 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727 		JBrowse link
G Dppa3 developmental pluripotency associated 3 acts_upstream_of_or_within ISO (PMID:15018652) MGI PMID:15018652 NCBI chrNW_004624860:4,974,941...4,978,295 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:9426063) MGI PMID:9426063 NCBI chrNW_004624907:2,249,323...2,263,999
Ensembl chrNW_004624907:2,250,133...2,263,947 		JBrowse link
G Gdf9 growth differentiation factor 9 involved_in ISO (PMID:24313324) AgBase PMID:24313324 NCBI chrNW_004624733:39,235,128...39,240,557
Ensembl chrNW_004624733:39,237,296...39,240,206 		JBrowse link
G Padi6 peptidyl arginine deiminase 6 involved_in ISO (MGI:6508663|PMID:16137333)
(PMID:16137333)		 UniProt PMID:16137333 MGI:6508663 NCBI chrNW_004624764:2,904,874...2,921,186
Ensembl chrNW_004624764:2,904,384...2,921,523 		JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11919689) Ensembl
MGI		 PMID:11919689 GO_REF:0000107 NCBI chrNW_004624730:15,226,786...15,399,097
Ensembl chrNW_004624730:15,226,379...15,355,857 		JBrowse link
G Rhoa ras homolog family member A involved_in ISO (PMID:25485583) AgBase PMID:25485583 NCBI chrNW_004624730:3,316,122...3,361,820 JBrowse link
G Top1 DNA topoisomerase I involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8943335) Ensembl
MGI		 PMID:8943335 GO_REF:0000107 NCBI chrNW_004624919:1,668,712...1,756,624
Ensembl chrNW_004624919:1,668,440...1,756,629 		JBrowse link
G Tpra1 transmembrane protein adipocyte associated 1 acts_upstream_of_or_within ISO (PMID:18459117) MGI PMID:18459117 NCBI chrNW_004624961:505,299...519,071
Ensembl chrNW_004624961:502,736...519,353 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Cdh11 cadherin 11 acts_upstream_of_or_within ISO (PMID:17143286) MGI PMID:17143286 NCBI chrNW_004624746:21,345,304...21,501,542
Ensembl chrNW_004624746:21,345,310...21,503,822 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:7590232) MGI PMID:7590232 NCBI chrNW_004624787:9,528,942...9,532,252
Ensembl chrNW_004624787:9,530,034...9,533,109 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:9,240,780...9,250,864
Ensembl chrNW_004624801:9,240,780...9,250,863 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (PMID:7874170), (PMID:7987400) BHF-UCL PMID:7874170 PMID:7987400 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9106663) MGI PMID:9106663 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17525797) MGI PMID:17525797 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO (PMID:15797856) MGI PMID:15797856 NCBI chrNW_004624741:25,138,678...25,197,194
Ensembl chrNW_004624741:25,183,329...25,196,880 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21377456) MGI PMID:21377456 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493 		JBrowse link
G Irx5 iroquois homeobox 5 involved_in ISO (PMID:22581230) UniProt PMID:22581230 NCBI chrNW_004624757:1,962,574...1,966,330
Ensembl chrNW_004624757:1,947,032...1,966,352 		JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO (PMID:18022611) MGI PMID:18022611 NCBI chrNW_004624820:9,667,371...9,677,488
Ensembl chrNW_004624820:9,667,262...9,677,774 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within ISO (PMID:18022611) MGI PMID:18022611 NCBI chrNW_004624744:3,544,258...3,806,097
Ensembl chrNW_004624744:3,544,552...3,796,821 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19763162) Ensembl
MGI		 PMID:19763162 GO_REF:0000107 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within ISO (PMID:23349049) MGI PMID:23349049 NCBI chrNW_004624930:491,220...660,476
Ensembl chrNW_004624930:491,892...667,530 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624761:15,223,789...15,269,685
Ensembl chrNW_004624761:15,225,356...15,269,810 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO (PMID:7758948)
(PMID:9729491)		 MGI PMID:7758948 PMID:9729491 NCBI chrNW_004624826:8,361,039...8,435,488
Ensembl chrNW_004624826:8,361,033...8,435,656 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491) MGI PMID:9729491 NCBI chrNW_004624760:5,656,456...5,684,383
Ensembl chrNW_004624760:5,656,521...5,692,934 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chrNW_004624754:14,601,574...14,868,469
Ensembl chrNW_004624754:14,679,974...14,867,729 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:20133625) MGI PMID:20133625 NCBI chrNW_004624730:74,187,981...74,277,857
Ensembl chrNW_004624730:74,187,995...74,277,200 		JBrowse link
G Six1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20515681) Ensembl
MGI		 PMID:20515681 GO_REF:0000107 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO (PMID:20515681) MGI PMID:20515681 NCBI chrNW_004624738:26,442,935...26,447,100
Ensembl chrNW_004624738:26,442,965...26,446,942 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO (PMID:20515681) MGI PMID:20515681 NCBI chrNW_004624734:40,397,276...40,409,951
Ensembl chrNW_004624734:40,397,559...40,409,997 		JBrowse link
G Slc39a1 solute carrier family 39 member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16652366) MGI
Ensembl		 PMID:16652366 GO_REF:0000107 NCBI chrNW_004624885:3,260,673...3,264,636
Ensembl chrNW_004624885:3,260,681...3,264,959 		JBrowse link
G Slc39a3 solute carrier family 39 member 3 acts_upstream_of_or_within ISO (PMID:16652366) MGI PMID:16652366 NCBI chrNW_004624828:5,819,220...5,827,875
Ensembl chrNW_004624828:5,820,306...5,827,846 		JBrowse link
G Smad2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15183723) Ensembl
