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Pathways

ONTOLOGY REPORT - ANNOTATIONS


Term:embryo development
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Accession:GO:0009790 term browser browse the term
Definition:The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
Synonyms:exact_synonym: embryogenesis;   embryonal development
 broad_synonym: embryogenesis and morphogenesis
 alt_id: GO:0009795
 xref: Reactome:R-HSA-5619507 "Activation of HOX genes during differentiation";   Wikipedia:Embryogenesis


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anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor alpha involved_in ISO (PMID:17286298) BHF-UCL PMID:17286298 NCBI chrNW_004624817:4,830,164...4,850,565
Ensembl chrNW_004624817:4,820,163...4,851,339
JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21515572) MGI PMID:21515572 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358
JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1 like acts_upstream_of_or_within ISO (PMID:26787558) MGI PMID:26787558 NCBI chrNW_004624747:9,687,369...9,837,344
Ensembl chrNW_004624747:9,705,081...9,837,535
JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chrNW_004624908:2,213,661...2,305,877
Ensembl chrNW_004624908:2,230,581...2,308,579
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:8622765) MGI PMID:8622765 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO (PMID:9790191) MGI PMID:9790191 NCBI chrNW_004624730:74,547,226...74,550,526 JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624750:28,224,289...28,359,473 JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050
JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:28839193) UniProt PMID:28839193 NCBI chrNW_004624822:577,840...626,126
Ensembl chrNW_004624822:565,559...624,710
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:9207801) UniProt PMID:9207801 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451
JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (PMID:14668413) MGI PMID:14668413 NCBI chrNW_004624749:17,804,630...17,956,504
Ensembl chrNW_004624749:17,803,772...17,829,805
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:15967824) MGI PMID:15967824 NCBI chrNW_004624832:5,050,222...5,068,565
Ensembl chrNW_004624832:5,050,222...5,055,506
JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within ISO (PMID:15967824) MGI PMID:15967824 NCBI chrNW_004624749:1,033,824...1,130,099
Ensembl chrNW_004624749:1,091,096...1,125,341
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16245338) MGI PMID:16245338 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531
JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chrNW_004624740:30,912,841...30,933,882
Ensembl chrNW_004624740:30,911,598...30,934,025
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004624735:12,997,358...13,018,765
Ensembl chrNW_004624735:12,997,408...13,018,533
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004624830:268,764...334,660 JBrowse link
G Slitrk6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:19936227) MGI PMID:19936227 NCBI chrNW_004624779:7,030,017...7,036,581
Ensembl chrNW_004624779:7,030,395...7,036,108
JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624766:9,097,466...9,153,602
Ensembl chrNW_004624766:9,105,990...9,153,663
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO (PMID:24302887) MGI PMID:24302887 NCBI chrNW_004624762:9,901,021...10,303,217
Ensembl chrNW_004624762:9,970,904...10,303,046
JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd24 ankyrin repeat domain 24 involved_in ISO (PMID:35175278) UniProt PMID:35175278 NCBI chrNW_004624828:5,410,032...5,441,824 JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:11875276) MGI PMID:11875276 NCBI chrNW_004624731:4,836,109...5,190,990
Ensembl chrNW_004624731:5,029,421...5,190,996
JBrowse link
G Cdh23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:15537665)
(PMID:11138008), (PMID:17050716), (PMID:23217710)
(PMID:12121736)
(PMID:11322776)
(PMID:7610888), (PMID:8790740), (PMID:9039475)
MGI PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... NCBI chrNW_004624754:5,356,006...5,725,774
Ensembl chrNW_004624754:5,393,733...5,724,876
JBrowse link
G Clic5 chloride intracellular channel 5 acts_upstream_of_or_within ISO (PMID:17021174) MGI PMID:17021174 NCBI chrNW_004624754:14,335,173...14,433,721
Ensembl chrNW_004624754:14,370,425...14,434,269
JBrowse link
G Clrn1 clarin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:28,373,111...28,412,282
Ensembl chrNW_004624730:28,373,120...28,412,282
JBrowse link
G Clrn2 clarin 2 involved_in ISO (PMID:33496845) UniProt PMID:33496845 NCBI chrNW_004624755:14,319,151...14,330,329
Ensembl chrNW_004624755:14,317,093...14,329,604
JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within ISO (PMID:35235570) MGI PMID:35235570 NCBI chrNW_004624761:23,876,226...24,039,591
Ensembl chrNW_004624761:23,876,301...24,039,603
JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624774:5,344,696...5,367,009
Ensembl chrNW_004624774:5,344,696...5,367,009
JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within ISO (PMID:17876667), (PMID:23217710)
(PMID:15905332)
MGI PMID:15905332 PMID:17876667 PMID:23217710 NCBI chrNW_004624754:21,744,784...21,763,161
Ensembl chrNW_004624754:21,749,312...21,762,896
JBrowse link
G Myo3a myosin IIIA involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624796:2,774,153...2,983,853 JBrowse link
G Myo3b myosin IIIB involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chrNW_004624787:7,723,491...7,915,619
Ensembl chrNW_004624787:7,685,741...8,130,810
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO (PMID:11753415)
(PMID:12121736)
(PMID:17050716)
MGI PMID:11753415 PMID:12121736 PMID:17050716 NCBI chrNW_004624863:205,468...283,840
Ensembl chrNW_004624863:205,478...283,839
JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 acts_upstream_of_or_within ISO (PMID:24920589) MGI PMID:24920589 NCBI chrNW_004624801:4,612,890...4,630,454
Ensembl chrNW_004624801:4,612,849...4,630,451
JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO (PMID:10978835)
(PMID:11124469)
(PMID:16887306)
(PMID:23217710)
(PMID:15537665)
MGI PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 NCBI chrNW_004624791:9,042,311...9,992,341
Ensembl chrNW_004624791:9,195,902...9,990,131
JBrowse link
G Pdzd7 PDZ domain containing 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:24334608) MGI
TreeGrafter
PMID:24334608 GO_REF:0000118 NCBI chrNW_004624831:608,270...624,679
Ensembl chrNW_004624831:608,970...624,617
JBrowse link
G Pls1 plastin 1 involved_in ISO (PMID:25124451) UniProt PMID:25124451 NCBI chrNW_004624730:19,164,360...19,302,369
Ensembl chrNW_004624730:19,163,783...19,302,222
JBrowse link
G Rest RE1 silencing transcription factor involved_in ISO (PMID:29961578) UniProt PMID:29961578 NCBI chrNW_004624761:12,464,243...12,495,294 JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624756:2,133,261...2,260,133
Ensembl chrNW_004624756:2,133,339...2,247,643
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004624735:12,997,358...13,018,765
Ensembl chrNW_004624735:12,997,408...13,018,533
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004624830:268,764...334,660 JBrowse link
G Sod1 superoxide dismutase 1 acts_upstream_of_or_within ISO (PMID:10464373), (PMID:10466888) MGI PMID:10464373 PMID:10466888 NCBI chrNW_004624745:20,032,003...20,037,958
Ensembl chrNW_004624745:20,032,011...20,037,958
JBrowse link
G Strc stereocilin acts_upstream_of_or_within
involved_in
ISO (PMID:18849963)
(PMID:30801007)
(PMID:21165971)
MGI
UniProt
PMID:18849963 PMID:21165971 PMID:30801007 NCBI chrNW_004624838:2,894,945...2,913,030
Ensembl chrNW_004624838:2,896,147...2,910,268
JBrowse link
G Tecta tectorin alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624880:4,040,402...4,122,377
Ensembl chrNW_004624880:4,041,020...4,122,377
JBrowse link
G Tprn taperin acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:30380417) MGI
TreeGrafter
PMID:30380417 GO_REF:0000118 NCBI chrNW_004624760:750,833...758,329
Ensembl chrNW_004624760:750,871...758,433
JBrowse link
G Triobp TRIO and F-actin binding protein acts_upstream_of_or_within ISO (PMID:20510926) MGI PMID:20510926 NCBI chrNW_004624752:10,130,857...10,186,242 JBrowse link
G Whrn whirlin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:27117407) TreeGrafter
MGI
PMID:27117407 GO_REF:0000118 NCBI chrNW_004624760:20,700,632...20,788,628
Ensembl chrNW_004624760:20,700,593...20,788,628
JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624913:1,139,165...1,195,477
Ensembl chrNW_004624913:1,139,165...1,195,230
JBrowse link
G Epha2 EPH receptor A2 acts_upstream_of_or_within ISO (PMID:11287184) MGI PMID:11287184 NCBI chrNW_004624764:2,265,114...2,296,032
Ensembl chrNW_004624764:2,264,945...2,296,197
JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:14511481) MGI PMID:14511481 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20630950) MGI PMID:20630950 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458
JBrowse link
blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1b1 ATPase Na+/K+ transporting subunit beta 1 acts_upstream_of_or_within ISO MGI MGI:1888635 NCBI chrNW_004624826:7,058,046...7,076,919
Ensembl chrNW_004624826:7,054,371...7,076,919
JBrowse link
G Bnip2 BCL2 interacting protein 2 acts_upstream_of_or_within ISO (PMID:19117032) MGI PMID:19117032 NCBI chrNW_004624781:12,468,675...12,497,130
Ensembl chrNW_004624781:12,468,711...12,488,360
JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within ISO (PMID:15788452) MGI PMID:15788452 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845
JBrowse link
G Dad1 defender against cell death 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624825:9,062,984...9,081,939
Ensembl chrNW_004624825:9,045,163...9,082,634
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 acts_upstream_of_or_within ISO (PMID:15452149) MGI PMID:15452149 NCBI chrNW_004624737:24,135,083...24,164,935 JBrowse link
G Elf3 E74 like ETS transcription factor 3 acts_upstream_of_or_within ISO (PMID:16630543) MGI PMID:16630543 NCBI chrNW_004624807:8,719,835...8,725,911 JBrowse link
G Emg1 EMG1 N1-specific pseudouridine methyltransferase acts_upstream_of_or_within ISO (PMID:20858271) MGI PMID:20858271 NCBI chrNW_004624860:3,605,114...3,611,108
Ensembl chrNW_004624860:3,605,126...3,611,108
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO (PMID:15788452) MGI PMID:15788452 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321
JBrowse link
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (PMID:16630543) MGI PMID:16630543 NCBI chrNW_004624794:7,985,662...7,989,063
Ensembl chrNW_004624794:7,984,884...7,988,296
JBrowse link
G G2e3 G2/M-phase specific E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:18511420) MGI PMID:18511420 NCBI chrNW_004624820:1,717,602...1,775,175
Ensembl chrNW_004624820:1,715,455...1,774,525
JBrowse link
G Gdf9 growth differentiation factor 9 involved_in ISO (PMID:24313324) AgBase PMID:24313324 NCBI chrNW_004624733:39,235,128...39,240,557
Ensembl chrNW_004624733:39,237,296...39,240,206
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 involved_in ISO (PMID:11802795) BHF-UCL PMID:11802795 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO (PMID:16880268) MGI PMID:16880268 NCBI chrNW_004624747:12,717,713...12,746,040
Ensembl chrNW_004624747:12,717,707...12,746,724
JBrowse link
G Hormad1 HORMA domain containing 1 involved_in ISO (PMID:21079677) UniProt PMID:21079677 NCBI chrNW_004624772:18,379,154...18,403,456
Ensembl chrNW_004624772:18,379,745...18,403,745
JBrowse link
G Kpna7 karyopherin subunit alpha 7 acts_upstream_of_or_within ISO (PMID:20699224) MGI PMID:20699224 NCBI chrNW_004624740:32,645,262...32,771,840
Ensembl chrNW_004624740:32,648,640...32,671,427
JBrowse link
G Med21 mediator complex subunit 21 acts_upstream_of_or_within ISO (PMID:10500093) MGI PMID:10500093 NCBI chrNW_004624752:12,168,004...12,173,980
Ensembl chrNW_004624752:12,168,004...12,174,058
JBrowse link
G N4bp2l2 NEDD4 binding protein 2 like 2 acts_upstream_of_or_within ISO (PMID:18360097) MGI PMID:18360097 NCBI chrNW_004624776:5,295,054...5,467,454 JBrowse link
G Nek2 NIMA related kinase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624771:17,334,782...17,351,609
Ensembl chrNW_004624771:17,334,681...17,352,259
JBrowse link
G Npm2 nucleophosmin/nucleoplasmin 2 involved_in ISO (PMID:12714744) UniProt PMID:12714744 NCBI chrNW_004624758:17,619,202...17,630,684
Ensembl chrNW_004624758:17,618,821...17,630,737
JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:21258368) BHF-UCL PMID:21258368 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma acts_upstream_of_or_within ISO (PMID:12606345) MGI PMID:12606345 NCBI chrNW_004624747:21,191,165...21,212,521
Ensembl chrNW_004624747:21,191,150...21,213,544
JBrowse link
G Psmc3 proteasome 26S subunit, ATPase 3 acts_upstream_of_or_within ISO (PMID:10945464) MGI PMID:10945464 NCBI chrNW_004624767:1,361,970...1,367,282
Ensembl chrNW_004624767:1,362,132...1,372,083
JBrowse link
G Psmc4 proteasome 26S subunit, ATPase 4 acts_upstream_of_or_within ISO (PMID:10945464) MGI PMID:10945464 NCBI chrNW_004624925:119,837...127,678
Ensembl chrNW_004624925:119,777...130,723
JBrowse link
G Rpl13 ribosomal protein L13 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:339,103...341,900
Ensembl chrNW_004624746:339,103...341,828
JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624865:4,984,353...4,990,187
Ensembl chrNW_004624865:4,985,620...4,990,120
JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 acts_upstream_of_or_within ISO (PMID:11313485)
(PMID:11263494)
MGI PMID:11263494 PMID:11313485 NCBI chrNW_004624747:10,362,149...10,396,580
Ensembl chrNW_004624747:10,361,260...10,396,719
JBrowse link
G Specc1 sperm antigen with calponin homology and coiled-coil domains 1 acts_upstream_of_or_within ISO (PMID:34166821) MGI PMID:34166821 NCBI chrNW_004624877:4,499,581...4,886,580 JBrowse link
G Spic Spi-C transcription factor acts_upstream_of_or_within ISO (PMID:16630543) MGI PMID:16630543 NCBI chrNW_004624750:6,476,108...6,490,261 JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:9921650) MGI PMID:9921650 NCBI chrNW_004624825:1,773,158...1,899,120
Ensembl chrNW_004624825:1,839,178...1,899,156
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (PMID:9921650) MGI PMID:9921650 NCBI chrNW_004624742:5,871,155...6,080,773 JBrowse link
G Thoc2 THO complex 2 acts_upstream_of_or_within ISO (PMID:24315442) MGI PMID:24315442 NCBI chrNW_004624797:2,299,694...2,411,269 JBrowse link
G Thoc5 THO complex subunit 5 acts_upstream_of_or_within ISO (PMID:24315442) MGI PMID:24315442 NCBI chrNW_004624747:5,840,862...5,874,350
Ensembl chrNW_004624747:5,840,862...5,874,334
JBrowse link
G Xab2 XPA binding protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:704,400...711,963
Ensembl chrNW_004624828:704,300...712,251
JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of ISO (PMID:26902285) MGI PMID:26902285 NCBI chrNW_004624878:621,214...776,363 JBrowse link
blastocyst formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin like 6A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:57,305,105...57,337,653
Ensembl chrNW_004624730:57,305,053...57,337,797
JBrowse link
G Bysl bystin like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:17,195,248...17,204,827
Ensembl chrNW_004624754:17,195,251...17,205,198
JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624825:4,842,246...4,860,758
Ensembl chrNW_004624825:4,853,388...4,860,217
JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme involved_in ISO (PMID:26416966) CACAO PMID:26416966 NCBI chrNW_004624768:17,372,754...17,387,732
Ensembl chrNW_004624768:17,371,628...17,387,881
JBrowse link
G Gabpa GA binding protein transcription factor subunit alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624745:13,787,352...13,820,781
Ensembl chrNW_004624745:13,788,288...13,821,599
JBrowse link
G Kdm4c lysine demethylase 4C acts_upstream_of_or_within ISO (PMID:19696013) MGI PMID:19696013 NCBI chrNW_004624736:11,254,125...11,711,498
Ensembl chrNW_004624736:11,382,598...11,711,536
JBrowse link
G Matr3 matrin 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624743:32,086,821...32,147,079
Ensembl chrNW_004624743:32,115,544...32,146,921
JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO (PMID:16083859) MGI PMID:16083859 NCBI chrNW_004624818:1,041,371...1,065,061
Ensembl chrNW_004624818:1,041,369...1,065,023
JBrowse link
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624752:10,394,025...10,411,265
Ensembl chrNW_004624752:10,394,008...10,412,412
JBrowse link
G Mxi1 MAX interactor 1, dimerization protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624737:35,956,443...36,034,678
Ensembl chrNW_004624737:35,955,726...36,034,695
JBrowse link
G Nop2 NOP2 nucleolar protein acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624860:3,273,944...3,284,150 JBrowse link
G Pbrm1 polybromo 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624822:4,529,350...4,666,714
Ensembl chrNW_004624822:4,529,007...4,663,165
JBrowse link
G Pnldc1 PARN like ribonuclease domain containing exonuclease 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624855:3,088,457...3,111,711
Ensembl chrNW_004624855:3,087,365...3,112,123
JBrowse link
G Prickle2 prickle planar cell polarity protein 2 involved_in ISO (PMID:22333836) UniProt PMID:22333836 NCBI chrNW_004624888:1,537,080...1,825,955
Ensembl chrNW_004624888:1,537,138...1,821,215
JBrowse link
G Ptpn18 protein tyrosine phosphatase non-receptor type 18 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624732:14,495,732...14,545,775 JBrowse link
G Rpl7l1 ribosomal protein L7 like 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:16,568,739...16,573,790
Ensembl chrNW_004624754:16,564,316...16,573,900
JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chrNW_004624752:6,229,962...6,236,699
Ensembl chrNW_004624752:6,230,009...6,235,373
JBrowse link
G Rtn4 reticulon 4 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624833:6,514,409...6,584,061 JBrowse link
G Sf3b1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chrNW_004624889:2,796,351...2,835,592 JBrowse link
G Sf3b6 splicing factor 3b subunit 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624738:6,395,610...6,404,794
Ensembl chrNW_004624738:6,395,616...6,404,855
JBrowse link
G Skil SKI like proto-oncogene acts_upstream_of_or_within ISO (PMID:10811619) MGI PMID:10811619 NCBI chrNW_004624730:48,376,625...48,404,059
Ensembl chrNW_004624730:48,377,499...48,404,141
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624786:1,226,131...1,271,872
Ensembl chrNW_004624786:1,238,082...1,271,875
JBrowse link
G Tead4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO (PMID:18804437) MGI PMID:18804437 NCBI chrNW_004624860:314,404...368,212
Ensembl chrNW_004624860:297,601...368,274
JBrowse link
G Tjp1 tight junction protein 1 acts_upstream_of_or_within ISO (PMID:18423437) MGI PMID:18423437 NCBI chrNW_004624768:2,826,848...3,034,195
Ensembl chrNW_004624768:2,828,324...3,034,302
JBrowse link
G Tm4sf1 transmembrane 4 L six family member 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624730:26,643,632...26,652,858
Ensembl chrNW_004624730:26,642,794...26,652,963
JBrowse link
G Uspl1 ubiquitin specific peptidase like 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624776:7,662,591...7,698,811
Ensembl chrNW_004624776:7,658,267...7,696,393
JBrowse link
G Wdr74 WD repeat domain 74 acts_upstream_of_or_within ISO (PMID:21799883), (PMID:27869233) MGI PMID:21799883 PMID:27869233 NCBI chrNW_004624926:1,287,012...1,291,887
Ensembl chrNW_004624926:1,287,012...1,301,658
JBrowse link
G Zp3 zona pellucida glycoprotein 3 involved_in ISO (PMID:20382503) UniProt PMID:20382503 NCBI chrNW_004624740:15,037,818...15,044,207
Ensembl chrNW_004624740:15,037,943...15,044,193
JBrowse link
blastocyst growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 component of Paf1/RNA polymerase II complex acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:2,823,561...2,851,742
Ensembl chrNW_004624766:2,823,229...2,851,742
JBrowse link
G Ints1 integrator complex subunit 1 acts_upstream_of_or_within ISO (PMID:17544522) MGI PMID:17544522 NCBI chrNW_004624740:26,952,076...26,983,595
Ensembl chrNW_004624740:26,956,688...26,983,394
JBrowse link
G Nbn nibrin involved_in ISO (PMID:14612522) UniProt PMID:14612522 NCBI chrNW_004624744:2,013,936...2,061,726
Ensembl chrNW_004624744:2,013,922...2,061,708
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:24036311) MGI PMID:24036311 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
G Rad51b RAD51 paralog B acts_upstream_of_or_within ISO (PMID:10567591) MGI PMID:10567591 NCBI chrNW_004624734:32,560,579...33,173,357 JBrowse link
G Rln2 relaxin 2 involved_in ISO (PMID:21272344) CACAO PMID:21272344 NCBI chrNW_004624736:9,886,285...9,891,887
Ensembl chrNW_004624736:9,886,148...9,891,191
JBrowse link
G Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (PMID:24036311) MGI PMID:24036311 NCBI chrNW_004624804:8,588,751...8,649,180 JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:11163203) MGI PMID:11163203 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968
JBrowse link
G Ubtfl1 upstream binding transcription factor like 1 acts_upstream_of_or_within ISO (PMID:19915186) MGI PMID:19915186 NCBI chrNW_004624845:326,830...328,587
Ensembl chrNW_004624845:327,418...328,587
JBrowse link
G Znf830 zinc finger protein 830 acts_upstream_of_or_within ISO (PMID:15988037) MGI PMID:15988037 NCBI chrNW_004624875:2,853,426...2,854,925
Ensembl chrNW_004624875:2,853,472...2,854,572
JBrowse link