MGI		 PMID:15183723 GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15190012) MGI PMID:15190012 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098 		JBrowse link
G Tbx15 T-box transcription factor 15 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728667) Ensembl
MGI		 PMID:15728667 GO_REF:0000107 NCBI chrNW_004624772:14,483,951...14,611,602
Ensembl chrNW_004624772:14,482,948...14,611,452 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in
acts_upstream_of_or_within		 ISO (MGI:80519|PMID:8622766)
(PMID:8622766)
(PMID:8622765)		 UniProt
MGI		 PMID:8622765 PMID:8622766 MGI:80519 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:16806156) MGI PMID:16806156 NCBI chrNW_004624825:1,773,158...1,899,120
Ensembl chrNW_004624825:1,839,178...1,899,156 		JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in ISO (MGI:2678274|PMID:12975342) BHF-UCL PMID:12975342 MGI:2678274 NCBI chrNW_004624788:8,447,679...8,535,821
Ensembl chrNW_004624788:8,447,542...8,535,959 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:8988167)
(PMID:15030764)
(PMID:8988166), (PMID:8988167)
(MGI:1100098|PMID:8988167)		 BHF-UCL
MGI		 PMID:8988166 PMID:8988167 PMID:15030764 MGI:1100098 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809 		JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chrNW_004624847:3,730,126...3,774,338
Ensembl chrNW_004624847:3,730,291...3,773,773 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:16998816)
(PMID:16054034)		 MGI PMID:16054034 PMID:16998816 NCBI chrNW_004624849:2,971,658...2,979,864
Ensembl chrNW_004624849:2,957,153...2,976,179 		JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:7670465) MGI PMID:7670465 NCBI chrNW_004624790:9,809,550...9,829,199
Ensembl chrNW_004624790:9,809,492...9,829,883 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:16806149) MGI PMID:16806149 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Cxcl8 C-X-C motif chemokine ligand 8 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004624730:1,744,097...1,747,206
Ensembl chrNW_004624730:1,743,916...1,747,293 		JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16308329) Ensembl
MGI		 PMID:16308329 GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16308329) Ensembl
MGI		 PMID:16308329 GO_REF:0000107 NCBI chrNW_004624776:16,022,118...16,055,413
Ensembl chrNW_004624776:16,019,835...16,055,498 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336 		JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004624756:23,209,402...23,213,817
Ensembl chrNW_004624756:23,209,390...23,213,802 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:10693670) MGI PMID:10693670 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:10693670) MGI PMID:10693670 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (PMID:10523863) MGI PMID:10523863 NCBI chrNW_004624886:2,455,704...2,489,593 JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (MGI:3795695|PMID:18519639)
(PMID:18519639)		 BHF-UCL PMID:18519639 MGI:3795695 NCBI chrNW_004624811:3,453,218...3,862,970 JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in ISO (MGI:3813934|PMID:19097194) UniProt PMID:19097194 MGI:3813934 NCBI chrNW_004624738:23,759,382...23,768,743
Ensembl chrNW_004624738:23,759,398...23,771,639 		JBrowse link
G Rarb retinoic acid receptor beta involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chrNW_004624788:2,738,341...3,493,140
Ensembl chrNW_004624788:3,257,697...3,493,132 		JBrowse link
G Rarres2 retinoic acid receptor responder 2 involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chrNW_004624800:6,138,236...6,140,922
Ensembl chrNW_004624800:6,139,006...6,140,679 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (PMID:18280297) UniProt PMID:18280297 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617 		JBrowse link
G Sct secretin ISO RGD PMID:1711228 RGD:729899 NCBI chrNW_004624766:21,841,994...21,842,754
Ensembl chrNW_004624766:21,842,014...21,842,683 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:304,890...413,655
Ensembl chrNW_004624781:389,481...413,728 		JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643 		JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004624754:24,623,059...24,625,647
Ensembl chrNW_004624754:24,623,425...24,625,531 		JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15017552)
(PMID:16618415)		 Ensembl
MGI		 PMID:15017552 PMID:16618415 GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:21550054)
(PMID:16618415), (PMID:21492869)		 MGI PMID:16618415 PMID:21492869 PMID:21550054 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529 		JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:16127717) MGI PMID:16127717 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16247775) MGI PMID:16247775 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Hlx H2.0 like homeobox acts_upstream_of_or_within ISO (PMID:8557196) MGI PMID:8557196 NCBI chrNW_004624835:4,223,252...4,227,892
Ensembl chrNW_004624835:4,223,511...4,227,979 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:18635606) MGI PMID:18635606 NCBI chrNW_004624871:4,662,104...4,713,125
Ensembl chrNW_004624871:4,661,669...4,712,960 		JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISO (PMID:16888283)
(MGI:4399020|PMID:16888283)		 UniProt PMID:16888283 MGI:4399020 NCBI chrNW_004624846:2,281,292...2,283,596
Ensembl chrNW_004624846:2,277,961...2,283,571 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10821773) Ensembl
MGI		 PMID:10821773 GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:19242925), (PMID:8291537) BHF-UCL PMID:8291537 PMID:19242925 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295 		JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (PMID:16423343) MGI PMID:16423343 NCBI chrNW_004624741:18,994,689...19,012,381
Ensembl chrNW_004624741:18,995,246...19,012,910 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624761:15,223,789...15,269,685
Ensembl chrNW_004624761:15,225,356...15,269,810 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10821773) MGI PMID:10821773 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:16141225) MGI PMID:16141225 NCBI chrNW_004624730:35,826,631...35,836,141
Ensembl chrNW_004624730:35,825,922...35,835,756 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (PMID:19660448)
(MGI:4365896|PMID:19660448)		 UniProt PMID:19660448 MGI:4365896 NCBI chrNW_004624738:26,442,935...26,447,100
Ensembl chrNW_004624738:26,442,965...26,446,942 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3052265|PMID:15254231)
(PMID:15254231)		 UniProt PMID:15254231 MGI:3052265 NCBI chrNW_004624846:4,043,010...4,046,660
Ensembl chrNW_004624846:4,044,893...4,046,248 		JBrowse link
G Tcf21 transcription factor 21 ISO RGD PMID:11804032 RGD:727206 NCBI chrNW_004624942:890,465...893,679
Ensembl chrNW_004624942:890,365...893,811 		JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624733:38,076,800...38,104,265
Ensembl chrNW_004624733:38,076,410...38,104,173 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624737:33,341,574...33,526,814
Ensembl chrNW_004624737:33,341,029...33,526,928 		JBrowse link
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:9272948)
(PMID:9268572)		 MGI PMID:9268572 PMID:9272948 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323 		JBrowse link
G B9d1 B9 domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22179047) Ensembl
MGI		 PMID:22179047 GO_REF:0000107 NCBI chrNW_004624849:5,635,996...5,644,139
Ensembl chrNW_004624849:5,633,076...5,644,221 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:20043884) MGI PMID:20043884 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397 		JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18539921) Ensembl
MGI		 PMID:18539921 GO_REF:0000107 NCBI chrNW_004624886:2,983,077...3,005,596
Ensembl chrNW_004624886:2,983,121...3,005,596 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004624817:2,880,775...3,060,399
Ensembl chrNW_004624817:2,880,976...3,042,004 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (PMID:16079159) MGI PMID:16079159 NCBI chrNW_004624750:4,227,229...4,391,177
Ensembl chrNW_004624750:4,223,561...4,391,218 		JBrowse link
G Cplane1 ciliogenesis and planar polarity effector complex subunit 1 acts_upstream_of_or_within ISO (PMID:25877302) MGI PMID:25877302 NCBI chrNW_004624759:17,763,200...17,879,603
Ensembl chrNW_004624759:17,763,585...17,855,954 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20043884)
(PMID:12923052)		 Ensembl
MGI		 PMID:12923052 PMID:20043884 GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:6,222,301...6,318,423
Ensembl chrNW_004624764:6,221,867...6,318,477 		JBrowse link
G Fbxw4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within ISO (PMID:10471509)
(PMID:9733575)		 MGI PMID:9733575 PMID:10471509 NCBI chrNW_004624831:1,107,689...1,183,839
Ensembl chrNW_004624831:1,107,689...1,183,958 		JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO (PMID:18258918) MGI PMID:18258918 NCBI chrNW_004624771:18,239,437...18,270,408 JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within ISO (PMID:26234751) MGI PMID:26234751 NCBI chrNW_004624920:1,683,342...1,908,602
Ensembl chrNW_004624920:1,683,351...1,904,557 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:27158779)
(PMID:19877275)		 MGI PMID:19877275 PMID:27158779 NCBI chrNW_004624832:4,509,118...4,514,180
Ensembl chrNW_004624832:4,509,505...4,514,183 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940), (PMID:17504941) MGI PMID:17504940 PMID:17504941 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596 		JBrowse link
G Gja1 gap junction protein alpha 1 acts_upstream_of_or_within ISO (PMID:19439426) MGI PMID:19439426 NCBI chrNW_004624798:9,358,996...9,364,413
Ensembl chrNW_004624798:9,359,004...9,364,313 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:19056373) MGI PMID:19056373 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:22841643)
(PMID:17714700)
(PMID:16254602), (PMID:19036983), (PMID:9268572)
(PMID:9268572)		 MGI PMID:9268572 PMID:16254602 PMID:17714700 PMID:19036983 PMID:22841643 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Gna12 G protein subunit alpha 12 acts_upstream_of_or_within ISO (PMID:12077299) MGI PMID:12077299 NCBI chrNW_004624740:30,134,262...30,245,079
Ensembl chrNW_004624740:30,133,435...30,245,079 		JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12077299) Ensembl
MGI		 PMID:12077299 GO_REF:0000107 NCBI chrNW_004624811:5,158,665...5,485,812
Ensembl chrNW_004624811:5,163,793...5,486,140 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21377456) MGI PMID:21377456 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (PMID:12070084) MGI PMID:12070084 NCBI chrNW_004624769:5,035,669...5,038,333
Ensembl chrNW_004624769:5,033,932...5,038,343 		JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chrNW_004624764:15,510,655...15,552,020
Ensembl chrNW_004624764:15,510,866...15,552,025 		JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO (MGI:4889029|PMID:21093383)
(PMID:21093383)		 BHF-UCL PMID:21093383 MGI:4889029 NCBI chrNW_004624856:4,834,197...4,861,546