blastocyst hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap3 A-kinase anchoring protein 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624860:1,684,474...1,701,307
Ensembl chrNW_004624860:1,684,433...1,701,736
JBrowse link
G Arhgdig Rho GDP dissociation inhibitor gamma acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624913:1,133,381...1,135,386
Ensembl chrNW_004624913:1,133,421...1,135,403
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624901:1,342,855...1,354,196
Ensembl chrNW_004624901:1,342,765...1,354,165
JBrowse link
G Bcor BCL6 corepressor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:15,338,331...15,465,683
Ensembl chrNW_004624762:15,420,596...15,465,873
JBrowse link
G Ccdc24 coiled-coil domain containing 24 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624892:3,270,816...3,275,074
Ensembl chrNW_004624892:3,271,149...3,274,730
JBrowse link
G Ccdc62 coiled-coil domain containing 62 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624747:22,839,359...22,871,145
Ensembl chrNW_004624747:22,842,925...22,871,392
JBrowse link
G Cmtm3 CKLF like MARVEL transmembrane domain containing 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624746:19,830,839...19,840,350
Ensembl chrNW_004624746:19,830,839...19,839,430
JBrowse link
G Coprs coordinator of PRMT5 and differentiation stimulator acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624875:4,345,593...4,352,097
Ensembl chrNW_004624875:4,345,599...4,352,081
JBrowse link
G Ctr9 CTR9 component of Paf1/RNA polymerase II complex acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:2,823,561...2,851,742
Ensembl chrNW_004624766:2,823,229...2,851,742
JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO (PMID:15901638) MGI PMID:15901638 NCBI chrNW_004624795:704,066...708,721
Ensembl chrNW_004624795:704,252...707,165
JBrowse link
G Hcfc1 host cell factor C1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624946:571,776...591,543
Ensembl chrNW_004624946:571,774...590,247
JBrowse link
G Hs3st6 heparan sulfate-glucosamine 3-sulfotransferase 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624913:323,778...330,347
Ensembl chrNW_004624913:323,854...331,489
JBrowse link
G LOC101705495 solute carrier family 35 member E2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624818:8,032,088...8,050,523
Ensembl chrNW_004624818:8,038,653...8,046,467
JBrowse link
G Lpar6 lysophosphatidic acid receptor 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624748:6,423,170...6,425,149
Ensembl chrNW_004624748:6,423,861...6,424,892
JBrowse link
G Ndufa2 NADH:ubiquinone oxidoreductase subunit A2 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624743:33,398,027...33,400,346
Ensembl chrNW_004624743:33,398,027...33,400,271
JBrowse link
G Necab1 N-terminal EF-hand calcium binding protein 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624744:1,021,362...1,211,739
Ensembl chrNW_004624744:1,021,089...1,211,694
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624849:3,818,115...3,907,250
Ensembl chrNW_004624849:3,817,915...3,908,888
JBrowse link
G Phf6 PHD finger protein 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624797:14,081,381...14,140,180
Ensembl chrNW_004624797:14,081,302...14,128,487
JBrowse link
G Plpp4 phospholipid phosphatase 4 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624737:26,178,727...26,304,053
Ensembl chrNW_004624737:26,178,572...26,303,999
JBrowse link
G Ppp4r4 protein phosphatase 4 regulatory subunit 4 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624734:10,522,300...10,623,887
Ensembl chrNW_004624734:10,522,298...10,620,543
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease acts_upstream_of_or_within ISO (PMID:15831459) MGI PMID:15831459 NCBI chrNW_004624770:9,026,592...9,100,818
Ensembl chrNW_004624770:9,023,392...9,119,183
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:11163203) MGI PMID:11163203 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968
JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 acts_upstream_of_or_within ISO (PMID:11313485)
(PMID:11263494)
MGI PMID:11263494 PMID:11313485 NCBI chrNW_004624747:10,362,149...10,396,580
Ensembl chrNW_004624747:10,361,260...10,396,719
JBrowse link
G Smim14 small integral membrane protein 14 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624870:4,677,845...4,749,609
Ensembl chrNW_004624870:4,677,906...4,746,424
JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624796:10,383,947...10,577,117
Ensembl chrNW_004624796:10,458,466...10,570,959
JBrowse link
G Stmn3 stathmin 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624741:29,292,321...29,299,623
Ensembl chrNW_004624741:29,292,076...29,299,621
JBrowse link
G Suds3 SIN3A corepressor complex component SDS3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624747:15,104,630...15,138,809 JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624893:499,222...512,341
Ensembl chrNW_004624893:498,973...512,443
JBrowse link
G Tbl1xr1 TBL1X/Y related 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624730:54,835,624...55,013,474
Ensembl chrNW_004624730:54,835,624...54,884,835
JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624895:3,544,410...3,553,981 JBrowse link
G Zbed6 zinc finger BED-type containing 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624807:7,158,405...7,165,500 JBrowse link
G Zfp14 ZFP14 zinc finger protein acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004624794:10,717,241...10,796,502 JBrowse link
branching involved in labyrinthine layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adm adrenomedullin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:2,402,152...2,404,343
Ensembl chrNW_004624766:2,401,769...2,404,446
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:9435295) MGI PMID:9435295 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO (PMID:23610556) MGI PMID:23610556 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050
JBrowse link
G Gcm1 glial cells missing transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624850:405,001...421,208
Ensembl chrNW_004624850:406,840...421,128
JBrowse link
G Grb2 growth factor receptor bound protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:5,143,239...5,219,136
Ensembl chrNW_004624801:5,143,141...5,219,244
JBrowse link
G Il10 interleukin 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624807:4,687,249...4,691,658
Ensembl chrNW_004624807:4,687,176...4,691,732
JBrowse link
G Llgl2 LLGL scribble cell polarity complex component 2 acts_upstream_of_or_within ISO (PMID:21606200) MGI PMID:21606200 NCBI chrNW_004624801:5,329,988...5,376,368
Ensembl chrNW_004624801:5,329,916...5,370,345
JBrowse link
G Rspo3 R-spondin 3 acts_upstream_of_or_within ISO (PMID:16963017) MGI PMID:16963017 NCBI chrNW_004624753:1,520,337...1,600,054
Ensembl chrNW_004624753:1,520,210...1,600,432
JBrowse link
G Socs3 suppressor of cytokine signaling 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:7,841,230...7,843,912
Ensembl chrNW_004624801:7,840,889...7,843,860
JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within ISO (PMID:17174946) MGI PMID:17174946 NCBI chrNW_004624804:8,092,700...8,105,478
Ensembl chrNW_004624804:8,093,346...8,106,193
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:30236446) MGI PMID:30236446 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955
JBrowse link
cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in ISO (PMID:10716450) UniProt PMID:10716450 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321
JBrowse link
G Gcm1 glial cells missing transcription factor 1 involved_in
acts_upstream_of_or_within
IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624850:405,001...421,208
Ensembl chrNW_004624850:406,840...421,128
JBrowse link
G Krt8 keratin 8 acts_upstream_of_or_within ISO (PMID:11062258) MGI PMID:11062258 NCBI chrNW_004624904:970,136...978,211 JBrowse link
G Stk3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19786569) UniProt
MGI
PMID:19786569 GO_REF:0000117 NCBI chrNW_004624763:5,568,079...5,886,722
Ensembl chrNW_004624763:5,564,835...5,886,769
JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624790:9,415,172...9,521,103
Ensembl chrNW_004624790:9,415,177...9,521,051
JBrowse link
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
cell migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amot angiomotin acts_upstream_of_or_within ISO (PMID:12676095) MGI PMID:12676095 NCBI chrNW_004624803:2,405,037...2,491,715
Ensembl chrNW_004624803:2,422,274...2,488,097
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (PMID:15004567) MGI PMID:15004567 NCBI chrNW_004624736:18,958,081...18,960,617
Ensembl chrNW_004624736:18,958,069...18,960,617
JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15142971) MGI
UniProt
PMID:15142971 GO_REF:0000117 NCBI chrNW_004624767:18,438,165...18,551,362
Ensembl chrNW_004624767:18,438,274...18,551,338
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15142971) MGI
UniProt
PMID:15142971 GO_REF:0000117 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISO (PMID:23063620) UniProt PMID:23063620 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091
JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within ISO (PMID:17151016) MGI PMID:17151016 NCBI chrNW_004624807:322,723...325,089
Ensembl chrNW_004624807:322,723...326,149
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:15004567) MGI PMID:15004567 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO (PMID:21069829) MGI PMID:21069829 NCBI chrNW_004624766:22,234,484...22,240,874
Ensembl chrNW_004624766:22,234,484...22,240,940
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:21146513) MGI PMID:21146513 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:10421635) MGI PMID:10421635 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741
JBrowse link
cell-cell adhesion involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO (PMID:21069829) MGI PMID:21069829 NCBI chrNW_004624766:22,234,484...22,240,874
Ensembl chrNW_004624766:22,234,484...22,240,940
JBrowse link
chordate embryonic development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1 DNA repair associated acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9171368) MGI
TreeGrafter
PMID:9171368 GO_REF:0000118 NCBI chrNW_004624795:1,186,043...1,238,986
Ensembl chrNW_004624795:1,188,136...1,241,964
JBrowse link
G Brca2 BRCA2 DNA repair associated acts_upstream_of_or_within ISO (PMID:9171368) MGI PMID:9171368 NCBI chrNW_004624776:5,497,552...5,573,465
Ensembl chrNW_004624776:5,497,779...5,550,993
JBrowse link
G Casp8 caspase 8 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624899:427,064...450,931
Ensembl chrNW_004624899:424,363...451,087
JBrowse link
G Cenpu centromere protein U acts_upstream_of_or_within ISO (PMID:23724000) MGI PMID:23724000 NCBI chrNW_004624769:15,450,423...15,491,393 JBrowse link
G Fas Fas cell surface death receptor ISO RGD PMID:11331665 RGD:8686426 NCBI chrNW_004624791:15,290,022...15,315,848
Ensembl chrNW_004624791:15,289,348...15,315,848
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769
JBrowse link
G Lims1 LIM zinc finger domain containing 1 acts_upstream_of_or_within ISO (PMID:15798193) MGI PMID:15798193 NCBI chrNW_004624749:11,720,492...11,846,571 JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624872:4,539,965...4,592,004
Ensembl chrNW_004624872:4,539,847...4,594,793
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Trip6 thyroid hormone receptor interactor 6 involved_in ISO (PMID:10826496) UniProt PMID:10826496 NCBI chrNW_004624740:16,292,909...16,297,042
Ensembl chrNW_004624740:16,292,912...16,296,982
JBrowse link
G Vezt vezatin, adherens junctions transmembrane protein acts_upstream_of_or_within ISO (PMID:16199027) MGI PMID:16199027 NCBI chrNW_004624750:11,808,192...11,869,019
Ensembl chrNW_004624750:11,808,192...11,868,985
JBrowse link
chorio-allantoic fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624850:3,324,553...3,481,439
Ensembl chrNW_004624850:3,322,782...3,481,512
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (PMID:10079236) BHF-UCL PMID:10079236 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742
JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:12446788) MGI PMID:12446788 NCBI chrNW_004624742:11,882,815...11,885,686
Ensembl chrNW_004624742:11,882,907...11,885,667
JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO (PMID:10021343) MGI PMID:10021343 NCBI chrNW_004624800:1,174,703...1,234,661
Ensembl chrNW_004624800:1,175,679...1,234,951
JBrowse link
G Erf ETS2 repressor factor acts_upstream_of_or_within ISO (PMID:17502352) MGI PMID:17502352 NCBI chrNW_004624907:499,913...506,719
Ensembl chrNW_004624907:499,883...507,629
JBrowse link
G Itga4 integrin subunit alpha 4 acts_upstream_of_or_within ISO (PMID:7539359) MGI PMID:7539359 NCBI chrNW_004624844:3,264,794...3,353,355
Ensembl chrNW_004624844:3,265,110...3,354,087
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:10090727) MGI PMID:10090727 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389
JBrowse link
G Vcam1 vascular cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:7539357)
(PMID:7530222)
MGI PMID:7530222 PMID:7539357 NCBI chrNW_004624857:3,606,573...3,625,991
Ensembl chrNW_004624857:3,606,431...3,627,063
JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO (PMID:11543617) MGI PMID:11543617 NCBI chrNW_004624752:3,818,073...3,856,602
Ensembl chrNW_004624752:3,818,025...3,857,027
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:32,251,100...32,256,458
Ensembl chrNW_004624734:32,251,114...32,257,211
JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624764:12,203,854...12,306,879
Ensembl chrNW_004624764:12,203,622...12,306,974
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (PMID:18423449) UniProt PMID:18423449 NCBI chrNW_004624846:4,043,010...4,046,660
Ensembl chrNW_004624846:4,044,893...4,046,248
JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO (PMID:18606138) MGI PMID:18606138 NCBI chrNW_004624763:19,917,199...19,925,824
Ensembl chrNW_004624763:19,917,169...19,925,896
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO (PMID:16116426) MGI PMID:16116426 NCBI chrNW_004624818:8,267,111...8,283,755
Ensembl chrNW_004624818:8,267,128...8,278,725
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO (PMID:16116426)
(PMID:19008950)
MGI PMID:16116426 PMID:19008950 NCBI chrNW_004624786:9,843,580...9,851,538
Ensembl chrNW_004624786:9,844,157...9,851,301
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (PMID:19008950) MGI PMID:19008950 NCBI chrNW_004624730:72,396,437...72,412,260
Ensembl chrNW_004624730:72,396,343...72,413,175
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:10072433) MGI PMID:10072433 NCBI chrNW_004624744:19,782,174...19,975,496
Ensembl chrNW_004624744:19,782,790...19,977,335
JBrowse link
G Frzb frizzled related protein acts_upstream_of_or_within ISO (PMID:17433286) MGI PMID:17433286 NCBI chrNW_004624844:4,608,016...4,639,582
Ensembl chrNW_004624844:4,608,016...4,643,141
JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within ISO (PMID:20940229) MGI PMID:20940229 NCBI chrNW_004624795:577,350...584,110
Ensembl chrNW_004624795:578,571...580,235
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:17395647) MGI PMID:17395647 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within ISO (PMID:20643356) MGI PMID:20643356 NCBI chrNW_004624764:8,753,343...8,783,891
Ensembl chrNW_004624764:8,753,567...8,783,162
JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chrNW_004624739:3,509,020...3,511,890
Ensembl chrNW_004624739:3,508,838...3,511,864
JBrowse link
G Hpn hepsin involved_in ISO (PMID:20683358) UniProt PMID:20683358 NCBI chrNW_004624794:8,426,005...8,439,758
Ensembl chrNW_004624794:8,421,791...8,439,782
JBrowse link
G Myo3a myosin IIIA involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624796:2,774,153...2,983,853 JBrowse link
G Myo3b myosin IIIB involved_in ISO (PMID:26754646) UniProt PMID:26754646 NCBI chrNW_004624787:7,723,491...7,915,619
Ensembl chrNW_004624787:7,685,741...8,130,810
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:14,997,533...15,058,971
Ensembl chrNW_004624784:14,997,424...15,059,761
JBrowse link
G Nectin3 nectin cell adhesion molecule 3 involved_in ISO (PMID:21798896) UniProt PMID:21798896 NCBI chrNW_004624731:37,425,966...37,567,938
Ensembl chrNW_004624731:37,433,809...37,568,677
JBrowse link
G Neurog1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,497,872...11,499,957
Ensembl chrNW_004624733:11,498,249...11,498,974
JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within
ISO (PMID:20727173)
(PMID:8951055)
(PMID:16916509)
UniProt
DFLAT
MGI
PMID:8951055 PMID:16916509 PMID:20727173 NCBI chrNW_004624831:375,851...453,968
Ensembl chrNW_004624831:375,866...453,930
JBrowse link
G Pou3f4 POU class 3 homeobox 4 involved_in ISO (PMID:18231833) UniProt PMID:18231833 NCBI chrNW_004624852:5,036,585...5,040,160
Ensembl chrNW_004624852:5,037,373...5,040,139
JBrowse link
G Ptk7 protein tyrosine kinase 7 (inactive) acts_upstream_of_or_within ISO (PMID:20704721) MGI PMID:20704721 NCBI chrNW_004624754:16,386,437...16,441,341
Ensembl chrNW_004624754:16,386,296...16,440,681
JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chrNW_004624740:30,912,841...30,933,882
Ensembl chrNW_004624740:30,911,598...30,934,025
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:20346939) MGI PMID:20346939 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISO (PMID:18231833)
(PMID:17825816)
UniProt
MGI
PMID:17825816 PMID:18231833 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098
JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:18353863) MGI PMID:18353863 NCBI chrNW_004624799:9,694,167...9,721,468
Ensembl chrNW_004624799:9,694,374...9,719,385
JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (PMID:33795231) UniProt PMID:33795231 NCBI chrNW_004624871:2,428,757...2,437,447
Ensembl chrNW_004624871:2,429,407...2,437,447
JBrowse link
G Tifab TIFA inhibitor involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004624733:11,578,934...11,587,250 JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within ISO (PMID:10575115) MGI PMID:10575115 NCBI chrNW_004624734:20,880,438...21,050,756
Ensembl chrNW_004624734:20,882,154...21,050,626
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624794:841,302...867,717
Ensembl chrNW_004624794:841,247...867,708
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:17433286) MGI PMID:17433286 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:21980308) MGI PMID:21980308 NCBI chrNW_004624805:3,964,448...4,044,546
Ensembl chrNW_004624805:3,964,450...4,042,527
JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chrNW_004624730:8,824,370...8,874,614
Ensembl chrNW_004624730:8,816,643...8,874,649
JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO (PMID:16571627) MGI PMID:16571627 NCBI chrNW_004624818:8,267,111...8,283,755
Ensembl chrNW_004624818:8,267,128...8,278,725
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO (PMID:16571627) MGI PMID:16571627 NCBI chrNW_004624786:9,843,580...9,851,538
Ensembl chrNW_004624786:9,844,157...9,851,301
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624794:841,302...867,717
Ensembl chrNW_004624794:841,247...867,708
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508
JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:15218525) MGI PMID:15218525 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Cdk20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (PMID:28817564) MGI PMID:28817564 NCBI chrNW_004624868:4,225,779...4,248,252
Ensembl chrNW_004624868:4,241,976...4,248,196
JBrowse link
G Cplane2 ciliogenesis and planar polarity effector complex subunit 2 acts_upstream_of_or_within ISO (PMID:29038301) MGI PMID:29038301 NCBI chrNW_004624764:2,350,780...2,358,514
Ensembl chrNW_004624764:2,350,780...2,358,495
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO (PMID:18590716)
(PMID:18003640)
MGI PMID:18003640 PMID:18590716 NCBI chrNW_004624908:1,713,590...1,720,709 JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within ISO (PMID:23383217) MGI PMID:23383217 NCBI chrNW_004624955:234,289...239,541
Ensembl chrNW_004624955:231,506...239,508
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:18590716)
(PMID:9226455)
(PMID:23383217)
MGI PMID:9226455 PMID:18590716 PMID:23383217 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504941)
(PMID:17504940), (PMID:17504941)
MGI PMID:17504940 PMID:17504941 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:28817564)
(PMID:20159594)
(PMID:17395647)
(PMID:18590716), (PMID:19286674)
(PMID:9247260)
MGI PMID:9247260 PMID:17395647 PMID:18590716 PMID:19286674 PMID:20159594 More... NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:28817564)
(PMID:17395647)
(PMID:20159594)
MGI PMID:17395647 PMID:20159594 PMID:28817564 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Gorab golgin, RAB6 interacting acts_upstream_of_or_within ISO (PMID:26967474) MGI PMID:26967474 NCBI chrNW_004624826:8,230,545...8,250,519
Ensembl chrNW_004624826:8,230,740...8,250,918
JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO (PMID:9226455) MGI PMID:9226455 NCBI chrNW_004624734:7,367,030...7,369,081
Ensembl chrNW_004624734:7,367,277...7,368,817
JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:22689656) MGI PMID:22689656 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323
JBrowse link
G Kif3a kinesin family member 3A involved_in
acts_upstream_of_or_within
ISO (PMID:21209331)
(PMID:18590716), (PMID:19286674)
BHF-UCL
MGI
PMID:18590716 PMID:19286674 PMID:21209331 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121
JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:21045211) MGI PMID:21045211 NCBI chrNW_004624871:50,688...63,772