Ensembl chrNW_004624856:4,834,217...4,861,592 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624904:2,027,792...2,030,148
Ensembl chrNW_004624904:2,027,993...2,030,148 		JBrowse link
G Hoxd12 homeobox D12 acts_upstream_of_or_within ISO (PMID:8900279)
(PMID:17714700)		 MGI PMID:8900279 PMID:17714700 NCBI chrNW_004624787:13,240,767...13,241,766
Ensembl chrNW_004624787:13,240,813...13,241,766 		JBrowse link
G Hoxd13 homeobox D13 acts_upstream_of_or_within ISO (PMID:9342042)
(PMID:8900279)
(PMID:17714700)		 MGI PMID:8900279 PMID:9342042 PMID:17714700 NCBI chrNW_004624787:13,233,932...13,237,210
Ensembl chrNW_004624787:13,233,932...13,238,503 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (PMID:15930098) MGI PMID:15930098 NCBI chrNW_004624790:10,674,002...10,726,292
Ensembl chrNW_004624790:10,678,911...10,726,265 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:15930098)
(PMID:12701101), (PMID:16254602)
(PMID:19036983)
(PMID:15755804), (PMID:15930098)		 MGI PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20660756) Ensembl
MGI		 PMID:20660756 GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769 		JBrowse link
G Intu inturned planar cell polarity protein involved_in
acts_upstream_of_or_within		 ISO (PMID:27158779)
(PMID:25774014)		 GO_Central
MGI		 PMID:25774014 PMID:27158779 NCBI chrNW_004624777:8,585,777...8,674,887
Ensembl chrNW_004624777:8,596,178...8,675,295 		JBrowse link
G Lmbr1 limb development membrane protein 1 acts_upstream_of_or_within ISO (PMID:11606546) MGI PMID:11606546 NCBI chrNW_004624800:1,494,183...1,648,978
Ensembl chrNW_004624800:1,494,192...1,648,978 		JBrowse link
G Lnpk lunapark, ER junction formation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9342042) Ensembl
MGI		 PMID:9342042 GO_REF:0000107 NCBI chrNW_004624787:13,049,079...13,127,052
Ensembl chrNW_004624787:13,048,690...13,120,751 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO (PMID:16517118) MGI PMID:16517118 NCBI chrNW_004624767:1,708,866...1,757,629 JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:15142971) MGI PMID:15142971 NCBI chrNW_004624767:18,438,165...18,551,362
Ensembl chrNW_004624767:18,438,274...18,551,338 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512)
(PMID:15142971)		 MGI PMID:15142971 PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 involved_in ISO (PMID:26755636) UniProt PMID:26755636 NCBI chrNW_004624787:10,392,738...10,566,563
Ensembl chrNW_004624787:10,405,701...10,565,943 		JBrowse link
G Megf8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (PMID:32203821) MGI PMID:32203821 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:19776033)
(PMID:21045211)
(PMID:23454480)		 MGI PMID:19776033 PMID:21045211 PMID:23454480 NCBI chrNW_004624871:50,688...63,772
Ensembl chrNW_004624871:51,122...63,742 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21465616) MGI
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chrNW_004624865:780,163...785,776 JBrowse link
G Nog noggin involved_in ISO (PMID:10080184) BHF-UCL PMID:10080184 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:4950000|PMID:21262216)
(PMID:21262216)		 BHF-UCL PMID:21262216 MGI:4950000 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:15755804), (PMID:9636176) MGI PMID:9636176 PMID:15755804 NCBI chrNW_004624753:18,988,842...19,014,799 JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:20660756) MGI PMID:20660756 NCBI chrNW_004624868:479,303...732,723
Ensembl chrNW_004624868:479,290...731,650 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (PMID:18280297)
(MGI:4461128|PMID:18470945)		 UniProt PMID:18280297 PMID:18470945 MGI:4461128 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18729207) Ensembl
MGI		 PMID:18729207 GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 ISO (PMID:17504940), (PMID:17504941)
(PMID:15930098)
(PMID:20660756)
(MGI:5559673|PMID:11044396)
(PMID:11044396)		 MGI
Roslin_Institute		 PMID:11044396 PMID:15930098 PMID:17504940 PMID:17504941 PMID:20660756 MGI:5559673 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smad4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325 		JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004624798:9,444,536...9,609,957
Ensembl chrNW_004624798:9,444,919...9,609,134 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3487212|PMID:15459098)
(PMID:15459098)		 BHF-UCL PMID:15459098 MGI:3487212 NCBI chrNW_004624871:2,428,757...2,437,447
Ensembl chrNW_004624871:2,429,407...2,437,447 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:27046536)
(PMID:23844108)
(PMID:12116211), (PMID:9207801)		 MGI
UniProt		 PMID:9207801 PMID:12116211 PMID:23844108 PMID:27046536 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
G Tmem107 transmembrane protein 107 involved_in ISO (MGI:5432629|PMID:22698544) UniProt PMID:22698544 MGI:5432629 NCBI chrNW_004624786:10,742,842...10,745,381
Ensembl chrNW_004624786:10,741,929...10,745,359 		JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within ISO (PMID:22179047) MGI PMID:22179047 NCBI chrNW_004624746:11,411,050...11,427,945
Ensembl chrNW_004624746:11,411,107...11,427,943 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004624847:3,424,388...3,469,708
Ensembl chrNW_004624847:3,424,365...3,472,075 		JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (PMID:23141541) MGI PMID:23141541 NCBI chrNW_004624804:9,841,401...10,002,592
Ensembl chrNW_004624804:9,848,512...10,002,693 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674), (PMID:19334287) MGI PMID:19286674 PMID:19334287 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within		 ISO (PMID:27158779)
(PMID:24302887)		 GO_Central
MGI		 PMID:24302887 PMID:27158779 NCBI chrNW_004624762:9,901,021...10,303,217
Ensembl chrNW_004624762:9,970,904...10,303,046 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) BHF-UCL PMID:16826533 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 ISO RGD PMID:19191224 RGD:2312786 NCBI chrNW_004624784:9,545,529...9,726,960
Ensembl chrNW_004624784:9,546,509...9,726,960 		JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps52 VPS52 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23142660) MGI
Ensembl		 PMID:23142660 GO_REF:0000107 NCBI chrNW_004624754:23,549,033...23,563,756
Ensembl chrNW_004624754:23,548,998...23,563,931 		JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336 		JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ret ret proto-oncogene acts_upstream_of_or_within ISO (PMID:15569713) MGI PMID:15569713 NCBI chrNW_004624922:382,462...413,227
Ensembl chrNW_004624922:382,399...413,281 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within ISO (PMID:15569713) MGI PMID:15569713 NCBI chrNW_004624752:72,545...127,321
Ensembl chrNW_004624752:72,615...127,325 		JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (PMID:16546160) MGI PMID:16546160 NCBI chrNW_004624764:6,913,027...6,934,650
Ensembl chrNW_004624764:6,921,811...6,933,392 		JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:16207763), (PMID:16611695) MGI PMID:16207763 PMID:16611695 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16207763)
(PMID:16611695)
(PMID:16207763), (PMID:16611695)		 Ensembl
MGI		 PMID:16207763 PMID:16611695 GO_REF:0000107 NCBI chrNW_004624768:3,851,361...3,885,609
Ensembl chrNW_004624768:3,851,257...3,885,609 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624833:5,654,805...5,722,185
Ensembl chrNW_004624833:5,654,016...5,723,519 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004624731:11,086,240...11,318,111
Ensembl chrNW_004624731:11,086,844...11,318,102 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004624774:12,863,446...13,116,929
Ensembl chrNW_004624774:12,863,446...13,116,545 		JBrowse link
G Foxl2 forkhead box L2 acts_upstream_of_or_within ISO (PMID:15056605) MGI PMID:15056605 NCBI chrNW_004624730:15,489,261...15,492,645
Ensembl chrNW_004624730:15,490,664...15,491,800 		JBrowse link
G Mfap2 microfibril associated protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:2,606,089...2,611,738
Ensembl chrNW_004624764:2,606,138...2,611,732 		JBrowse link
G Mfap5 microfibril associated protein 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624860:4,877,811...4,891,149
Ensembl chrNW_004624860:4,881,981...4,888,527 		JBrowse link
G Rarb retinoic acid receptor beta acts_upstream_of_or_within ISO (PMID:16207763) MGI PMID:16207763 NCBI chrNW_004624788:2,738,341...3,493,140
Ensembl chrNW_004624788:3,257,697...3,493,132 		JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:16207763) MGI PMID:16207763 NCBI chrNW_004624904:1,255,854...1,277,946 JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO (PMID:11830579)
(PMID:10595508)		 MGI PMID:10595508 PMID:11830579 NCBI chrNW_004624762:2,480,474...2,508,367
Ensembl chrNW_004624762:2,481,372...2,508,306 		JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:10921901) MGI PMID:10921901 NCBI chrNW_004624731:2,557,993...2,600,250
Ensembl chrNW_004624731:2,566,063...2,600,035 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18692041) Ensembl
MGI		 PMID:18692041 GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794329) Ensembl
MGI		 PMID:18794329 GO_REF:0000107 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11493558) MGI PMID:11493558 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336 		JBrowse link
G Foxp4 forkhead box P4 acts_upstream_of_or_within ISO (PMID:15361625) MGI PMID:15361625 NCBI chrNW_004624754:17,402,788...17,445,469
Ensembl chrNW_004624754:17,404,125...17,428,736 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933)
(PMID:9136932)		 MGI PMID:9136932 PMID:9136933 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:9731532) MGI PMID:9731532 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smad2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15183723) Ensembl
MGI		 PMID:15183723 GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within		 ISO (MGI:4946573|PMID:21305474)
(PMID:18462699)
(PMID:19619492)		 BHF-UCL
MGI		 PMID:18462699 PMID:19619492 PMID:21305474 MGI:4946573 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181 		JBrowse link
embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:15069081), (PMID:20034106) MGI PMID:15069081 PMID:20034106 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004624772:5,826,823...5,836,853
Ensembl chrNW_004624772:5,826,600...5,836,853 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) BHF-UCL PMID:15454078 NCBI chrNW_004624735:10,201,030...10,927,349
Ensembl chrNW_004624735:10,201,526...10,432,896 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within ISO (PMID:7720575) MGI PMID:7720575 NCBI chrNW_004624885:1,862,911...1,867,656
Ensembl chrNW_004624885:1,862,822...1,867,726 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15371327) Ensembl
MGI		 PMID:15371327 GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO (PMID:9362463) MGI PMID:9362463 NCBI chrNW_004624732:26,333,642...26,338,450
Ensembl chrNW_004624732:26,333,653...26,337,904 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950 		JBrowse link