Ensembl chrNW_004624871:51,122...63,742
JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004624800:1,426,773...1,431,510
Ensembl chrNW_004624800:1,426,998...1,431,631
JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004624764:3,853,055...3,951,182
Ensembl chrNW_004624764:3,853,055...3,947,521
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO (PMID:22007132) MGI PMID:22007132 NCBI chrNW_004624901:1,319,426...1,336,848
Ensembl chrNW_004624901:1,319,062...1,336,744
JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within ISO (PMID:22007132) MGI PMID:22007132 NCBI chrNW_004624742:13,243,248...13,357,873
Ensembl chrNW_004624742:13,242,593...13,357,986
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743
JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188
JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:9262482) MGI PMID:9262482 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389
JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (PMID:7720556) UniProt PMID:7720556 NCBI chrNW_004624753:18,988,842...19,014,799 JBrowse link
G Rnf220 ring finger protein 220 acts_upstream_of_or_within ISO (PMID:30177510) MGI PMID:30177510 NCBI chrNW_004624906:287,817...544,123
Ensembl chrNW_004624906:313,660...544,123
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
ISO (PMID:21209331)
(PMID:17442700), (PMID:18590716)
(PMID:17504941)
BHF-UCL
MGI
PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:19684112) MGI PMID:19684112 NCBI chrNW_004624831:1,882,114...2,012,341
Ensembl chrNW_004624831:1,882,077...2,012,341
JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004624798:9,444,536...9,609,957
Ensembl chrNW_004624798:9,444,919...9,609,134
JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO (PMID:16357211) MGI PMID:16357211 NCBI chrNW_004624747:21,259,515...21,300,180
Ensembl chrNW_004624747:21,265,197...21,300,149
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:35353806) MGI PMID:35353806 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004624847:3,424,388...3,469,708
Ensembl chrNW_004624847:3,424,365...3,472,075
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674), (PMID:19334287)
(PMID:19223390)
MGI PMID:19223390 PMID:19286674 PMID:19334287 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22689656) MGI PMID:22689656 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:8299937) MGI PMID:8299937 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458
JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO (PMID:10932191) MGI PMID:10932191 NCBI chrNW_004624744:31,103,053...31,302,314
Ensembl chrNW_004624744:31,103,059...31,235,623
JBrowse link
G Gjb6 gap junction protein beta 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624776:17,477,947...17,487,304
Ensembl chrNW_004624776:17,477,966...17,487,303
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:8291537) BHF-UCL PMID:8291537 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295
JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15190012) MGI PMID:15190012 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997
JBrowse link
ectoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033
JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elf5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO (PMID:25446535) MGI PMID:25446535 NCBI chrNW_004624767:12,648,420...12,675,727
Ensembl chrNW_004624767:12,649,643...12,675,711
JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO (PMID:25446535) MGI PMID:25446535 NCBI chrNW_004624745:25,096,587...25,113,953
Ensembl chrNW_004624745:25,096,337...25,110,123
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
embryo development ending in birth or egg hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ace angiotensin I converting enzyme ISO RGD PMID:1784836 RGD:12879818 NCBI chrNW_004624849:998,262...1,019,305
Ensembl chrNW_004624849:998,277...1,019,521
JBrowse link
G Akirin2 akirin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624799:6,620,102...6,644,286
Ensembl chrNW_004624799:6,625,549...6,644,286
JBrowse link
G Camsap3 calmodulin regulated spectrin associated protein family member 3 involved_in ISO (PMID:28860385) UniProt PMID:28860385 NCBI chrNW_004624828:689,010...703,496
Ensembl chrNW_004624828:688,564...704,174
JBrowse link
G Cdk5r1 cyclin dependent kinase 5 regulatory subunit 1 involved_in ISO PMID:11276227 UniProt PMID:11276227 RGD:8554712 NCBI chrNW_004624875:538,752...542,874
Ensembl chrNW_004624875:538,790...543,044
JBrowse link
G Evx1 even-skipped homeobox 1 acts_upstream_of_or_within ISO (PMID:7958869) MGI PMID:7958869 NCBI chrNW_004624739:3,354,191...3,358,961
Ensembl chrNW_004624739:3,355,578...3,358,947
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO RGD PMID:19476451 RGD:2315829 NCBI chrNW_004624777:3,268,674...3,321,424
Ensembl chrNW_004624777:3,268,953...3,321,145
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:14623825) MGI PMID:14623825 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741
JBrowse link
G Fxn frataxin acts_upstream_of_or_within ISO (PMID:10767347) MGI PMID:10767347 NCBI chrNW_004624736:4,027,054...4,047,881
Ensembl chrNW_004624736:4,027,354...4,047,854
JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in ISO (PMID:15919177) UniProt PMID:15919177 NCBI chrNW_004624740:5,606,828...5,617,848
Ensembl chrNW_004624740:5,606,129...5,618,092
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437
JBrowse link
G Rictor RPTOR independent companion of MTOR complex 2 involved_in ISO (PMID:16962829) UniProt PMID:16962829 NCBI chrNW_004624759:15,837,027...15,973,248
Ensembl chrNW_004624759:15,837,064...15,968,894
JBrowse link
G Scel sciellin involved_in ISO (PMID:11112355) UniProt PMID:11112355 NCBI chrNW_004624751:22,710,932...22,808,109
Ensembl chrNW_004624751:22,712,795...22,792,581
JBrowse link
G Sebox SEBOX homeobox acts_upstream_of_or_within ISO (PMID:18753614) MGI PMID:18753614 NCBI chrNW_004624786:967,234...969,884 JBrowse link
G Stox2 storkhead box 2 involved_in ISO (PMID:20643876) UniProt PMID:20643876 NCBI chrNW_004624769:14,517,544...14,785,700
Ensembl chrNW_004624769:14,518,344...14,779,307
JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:16702401) MGI PMID:16702401 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218
JBrowse link
G Tp53bp2 tumor protein p53 binding protein 2 acts_upstream_of_or_within ISO (PMID:16702401) MGI PMID:16702401 NCBI chrNW_004624835:5,744,973...5,790,840
Ensembl chrNW_004624835:5,744,543...5,790,603
JBrowse link
G Ubr3 ubiquitin protein ligase E3 component n-recognin 3 involved_in ISO (PMID:17462990) UniProt PMID:17462990 NCBI chrNW_004624787:7,358,426...7,610,872
Ensembl chrNW_004624787:7,358,441...7,608,483
JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:11118896) MGI PMID:11118896 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843
JBrowse link
G Chrdl1 chordin like 1 involved_in ISO (PMID:11118896), (PMID:11401399) MGI PMID:11118896 PMID:11401399 NCBI chrNW_004624803:5,011,132...5,144,899
Ensembl chrNW_004624803:5,010,746...5,144,989
JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chrNW_004624903:2,596,049...2,601,315 JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chrNW_004624740:3,332,977...3,399,915 JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:12121999) BHF-UCL PMID:12121999 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050
JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004624859:5,510,442...5,572,122
Ensembl chrNW_004624859:5,510,384...5,572,228
JBrowse link
G Wnt1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) BHF-UCL PMID:16826533 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303
JBrowse link
embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (PMID:16647303)
(PMID:16647304)
MGI PMID:16647303 PMID:16647304 NCBI chrNW_004624812:107,632...203,791
Ensembl chrNW_004624812:109,405...203,519
JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in ISO (PMID:19767740), (PMID:21935430), (PMID:23806618) UniProt PMID:19767740 PMID:21935430 PMID:23806618 NCBI chrNW_004624832:4,509,118...4,514,180
Ensembl chrNW_004624832:4,509,505...4,514,183
JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chrNW_004624908:2,213,661...2,305,877
Ensembl chrNW_004624908:2,230,581...2,308,579
JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624771:10,965,170...11,072,462
Ensembl chrNW_004624771:10,967,542...10,968,048
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:19000668) UniProt PMID:19000668 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323
JBrowse link
G Mab21l2 mab-21 like 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:2,074,510...2,077,282
Ensembl chrNW_004624858:2,075,456...2,076,535
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538
JBrowse link
G Ofd1 OFD1 centriole and centriolar satellite protein involved_in ISO (PMID:23806618) UniProt PMID:23806618 NCBI chrNW_004624882:376,447...417,066
Ensembl chrNW_004624882:376,556...416,509
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:15013802) MGI PMID:15013802 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379
JBrowse link
G Znf281 zinc finger protein 281 involved_in ISO (PMID:21915945) UniProt PMID:21915945 NCBI chrNW_004624798:154,949...158,292
Ensembl chrNW_004624798:154,980...158,287
JBrowse link
embryonic brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO RGD PMID:19819228 RGD:11537397 NCBI chrNW_004624886:2,189,753...2,403,174
Ensembl chrNW_004624886:2,189,655...2,397,364
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO (PMID:24947469) MGI PMID:24947469 NCBI chrNW_004624755:16,252,488...16,361,794
Ensembl chrNW_004624755:16,252,582...16,355,053
JBrowse link
G Cdc40 cell division cycle 40 involved_in ISO (PMID:33220177) UniProt PMID:33220177 NCBI chrNW_004624916:1,302,294...1,353,487
Ensembl chrNW_004624916:1,302,420...1,352,986
JBrowse link
G Cdk20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (PMID:28817564) MGI PMID:28817564 NCBI chrNW_004624868:4,225,779...4,248,252
Ensembl chrNW_004624868:4,241,976...4,248,196
JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:32879327) MGI PMID:32879327 NCBI chrNW_004624800:7,182,588...9,280,407
Ensembl chrNW_004624800:7,181,020...9,279,678
JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G En1 engrailed homeobox 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624732:26,333,642...26,338,450
Ensembl chrNW_004624732:26,333,653...26,337,904
JBrowse link
G En2 engrailed homeobox 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624800:2,440,502...2,446,647
Ensembl chrNW_004624800:2,438,900...2,446,680
JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20589884) MGI PMID:20589884 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474
JBrowse link
G Megf8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (PMID:32203821) MGI PMID:32203821 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091
JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid NOT|involved_in ISO (PMID:30074985) ARUK-UCL PMID:30074985 NCBI chrNW_004624764:22,422,520...22,435,332
Ensembl chrNW_004624764:22,422,423...22,435,416
JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:23454480) MGI PMID:23454480 NCBI chrNW_004624871:50,688...63,772
Ensembl chrNW_004624871:51,122...63,742
JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (PMID:25220058) MGI PMID:25220058 NCBI chrNW_004624745:31,402,791...31,516,522
Ensembl chrNW_004624745:31,403,014...31,515,751
JBrowse link
G Phf10 PHD finger protein 10 ISO RGD PMID:24056535 RGD:9588230 NCBI chrNW_004624850:5,633,967...5,652,283
Ensembl chrNW_004624850:5,633,973...5,652,271
JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:20,976,765...20,985,408
Ensembl chrNW_004624754:20,976,515...20,985,393
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994
JBrowse link
G Prickle2 prickle planar cell polarity protein 2 involved_in ISO (PMID:17868671) MGI PMID:17868671 NCBI chrNW_004624888:1,537,080...1,825,955
Ensembl chrNW_004624888:1,537,138...1,821,215
JBrowse link
G Rnf112 ring finger protein 112 involved_in ISO (PMID:26951452) UniProt PMID:26951452 NCBI chrNW_004624849:5,698,937...5,706,316
Ensembl chrNW_004624849:5,699,839...5,706,826
JBrowse link
G Rpl10 ribosomal protein L10 involved_in ISO (PMID:25316788) UniProt PMID:25316788 NCBI chrNW_004624946:860,639...863,636 JBrowse link
G Slc6a8 solute carrier family 6 member 8 ISO RGD PMID:15918910 RGD:1599815 NCBI chrNW_004624946:389,806...396,653 JBrowse link
G Tbc1d23 TBC1 domain family member 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624789:13,685,458...13,749,820
Ensembl chrNW_004624789:13,685,089...13,753,046
JBrowse link
G Tmem94 transmembrane protein 94 acts_upstream_of_or_within ISO (PMID:30526868) MGI PMID:30526868 NCBI chrNW_004624801:5,262,610...5,306,230
Ensembl chrNW_004624801:5,282,318...5,305,525
JBrowse link
G Tra2b transformer 2 beta homolog acts_upstream_of_or_within ISO (PMID:22194695) MGI PMID:22194695 NCBI chrNW_004624730:70,801,227...70,822,188
Ensembl chrNW_004624730:70,801,207...70,822,178
JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (PMID:21548880) MGI PMID:21548880 NCBI chrNW_004624804:9,841,401...10,002,592
Ensembl chrNW_004624804:9,848,512...10,002,693
JBrowse link
G Wnt1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606
JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:17184764) MGI PMID:17184764 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17184764) Ensembl
MGI
PMID:17184764 GO_REF:0000107 NCBI chrNW_004624768:3,851,361...3,885,609
Ensembl chrNW_004624768:3,851,257...3,885,609
JBrowse link
G Cdk20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (PMID:28817564) MGI PMID:28817564 NCBI chrNW_004624868:4,225,779...4,248,252
Ensembl chrNW_004624868:4,241,976...4,248,196
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO (PMID:18791178) MGI PMID:18791178 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050
JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493
JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:10498698)
(PMID:10572050)
MGI PMID:10498698 PMID:10572050 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384
JBrowse link
G Ppp1r13l protein phosphatase 1 regulatory subunit 13 like acts_upstream_of_or_within ISO (PMID:15661756) MGI PMID:15661756 NCBI chrNW_004624907:2,269,341...2,285,909
Ensembl chrNW_004624907:2,269,815...2,286,184
JBrowse link
G Rara retinoic acid receptor alpha acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chrNW_004624795:2,935,432...2,975,226
Ensembl chrNW_004624795:2,934,731...2,967,232
JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chrNW_004624904:1,255,854...1,277,946 JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004624847:3,424,388...3,469,708
Ensembl chrNW_004624847:3,424,365...3,472,075
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004624781:304,890...413,655
Ensembl chrNW_004624781:389,481...413,728
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809
JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:10049573) MGI PMID:10049573 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742
JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:18653562) MGI PMID:18653562 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536
JBrowse link
G Cryaa crystallin alpha A acts_upstream_of_or_within ISO (PMID:18056999) MGI PMID:18056999 NCBI chrNW_004624745:27,636,932...27,639,814
Ensembl chrNW_004624745:27,637,267...27,639,371
JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (PMID:22022403) BHF-UCL PMID:22022403 NCBI chrNW_004624756:23,209,402...23,213,817
Ensembl chrNW_004624756:23,209,390...23,213,802
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:18832390) CACAO PMID:18832390 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (PMID:20579985) DFLAT PMID:20579985 NCBI chrNW_004624772:9,579,488...9,658,881 JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) DFLAT PMID:20579985 NCBI chrNW_004624765:19,912,623...20,105,016
Ensembl chrNW_004624765:19,923,297...20,042,840
JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:28778798) MGI PMID:28778798 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:28778798) MGI PMID:28778798 NCBI chrNW_004624738:9,510,452...9,546,985
Ensembl chrNW_004624738:9,510,512...9,545,933
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769
JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) BHF-UCL PMID:21220025 NCBI chrNW_004624747:21,922,249...22,047,246 JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18985738)
(PMID:19653321)
MGI PMID:18985738 PMID:19653321 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624904:1,475,664...1,507,588 JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624787:11,144,581...11,193,520 JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (PMID:15459098) BHF-UCL PMID:15459098 NCBI chrNW_004624871:2,428,757...2,437,447
Ensembl chrNW_004624871:2,429,407...2,437,447
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:9811866) MGI PMID:9811866 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379
JBrowse link
G Th tyrosine hydroxylase involved_in ISO (PMID:16445854) BHF-UCL PMID:16445854 NCBI chrNW_004624767:15,003,073...15,010,207
Ensembl chrNW_004624767:15,003,092...15,010,154
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:18436818) MGI PMID:18436818 NCBI chrNW_004624805:3,964,448...4,044,546
Ensembl chrNW_004624805:3,964,450...4,042,527
JBrowse link
embryonic cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aatf apoptosis antagonizing transcription factor acts_upstream_of ISO (PMID:11071758) MGI PMID:11071758 NCBI chrNW_004624871:3,966,323...4,078,970
Ensembl chrNW_004624871:3,965,985...4,079,281
JBrowse link
G Cul3 cullin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727
JBrowse link
G Dppa3 developmental pluripotency associated 3 acts_upstream_of_or_within ISO (PMID:15018652) MGI PMID:15018652 NCBI chrNW_004624860:4,974,941...4,978,295 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:9426063) MGI PMID:9426063 NCBI chrNW_004624907:2,249,323...2,263,999
Ensembl chrNW_004624907:2,250,133...2,263,947
JBrowse link
G Gdf9 growth differentiation factor 9 involved_in ISO (PMID:24313324) AgBase PMID:24313324 NCBI chrNW_004624733:39,235,128...39,240,557
Ensembl chrNW_004624733:39,237,296...39,240,206
JBrowse link
G Nr5a2 nuclear receptor subfamily 5 group A member 2 involved_in ISO (PMID:15831456) UniProt PMID:15831456 NCBI chrNW_004624798:356,953...494,877 JBrowse link
G Padi6 peptidyl arginine deiminase 6 involved_in ISO (PMID:16137333) UniProt PMID:16137333 NCBI chrNW_004624764:2,904,874...2,921,186
Ensembl chrNW_004624764:2,904,384...2,921,523
JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta acts_upstream_of_or_within ISO (PMID:11919689) MGI PMID:11919689 NCBI chrNW_004624730:15,226,786...15,399,097
Ensembl chrNW_004624730:15,226,379...15,355,857
JBrowse link
G Rhoa ras homolog family member A involved_in ISO (PMID:25485583) AgBase PMID:25485583 NCBI chrNW_004624730:3,316,122...3,361,820 JBrowse link
G Top1 DNA topoisomerase I acts_upstream_of_or_within ISO (PMID:8943335) MGI PMID:8943335 NCBI chrNW_004624919:1,668,712...1,756,624
Ensembl chrNW_004624919:1,668,440...1,756,629
JBrowse link
G Tpra1 transmembrane protein adipocyte associated 1 acts_upstream_of_or_within ISO (PMID:18459117) MGI PMID:18459117 NCBI chrNW_004624961:505,299...519,071
Ensembl chrNW_004624961:502,736...519,353
JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Cdh11 cadherin 11 acts_upstream_of_or_within ISO (PMID:17143286) MGI PMID:17143286 NCBI chrNW_004624746:21,345,304...21,501,542
Ensembl chrNW_004624746:21,345,310...21,503,822
JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:7590232) MGI PMID:7590232 NCBI chrNW_004624787:9,528,942...9,532,252
Ensembl chrNW_004624787:9,530,034...9,533,109
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:24360810) UniProt PMID:24360810 NCBI chrNW_004624801:9,240,780...9,250,864
Ensembl chrNW_004624801:9,240,780...9,250,863
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (PMID:7874170), (PMID:7987400) BHF-UCL PMID:7874170 PMID:7987400 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9106663) MGI PMID:9106663 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17525797) MGI PMID:17525797 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596
JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO (PMID:15797856) MGI PMID:15797856 NCBI chrNW_004624741:25,138,678...25,197,194
Ensembl chrNW_004624741:25,183,329...25,196,880
JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21377456) MGI PMID:21377456 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358
JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493
JBrowse link
G Irx5 iroquois homeobox 5 involved_in ISO (PMID:22581230) UniProt PMID:22581230 NCBI chrNW_004624757:1,962,574...1,966,330
Ensembl chrNW_004624757:1,947,032...1,966,352
JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO (PMID:18022611) MGI PMID:18022611 NCBI chrNW_004624820:9,667,371...9,677,488
Ensembl chrNW_004624820:9,667,262...9,677,774
JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within ISO (PMID:18022611) MGI PMID:18022611 NCBI chrNW_004624744:3,544,258...3,806,097
Ensembl chrNW_004624744:3,544,552...3,796,821
JBrowse link
G Nipbl NIPBL cohesin loading factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within ISO (PMID:23349049) MGI PMID:23349049 NCBI chrNW_004624930:491,220...660,476
Ensembl chrNW_004624930:491,892...667,530
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624761:15,223,789...15,269,685
Ensembl chrNW_004624761:15,225,356...15,269,810
JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO (PMID:7758948)
(PMID:9729491)
MGI PMID:7758948 PMID:9729491 NCBI chrNW_004624826:8,361,039...8,435,488