G Hoxa13 homeobox A13 acts_upstream_of_or_within ISO (PMID:15733672) MGI PMID:15733672 NCBI chrNW_004624739:3,405,860...3,410,426
Ensembl chrNW_004624739:3,406,436...3,410,851 		JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within ISO (PMID:8625797) MGI PMID:8625797 NCBI chrNW_004624739:3,440,328...3,443,362
Ensembl chrNW_004624739:3,439,217...3,443,449 		JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within ISO (PMID:8625797) MGI PMID:8625797 NCBI chrNW_004624787:13,263,020...13,265,538
Ensembl chrNW_004624787:13,249,946...13,265,627 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331) BHF-UCL PMID:21209331 MGI:4888042 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9342042)
(PMID:22916278)		 MGI
Ensembl		 PMID:9342042 PMID:22916278 GO_REF:0000107 NCBI chrNW_004624787:13,049,079...13,127,052
Ensembl chrNW_004624787:13,048,690...13,120,751 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008)
(PMID:19653321)
(PMID:18256198)
(PMID:15880584)		 MGI PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chrNW_004624730:47,104,929...47,693,885
Ensembl chrNW_004624730:47,104,319...47,284,839 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337 		JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21465616) Ensembl
MGI		 PMID:21465616 GO_REF:0000107 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:19242925), (PMID:8291537) BHF-UCL PMID:8291537 PMID:19242925 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:4950000|PMID:21262216) BHF-UCL PMID:21262216 MGI:4950000 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431 		JBrowse link
G Reck reversion inducing cysteine rich protein with kazal motifs acts_upstream_of_or_within ISO (PMID:23213437) MGI PMID:23213437 NCBI chrNW_004624868:4,604,157...4,713,838
Ensembl chrNW_004624868:4,603,955...4,713,652 		JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17553904) MGI PMID:17553904 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO (PMID:18256198) MGI PMID:18256198 NCBI chrNW_004624763:23,067,682...23,182,945
Ensembl chrNW_004624763:23,067,691...23,182,059 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004624754:14,601,574...14,868,469
Ensembl chrNW_004624754:14,679,974...14,867,729 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11118883), (PMID:11476582) MGI PMID:11118883 PMID:11476582 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004624730:35,826,631...35,836,141
Ensembl chrNW_004624730:35,825,922...35,835,756 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:12116211) UniProt PMID:12116211 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11572777), (PMID:12490567) Ensembl
MGI		 PMID:11572777 PMID:12490567 GO_REF:0000107 NCBI chrNW_004624747:18,307,294...18,348,040
Ensembl chrNW_004624747:18,307,294...18,348,040 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:9811866)
(MGI:1313057|PMID:9811866)		 UniProt PMID:9811866 MGI:1313057 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379 		JBrowse link
G Tp63 tumor protein p63 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25503409) Ensembl
MGI		 PMID:25503409 GO_REF:0000107 NCBI chrNW_004624730:67,283,444...67,489,808
Ensembl chrNW_004624730:67,286,160...67,489,670 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:12175489) MGI PMID:12175489 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within
involved_in		 ISO (PMID:15880584)
(PMID:9362463)
(PMID:16826533)		 MGI
BHF-UCL		 PMID:9362463 PMID:15880584 PMID:16826533 MGI:48652 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO (PMID:15371327) MGI PMID:15371327 NCBI chrNW_004624937:776,810...797,365
Ensembl chrNW_004624937:776,810...797,310 		JBrowse link
embryonic genitalia morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12004962) Ensembl
MGI		 PMID:12004962 GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chrNW_004624868:479,303...732,723
Ensembl chrNW_004624868:479,290...731,650 		JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624733:38,076,800...38,104,265
Ensembl chrNW_004624733:38,076,410...38,104,173 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624737:33,341,574...33,526,814
Ensembl chrNW_004624737:33,341,029...33,526,928 		JBrowse link
embryonic heart tube development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apela apelin receptor early endogenous ligand involved_in ISO (MGI:5909243|PMID:28854362), (MGI:5913613|PMID:28663440) UniProt PMID:28663440 PMID:28854362 MGI:5909243 MGI:5913613 NCBI chrNW_004624758:11,944,563...11,954,027 JBrowse link
G Cdc42 cell division cycle 42 involved_in ISO (PMID:31219639) MGI PMID:31219639 NCBI chrNW_004624764:6,874,453...6,891,952 JBrowse link
G Chrd chordin involved_in ISO (PMID:17685487) MGI PMID:17685487 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18231602) Ensembl
MGI		 PMID:18231602 GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:6,222,301...6,318,423
Ensembl chrNW_004624764:6,221,867...6,318,477 		JBrowse link
G Edn1 endothelin 1 involved_in ISO (PMID:30735130)
(PMID:24875861)
(PMID:24875861), (PMID:31219639)		 MGI PMID:24875861 PMID:30735130 PMID:31219639 NCBI chrNW_004624756:13,842,482...13,849,003
Ensembl chrNW_004624756:13,842,164...13,849,029 		JBrowse link
G Ednra endothelin receptor type A involved_in ISO (PMID:20929948)
(PMID:30735130)
(PMID:24875861), (PMID:31219639)		 MGI PMID:20929948 PMID:24875861 PMID:30735130 PMID:31219639 NCBI chrNW_004624853:6,298,406...6,362,353
Ensembl chrNW_004624853:6,302,751...6,360,089 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16720879) MGI PMID:16720879 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO (PMID:16678147) MGI PMID:16678147 NCBI chrNW_004624756:23,060,065...23,062,407