Ensembl chrNW_004624826:8,361,033...8,435,656
JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491) MGI PMID:9729491 NCBI chrNW_004624760:5,656,456...5,684,383
Ensembl chrNW_004624760:5,656,521...5,692,934
JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chrNW_004624754:14,601,574...14,868,469
Ensembl chrNW_004624754:14,679,974...14,867,729
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:20133625) MGI PMID:20133625 NCBI chrNW_004624730:74,187,981...74,277,857
Ensembl chrNW_004624730:74,187,995...74,277,200
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671
JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20515681) MGI
UniProt
PMID:20515681 GO_REF:0000117 NCBI chrNW_004624738:26,442,935...26,447,100
Ensembl chrNW_004624738:26,442,965...26,446,942
JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO (PMID:20515681) MGI PMID:20515681 NCBI chrNW_004624734:40,397,276...40,409,951
Ensembl chrNW_004624734:40,397,559...40,409,997
JBrowse link
G Slc39a1 solute carrier family 39 member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624885:3,260,673...3,264,636
Ensembl chrNW_004624885:3,260,681...3,264,959
JBrowse link
G Slc39a3 solute carrier family 39 member 3 acts_upstream_of_or_within ISO (PMID:16652366) MGI PMID:16652366 NCBI chrNW_004624828:5,819,220...5,827,875
Ensembl chrNW_004624828:5,820,306...5,827,846
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371
JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15190012) MGI PMID:15190012 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098
JBrowse link
G Tbx15 T-box transcription factor 15 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624772:14,483,951...14,611,602
Ensembl chrNW_004624772:14,482,948...14,611,452
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within
involved_in
ISO (PMID:8622765)
(PMID:8622766)
MGI
UniProt
PMID:8622765 PMID:8622766 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379
JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:16806156) MGI PMID:16806156 NCBI chrNW_004624825:1,773,158...1,899,120
Ensembl chrNW_004624825:1,839,178...1,899,156
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in ISO (PMID:12975342) BHF-UCL PMID:12975342 NCBI chrNW_004624788:8,447,679...8,535,821
Ensembl chrNW_004624788:8,447,542...8,535,959
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
ISO (PMID:8988167)
(PMID:15030764)
(PMID:8988166), (PMID:8988167)
BHF-UCL
MGI
PMID:8988166 PMID:8988167 PMID:15030764 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809
JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chrNW_004624847:3,730,126...3,774,338
Ensembl chrNW_004624847:3,730,291...3,773,773
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997
JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:16998816)
(PMID:16054034)
MGI PMID:16054034 PMID:16998816 NCBI chrNW_004624849:2,971,658...2,979,864
Ensembl chrNW_004624849:2,957,153...2,976,179
JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:7670465) MGI PMID:7670465 NCBI chrNW_004624790:9,809,550...9,829,199
Ensembl chrNW_004624790:9,809,492...9,829,883
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:16806149) MGI PMID:16806149 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479
JBrowse link
G Cxcl8 C-X-C motif chemokine ligand 8 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004624730:1,744,097...1,747,206
Ensembl chrNW_004624730:1,743,916...1,747,293
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624776:16,022,118...16,055,413
Ensembl chrNW_004624776:16,019,835...16,055,498
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004624756:23,209,402...23,213,817
Ensembl chrNW_004624756:23,209,390...23,213,802
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:10693670) MGI PMID:10693670 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:10693670) MGI PMID:10693670 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (PMID:10523863) MGI PMID:10523863 NCBI chrNW_004624886:2,455,704...2,489,593 JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639) BHF-UCL PMID:18519639 NCBI chrNW_004624811:3,453,218...3,862,970 JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in ISO (PMID:19097194) UniProt PMID:19097194 NCBI chrNW_004624738:23,759,382...23,768,743
Ensembl chrNW_004624738:23,759,398...23,771,639
JBrowse link
G Rarb retinoic acid receptor beta involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chrNW_004624788:2,738,341...3,493,140
Ensembl chrNW_004624788:3,257,697...3,493,132
JBrowse link
G Rarres2 retinoic acid receptor responder 2 involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chrNW_004624800:6,138,236...6,140,922
Ensembl chrNW_004624800:6,139,006...6,140,679
JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (PMID:18280297) UniProt PMID:18280297 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617
JBrowse link
G Sct secretin ISO RGD PMID:1711228 RGD:729899 NCBI chrNW_004624766:21,841,994...21,842,754
Ensembl chrNW_004624766:21,842,014...21,842,683
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004624781:304,890...413,655
Ensembl chrNW_004624781:389,481...413,728
JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643
JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004624754:24,623,059...24,625,647
Ensembl chrNW_004624754:24,623,425...24,625,531
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:21550054)
(PMID:16618415), (PMID:21492869)
MGI PMID:16618415 PMID:21492869 PMID:21550054 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:16127717) MGI PMID:16127717 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16247775) MGI PMID:16247775 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Hlx H2.0 like homeobox acts_upstream_of_or_within ISO (PMID:8557196) MGI PMID:8557196 NCBI chrNW_004624835:4,223,252...4,227,892
Ensembl chrNW_004624835:4,223,511...4,227,979
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:18635606) MGI PMID:18635606 NCBI chrNW_004624871:4,662,104...4,713,125
Ensembl chrNW_004624871:4,661,669...4,712,960
JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISO (PMID:16888283) UniProt PMID:16888283 NCBI chrNW_004624846:2,281,292...2,283,596
Ensembl chrNW_004624846:2,277,961...2,283,571
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:19242925), (PMID:8291537) BHF-UCL PMID:8291537 PMID:19242925 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295
JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (PMID:16423343) MGI PMID:16423343 NCBI chrNW_004624741:18,994,689...19,012,381
Ensembl chrNW_004624741:18,995,246...19,012,910
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISO (PMID:10903171) UniProt PMID:10903171 NCBI chrNW_004624761:15,223,789...15,269,685
Ensembl chrNW_004624761:15,225,356...15,269,810
JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10821773) MGI PMID:10821773 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:16141225) MGI PMID:16141225 NCBI chrNW_004624730:35,826,631...35,836,141
Ensembl chrNW_004624730:35,825,922...35,835,756
JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (PMID:19660448) UniProt PMID:19660448 NCBI chrNW_004624738:26,442,935...26,447,100
Ensembl chrNW_004624738:26,442,965...26,446,942
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (PMID:15254231) UniProt PMID:15254231 NCBI chrNW_004624846:4,043,010...4,046,660
Ensembl chrNW_004624846:4,044,893...4,046,248
JBrowse link
G Tcf21 transcription factor 21 ISO RGD PMID:11804032 RGD:727206 NCBI chrNW_004624942:890,465...893,679
Ensembl chrNW_004624942:890,365...893,811
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624733:38,076,800...38,104,265
Ensembl chrNW_004624733:38,076,410...38,104,173
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624737:33,341,574...33,526,814
Ensembl chrNW_004624737:33,341,029...33,526,928
JBrowse link
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:9272948)
(PMID:9268572)
MGI PMID:9268572 PMID:9272948 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323
JBrowse link
G B9d1 B9 domain containing 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624849:5,635,996...5,644,139
Ensembl chrNW_004624849:5,633,076...5,644,221
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:20043884) MGI PMID:20043884 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397
JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624886:2,983,077...3,005,596
Ensembl chrNW_004624886:2,983,121...3,005,596
JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004624817:2,880,775...3,060,399
Ensembl chrNW_004624817:2,880,976...3,042,004
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (PMID:16079159) MGI PMID:16079159 NCBI chrNW_004624750:4,227,229...4,391,177
Ensembl chrNW_004624750:4,223,561...4,391,218
JBrowse link
G Cplane1 ciliogenesis and planar polarity effector complex subunit 1 acts_upstream_of_or_within ISO (PMID:25877302) MGI PMID:25877302 NCBI chrNW_004624759:17,763,200...17,879,603
Ensembl chrNW_004624759:17,763,585...17,855,954
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in ISO (PMID:9915973) BHF-UCL PMID:9915973 NCBI chrNW_004624764:6,222,301...6,318,423
Ensembl chrNW_004624764:6,221,867...6,318,477
JBrowse link
G Fbxw4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within ISO (PMID:10471509)
(PMID:9733575)
MGI PMID:9733575 PMID:10471509 NCBI chrNW_004624831:1,107,689...1,183,839
Ensembl chrNW_004624831:1,107,689...1,183,958
JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO (PMID:18258918) MGI PMID:18258918 NCBI chrNW_004624771:18,239,437...18,270,408 JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within ISO (PMID:26234751) MGI PMID:26234751 NCBI chrNW_004624920:1,683,342...1,908,602
Ensembl chrNW_004624920:1,683,351...1,904,557
JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:27158779)
(PMID:19877275)
MGI PMID:19877275 PMID:27158779 NCBI chrNW_004624832:4,509,118...4,514,180
Ensembl chrNW_004624832:4,509,505...4,514,183
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940), (PMID:17504941) MGI PMID:17504940 PMID:17504941 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596
JBrowse link
G Gja1 gap junction protein alpha 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624798:9,358,996...9,364,413
Ensembl chrNW_004624798:9,359,004...9,364,313
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:19056373) MGI PMID:19056373 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:22841643)
(PMID:17714700)
(PMID:16254602), (PMID:19036983), (PMID:9268572)
(PMID:9268572)
MGI PMID:9268572 PMID:16254602 PMID:17714700 PMID:19036983 PMID:22841643 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Gna12 G protein subunit alpha 12 acts_upstream_of_or_within ISO (PMID:12077299) MGI PMID:12077299 NCBI chrNW_004624740:30,134,262...30,245,079
Ensembl chrNW_004624740:30,133,435...30,245,079
JBrowse link
G Gnaq G protein subunit alpha q acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624811:5,158,665...5,485,812
Ensembl chrNW_004624811:5,163,793...5,486,140
JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21377456) MGI PMID:21377456 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (PMID:12070084) MGI PMID:12070084 NCBI chrNW_004624769:5,035,669...5,038,333
Ensembl chrNW_004624769:5,033,932...5,038,343
JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO (PMID:21093383) BHF-UCL PMID:21093383 NCBI chrNW_004624764:15,510,655...15,552,020
Ensembl chrNW_004624764:15,510,866...15,552,025
JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO (PMID:21093383) BHF-UCL PMID:21093383 NCBI chrNW_004624856:4,834,197...4,861,546
Ensembl chrNW_004624856:4,834,217...4,861,592
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:12869760) MGI
UniProt
PMID:12869760 GO_REF:0000117 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950
JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:12869760) MGI
UniProt
PMID:12869760 GO_REF:0000117 NCBI chrNW_004624904:2,027,792...2,030,148
Ensembl chrNW_004624904:2,027,993...2,030,148
JBrowse link
G Hoxd12 homeobox D12 acts_upstream_of_or_within ISO (PMID:8900279)
(PMID:17714700)
MGI PMID:8900279 PMID:17714700 NCBI chrNW_004624787:13,240,767...13,241,766
Ensembl chrNW_004624787:13,240,813...13,241,766
JBrowse link
G Hoxd13 homeobox D13 acts_upstream_of_or_within ISO (PMID:9342042)
(PMID:8900279)
(PMID:17714700)
MGI PMID:8900279 PMID:9342042 PMID:17714700 NCBI chrNW_004624787:13,233,932...13,237,210
Ensembl chrNW_004624787:13,233,932...13,238,503
JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323
JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493
JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (PMID:15930098) MGI PMID:15930098 NCBI chrNW_004624790:10,674,002...10,726,292
Ensembl chrNW_004624790:10,678,911...10,726,265
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:15930098)
(PMID:12701101), (PMID:16254602)
(PMID:19036983)
(PMID:15755804), (PMID:15930098)
MGI PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within
involved_in
IEA
ISO
(PMID:17889828) Ensembl
AgBase
PMID:17889828 GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769
JBrowse link
G Intu inturned planar cell polarity protein involved_in
acts_upstream_of_or_within
ISO (PMID:27158779)
(PMID:25774014)
GO_Central
MGI
PMID:25774014 PMID:27158779 NCBI chrNW_004624777:8,585,777...8,674,887
Ensembl chrNW_004624777:8,596,178...8,675,295
JBrowse link
G Lmbr1 limb development membrane protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624800:1,494,183...1,648,978
Ensembl chrNW_004624800:1,494,192...1,648,978
JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within ISO (PMID:9342042) MGI PMID:9342042 NCBI chrNW_004624787:13,049,079...13,127,052
Ensembl chrNW_004624787:13,048,690...13,120,751
JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO (PMID:16517118) MGI PMID:16517118 NCBI chrNW_004624767:1,708,866...1,757,629 JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15142971) MGI
UniProt
PMID:15142971 GO_REF:0000117 NCBI chrNW_004624767:18,438,165...18,551,362
Ensembl chrNW_004624767:18,438,274...18,551,338
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:19795512)
(PMID:15142971)
MGI
UniProt
PMID:15142971 PMID:19795512 GO_REF:0000117 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624787:10,392,738...10,566,563
Ensembl chrNW_004624787:10,405,701...10,565,943
JBrowse link
G Megf8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (PMID:32203821) MGI PMID:32203821 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091
JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:19776033)
(PMID:21045211)
(PMID:23454480)
MGI PMID:19776033 PMID:21045211 PMID:23454480 NCBI chrNW_004624871:50,688...63,772
Ensembl chrNW_004624871:51,122...63,742
JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568
JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chrNW_004624865:780,163...785,776 JBrowse link
G Nog noggin involved_in ISO (PMID:10080184) BHF-UCL PMID:10080184 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:21262216) BHF-UCL PMID:21262216 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994
JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:15755804), (PMID:9636176) MGI PMID:9636176 PMID:15755804 NCBI chrNW_004624753:18,988,842...19,014,799 JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:20660756) MGI PMID:20660756 NCBI chrNW_004624868:479,303...732,723
Ensembl chrNW_004624868:479,290...731,650
JBrowse link
G Sall1 spalt like transcription factor 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO (PMID:17504940), (PMID:17504941)
(PMID:15930098)
(PMID:20660756)
(PMID:11044396)
MGI
Roslin_Institute
PMID:11044396 PMID:15930098 PMID:17504940 PMID:17504941 PMID:20660756 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Smad4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325
JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004624798:9,444,536...9,609,957
Ensembl chrNW_004624798:9,444,919...9,609,134
JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (PMID:15459098) BHF-UCL PMID:15459098 NCBI chrNW_004624871:2,428,757...2,437,447
Ensembl chrNW_004624871:2,429,407...2,437,447
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within
ISO (PMID:27046536)
(PMID:23844108)
(PMID:12116211), (PMID:9207801)
MGI
UniProt
PMID:9207801 PMID:12116211 PMID:23844108 PMID:27046536 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451
JBrowse link
G Tmem107 transmembrane protein 107 involved_in ISO (PMID:22698544) UniProt PMID:22698544 NCBI chrNW_004624786:10,742,842...10,745,381
Ensembl chrNW_004624786:10,741,929...10,745,359
JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within ISO (PMID:22179047) MGI PMID:22179047 NCBI chrNW_004624746:11,411,050...11,427,945
Ensembl chrNW_004624746:11,411,107...11,427,943
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004624847:3,424,388...3,469,708
Ensembl chrNW_004624847:3,424,365...3,472,075
JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (PMID:23141541) MGI PMID:23141541 NCBI chrNW_004624804:9,841,401...10,002,592
Ensembl chrNW_004624804:9,848,512...10,002,693
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674), (PMID:19334287) MGI PMID:19286674 PMID:19334287 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within
ISO (PMID:27158779)
(PMID:24302887)
GO_Central
MGI
PMID:24302887 PMID:27158779 NCBI chrNW_004624762:9,901,021...10,303,217
Ensembl chrNW_004624762:9,970,904...10,303,046
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) BHF-UCL PMID:16826533 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 ISO RGD PMID:19191224 RGD:2312786 NCBI chrNW_004624784:9,545,529...9,726,960
Ensembl chrNW_004624784:9,546,509...9,726,960
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps52 VPS52 subunit of GARP complex acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:23,549,033...23,563,756
Ensembl chrNW_004624754:23,548,998...23,563,931
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ret ret proto-oncogene acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624922:382,462...413,227
Ensembl chrNW_004624922:382,399...413,281
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within ISO (PMID:15569713) MGI PMID:15569713 NCBI chrNW_004624752:72,545...127,321
Ensembl chrNW_004624752:72,615...127,325
JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (PMID:16546160) MGI PMID:16546160 NCBI chrNW_004624764:6,913,027...6,934,650
Ensembl chrNW_004624764:6,921,811...6,933,392
JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:16207763), (PMID:16611695) MGI PMID:16207763 PMID:16611695 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624768:3,851,361...3,885,609
Ensembl chrNW_004624768:3,851,257...3,885,609
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624833:5,654,805...5,722,185
Ensembl chrNW_004624833:5,654,016...5,723,519
JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004624731:11,086,240...11,318,111
Ensembl chrNW_004624731:11,086,844...11,318,102
JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004624774:12,863,446...13,116,929
Ensembl chrNW_004624774:12,863,446...13,116,545
JBrowse link
G Foxl2 forkhead box L2 acts_upstream_of_or_within ISO (PMID:15056605) MGI PMID:15056605 NCBI chrNW_004624730:15,489,261...15,492,645
Ensembl chrNW_004624730:15,490,664...15,491,800
JBrowse link
G Mfap2 microfibril associated protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:2,606,089...2,611,738
Ensembl chrNW_004624764:2,606,138...2,611,732
JBrowse link
G Mfap5 microfibril associated protein 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624860:4,877,811...4,891,149
Ensembl chrNW_004624860:4,881,981...4,888,527
JBrowse link
G Rarb retinoic acid receptor beta acts_upstream_of_or_within ISO (PMID:16207763) MGI PMID:16207763 NCBI chrNW_004624788:2,738,341...3,493,140
Ensembl chrNW_004624788:3,257,697...3,493,132
JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:16207763) MGI PMID:16207763 NCBI chrNW_004624904:1,255,854...1,277,946 JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO (PMID:11830579)
(PMID:10595508)
MGI PMID:10595508 PMID:11830579 NCBI chrNW_004624762:2,480,474...2,508,367
Ensembl chrNW_004624762:2,481,372...2,508,306
JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:10921901) MGI PMID:10921901 NCBI chrNW_004624731:2,557,993...2,600,250
Ensembl chrNW_004624731:2,566,063...2,600,035
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11493558) MGI PMID:11493558 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
G Foxp4 forkhead box P4 acts_upstream_of_or_within ISO (PMID:15361625) MGI PMID:15361625 NCBI chrNW_004624754:17,402,788...17,445,469
Ensembl chrNW_004624754:17,404,125...17,428,736
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933)
(PMID:9136932)
MGI PMID:9136932 PMID:9136933 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:9731532) MGI PMID:9731532 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in
ISO (PMID:19619492)
(PMID:18462699)
(PMID:21305474)
MGI
BHF-UCL
PMID:18462699 PMID:19619492 PMID:21305474 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:15069081), (PMID:20034106) MGI PMID:15069081 PMID:20034106 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479
JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004624772:5,826,823...5,836,853
Ensembl chrNW_004624772:5,826,600...5,836,853
JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323
JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) BHF-UCL PMID:15454078 NCBI chrNW_004624735:10,201,030...10,927,349
Ensembl chrNW_004624735:10,201,526...10,432,896
JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within ISO (PMID:7720575) MGI PMID:7720575 NCBI chrNW_004624885:1,862,911...1,867,656
Ensembl chrNW_004624885:1,862,822...1,867,726
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO (PMID:9362463) MGI PMID:9362463 NCBI chrNW_004624732:26,333,642...26,338,450
Ensembl chrNW_004624732:26,333,653...26,337,904
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950
JBrowse link
G Hoxa13 homeobox A13 acts_upstream_of_or_within ISO (PMID:15733672) MGI PMID:15733672 NCBI chrNW_004624739:3,405,860...3,410,426
Ensembl chrNW_004624739:3,406,436...3,410,851
JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within ISO (PMID:8625797) MGI PMID:8625797 NCBI chrNW_004624739:3,440,328...3,443,362
Ensembl chrNW_004624739:3,439,217...3,443,449
JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within ISO (PMID:8625797) MGI PMID:8625797 NCBI chrNW_004624787:13,263,020...13,265,538
Ensembl chrNW_004624787:13,249,946...13,265,627
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:21209331) BHF-UCL PMID:21209331 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323
JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within ISO (PMID:9342042)
(PMID:22916278)
MGI PMID:9342042 PMID:22916278 NCBI chrNW_004624787:13,049,079...13,127,052
Ensembl chrNW_004624787:13,048,690...13,120,751
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008)
(PMID:19653321)
(PMID:18256198)
(PMID:15880584)
MGI PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chrNW_004624730:47,104,929...47,693,885
Ensembl chrNW_004624730:47,104,319...47,284,839
JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21465616) MGI
UniProt
PMID:21465616 GO_REF:0000117 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:19242925), (PMID:8291537) BHF-UCL PMID:8291537 PMID:19242925 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:21262216) BHF-UCL PMID:21262216 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431
JBrowse link
G Reck reversion inducing cysteine rich protein with kazal motifs acts_upstream_of_or_within ISO (PMID:23213437) MGI PMID:23213437 NCBI chrNW_004624868:4,604,157...4,713,838
Ensembl chrNW_004624868:4,603,955...4,713,652
JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17553904) MGI PMID:17553904 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115
JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO (PMID:18256198) MGI PMID:18256198 NCBI chrNW_004624763:23,067,682...23,182,945
Ensembl chrNW_004624763:23,067,691...23,182,059
JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004624754:14,601,574...14,868,469
Ensembl chrNW_004624754:14,679,974...14,867,729
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11118883), (PMID:11476582) MGI PMID:11118883 PMID:11476582 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004624730:35,826,631...35,836,141
Ensembl chrNW_004624730:35,825,922...35,835,756
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:12116211) UniProt PMID:12116211 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451
JBrowse link
G Tbx5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within
IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:18,307,294...18,348,040
Ensembl chrNW_004624747:18,307,294...18,348,040
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:9811866) UniProt PMID:9811866 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379
JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:67,283,444...67,489,808
Ensembl chrNW_004624730:67,286,160...67,489,670
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:12175489) MGI PMID:12175489 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809
JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within
involved_in
ISO (PMID:15880584)
(PMID:9362463)
(PMID:16826533)
MGI
BHF-UCL
PMID:9362463 PMID:15880584 PMID:16826533 MGI:48652 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303
JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO (PMID:15371327) MGI PMID:15371327 NCBI chrNW_004624937:776,810...797,365
Ensembl chrNW_004624937:776,810...797,310
JBrowse link
embryonic genitalia morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chrNW_004624868:479,303...732,723
Ensembl chrNW_004624868:479,290...731,650
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624733:38,076,800...38,104,265
Ensembl chrNW_004624733:38,076,410...38,104,173
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624737:33,341,574...33,526,814
Ensembl chrNW_004624737:33,341,029...33,526,928
JBrowse link
embryonic heart tube development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apela apelin receptor early endogenous ligand involved_in ISO (PMID:28663440), (PMID:28854362) UniProt PMID:28663440 PMID:28854362 NCBI chrNW_004624758:11,944,563...11,954,027 JBrowse link
G Cdc42 cell division cycle 42 involved_in ISO (PMID:31219639) MGI PMID:31219639 NCBI chrNW_004624764:6,874,453...6,891,952 JBrowse link
G Chrd chordin involved_in ISO (PMID:17685487) MGI PMID:17685487 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chrNW_004624764:6,222,301...6,318,423
Ensembl chrNW_004624764:6,221,867...6,318,477
JBrowse link
G Edn1 endothelin 1 involved_in ISO (PMID:30735130)
(PMID:24875861)
(PMID:24875861), (PMID:31219639)
MGI PMID:24875861 PMID:30735130 PMID:31219639 NCBI chrNW_004624756:13,842,482...13,849,003
Ensembl chrNW_004624756:13,842,164...13,849,029
JBrowse link
G Ednra endothelin receptor type A involved_in ISO (PMID:20929948)
(PMID:30735130)
(PMID:24875861), (PMID:31219639)
MGI PMID:20929948 PMID:24875861 PMID:30735130 PMID:31219639 NCBI chrNW_004624853:6,298,406...6,362,353
Ensembl chrNW_004624853:6,302,751...6,360,089
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16720879) MGI PMID:16720879 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO (PMID:16678147) MGI PMID:16678147 NCBI chrNW_004624756:23,060,065...23,062,407
Ensembl chrNW_004624756:23,060,751...23,062,343
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:16678147) MGI PMID:16678147 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933)
(PMID:9136932)
MGI PMID:9136932 PMID:9136933 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318
JBrowse link
G Gja1 gap junction protein alpha 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624798:9,358,996...9,364,413
Ensembl chrNW_004624798:9,359,004...9,364,313
JBrowse link
G Gja5 gap junction protein alpha 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624772:16,810,723...16,828,328
Ensembl chrNW_004624772:16,813,011...16,814,084
JBrowse link
G Greb1l GREB1 like retinoic acid receptor coactivator acts_upstream_of_or_within ISO (PMID:37852253) MGI PMID:37852253 NCBI chrNW_004624770:10,223,131...10,471,309
Ensembl chrNW_004624770:10,225,669...10,345,173
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:9500551) MGI PMID:9500551 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:15459110) MGI PMID:15459110 NCBI chrNW_004624737:3,897,907...3,903,828
Ensembl chrNW_004624737:3,897,871...3,904,083
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:19000668) UniProt PMID:19000668 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:14500757) MGI PMID:14500757 NCBI chrNW_004624795:3,572,025...3,605,675
Ensembl chrNW_004624795:3,572,266...3,607,126
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chrNW_004624743:8,072,871...8,235,174
Ensembl chrNW_004624743:8,072,673...8,235,252
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538
JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:16,881,189...16,884,245
Ensembl chrNW_004624733:16,881,191...16,884,210
JBrowse link
G Nkx2-6 NK2 homeobox 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:18,908,988...18,914,794
Ensembl chrNW_004624758:18,911,010...18,914,001
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (PMID:25220058) MGI PMID:25220058 NCBI chrNW_004624745:31,402,791...31,516,522
Ensembl chrNW_004624745:31,403,014...31,515,751
JBrowse link
G Plxna4 plexin A4 involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chrNW_004624783:3,831,320...4,292,594
Ensembl chrNW_004624783:3,658,835...4,285,638
JBrowse link
G Slc8a1 solute carrier family 8 member A1 acts_upstream_of_or_within ISO (PMID:21302256) MGI PMID:21302256 NCBI chrNW_004624738:21,648,277...22,026,385
Ensembl chrNW_004624738:21,651,489...21,939,927
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:17610846) MGI PMID:17610846 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
G Sox18 SRY-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:17610846) MGI PMID:17610846 NCBI chrNW_004624741:29,679,274...29,681,069
Ensembl chrNW_004624741:29,679,091...29,681,049
JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within ISO (PMID:15843414) MGI PMID:15843414 NCBI chrNW_004624740:25,645,526...25,698,235
Ensembl chrNW_004624740:25,645,895...25,697,132
JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:23844108) MGI PMID:23844108 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451
JBrowse link
G Tmem94 transmembrane protein 94 acts_upstream_of_or_within ISO (PMID:30526868) MGI PMID:30526868 NCBI chrNW_004624801:5,262,610...5,306,230
Ensembl chrNW_004624801:5,282,318...5,305,525
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004624847:3,424,388...3,469,708
Ensembl chrNW_004624847:3,424,365...3,472,075
JBrowse link
embryonic heart tube elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx20 T-box transcription factor 20 involved_in ISO (PMID:15901664) BHF-UCL PMID:15901664 NCBI chrNW_004624740:25,645,526...25,698,235
Ensembl chrNW_004624740:25,645,895...25,697,132
JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:11076684) MGI PMID:11076684 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759
JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cimap3 ciliary microtubule associated protein 3 acts_upstream_of_or_within ISO (PMID:20643351) MGI PMID:20643351 NCBI chrNW_004624772:7,080,535...7,096,603
Ensembl chrNW_004624772:7,091,047...7,097,970
JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in ISO (PMID:15475956) BHF-UCL PMID:15475956 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:21209331) CACAO PMID:21209331 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323
JBrowse link
G Invs inversin acts_upstream_of_or_within ISO (PMID:9192865) MGI PMID:9192865 NCBI chrNW_004624825:701,335...866,598
Ensembl chrNW_004624825:702,347...866,353
JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISS CAFA GO_REF:0000024 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091
JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:16,881,189...16,884,245
Ensembl chrNW_004624733:16,881,191...16,884,210
JBrowse link
G Pitx2 paired like homeodomain 2 involved_in ISO (PMID:17234970) BHF-UCL PMID:17234970 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384
JBrowse link
embryonic heart tube morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:7,929,997...8,004,235
Ensembl chrNW_004624732:7,929,583...8,005,072
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in ISO (PMID:19609448) BHF-UCL PMID:19609448 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781
JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISS CAFA GO_REF:0000024 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091
JBrowse link
G Ryr2 ryanodine receptor 2 involved_in ISO (PMID:9628868) UniProt PMID:9628868 NCBI chrNW_004624775:12,954,653...13,650,449
Ensembl chrNW_004624775:12,956,042...13,419,381
JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (PMID:21305474) BHF-UCL PMID:21305474 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
G Tbx20 T-box transcription factor 20 involved_in ISO (PMID:15901664) BHF-UCL PMID:15901664 NCBI chrNW_004624740:25,645,526...25,698,235
Ensembl chrNW_004624740:25,645,895...25,697,132
JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004624766:4,694,337...4,935,121
Ensembl chrNW_004624766:4,694,016...4,928,302
JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004624832:4,821,697...4,837,257 JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004624878:621,214...776,363 JBrowse link
embryonic hemopoiesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:8,822,955...8,825,019
Ensembl chrNW_004624752:8,822,740...8,825,032
JBrowse link
G Ccdc134 coiled-coil domain containing 134 acts_upstream_of_or_within ISO (PMID:29115376) MGI PMID:29115376 NCBI chrNW_004624752:6,872,192...6,885,435
Ensembl chrNW_004624752:6,871,911...6,885,396
JBrowse link
G Flt3lg fms related receptor tyrosine kinase 3 ligand involved_in ISO (PMID:21149635) DFLAT PMID:21149635 NCBI chrNW_004624832:4,733,820...4,739,214 JBrowse link
G Gata1 GATA binding protein 1 acts_upstream_of_or_within ISO (PMID:9576834) MGI PMID:9576834 NCBI chrNW_004624893:595,948...602,980
Ensembl chrNW_004624893:595,967...602,979
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624775:2,985,077...3,014,567
Ensembl chrNW_004624775:2,994,164...3,015,392
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:16787915) MGI PMID:16787915 NCBI chrNW_004624734:39,414,458...39,471,705
Ensembl chrNW_004624734:39,411,824...39,471,705
JBrowse link
G Kat6a lysine acetyltransferase 6A acts_upstream_of_or_within ISO (PMID:16702405) MGI PMID:16702405 NCBI chrNW_004624780:1,237,326...1,378,718
Ensembl chrNW_004624780:1,240,292...1,376,072
JBrowse link
G Kdr kinase insert domain receptor involved_in ISO (PMID:7596435) UniProt PMID:7596435 NCBI chrNW_004624761:14,330,224...14,380,680
Ensembl chrNW_004624761:14,330,489...14,379,051
JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase involved_in ISO (PMID:20536544) UniProt PMID:20536544 NCBI chrNW_004624761:14,733,912...14,831,428 JBrowse link
G Kitlg KIT ligand involved_in ISO (PMID:21149635) DFLAT PMID:21149635 NCBI chrNW_004624837:7,456,116...7,541,764
Ensembl chrNW_004624837:7,456,120...7,541,730
JBrowse link
G Klf1 KLF transcription factor 1 acts_upstream_of_or_within ISO (PMID:7753194)
(PMID:19409822)
MGI PMID:7753194 PMID:19409822 NCBI chrNW_004624901:467,937...471,917
Ensembl chrNW_004624901:468,662...471,500
JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9639506) MGI
UniProt
PMID:9639506 GO_REF:0000117 NCBI chrNW_004624784:13,824,507...13,912,672
Ensembl chrNW_004624784:13,824,541...13,908,077
JBrowse link
G Lmo2 LIM domain only 2 acts_upstream_of_or_within ISO (PMID:10631184) MGI PMID:10631184 NCBI chrNW_004624767:13,245,783...13,257,322
Ensembl chrNW_004624767:13,245,984...13,257,440
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:14500757) MGI PMID:14500757 NCBI chrNW_004624795:3,572,025...3,605,675
Ensembl chrNW_004624795:3,572,266...3,607,126
JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO (PMID:11468159) MGI PMID:11468159 NCBI chrNW_004624826:2,944,272...3,250,957
Ensembl chrNW_004624826:2,945,004...3,215,110
JBrowse link
G Sh2b3 SH2B adaptor protein 3 acts_upstream_of_or_within
acts_upstream_of_negative_effect
ISO (PMID:14612394) MGI
BHF-UCL
PMID:14612394 NCBI chrNW_004624747:20,729,142...20,759,631
Ensembl chrNW_004624747:20,730,751...20,759,625
JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in
acts_upstream_of_or_within
ISO (PMID:19200805)
(PMID:7830794)
(PMID:15677556)
(PMID:9269761)
(PMID:7624372)
UniProt
MGI
PMID:7624372 PMID:7830794 PMID:9269761 PMID:15677556 PMID:19200805 NCBI chrNW_004624859:5,586,489...5,601,225
Ensembl chrNW_004624859:5,586,977...5,601,460
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in ISO (PMID:12975342) BHF-UCL PMID:12975342 NCBI chrNW_004624788:8,447,679...8,535,821
Ensembl chrNW_004624788:8,447,542...8,535,959
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (PMID:22187428) MGI PMID:22187428 NCBI chrNW_004624801:7,552,644...7,644,755
Ensembl chrNW_004624801:7,552,030...7,638,834
JBrowse link
G Tpo thyroid peroxidase involved_in ISO (PMID:21149635) DFLAT PMID:21149635 NCBI chrNW_004624846:1,934,084...1,962,637
Ensembl chrNW_004624846:1,934,469...1,961,291
JBrowse link
G Zfpm1 zinc finger protein, FOG family member 1 involved_in ISO (PMID:14614148) BHF-UCL PMID:14614148 NCBI chrNW_004624746:988,114...1,035,697
Ensembl chrNW_004624746:988,512...1,017,652
JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dact1 dishevelled binding antagonist of beta catenin 1 involved_in ISO (PMID:20145239) UniProt PMID:20145239 NCBI chrNW_004624884:3,733,648...3,750,207
Ensembl chrNW_004624884:3,739,334...3,948,621
JBrowse link
G Hoxa13 homeobox A13 ISO RGD PMID:17161201 RGD:1599527 NCBI chrNW_004624739:3,405,860...3,410,426
Ensembl chrNW_004624739:3,406,436...3,410,851
JBrowse link
G Hoxd13 homeobox D13 ISO RGD PMID:17161201 RGD:1599527 NCBI chrNW_004624787:13,233,932...13,237,210
Ensembl chrNW_004624787:13,233,932...13,238,503
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624733:38,076,800...38,104,265
Ensembl chrNW_004624733:38,076,410...38,104,173
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624737:33,341,574...33,526,814
Ensembl chrNW_004624737:33,341,029...33,526,928
JBrowse link
embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff3 ALF transcription elongation factor 3 involved_in ISO (PMID:18616733) BHF-UCL PMID:18616733 NCBI chrNW_004624749:4,494,740...5,015,118
Ensembl chrNW_004624749:4,498,621...4,773,900
JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004624772:5,826,823...5,836,853
Ensembl chrNW_004624772:5,826,600...5,836,853
JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:10964473) MGI PMID:10964473 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO (PMID:16207732) MGI PMID:16207732 NCBI chrNW_004624744:31,103,053...31,302,314
Ensembl chrNW_004624744:31,103,059...31,235,623
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:16319892) MGI PMID:16319892 NCBI chrNW_004624734:7,604,049...7,681,481
Ensembl chrNW_004624734:7,608,273...7,651,819
JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (PMID:16245339) MGI PMID:16245339 NCBI chrNW_004624767:17,381,387...17,385,698
Ensembl chrNW_004624767:17,381,791...17,383,468
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16245339) MGI PMID:16245339 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741
JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO (PMID:15797856) MGI PMID:15797856 NCBI chrNW_004624741:25,138,678...25,197,194
Ensembl chrNW_004624741:25,183,329...25,196,880
JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO (PMID:10964473) MGI PMID:10964473 NCBI chrNW_004624797:13,234,741...13,678,542
Ensembl chrNW_004624797:13,230,932...13,678,742
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18256198)
(PMID:15880584)
(PMID:19653321)
MGI PMID:15880584 PMID:18256198 PMID:19653321 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chrNW_004624730:47,104,929...47,693,885
Ensembl chrNW_004624730:47,104,319...47,284,839
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:14500757) MGI PMID:14500757 NCBI chrNW_004624795:3,572,025...3,605,675
Ensembl chrNW_004624795:3,572,266...3,607,126
JBrowse link
G Mmp13 matrix metallopeptidase 13 ISO RGD PMID:11850435 RGD:1582550 NCBI chrNW_004624918:2,228,688...2,239,852 JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21465616) MGI
UniProt
PMID:21465616 GO_REF:0000117 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16245338) MGI PMID:16245338 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:21262216) BHF-UCL PMID:21262216 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437
JBrowse link
G Pitx1 paired like homeodomain 1 acts_upstream_of_or_within
involved_in
ISO (PMID:18231602)
(PMID:22071103)
MGI
CACAO
PMID:18231602 PMID:22071103 NCBI chrNW_004624733:12,028,497...12,034,612
Ensembl chrNW_004624733:12,029,298...12,034,413
JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:18231602) MGI PMID:18231602 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384
JBrowse link
G Rarb retinoic acid receptor beta acts_upstream_of_or_within ISO (PMID:10075839) MGI PMID:10075839 NCBI chrNW_004624788:2,738,341...3,493,140
Ensembl chrNW_004624788:3,257,697...3,493,132
JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:10075839) MGI PMID:10075839 NCBI chrNW_004624904:1,255,854...1,277,946 JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17553904) MGI PMID:17553904 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115
JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO (PMID:18256198) MGI PMID:18256198 NCBI chrNW_004624763:23,067,682...23,182,945
Ensembl chrNW_004624763:23,067,691...23,182,059
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11118883) MGI PMID:11118883 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:16192310) MGI PMID:16192310 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968
JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:23844108) MGI PMID:23844108 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451
JBrowse link
G Tbx4 T-box transcription factor 4 involved_in ISO (PMID:31761294) UniProt PMID:31761294 NCBI chrNW_004624871:2,365,836...2,390,269
Ensembl chrNW_004624871:2,366,823...2,390,269
JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:67,283,444...67,489,808
Ensembl chrNW_004624730:67,286,160...67,489,670
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:8988167) BHF-UCL PMID:8988167 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809
JBrowse link
G Wnt7a Wnt family member 7A involved_in
acts_upstream_of_or_within
ISO (PMID:16826533)
(PMID:15880584)
BHF-UCL
MGI
PMID:15880584 PMID:16826533 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO
IEA
RGD
Ensembl
PMID:19191224 GO_REF:0000107 RGD:2312786 NCBI chrNW_004624784:9,545,529...9,726,960
Ensembl chrNW_004624784:9,546,509...9,726,960
JBrowse link
embryonic limb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD shelterin complex subunit and telomerase recruitment factor acts_upstream_of_or_within ISO (PMID:15537664) MGI PMID:15537664 NCBI chrNW_004624746:18,688,898...18,692,216
Ensembl chrNW_004624746:18,689,364...18,695,944
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:14623241) MGI PMID:14623241 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9664686) MGI PMID:9664686 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:9664686) MGI PMID:9664686 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742
JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004624817:2,880,775...3,060,399
Ensembl chrNW_004624817:2,880,976...3,042,004
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (PMID:16079159) MGI PMID:16079159 NCBI chrNW_004624750:4,227,229...4,391,177
Ensembl chrNW_004624750:4,223,561...4,391,218
JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:16040801) MGI PMID:16040801 NCBI chrNW_004624734:7,604,049...7,681,481
Ensembl chrNW_004624734:7,608,273...7,651,819
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982
JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624813:3,760,890...3,765,309
Ensembl chrNW_004624813:3,760,661...3,765,517
JBrowse link
G Dlx6 distal-less homeobox 6 acts_upstream_of_or_within ISO (PMID:18326838)
(PMID:12112878)
MGI PMID:12112878 PMID:18326838 NCBI chrNW_004624813:3,746,040...3,751,542
Ensembl chrNW_004624813:3,746,046...3,752,905
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO (PMID:16229832) MGI PMID:16229832 NCBI chrNW_004624918:1,730,675...2,071,231
Ensembl chrNW_004624918:1,730,708...2,071,072
JBrowse link
G En1 engrailed homeobox 1 involved_in
acts_upstream_of_or_within
ISO (PMID:7624797)
(PMID:8684466)
(PMID:15242796)
ParkinsonsUK-UCL
MGI
PMID:7624797 PMID:8684466 PMID:15242796 NCBI chrNW_004624732:26,333,642...26,338,450
Ensembl chrNW_004624732:26,333,653...26,337,904
JBrowse link
G Fbn2 fibrillin 2 acts_upstream_of_or_within ISO (PMID:11285249)
(PMID:11350121)
MGI PMID:11285249 PMID:11350121 NCBI chrNW_004624774:12,863,446...13,116,929
Ensembl chrNW_004624774:12,863,446...13,116,545
JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (PMID:15328019) MGI PMID:15328019 NCBI chrNW_004624767:17,381,387...17,385,698
Ensembl chrNW_004624767:17,381,791...17,383,468
JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624776:16,022,118...16,055,413
Ensembl chrNW_004624776:16,019,835...16,055,498
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (PMID:16207751) MGI PMID:16207751 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870
JBrowse link
G Fras1 Fraser extracellular matrix complex subunit 1 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004624757:12,529,475...12,973,751
Ensembl chrNW_004624757:12,532,466...12,972,918
JBrowse link
G Gdf5 growth differentiation factor 5 acts_upstream_of_or_within ISO (PMID:15542031) MGI PMID:15542031 NCBI chrNW_004624842:3,958,814...3,963,713
Ensembl chrNW_004624842:3,959,617...3,963,020
JBrowse link
G Gja5 gap junction protein alpha 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624772:16,810,723...16,828,328
Ensembl chrNW_004624772:16,813,011...16,814,084
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:12142027), (PMID:12435361), (PMID:12435627), (PMID:19809516), (PMID:8387379)
(PMID:19422820)
(PMID:16284117)
MGI PMID:8387379 PMID:12142027 PMID:12435361 PMID:12435627 PMID:16284117 More... NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624804:1,606,182...1,620,932
Ensembl chrNW_004624804:1,608,757...1,620,938
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO (PMID:10090727) MGI PMID:10090727 NCBI chrNW_004624747:12,717,713...12,746,040
Ensembl chrNW_004624747:12,717,707...12,746,724
JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624739:3,425,468...3,435,218
Ensembl chrNW_004624739:3,425,468...3,433,967
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:14668414) MGI PMID:14668414 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950
JBrowse link
G Hoxc10 homeobox C10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624904:2,040,018...2,044,881
Ensembl chrNW_004624904:2,039,754...2,045,096
JBrowse link
G Hoxd10 homeobox D10 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624787:13,256,600...13,260,664
Ensembl chrNW_004624787:13,257,387...13,262,685
JBrowse link
G Hoxd13 homeobox D13 acts_upstream_of_or_within ISO (PMID:11850178) MGI PMID:11850178 NCBI chrNW_004624787:13,233,932...13,237,210
Ensembl chrNW_004624787:13,233,932...13,238,503
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:10090727) MGI PMID:10090727 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389
JBrowse link
G LOC101714280 cytochrome P450 26B1 acts_upstream_of_or_within ISO (PMID:15030763) MGI PMID:15030763 NCBI chrNW_004624762:1,455,828...1,474,201
Ensembl chrNW_004624762:1,456,440...1,472,381
JBrowse link
G LOC101723938 ALX homeobox protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624837:4,222,679...4,473,532
Ensembl chrNW_004624837:4,234,677...4,414,783
Ensembl chrNW_004624837:4,234,677...4,414,783
JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO (PMID:17119023)
(PMID:16207730)
MGI PMID:16207730 PMID:17119023 NCBI chrNW_004624767:1,708,866...1,757,629 JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:20359476) MGI PMID:20359476 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 involved_in ISO (PMID:12915312) UniProt PMID:12915312 NCBI chrNW_004624730:29,930,292...30,112,145
Ensembl chrNW_004624730:29,959,580...30,113,245
JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISS CAFA GO_REF:0000024 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091
JBrowse link
G Mosmo modulator of smoothened acts_upstream_of_or_within ISO (PMID:34486668) MGI PMID:34486668 NCBI chrNW_004624782:7,455,770...7,513,931 JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:15930102)
(PMID:19422820)
MGI PMID:15930102 PMID:19422820 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568
JBrowse link
G Mustn1 musculoskeletal, embryonic nuclear protein 1 ISO RGD PMID:14718386 RGD:1302424 NCBI chrNW_004624822:4,388,562...4,395,494
Ensembl chrNW_004624822:4,390,682...4,395,494
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16169548) MGI PMID:16169548 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531
JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO (PMID:16169548) MGI PMID:16169548 NCBI chrNW_004624772:15,572,350...15,726,312
Ensembl chrNW_004624772:15,571,998...15,726,426
JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO (PMID:16672333) MGI PMID:16672333 NCBI chrNW_004624826:2,944,272...3,250,957
Ensembl chrNW_004624826:2,945,004...3,215,110
JBrowse link
G Pbx2 PBX homeobox 2 acts_upstream_of_or_within ISO (PMID:16672333) MGI PMID:16672333 NCBI chrNW_004624754:24,132,886...24,137,699 JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994
JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO (PMID:9729491), (PMID:9882503) MGI PMID:9729491 PMID:9882503 NCBI chrNW_004624826:8,361,039...8,435,488
Ensembl chrNW_004624826:8,361,033...8,435,656
JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491), (PMID:9882503) MGI PMID:9729491 PMID:9882503 NCBI chrNW_004624760:5,656,456...5,684,383
Ensembl chrNW_004624760:5,656,521...5,692,934
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:16169548) MGI PMID:16169548 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743
JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (PMID:16169548) MGI PMID:16169548 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188
JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:11784021)
(PMID:11389830)
MGI PMID:11389830 PMID:11784021 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389
JBrowse link
G Sall4 spalt like transcription factor 4 acts_upstream_of_or_within ISO (PMID:16380715) MGI PMID:16380715 NCBI chrNW_004624790:4,153,157...4,170,813
Ensembl chrNW_004624790:4,162,454...4,170,923
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11389830)
(PMID:19422820)
(PMID:15315763)
MGI PMID:11389830 PMID:15315763 PMID:19422820 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:17481601)
(PMID:16537395)
MGI PMID:16537395 PMID:17481601 NCBI chrNW_004624730:35,826,631...35,836,141
Ensembl chrNW_004624730:35,825,922...35,835,756
JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:12435627) MGI PMID:12435627 NCBI chrNW_004624818:7,674,184...7,736,249
Ensembl chrNW_004624818:7,673,203...7,736,255
JBrowse link
G Sp8 Sp8 transcription factor involved_in
acts_upstream_of_or_within
ISO (PMID:15358670)
(PMID:14597661)
UniProt
MGI
PMID:14597661 PMID:15358670 NCBI chrNW_004624739:9,792,963...9,795,697
Ensembl chrNW_004624739:9,793,290...9,795,684
JBrowse link
G Sp9 Sp9 transcription factor involved_in ISO (PMID:15358670) UniProt PMID:15358670 NCBI chrNW_004624787:11,576,707...11,579,871
Ensembl chrNW_004624787:11,576,717...11,579,977
JBrowse link
G Tbx4 T-box transcription factor 4 acts_upstream_of_or_within ISO (PMID:12736212) MGI PMID:12736212 NCBI chrNW_004624871:2,365,836...2,390,269
Ensembl chrNW_004624871:2,366,823...2,390,269
JBrowse link
G Tbx5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within
IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:18,307,294...18,348,040
Ensembl chrNW_004624747:18,307,294...18,348,040
JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643
JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:67,283,444...67,489,808
Ensembl chrNW_004624730:67,286,160...67,489,670
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15030764)
(PMID:11350121)
(PMID:12142027)
MGI PMID:11350121 PMID:12142027 PMID:15030764 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:10021340) MGI PMID:10021340 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO (PMID:15242796) MGI PMID:15242796 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO MGI MGI:61278 NCBI chrNW_004624784:9,545,529...9,726,960
Ensembl chrNW_004624784:9,546,509...9,726,960
JBrowse link
embryonic liver development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc134 coiled-coil domain containing 134 acts_upstream_of_or_within ISO (PMID:29115376) MGI PMID:29115376 NCBI chrNW_004624752:6,872,192...6,885,435
Ensembl chrNW_004624752:6,871,911...6,885,396
JBrowse link
G Gamt guanidinoacetate N-methyltransferase ISO RGD PMID:15918910 RGD:1599815 NCBI chrNW_004624828:7,294,380...7,297,787
Ensembl chrNW_004624828:7,294,327...7,297,303
JBrowse link
G Gatm glycine amidinotransferase ISO RGD PMID:15918910 RGD:1599815 NCBI chrNW_004624731:13,941,084...13,954,910
Ensembl chrNW_004624731:13,941,049...13,955,461
JBrowse link
G Insr insulin receptor ISO RGD PMID:1448116 RGD:14700803 NCBI chrNW_004624828:345,135...485,856
Ensembl chrNW_004624828:345,135...486,184
JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:7600998) BHF-UCL PMID:7600998 NCBI chrNW_004624907:162,567...175,696
Ensembl chrNW_004624907:161,569...176,605
JBrowse link
embryonic lung development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-1 NK2 homeobox 1 ISO RGD PMID:23894445 RGD:12911205 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517
JBrowse link
G Pdgfa platelet derived growth factor subunit A involved_in ISO (PMID:9374392) BHF-UCL PMID:9374392 NCBI chrNW_004624740:26,172,808...26,191,557
Ensembl chrNW_004624740:26,169,064...26,188,866
JBrowse link
G Tbx4 T-box transcription factor 4 involved_in ISO (PMID:31761294) UniProt PMID:31761294 NCBI chrNW_004624871:2,365,836...2,390,269
Ensembl chrNW_004624871:2,366,823...2,390,269
JBrowse link
embryonic morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:15716346) MGI PMID:15716346 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:15716346) MGI PMID:15716346 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397
JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (PMID:17504941) MGI PMID:17504941 NCBI chrNW_004624812:107,632...203,791
Ensembl chrNW_004624812:109,405...203,519
JBrowse link
G CUNH2orf49 chromosome unknown C2orf49 homolog involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624749:9,437,322...9,448,119
Ensembl chrNW_004624749:9,437,273...9,445,644
JBrowse link
G Dact1 dishevelled binding antagonist of beta catenin 1 acts_upstream_of_or_within ISO (PMID:19701191) MGI PMID:19701191 NCBI chrNW_004624884:3,733,648...3,750,207
Ensembl chrNW_004624884:3,739,334...3,948,621
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within_positive_effect ISO (PMID:10926768) MGI PMID:10926768 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804
JBrowse link
G Fbn1 fibrillin 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624731:11,086,240...11,318,111
Ensembl chrNW_004624731:11,086,844...11,318,102
JBrowse link
G Fbn2 fibrillin 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624774:12,863,446...13,116,929
Ensembl chrNW_004624774:12,863,446...13,116,545
JBrowse link
G Flrt3 fibronectin leucine rich transmembrane protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624741:15,343,304...15,355,742
Ensembl chrNW_004624741:15,343,653...15,355,727
JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 involved_in ISO (PMID:7596436) UniProt PMID:7596436 NCBI chrNW_004624776:10,043,113...10,218,598
Ensembl chrNW_004624776:10,043,258...10,219,104
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504941) MGI PMID:17504941 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933)
(PMID:9136932)
MGI PMID:9136932 PMID:9136933 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:8387379) MGI PMID:8387379 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Hnf1b HNF1 homeobox B ISO RGD PMID:12860991 RGD:1599302 NCBI chrNW_004624871:4,662,104...4,713,125
Ensembl chrNW_004624871:4,661,669...4,712,960
JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B involved_in ISO (PMID:9165122) UniProt PMID:9165122 NCBI chrNW_004624843:4,407,055...4,424,585
Ensembl chrNW_004624843:4,408,424...4,424,168
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769
JBrowse link
G Itga8 integrin subunit alpha 8 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624796:11,908,927...12,103,806
Ensembl chrNW_004624796:11,908,964...12,101,139
JBrowse link
G Megf8 multiple EGF like domains 8 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091
JBrowse link
G Msx1 msh homeobox 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337
JBrowse link
G Msx2 msh homeobox 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568
JBrowse link
G Rock1 Rho associated coiled-coil containing protein kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624770:10,592,304...10,731,640 JBrowse link
G Rock2 Rho associated coiled-coil containing protein kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624865:4,461,200...4,591,309
Ensembl chrNW_004624865:4,461,215...4,588,836
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:16492970), (PMID:17881493) MGI
UniProt
PMID:16492970 PMID:17881493 GO_REF:0000117 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:16141225) MGI PMID:16141225 NCBI chrNW_004624730:35,826,631...35,836,141
Ensembl chrNW_004624730:35,825,922...35,835,756
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 involved_in ISO (PMID:20178780) UniProt PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955
JBrowse link
G Ventx VENT homeobox involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:13,415,558...13,416,906 JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:16598713) MGI PMID:16598713 NCBI chrNW_004624805:3,964,448...4,044,546
Ensembl chrNW_004624805:3,964,450...4,042,527
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:16598713) MGI PMID:16598713 NCBI chrNW_004624732:44,097,348...44,226,701
Ensembl chrNW_004624732:44,101,613...44,139,997
JBrowse link
embryonic nail plate morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO (PMID:23439395) MGI PMID:23439395 NCBI chrNW_004624763:19,861,837...19,888,626 JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21465616) MGI
UniProt
PMID:21465616 GO_REF:0000117 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994
JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:27395007) MGI PMID:27395007 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741
JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:27395007) MGI PMID:27395007 NCBI chrNW_004624832:4,509,118...4,514,180
Ensembl chrNW_004624832:4,509,505...4,514,183
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:27395007) MGI PMID:27395007 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chrNW_004624739:3,509,020...3,511,890
Ensembl chrNW_004624739:3,508,838...3,511,864
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20589884) MGI PMID:20589884 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in ISO (PMID:23267094) BHF-UCL PMID:23267094 NCBI chrNW_004624785:7,129,969...7,328,331
Ensembl chrNW_004624785:7,129,859...7,328,153
JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624774:9,758,459...9,821,309
Ensembl chrNW_004624774:9,758,809...9,821,309
JBrowse link
G Tgfb2 transforming growth factor beta 2 ISO RGD PMID:11002343 RGD:1579866 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643
JBrowse link
G Tgfb3 transforming growth factor beta 3 ISO RGD PMID:11002343 RGD:1579866 NCBI chrNW_004624734:25,717,011...25,739,942
Ensembl chrNW_004624734:25,716,972...25,739,199
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225
JBrowse link
embryonic organ development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid2 AT-rich interaction domain 2 acts_upstream_of_or_within ISO (PMID:25299188) MGI PMID:25299188 NCBI chrNW_004624816:6,329,888...6,521,535
Ensembl chrNW_004624816:6,332,612...6,521,535
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
ISO (PMID:11854453)
(PMID:17359964)
BHF-UCL
MGI
PMID:11854453 PMID:17359964 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397
JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Ddit3 DNA damage inducible transcript 3 ISO RGD PMID:10419986 RGD:62382 NCBI chrNW_004624802:10,437,998...10,443,278 JBrowse link
G Epn1 epsin 1 acts_upstream_of_or_within ISO (PMID:19666558) MGI PMID:19666558 NCBI chrNW_004624832:1,732,895...1,746,963
Ensembl chrNW_004624832:1,732,571...1,746,888
JBrowse link
G Epn2 epsin 2 acts_upstream_of_or_within ISO (PMID:19666558) MGI PMID:19666558 NCBI chrNW_004624849:5,520,279...5,632,152
Ensembl chrNW_004624849:5,577,679...5,633,008
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO RGD PMID:11425516 RGD:2313673 NCBI chrNW_004624907:2,288,380...2,298,909
Ensembl chrNW_004624907:2,288,423...2,298,373
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO RGD PMID:11425516 RGD:2313673 NCBI chrNW_004624907:2,249,323...2,263,999
Ensembl chrNW_004624907:2,250,133...2,263,947
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO
IEA
RGD
TreeGrafter
PMID:11425516 GO_REF:0000118 RGD:2313673 NCBI chrNW_004624732:13,730,648...13,776,886
Ensembl chrNW_004624732:13,729,947...13,776,870
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:9435295) MGI PMID:9435295 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Gata3 GATA binding protein 3 involved_in
acts_upstream_of_or_within
IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624775:2,985,077...3,014,567
Ensembl chrNW_004624775:2,994,164...3,015,392
JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (PMID:22998873) ARUK-UCL PMID:22998873 NCBI chrNW_004624759:17,263,570...17,290,046
Ensembl chrNW_004624759:17,263,969...17,287,723
JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21377456) MGI PMID:21377456 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:16364283) MGI PMID:16364283 NCBI chrNW_004624737:3,897,907...3,903,828
Ensembl chrNW_004624737:3,897,871...3,904,083
JBrowse link
G Hoxb7 homeobox B7 involved_in ISO (PMID:2885844) UniProt PMID:2885844 NCBI chrNW_004624795:5,105,032...5,109,379
Ensembl chrNW_004624795:5,105,622...5,108,367
JBrowse link
G Hoxd4 homeobox D4 involved_in ISO (PMID:2879245) UniProt PMID:2879245 NCBI chrNW_004624787:13,290,250...13,296,315
Ensembl chrNW_004624787:13,290,703...13,296,311
JBrowse link
G Hsd17b7 hydroxysteroid 17-beta dehydrogenase 7 involved_in ISO (PMID:18669642) UniProt PMID:18669642 NCBI chrNW_004624826:1,260,133...1,287,565
Ensembl chrNW_004624826:1,260,223...1,283,741
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (PMID:23028370) MGI PMID:23028370 NCBI chrNW_004624887:1,065,173...1,279,660
Ensembl chrNW_004624887:1,065,883...1,279,186
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO RGD PMID:12672019 RGD:9587841 NCBI chrNW_004624778:17,880,480...17,959,879
Ensembl chrNW_004624778:17,883,933...17,959,880
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 ISO RGD PMID:12672019 RGD:9587841 NCBI chrNW_004624828:7,132,228...7,144,599
Ensembl chrNW_004624828:7,132,274...7,144,964
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20589884) MGI PMID:20589884 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474
JBrowse link
G Mrtfb myocardin related transcription factor B acts_upstream_of_or_within ISO (PMID:17183527) MGI PMID:17183527 NCBI chrNW_004624782:4,217,620...4,416,161
Ensembl chrNW_004624782:4,217,522...4,408,175
JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO (PMID:23657012) MGI PMID:23657012 NCBI chrNW_004624782:8,752,510...8,780,972
Ensembl chrNW_004624782:8,751,866...8,780,884
JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO (PMID:15581866) MGI PMID:15581866 NCBI chrNW_004624826:2,944,272...3,250,957
Ensembl chrNW_004624826:2,945,004...3,215,110
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta involved_in ISO (PMID:10375497) UniProt PMID:10375497 NCBI chrNW_004624774:9,432,765...9,469,690
Ensembl chrNW_004624774:9,432,541...9,469,881
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624872:4,539,965...4,592,004
Ensembl chrNW_004624872:4,539,847...4,594,793
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO RGD PMID:11425516 RGD:2313673 NCBI chrNW_004624747:28,024,230...28,068,390
Ensembl chrNW_004624747:28,024,975...28,068,344
JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:24302887) MGI PMID:24302887 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389
JBrowse link
G Rad23b RAD23 nucleotide excision repair protein B ISO RGD PMID:11425516 RGD:2313673 NCBI chrNW_004624758:4,168,341...4,211,893