Ensembl chrNW_004624756:23,060,751...23,062,343 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:16678147) MGI PMID:16678147 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933)
(PMID:9136932)		 MGI PMID:9136932 PMID:9136933 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318 		JBrowse link
G Gja1 gap junction protein alpha 1 acts_upstream_of_or_within ISO (PMID:14732399) MGI PMID:14732399 NCBI chrNW_004624798:9,358,996...9,364,413
Ensembl chrNW_004624798:9,359,004...9,364,313 		JBrowse link
G Gja5 gap junction protein alpha 5 acts_upstream_of_or_within ISO (PMID:14732399)
(PMID:22203979)		 MGI PMID:14732399 PMID:22203979 NCBI chrNW_004624772:16,810,723...16,828,328
Ensembl chrNW_004624772:16,813,011...16,814,084 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:9500551) MGI PMID:9500551 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:15459110) MGI PMID:15459110 NCBI chrNW_004624737:3,897,907...3,903,828
Ensembl chrNW_004624737:3,897,871...3,904,083 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668)
(PMID:19000668)		 UniProt PMID:19000668 MGI:3827087 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:14500757) MGI PMID:14500757 NCBI chrNW_004624795:3,572,025...3,605,675
Ensembl chrNW_004624795:3,572,266...3,607,126 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chrNW_004624743:8,072,871...8,235,174
Ensembl chrNW_004624743:8,072,673...8,235,252 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538 		JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15843414) Ensembl
MGI		 PMID:15843414 GO_REF:0000107 NCBI chrNW_004624733:16,881,189...16,884,245
Ensembl chrNW_004624733:16,881,191...16,884,210 		JBrowse link
G Nkx2-6 NK2 homeobox 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:18,908,988...18,914,794
Ensembl chrNW_004624758:18,911,010...18,914,001 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644 		JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (PMID:25220058) MGI PMID:25220058 NCBI chrNW_004624745:31,402,791...31,516,522
Ensembl chrNW_004624745:31,403,014...31,515,751 		JBrowse link
G Plxna4 plexin A4 involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chrNW_004624783:3,831,320...4,292,594
Ensembl chrNW_004624783:3,658,835...4,285,638 		JBrowse link
G Slc8a1 solute carrier family 8 member A1 acts_upstream_of_or_within ISO (PMID:21302256) MGI PMID:21302256 NCBI chrNW_004624738:21,648,277...22,026,385
Ensembl chrNW_004624738:21,651,489...21,939,927 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:17610846) MGI PMID:17610846 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181 		JBrowse link
G Sox18 SRY-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:17610846) MGI PMID:17610846 NCBI chrNW_004624741:29,679,274...29,681,069
Ensembl chrNW_004624741:29,679,091...29,681,049 		JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within ISO (PMID:15843414) MGI PMID:15843414 NCBI chrNW_004624740:25,645,526...25,698,235
Ensembl chrNW_004624740:25,645,895...25,697,132 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:23844108) MGI PMID:23844108 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
G Tmem94 transmembrane protein 94 acts_upstream_of_or_within ISO (PMID:30526868) MGI PMID:30526868 NCBI chrNW_004624801:5,262,610...5,306,230
Ensembl chrNW_004624801:5,282,318...5,305,525 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004624847:3,424,388...3,469,708
Ensembl chrNW_004624847:3,424,365...3,472,075 		JBrowse link
embryonic heart tube elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx20 T-box transcription factor 20 involved_in ISO (MGI:3579960|PMID:15901664)
(PMID:15901664)		 BHF-UCL PMID:15901664 MGI:3579960 NCBI chrNW_004624740:25,645,526...25,698,235
Ensembl chrNW_004624740:25,645,895...25,697,132 		JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:11076684) MGI PMID:11076684 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759 		JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cimap3 ciliary microtubule associated protein 3 acts_upstream_of_or_within ISO (PMID:20643351) MGI PMID:20643351 NCBI chrNW_004624772:7,080,535...7,096,603
Ensembl chrNW_004624772:7,091,047...7,097,970 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in ISO (MGI:3054669|PMID:15475956) BHF-UCL PMID:15475956 MGI:3054669 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:21209331)
(MGI:4888042|PMID:21209331)		 CACAO PMID:21209331 MGI:4888042 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Invs inversin acts_upstream_of_or_within ISO (PMID:9192865) MGI PMID:9192865 NCBI chrNW_004624825:701,335...866,598
Ensembl chrNW_004624825:702,347...866,353 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISS CAFA GO_REF:0000024 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9192865) Ensembl
MGI		 PMID:9192865 GO_REF:0000107 NCBI chrNW_004624733:16,881,189...16,884,245
Ensembl chrNW_004624733:16,881,191...16,884,210 		JBrowse link
G Pitx2 paired like homeodomain 2 involved_in ISO (MGI:3783941|PMID:17234970)
(PMID:17234970)		 BHF-UCL PMID:17234970 MGI:3783941 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384 		JBrowse link
embryonic heart tube morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:7,929,997...8,004,235
Ensembl chrNW_004624732:7,929,583...8,005,072 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in ISO (PMID:19609448)