Ensembl chrNW_004624758:4,167,215...4,211,487
JBrowse link
G Rbbp6 RB binding protein 6, ubiquitin ligase acts_upstream_of_or_within ISO (PMID:17470788) MGI PMID:17470788 NCBI chrNW_004624782:9,559,333...9,592,648
Ensembl chrNW_004624782:9,558,768...9,594,961
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:20133625) MGI PMID:20133625 NCBI chrNW_004624730:74,187,981...74,277,857
Ensembl chrNW_004624730:74,187,995...74,277,200
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:15680353) MGI PMID:15680353 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:24302887) MGI PMID:24302887 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:19913509) MGI PMID:19913509 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:17522155) MGI PMID:17522155 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871
JBrowse link
G Syf2 SYF2 pre-mRNA splicing factor acts_upstream_of_or_within ISO (PMID:22448250) MGI PMID:22448250 NCBI chrNW_004624764:9,464,487...9,479,714
Ensembl chrNW_004624764:9,463,586...9,479,786
JBrowse link
G Tead1 TEA domain transcription factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624766:4,694,337...4,935,121
Ensembl chrNW_004624766:4,694,016...4,928,302
JBrowse link
G Tead2 TEA domain transcription factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624832:4,821,697...4,837,257 JBrowse link
G Tead3 TEA domain transcription factor 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:21,971,362...21,987,128
Ensembl chrNW_004624754:21,971,445...21,986,557
JBrowse link
G Tead4 TEA domain transcription factor 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624860:314,404...368,212
Ensembl chrNW_004624860:297,601...368,274
JBrowse link
G Thra thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chrNW_004624795:3,109,663...3,132,494
Ensembl chrNW_004624795:3,108,854...3,132,464
JBrowse link
G Thrb thyroid hormone receptor beta ISO RGD PMID:17496154 RGD:2314319 NCBI chrNW_004624788:1,950,888...2,348,895
Ensembl chrNW_004624788:1,950,890...2,349,343
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (PMID:22187428) MGI PMID:22187428 NCBI chrNW_004624801:7,552,644...7,644,755
Ensembl chrNW_004624801:7,552,030...7,638,834
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:17470788) MGI PMID:17470788 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218
JBrowse link
G Utp25 UTP25 small subunit processome component involved_in ISO (PMID:27657329) UniProt PMID:27657329 NCBI chrNW_004624807:2,069,501...2,166,859
Ensembl chrNW_004624807:2,145,963...2,166,885
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO (PMID:24302887) MGI PMID:24302887 NCBI chrNW_004624762:9,901,021...10,303,217
Ensembl chrNW_004624762:9,970,904...10,303,046
JBrowse link
G Wdr48 WD repeat domain 48 acts_upstream_of_or_within ISO (PMID:24001775) MGI PMID:24001775 NCBI chrNW_004624731:1,884,660...1,934,818
Ensembl chrNW_004624731:1,884,666...1,934,754
JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO (PMID:18367557) MGI PMID:18367557 NCBI chrNW_004624752:3,818,073...3,856,602
Ensembl chrNW_004624752:3,818,025...3,857,027
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:32,251,100...32,256,458
Ensembl chrNW_004624734:32,251,114...32,257,211
JBrowse link
G Zfpm2 zinc finger protein, FOG family member 2 acts_upstream_of_or_within ISO (PMID:16103912) MGI PMID:16103912 NCBI chrNW_004624763:21,388,060...21,708,969
Ensembl chrNW_004624763:21,388,244...21,707,953
JBrowse link
embryonic organ morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15843416) MGI
UniProt
PMID:15843416 GO_REF:0000117 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Foxe1 forkhead box E1 acts_upstream_of_or_within ISO (PMID:9697704) MGI PMID:9697704 NCBI chrNW_004624825:2,979,447...2,981,412
Ensembl chrNW_004624825:2,980,176...2,981,303
JBrowse link
G Gli1 GLI family zinc finger 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624802:10,483,279...10,494,539
Ensembl chrNW_004624802:10,483,219...10,498,609
JBrowse link
G Gli2 GLI family zinc finger 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
G Gli3 GLI family zinc finger 3 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Hoxa4 homeobox A4 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624739:3,474,868...3,477,190
Ensembl chrNW_004624739:3,474,990...3,476,486
JBrowse link
G Hoxb4 homeobox B4 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624795:5,074,147...5,077,714
Ensembl chrNW_004624795:5,073,119...5,078,419
JBrowse link
G Hoxc4 homeobox C4 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624904:2,104,504...2,109,729
Ensembl chrNW_004624904:2,092,055...2,109,979
JBrowse link
G Hoxd4 homeobox D4 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624787:13,290,250...13,296,315
Ensembl chrNW_004624787:13,290,703...13,296,311
JBrowse link
G Neurod1 neuronal differentiation 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624844:3,493,819...3,497,814
Ensembl chrNW_004624844:3,494,677...3,497,759
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295
JBrowse link
G Nog noggin involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:15994349) BHF-UCL PMID:15994349 NCBI chrNW_004624737:4,795,054...4,800,830
Ensembl chrNW_004624737:4,791,628...4,800,989
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:16287714) MGI PMID:16287714 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968
JBrowse link
embryonic pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:10049573) MGI PMID:10049573 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742
JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO (PMID:12372301) MGI PMID:12372301 NCBI chrNW_004624835:5,316,620...5,468,179
Ensembl chrNW_004624835:5,316,585...5,468,156
JBrowse link
G Dop1b DOP1 leucine zipper like protein B involved_in ISO (PMID:10950924) UniProt PMID:10950924 NCBI chrNW_004624745:27,196,417...27,292,290
Ensembl chrNW_004624745:27,197,068...27,265,087
JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624891:1,394,948...1,407,898
Ensembl chrNW_004624891:1,394,852...1,407,959
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in ISO (PMID:10655590) UniProt PMID:10655590 NCBI chrNW_004624765:3,612,781...4,742,219
Ensembl chrNW_004624765:3,613,379...4,734,585
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:16618415) MGI PMID:16618415 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10529425) MGI PMID:10529425 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19653321) MGI PMID:19653321 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Nanog Nanog homeobox involved_in ISO (PMID:15108323) HGNC-UCL PMID:15108323 NCBI chrNW_004624860:5,026,203...5,037,219 JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO (PMID:15550757) MGI PMID:15550757 NCBI chrNW_004624762:430,981...439,422 JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO (PMID:10529425) MGI PMID:10529425 NCBI chrNW_004624889:3,174,626...3,256,555
Ensembl chrNW_004624889:3,174,739...3,244,315
JBrowse link
G Ripply1 ripply transcriptional repressor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624803:9,868,707...9,879,909 JBrowse link
G Ripply3 ripply transcriptional repressor 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624745:26,636,307...26,658,373 JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO (PMID:16751105) MGI PMID:16751105 NCBI chrNW_004624889:1,321,323...1,466,368
Ensembl chrNW_004624889:1,321,345...1,466,319
JBrowse link
G Sim2 SIM bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:12024028) MGI PMID:12024028 NCBI chrNW_004624745:26,851,423...26,891,590
Ensembl chrNW_004624745:26,852,980...26,891,176
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:17984226) MGI PMID:17984226 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:9,545,529...9,726,960
Ensembl chrNW_004624784:9,546,509...9,726,960
JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:16397896) MGI PMID:16397896 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093
JBrowse link
embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arnt aryl hydrocarbon receptor nuclear translocator acts_upstream_of_or_within ISO (PMID:16287860) MGI PMID:16287860 NCBI chrNW_004624772:18,949,221...19,016,672
Ensembl chrNW_004624772:18,949,108...19,015,504
JBrowse link
G Bptf bromodomain PHD finger transcription factor acts_upstream_of_or_within ISO (PMID:18794365) MGI PMID:18794365 NCBI chrNW_004624870:489,359...626,677
Ensembl chrNW_004624870:487,955...626,683
JBrowse link
G Cebpa CCAAT enhancer binding protein alpha acts_upstream_of_or_within ISO (PMID:15509779) MGI PMID:15509779 NCBI chrNW_004624794:9,809,007...9,813,418 JBrowse link
G Cebpb CCAAT enhancer binding protein beta acts_upstream_of_or_within ISO (PMID:15509779) MGI PMID:15509779 NCBI chrNW_004624790:5,367,808...5,369,686
Ensembl chrNW_004624790:5,368,349...5,369,377
JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:16579983) MGI PMID:16579983 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536
JBrowse link
G Csf2 colony stimulating factor 2 acts_upstream_of_or_within ISO (PMID:19228596) MGI PMID:19228596 NCBI chrNW_004624733:40,039,127...40,041,294
Ensembl chrNW_004624733:40,039,414...40,041,294
JBrowse link
G Egfr epidermal growth factor receptor acts_upstream_of_or_within ISO (PMID:7618084) MGI PMID:7618084 NCBI chrNW_004624740:584,133...713,205
Ensembl chrNW_004624740:589,606...713,271
JBrowse link
G Epas1 endothelial PAS domain protein 1 acts_upstream_of_or_within ISO (PMID:16287860) MGI PMID:16287860 NCBI chrNW_004624738:27,747,770...27,831,213
Ensembl chrNW_004624738:27,747,696...27,834,054
JBrowse link
G Esrrb estrogen related receptor beta acts_upstream_of_or_within ISO (PMID:9285590) MGI PMID:9285590 NCBI chrNW_004624734:25,261,493...25,369,092
Ensembl chrNW_004624734:25,261,493...25,430,045
JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO (PMID:9043071) MGI PMID:9043071 NCBI chrNW_004624961:147,685...155,614
Ensembl chrNW_004624961:143,358...154,003
JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:24855001) MGI PMID:24855001 NCBI chrNW_004624820:1,097,323...1,196,556
Ensembl chrNW_004624820:1,097,463...1,196,499
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:16287860) MGI PMID:16287860 NCBI chrNW_004624734:39,414,458...39,471,705
Ensembl chrNW_004624734:39,411,824...39,471,705
JBrowse link
G Hsf1 heat shock transcription factor 1 acts_upstream_of_or_within ISO (PMID:10545106) MGI PMID:10545106 NCBI chrNW_004624735:12,536,818...12,562,643
Ensembl chrNW_004624735:12,537,128...12,562,644
JBrowse link
G Igf2 insulin like growth factor 2 involved_in ISO (PMID:12087403) UniProt PMID:12087403 NCBI chrNW_004624767:14,969,977...14,997,577
Ensembl chrNW_004624767:14,969,866...14,979,026
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:14500757) MGI PMID:14500757 NCBI chrNW_004624795:3,572,025...3,605,675
Ensembl chrNW_004624795:3,572,266...3,607,126
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11456449) MGI PMID:11456449 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Pdgfb platelet derived growth factor subunit B involved_in ISO (PMID:15084468) UniProt PMID:15084468 NCBI chrNW_004624752:9,072,471...9,088,289
Ensembl chrNW_004624752:9,072,512...9,088,593
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:20862291) BHF-UCL PMID:20862291 NCBI chrNW_004624913:118,520...166,939
Ensembl chrNW_004624913:118,733...165,859
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in
acts_upstream_of_or_within
ISO (PMID:20862291)
(PMID:16301212)
BHF-UCL
MGI
PMID:16301212 PMID:20862291 NCBI chrNW_004624872:4,539,965...4,592,004
Ensembl chrNW_004624872:4,539,847...4,594,793
JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:16,205,056...16,227,382
Ensembl chrNW_004624780:16,204,838...16,227,390
JBrowse link
G Rtl1 retrotransposon Gag like 1 acts_upstream_of_or_within ISO (PMID:28111885)
(PMID:26138477)
MGI PMID:26138477 PMID:28111885 NCBI chrNW_004624734:3,219,270...3,227,154 JBrowse link
G Slc8a1 solute carrier family 8 member A1 acts_upstream_of_or_within ISO (PMID:21302256) MGI PMID:21302256 NCBI chrNW_004624738:21,648,277...22,026,385
Ensembl chrNW_004624738:21,651,489...21,939,927
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624904:1,475,664...1,507,588 JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624787:11,144,581...11,193,520 JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within ISO (PMID:15964823) MGI PMID:15964823 NCBI chrNW_004624804:8,092,700...8,105,478
Ensembl chrNW_004624804:8,093,346...8,106,193
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:28893950) MGI PMID:28893950 NCBI chrNW_004624817:8,103,065...8,104,435
Ensembl chrNW_004624817:8,103,065...8,104,420
JBrowse link
G Tfeb transcription factor EB involved_in ISO (PMID:9806910) UniProt PMID:9806910 NCBI chrNW_004624754:17,321,179...17,358,402
Ensembl chrNW_004624754:17,321,162...17,358,524
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955
JBrowse link
G Ttpa alpha tocopherol transfer protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624744:28,713,596...28,738,435
Ensembl chrNW_004624744:28,713,320...28,739,539
JBrowse link
embryonic placenta morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1c cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (PMID:19276117) MGI PMID:19276117 NCBI chrNW_004624767:15,642,991...15,645,648
Ensembl chrNW_004624767:15,642,012...15,645,664
JBrowse link
G Igf2 insulin like growth factor 2 involved_in ISO (PMID:28522536) UniProt PMID:28522536 NCBI chrNW_004624767:14,969,977...14,997,577
Ensembl chrNW_004624767:14,969,866...14,979,026
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:20133625) MGI PMID:20133625 NCBI chrNW_004624730:74,187,981...74,277,857
Ensembl chrNW_004624730:74,187,995...74,277,200
JBrowse link
G Trim28 tripartite motif containing 28 acts_upstream_of_or_within ISO (PMID:22110054) MGI PMID:22110054 NCBI chrNW_004624832:49,324...56,113 JBrowse link
G Vcam1 vascular cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:7530222) MGI PMID:7530222 NCBI chrNW_004624857:3,606,573...3,625,991
Ensembl chrNW_004624857:3,606,431...3,627,063
JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO (PMID:11543617) MGI PMID:11543617 NCBI chrNW_004624752:3,818,073...3,856,602
Ensembl chrNW_004624752:3,818,025...3,857,027
JBrowse link
embryonic process involved in female pregnancy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl4 acyl-CoA synthetase long chain family member 4 acts_upstream_of_or_within ISO (PMID:11409893) MGI PMID:11409893 NCBI chrNW_004624803:6,272,954...6,372,815
Ensembl chrNW_004624803:6,336,964...6,372,815
JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:16579983) MGI PMID:16579983 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536
JBrowse link
G Emp2 epithelial membrane protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624824:7,881,258...7,915,010
Ensembl chrNW_004624824:7,879,425...7,915,472
JBrowse link
G Hsf1 heat shock transcription factor 1 acts_upstream_of_or_within ISO (PMID:10545106) MGI PMID:10545106 NCBI chrNW_004624735:12,536,818...12,562,643
Ensembl chrNW_004624735:12,537,128...12,562,644
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO (PMID:10022836) MGI PMID:10022836 NCBI chrNW_004624901:402,969...404,741
Ensembl chrNW_004624901:403,235...404,269
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11456449) MGI PMID:11456449 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624904:1,475,664...1,507,588 JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624787:11,144,581...11,193,520 JBrowse link
G Tle6 TLE family member 6, subcortical maternal complex member involved_in ISO (PMID:26537248) UniProt PMID:26537248 NCBI chrNW_004624828:6,149,869...6,157,875 JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (PMID:19754878) MGI PMID:19754878 NCBI chrNW_004624812:107,632...203,791
Ensembl chrNW_004624812:109,405...203,519
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (PMID:20579985) DFLAT PMID:20579985 NCBI chrNW_004624772:9,579,488...9,658,881 JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) DFLAT PMID:20579985 NCBI chrNW_004624765:19,912,623...20,105,016
Ensembl chrNW_004624765:19,923,297...20,042,840
JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (PMID:18094249) UniProt PMID:18094249 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19653321) MGI PMID:19653321 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Prox1 prospero homeobox 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624771:19,188,543...19,238,621
Ensembl chrNW_004624771:19,196,366...19,233,338
JBrowse link
G Prox2 prospero homeobox 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624734:26,827,294...26,850,664
Ensembl chrNW_004624734:26,840,944...26,850,360
JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:10469643) BHF-UCL PMID:10469643 NCBI chrNW_004624737:4,795,054...4,800,830
Ensembl chrNW_004624737:4,791,628...4,800,989
JBrowse link
embryonic skeletal joint development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:21185280) MGI PMID:21185280 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:21262216) BHF-UCL PMID:21262216 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437
JBrowse link
G Slc2a10 solute carrier family 2 member 10 acts_upstream_of_or_within ISO (PMID:18565096) ARUK-UCL PMID:18565096 NCBI chrNW_004624790:7,967,398...7,982,312
Ensembl chrNW_004624790:7,966,694...7,982,367
JBrowse link
embryonic skeletal joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO MGI MGI:48782 NCBI chrNW_004624913:1,139,165...1,195,477
Ensembl chrNW_004624913:1,139,165...1,195,230
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9664686) MGI PMID:9664686 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:9664686) MGI PMID:9664686 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in ISO (PMID:16752401) BHF-UCL PMID:16752401 NCBI chrNW_004624816:4,273,969...4,304,519
Ensembl chrNW_004624816:4,274,219...4,304,513
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20978074) MGI
UniProt
PMID:20978074 GO_REF:0000117 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950
JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20978074) MGI
UniProt
PMID:20978074 GO_REF:0000117 NCBI chrNW_004624904:2,027,792...2,030,148
Ensembl chrNW_004624904:2,027,993...2,030,148
JBrowse link
G Hyal1 hyaluronidase 1 acts_upstream_of_or_within ISO (PMID:18772348) MGI PMID:18772348 NCBI chrNW_004624730:4,161,204...4,165,554
Ensembl chrNW_004624730:4,160,557...4,165,589
JBrowse link
G Nog noggin involved_in ISO (PMID:16151340) BHF-UCL PMID:16151340 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:21262216) BHF-UCL PMID:21262216 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437
JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:18514492) MGI PMID:18514492 NCBI chrNW_004624730:35,826,631...35,836,141
Ensembl chrNW_004624730:35,825,922...35,835,756
JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:21185280) MGI PMID:21185280 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:21262216) BHF-UCL PMID:21262216 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437
JBrowse link
embryonic skeletal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within ISO (PMID:7885474) MGI PMID:7885474 NCBI chrNW_004624866:539,967...619,575
Ensembl chrNW_004624866:539,894...620,302
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO (PMID:11290297) MGI PMID:11290297 NCBI chrNW_004624796:6,277,201...6,282,830
Ensembl chrNW_004624796:6,274,561...6,282,984
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:16712836) MGI PMID:16712836 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Cdk20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (PMID:28817564) MGI PMID:28817564 NCBI chrNW_004624868:4,225,779...4,248,252
Ensembl chrNW_004624868:4,241,976...4,248,196
JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in ISO (PMID:18553566) UniProt PMID:18553566 NCBI chrNW_004624795:6,167,504...6,183,208
Ensembl chrNW_004624795:6,168,797...6,183,071
JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISO (PMID:14966286) UniProt PMID:14966286 NCBI chrNW_004624766:21,799,282...21,832,267
Ensembl chrNW_004624766:21,799,119...21,833,631
JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:19247431) MGI PMID:19247431 NCBI chrNW_004624734:3,363,084...3,372,790
Ensembl chrNW_004624734:3,363,001...3,372,694
JBrowse link
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624787:9,514,170...9,519,309
Ensembl chrNW_004624787:9,514,573...9,519,724
JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:9187081) MGI PMID:9187081 NCBI chrNW_004624787:9,528,942...9,532,252
Ensembl chrNW_004624787:9,530,034...9,533,109
JBrowse link
G Ednra endothelin receptor type A involved_in ISO (PMID:19017795) MGI PMID:19017795 NCBI chrNW_004624853:6,298,406...6,362,353
Ensembl chrNW_004624853:6,302,751...6,360,089
JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624776:16,022,118...16,055,413
Ensembl chrNW_004624776:16,019,835...16,055,498
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504941) MGI PMID:17504941 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in ISO (PMID:19017795) MGI PMID:19017795 NCBI chrNW_004624769:5,035,669...5,038,333
Ensembl chrNW_004624769:5,033,932...5,038,343
JBrowse link
G Hoxa2 homeobox A2 involved_in ISO (PMID:25889273) MGI PMID:25889273 NCBI chrNW_004624739:3,501,671...3,504,939
Ensembl chrNW_004624739:3,501,817...3,504,750
JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO (PMID:7913519) MGI PMID:7913519 NCBI chrNW_004624739:3,453,358...3,498,061
Ensembl chrNW_004624739:3,478,406...3,498,333
JBrowse link
G Hoxa5 homeobox A5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17626057) UniProt
MGI