(MGI:4354447|PMID:19609448)		 BHF-UCL PMID:19609448 MGI:4354447 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISS CAFA GO_REF:0000024 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Ryr2 ryanodine receptor 2 involved_in ISO (MGI:1267127|PMID:9628868) UniProt PMID:9628868 MGI:1267127 NCBI chrNW_004624775:12,954,653...13,650,449
Ensembl chrNW_004624775:12,956,042...13,419,381 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (MGI:4946573|PMID:21305474)
(PMID:21305474)		 BHF-UCL PMID:21305474 MGI:4946573 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181 		JBrowse link
G Tbx20 T-box transcription factor 20 involved_in ISO (MGI:3579960|PMID:15901664)
(PMID:15901664)		 BHF-UCL PMID:15901664 MGI:3579960 NCBI chrNW_004624740:25,645,526...25,698,235
Ensembl chrNW_004624740:25,645,895...25,697,132 		JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004624766:4,694,337...4,935,121
Ensembl chrNW_004624766:4,694,016...4,928,302 		JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004624832:4,821,697...4,837,257 JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004624878:621,214...776,363 JBrowse link
embryonic hemopoiesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:8,822,955...8,825,019
Ensembl chrNW_004624752:8,822,740...8,825,032 		JBrowse link
G Ccdc134 coiled-coil domain containing 134 acts_upstream_of_or_within ISO (PMID:29115376) MGI PMID:29115376 NCBI chrNW_004624752:6,872,192...6,885,435
Ensembl chrNW_004624752:6,871,911...6,885,396 		JBrowse link
G Flt3lg fms related receptor tyrosine kinase 3 ligand involved_in ISO (PMID:21149635) DFLAT PMID:21149635 NCBI chrNW_004624832:4,733,820...4,739,214 JBrowse link
G Gata1 GATA binding protein 1 acts_upstream_of_or_within ISO (PMID:9576834) MGI PMID:9576834 NCBI chrNW_004624893:595,948...602,980
Ensembl chrNW_004624893:595,967...602,979 		JBrowse link
G Gata3 GATA binding protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10631184)
(PMID:7550312)		 Ensembl
MGI		 PMID:7550312 PMID:10631184 GO_REF:0000107 NCBI chrNW_004624775:2,985,077...3,014,567
Ensembl chrNW_004624775:2,994,164...3,015,392 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:16787915) MGI PMID:16787915 NCBI chrNW_004624734:39,414,458...39,471,705
Ensembl chrNW_004624734:39,411,824...39,471,705 		JBrowse link
G Kat6a lysine acetyltransferase 6A acts_upstream_of_or_within ISO (PMID:16702405) MGI PMID:16702405 NCBI chrNW_004624780:1,237,326...1,378,718
Ensembl chrNW_004624780:1,240,292...1,376,072 		JBrowse link
G Kdr kinase insert domain receptor involved_in ISO (MGI:74276|PMID:7596435) UniProt PMID:7596435 MGI:74276 NCBI chrNW_004624761:14,330,224...14,380,680
Ensembl chrNW_004624761:14,330,489...14,379,051 		JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase involved_in ISO (MGI:4820916|PMID:20536544) UniProt PMID:20536544 MGI:4820916 NCBI chrNW_004624761:14,733,912...14,831,428 JBrowse link
G Kitlg KIT ligand involved_in ISO (PMID:21149635) DFLAT PMID:21149635 NCBI chrNW_004624837:7,456,116...7,541,764
Ensembl chrNW_004624837:7,456,120...7,541,730 		JBrowse link
G Klf1 KLF transcription factor 1 acts_upstream_of_or_within ISO (PMID:7753194)
(PMID:19409822)		 MGI PMID:7753194 PMID:19409822 NCBI chrNW_004624901:467,937...471,917
Ensembl chrNW_004624901:468,662...471,500 		JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO (PMID:9639506) MGI PMID:9639506 NCBI chrNW_004624784:13,824,507...13,912,672
Ensembl chrNW_004624784:13,824,541...13,908,077 		JBrowse link
G Lmo2 LIM domain only 2 acts_upstream_of_or_within ISO (PMID:10631184) MGI PMID:10631184 NCBI chrNW_004624767:13,245,783...13,257,322
Ensembl chrNW_004624767:13,245,984...13,257,440 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:14500757) MGI PMID:14500757 NCBI chrNW_004624795:3,572,025...3,605,675
Ensembl chrNW_004624795:3,572,266...3,607,126 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO (PMID:11468159) MGI PMID:11468159 NCBI chrNW_004624826:2,944,272...3,250,957
Ensembl chrNW_004624826:2,945,004...3,215,110 		JBrowse link
G Sh2b3 SH2B adaptor protein 3 acts_upstream_of_or_within
acts_upstream_of_negative_effect		 ISO (PMID:14612394) MGI
BHF-UCL		 PMID:14612394 NCBI chrNW_004624747:20,729,142...20,759,631
Ensembl chrNW_004624747:20,730,751...20,759,625 		JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in
acts_upstream_of_or_within		 ISO (PMID:19200805)
(PMID:7830794)
(PMID:15677556)
(PMID:9269761)
(PMID:7624372)
(MGI:3848867|PMID:19200805)		 UniProt
MGI		 PMID:7624372 PMID:7830794 PMID:9269761 PMID:15677556 PMID:19200805 MGI:3848867 NCBI chrNW_004624859:5,586,489...5,601,225
Ensembl chrNW_004624859:5,586,977...5,601,460 		JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in ISO (MGI:2678274|PMID:12975342) BHF-UCL PMID:12975342 MGI:2678274 NCBI chrNW_004624788:8,447,679...8,535,821
Ensembl chrNW_004624788:8,447,542...8,535,959 		JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (PMID:22187428) MGI PMID:22187428 NCBI chrNW_004624801:7,552,644...7,644,755
Ensembl chrNW_004624801:7,552,030...7,638,834 		JBrowse link
G Tpo thyroid peroxidase involved_in ISO (PMID:21149635) DFLAT PMID:21149635 NCBI chrNW_004624846:1,934,084...1,962,637
Ensembl chrNW_004624846:1,934,469...1,961,291 		JBrowse link
G Zfpm1 zinc finger protein, FOG family member 1 involved_in ISO (MGI:3583527|PMID:14614148) BHF-UCL PMID:14614148 MGI:3583527 NCBI chrNW_004624746:988,114...1,035,697
Ensembl chrNW_004624746:988,512...1,017,652 		JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dact1 dishevelled binding antagonist of beta catenin 1 involved_in ISO (PMID:20145239)
(MGI:4457465|PMID:20145239)