PMID:17626057 GO_REF:0000117 NCBI chrNW_004624739:3,461,779...3,464,543
Ensembl chrNW_004624739:3,461,800...3,464,785
JBrowse link
G Hoxa6 homeobox A6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:17626057) MGI
UniProt
PMID:17626057 GO_REF:0000117 NCBI chrNW_004624739:3,455,513...3,460,130
Ensembl chrNW_004624739:3,455,606...3,460,102
JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within ISO (PMID:8625797)
(PMID:9013929)
(PMID:17626057)
MGI PMID:8625797 PMID:9013929 PMID:17626057 NCBI chrNW_004624739:3,440,328...3,443,362
Ensembl chrNW_004624739:3,439,217...3,443,449
JBrowse link
G Hoxb5 homeobox B5 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:17626057) MGI
UniProt
PMID:17626057 GO_REF:0000117 NCBI chrNW_004624795:5,089,259...5,092,770
Ensembl chrNW_004624795:5,089,323...5,092,764
JBrowse link
G Hoxb6 homeobox B6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:5,093,911...5,102,401
Ensembl chrNW_004624795:5,093,858...5,102,868
JBrowse link
G Hoxb9 homeobox B9 acts_upstream_of_or_within ISO (PMID:9013929)
(PMID:10885747)
(PMID:17626057)
MGI PMID:9013929 PMID:10885747 PMID:17626057 NCBI chrNW_004624795:5,118,483...5,123,294
Ensembl chrNW_004624795:5,118,493...5,123,270
JBrowse link
G Hoxc5 homeobox C5 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624904:2,086,437...2,091,542
Ensembl chrNW_004624904:2,086,531...2,090,428
JBrowse link
G Hoxc6 homeobox C6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:17626057) MGI
UniProt
PMID:17626057 GO_REF:0000117 NCBI chrNW_004624904:2,071,285...2,084,556
Ensembl chrNW_004624904:2,080,826...2,084,563
JBrowse link
G Hoxc9 homeobox C9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624904:2,054,768...2,058,556
Ensembl chrNW_004624904:2,054,386...2,058,539
JBrowse link
G Hoxd1 homeobox D1 acts_upstream_of_or_within ISO (PMID:11511348) MGI PMID:11511348 NCBI chrNW_004624787:13,325,232...13,327,400
Ensembl chrNW_004624787:13,325,276...13,326,824
JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within ISO (PMID:8625797)
(PMID:17626057)
MGI PMID:8625797 PMID:17626057 NCBI chrNW_004624787:13,263,020...13,265,538
Ensembl chrNW_004624787:13,249,946...13,265,627
JBrowse link
G Hsd17b7 hydroxysteroid 17-beta dehydrogenase 7 acts_upstream_of_or_within ISO (PMID:21515572) MGI PMID:21515572 NCBI chrNW_004624826:1,260,133...1,287,565
Ensembl chrNW_004624826:1,260,223...1,283,741
JBrowse link
G Kiaa1217 KIAA1217 ortholog involved_in ISO (PMID:16204209) UniProt PMID:16204209 NCBI chrNW_004624796:4,340,228...4,761,036
Ensembl chrNW_004624796:4,341,393...4,606,108
JBrowse link
G Mbtd1 mbt domain containing 1 acts_upstream_of_or_within ISO (PMID:21252303) MGI PMID:21252303 NCBI chrNW_004624795:6,900,281...6,966,249
Ensembl chrNW_004624795:6,900,281...6,960,903
JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:21045211) MGI PMID:21045211 NCBI chrNW_004624871:50,688...63,772
Ensembl chrNW_004624871:51,122...63,742
JBrowse link
G Mosmo modulator of smoothened acts_upstream_of_or_within ISO (PMID:34486668) MGI PMID:34486668 NCBI chrNW_004624782:7,455,770...7,513,931 JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO (PMID:10449756)
(PMID:10572046)
MGI PMID:10449756 PMID:10572046 NCBI chrNW_004624755:18,070,706...18,073,847
Ensembl chrNW_004624755:18,070,740...18,072,883
JBrowse link
G Nog noggin involved_in ISO (PMID:10080184) BHF-UCL PMID:10080184 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO (PMID:8631261) MGI PMID:8631261 NCBI chrNW_004624764:3,853,055...3,951,182
Ensembl chrNW_004624764:3,853,055...3,947,521
JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO (PMID:11566859) MGI PMID:11566859 NCBI chrNW_004624826:2,944,272...3,250,957
Ensembl chrNW_004624826:2,945,004...3,215,110
JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within ISO (PMID:11290297) MGI PMID:11290297 NCBI chrNW_004624795:3,942,868...3,952,325
Ensembl chrNW_004624795:3,947,885...3,951,122
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639) BHF-UCL PMID:18519639 NCBI chrNW_004624811:3,453,218...3,862,970 JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:15994349) BHF-UCL PMID:15994349 NCBI chrNW_004624737:4,795,054...4,800,830
Ensembl chrNW_004624737:4,791,628...4,800,989
JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:7743923) UniProt PMID:7743923 NCBI chrNW_004624735:12,579,963...12,583,128
Ensembl chrNW_004624735:12,579,956...12,581,736
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:17504941) MGI PMID:17504941 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Slc35d1 solute carrier family 35 member D1 acts_upstream_of_or_within ISO (PMID:17952091) MGI PMID:17952091 NCBI chrNW_004624742:28,008,637...28,039,246
Ensembl chrNW_004624742:28,008,656...28,037,921
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624904:1,475,664...1,507,588 JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624787:11,144,581...11,193,520 JBrowse link
G Sulf1 sulfatase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624744:21,484,934...21,685,476
Ensembl chrNW_004624744:21,484,834...21,685,577
JBrowse link
G Sulf2 sulfatase 2 involved_in IEA Ensembl
UniProt
GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004624790:7,129,863...7,228,406
Ensembl chrNW_004624790:7,129,815...7,228,454
JBrowse link
G Tapt1 transmembrane anterior posterior transformation 1 acts_upstream_of_or_within ISO (PMID:17151244) MGI PMID:17151244 NCBI chrNW_004624755:15,639,200...15,698,828
Ensembl chrNW_004624755:15,639,136...15,699,006
JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (PMID:8293872) MGI PMID:8293872 NCBI chrNW_004624785:13,058,520...13,066,607
Ensembl chrNW_004624785:13,058,444...13,066,719
JBrowse link
G Ucma upper zone of growth plate and cartilage matrix associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624805:5,775,019...5,781,957
Ensembl chrNW_004624805:5,775,019...5,781,957
JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:9757009) UniProt PMID:9757009 NCBI chrNW_004624817:931,686...952,474
Ensembl chrNW_004624817:932,970...952,326
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (PMID:19918918) BHF-UCL PMID:19918918 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
G Xylt1 xylosyltransferase 1 involved_in ISO (PMID:24161523) UniProt PMID:24161523 NCBI chrNW_004624782:1,462,888...1,763,267
Ensembl chrNW_004624782:1,462,916...1,757,206
JBrowse link
embryonic skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO (PMID:11641221), (PMID:15728667) MGI PMID:11641221 PMID:15728667 NCBI chrNW_004624772:5,826,823...5,836,853
Ensembl chrNW_004624772:5,826,600...5,836,853
JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:15728667)
(PMID:11641221)
(PMID:9847249)
MGI PMID:9847249 PMID:11641221 PMID:15728667 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323
JBrowse link
G Asxl2 ASXL transcriptional regulator 2 acts_upstream_of_or_within ISO (PMID:19270745) MGI PMID:19270745 NCBI chrNW_004624738:7,958,610...8,100,223
Ensembl chrNW_004624738:7,603,252...8,100,369
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO (PMID:11290297) MGI PMID:11290297 NCBI chrNW_004624796:6,277,201...6,282,830
Ensembl chrNW_004624796:6,274,561...6,282,984
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:16712836) MGI PMID:16712836 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (PMID:16079159) MGI PMID:16079159 NCBI chrNW_004624750:4,227,229...4,391,177
Ensembl chrNW_004624750:4,223,561...4,391,218
JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO (PMID:4100752) MGI PMID:4100752 NCBI chrNW_004624857:5,817,472...6,176,421
Ensembl chrNW_004624857:5,817,475...6,029,107
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within ISO (PMID:11238884) MGI PMID:11238884 NCBI chrNW_004624730:62,001,547...62,223,098
Ensembl chrNW_004624730:62,002,280...62,223,319
JBrowse link
G Dscaml1 DS cell adhesion molecule like 1 involved_in ISO (PMID:12051741) UniProt PMID:12051741 NCBI chrNW_004624784:12,853,870...13,183,224
Ensembl chrNW_004624784:12,854,420...13,183,132
JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in ISO (PMID:23910462) GO_Central PMID:23910462 NCBI chrNW_004624800:213,589...301,066
Ensembl chrNW_004624800:209,737...300,606
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:10471511) MGI PMID:10471511 NCBI chrNW_004624744:19,782,174...19,975,496
Ensembl chrNW_004624744:19,782,790...19,977,335
JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO (PMID:23187127) MGI PMID:23187127 NCBI chrNW_004624771:18,239,437...18,270,408 JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9409679) MGI PMID:9409679 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085
JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in ISO (PMID:19767740), (PMID:21935430), (PMID:23806618) UniProt PMID:19767740 PMID:21935430 PMID:23806618 NCBI chrNW_004624832:4,509,118...4,514,180
Ensembl chrNW_004624832:4,509,505...4,514,183
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:15728667) MGI PMID:15728667 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO (PMID:7555718)
(PMID:7555726)
MGI PMID:7555718 PMID:7555726 NCBI chrNW_004624734:7,367,030...7,369,081
Ensembl chrNW_004624734:7,367,277...7,368,817
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (PMID:15634706) MGI PMID:15634706 NCBI chrNW_004624739:3,501,671...3,504,939
Ensembl chrNW_004624739:3,501,817...3,504,750
JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9441667) MGI
TreeGrafter
PMID:9441667 GO_REF:0000118 NCBI chrNW_004624739:3,453,358...3,498,061
Ensembl chrNW_004624739:3,478,406...3,498,333
JBrowse link
G Hoxa4 homeobox A4 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:7628700)
(PMID:7918106)
MGI
TreeGrafter
PMID:7628700 PMID:7918106 GO_REF:0000118 NCBI chrNW_004624739:3,474,868...3,477,190
Ensembl chrNW_004624739:3,474,990...3,476,486
JBrowse link
G Hoxa5 homeobox A5 acts_upstream_of_or_within ISO (PMID:7901120), (PMID:9603431)
(PMID:17417799)
MGI PMID:7901120 PMID:9603431 PMID:17417799 NCBI chrNW_004624739:3,461,779...3,464,543
Ensembl chrNW_004624739:3,461,800...3,464,785
JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9784603) MGI
UniProt
PMID:9784603 GO_REF:0000117 NCBI chrNW_004624739:3,448,982...3,451,985
Ensembl chrNW_004624739:3,448,199...3,452,717
JBrowse link
G Hoxa9 homeobox A9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624739:3,440,328...3,443,362
Ensembl chrNW_004624739:3,439,217...3,443,449
JBrowse link
G Hoxb1 homeobox B1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:5,032,495...5,033,789
Ensembl chrNW_004624795:5,032,495...5,033,789
JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO (PMID:10885747) MGI PMID:10885747 NCBI chrNW_004624795:5,043,110...5,045,414
Ensembl chrNW_004624795:5,042,991...5,046,030
JBrowse link
G Hoxb3 homeobox B3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10885747)
(PMID:9441667)
MGI
TreeGrafter
PMID:9441667 PMID:10885747 GO_REF:0000118 NCBI chrNW_004624795:5,050,272...5,072,614
Ensembl chrNW_004624795:5,048,920...5,068,708
JBrowse link
G Hoxb4 homeobox B4 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10885747)
(PMID:7628700)
MGI
TreeGrafter
PMID:7628700 PMID:10885747 GO_REF:0000118 NCBI chrNW_004624795:5,074,147...5,077,714
Ensembl chrNW_004624795:5,073,119...5,078,419
JBrowse link
G Hoxb5 homeobox B5 acts_upstream_of_or_within ISO (PMID:7828847)
(PMID:10885747)
MGI PMID:7828847 PMID:10885747 NCBI chrNW_004624795:5,089,259...5,092,770
Ensembl chrNW_004624795:5,089,323...5,092,764
JBrowse link
G Hoxb6 homeobox B6 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624795:5,093,911...5,102,401
Ensembl chrNW_004624795:5,093,858...5,102,868
JBrowse link
G Hoxb7 homeobox B7 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9784603)
(PMID:10885747)
MGI
UniProt
PMID:9784603 PMID:10885747 GO_REF:0000117 NCBI chrNW_004624795:5,105,032...5,109,379
Ensembl chrNW_004624795:5,105,622...5,108,367
JBrowse link
G Hoxb8 homeobox B8 acts_upstream_of_or_within ISO (PMID:10885747)
(PMID:10559485)
MGI PMID:10559485 PMID:10885747 NCBI chrNW_004624842:4,483,367...4,484,996
Ensembl chrNW_004624842:4,483,367...4,484,996
JBrowse link
G Hoxb9 homeobox B9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:5,118,483...5,123,294
Ensembl chrNW_004624795:5,118,493...5,123,270
JBrowse link
G Hoxc4 homeobox C4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624904:2,104,504...2,109,729
Ensembl chrNW_004624904:2,092,055...2,109,979
JBrowse link
G Hoxc5 homeobox C5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624904:2,086,437...2,091,542
Ensembl chrNW_004624904:2,086,531...2,090,428
JBrowse link
G Hoxc9 homeobox C9 involved_in
acts_upstream_of_or_within
IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624904:2,054,768...2,058,556
Ensembl chrNW_004624904:2,054,386...2,058,539
JBrowse link
G Hoxd10 homeobox D10 acts_upstream_of_or_within ISO (PMID:10642795) MGI PMID:10642795 NCBI chrNW_004624787:13,256,600...13,260,664
Ensembl chrNW_004624787:13,257,387...13,262,685
JBrowse link
G Hoxd3 homeobox D3 acts_upstream_of_or_within
involved_in
IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624787:13,308,406...13,312,770
Ensembl chrNW_004624787:13,292,936...13,314,622
JBrowse link
G Hoxd4 homeobox D4 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:7750651)
(PMID:7628700)
MGI
TreeGrafter
PMID:7628700 PMID:7750651 GO_REF:0000118 NCBI chrNW_004624787:13,290,250...13,296,315
Ensembl chrNW_004624787:13,290,703...13,296,311
JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10642795) MGI
TreeGrafter
PMID:10642795 GO_REF:0000118 NCBI chrNW_004624787:13,263,020...13,265,538
Ensembl chrNW_004624787:13,249,946...13,265,627
JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10579729) MGI PMID:10579729 NCBI chrNW_004624764:6,639,152...6,736,161
Ensembl chrNW_004624764:6,640,087...6,708,130
JBrowse link
G LOC101723938 ALX homeobox protein 1 involved_in
acts_upstream_of_or_within
IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624837:4,222,679...4,473,532
Ensembl chrNW_004624837:4,234,677...4,414,783
Ensembl chrNW_004624837:4,234,677...4,414,783
JBrowse link
G Mdfi MyoD family inhibitor acts_upstream_of_or_within ISO (PMID:9799236) MGI PMID:9799236 NCBI chrNW_004624754:17,377,369...17,389,349
Ensembl chrNW_004624754:17,375,714...17,387,919
JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO (PMID:17420000) MGI PMID:17420000 NCBI chrNW_004624743:8,072,871...8,235,174
Ensembl chrNW_004624743:8,072,673...8,235,252
JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISS CAFA GO_REF:0000024 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091
JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO (PMID:17927973) MGI PMID:17927973 NCBI chrNW_004624767:21,579,084...21,585,380
Ensembl chrNW_004624767:21,579,103...21,585,373
JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chrNW_004624865:780,163...785,776 JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624837:33,735...36,052
Ensembl chrNW_004624837:33,864...35,837
JBrowse link
G Osr2 odd-skipped related transciption factor 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437
JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within ISO (PMID:11290297) MGI PMID:11290297 NCBI chrNW_004624795:3,942,868...3,952,325
Ensembl chrNW_004624795:3,947,885...3,951,122
JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO (PMID:19412548) MGI PMID:19412548 NCBI chrNW_004624761:27,029,420...27,186,537
Ensembl chrNW_004624761:27,030,615...27,175,960
JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO (PMID:11532916), (PMID:9729491), (PMID:9876178)
(PMID:7758948)
MGI PMID:7758948 PMID:9729491 PMID:9876178 PMID:11532916 NCBI chrNW_004624826:8,361,039...8,435,488
Ensembl chrNW_004624826:8,361,033...8,435,656
JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:11532916), (PMID:9729491), (PMID:9876178) MGI PMID:9729491 PMID:9876178 PMID:11532916 NCBI chrNW_004624760:5,656,456...5,684,383
Ensembl chrNW_004624760:5,656,521...5,692,934
JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO (PMID:16751105)
(PMID:16960803)
MGI PMID:16751105 PMID:16960803 NCBI chrNW_004624889:1,321,323...1,466,368
Ensembl chrNW_004624889:1,321,345...1,466,319
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671
JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO (PMID:15634706) MGI PMID:15634706 NCBI chrNW_004624738:26,442,935...26,447,100
Ensembl chrNW_004624738:26,442,965...26,446,942
JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO (PMID:15788460) MGI PMID:15788460 NCBI chrNW_004624734:40,397,276...40,409,951
Ensembl chrNW_004624734:40,397,559...40,409,997
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (PMID:15254231) UniProt PMID:15254231 NCBI chrNW_004624846:4,043,010...4,046,660
Ensembl chrNW_004624846:4,044,893...4,046,248
JBrowse link
G Tbx15 T-box transcription factor 15 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624772:14,483,951...14,611,602
Ensembl chrNW_004624772:14,482,948...14,611,452
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809
JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO (PMID:16818445) MGI PMID:16818445 NCBI chrNW_004624937:776,810...797,365
Ensembl chrNW_004624937:776,810...797,310
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:9389660) MGI PMID:9389660 NCBI chrNW_004624805:3,964,448...4,044,546
Ensembl chrNW_004624805:3,964,450...4,042,527
JBrowse link
embryonic viscerocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (PMID:16079159) MGI PMID:16079159 NCBI chrNW_004624750:4,227,229...4,391,177
Ensembl chrNW_004624750:4,223,561...4,391,218
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9409679) MGI PMID:9409679 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (PMID:16221728) MGI PMID:16221728 NCBI chrNW_004624739:3,501,671...3,504,939
Ensembl chrNW_004624739:3,501,817...3,504,750
JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (PMID:14695376) UniProt PMID:14695376 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033
JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO (PMID:17420000) MGI PMID:17420000 NCBI chrNW_004624743:8,072,871...8,235,174
Ensembl chrNW_004624743:8,072,673...8,235,252
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in ISO (PMID:23267094) BHF-UCL PMID:23267094 NCBI chrNW_004624785:7,129,969...7,328,331
Ensembl chrNW_004624785:7,129,859...7,328,153
JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624774:9,758,459...9,821,309
Ensembl chrNW_004624774:9,758,809...9,821,309
JBrowse link
G Nipbl NIPBL cohesin loading factor acts_upstream_of_or_within
involved_in
IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISO (PMID:14585638) UniProt PMID:14585638 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098
JBrowse link
endoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982
JBrowse link
G Dusp2 dual specificity phosphatase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624749:2,258,317...2,260,542
Ensembl chrNW_004624749:2,258,356...2,260,455
JBrowse link
G Dusp4 dual specificity phosphatase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624839:5,870,274...5,887,741 JBrowse link
G Dusp5 dual specificity phosphatase 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:35,785,133...35,798,201
Ensembl chrNW_004624737:35,784,852...35,798,382
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within
involved_in
ISO (PMID:21245162), (PMID:21822279)
(PMID:18171685)
MGI
UniProt
PMID:18171685 PMID:21245162 PMID:21822279 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:8582296) MGI PMID:8582296 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:15355796) MGI PMID:15355796 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033
JBrowse link
G LOC101701425 dual specificity protein phosphatase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:14,435,569...14,455,871
Ensembl chrNW_004624786:14,452,507...14,457,341
JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:17151016) MGI
TreeGrafter
PMID:17151016 GO_REF:0000118 NCBI chrNW_004624807:322,723...325,089
Ensembl chrNW_004624807:322,723...326,149
JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:18462699) MGI PMID:18462699 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078
JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
G Sox7 SRY-box transcription factor 7 involved_in ISO (PMID:18682240) UniProt PMID:18682240 NCBI chrNW_004624758:24,556,436...24,562,204
Ensembl chrNW_004624758:24,556,010...24,562,213
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (PMID:22187428) MGI PMID:22187428 NCBI chrNW_004624801:7,552,644...7,644,755
Ensembl chrNW_004624801:7,552,030...7,638,834
JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd3 bromodomain containing 3 involved_in ISO (PMID:32895492) UniProt PMID:32895492 NCBI chrNW_004624760:2,220,019...2,247,322
Ensembl chrNW_004624760:2,221,472...2,247,388
JBrowse link
G Col11a1 collagen type XI alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624857:5,817,472...6,176,421
Ensembl chrNW_004624857:5,817,475...6,029,107
JBrowse link
G Col12a1 collagen type XII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624819:2,085,654...2,200,843
Ensembl chrNW_004624819:2,086,512...2,197,951
JBrowse link
G Col4a2 collagen type IV alpha 2 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624793:2,201,815...2,325,002
Ensembl chrNW_004624793:2,202,244...2,324,507
JBrowse link
G Col6a1 collagen type VI alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624745:31,125,136...31,140,126
Ensembl chrNW_004624745:31,125,265...31,139,318
JBrowse link
G Col7a1 collagen type VII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624730:2,569,510...2,599,959 JBrowse link
G Col8a1 collagen type VIII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624789:12,962,144...13,130,492 JBrowse link
G Dab2 DAB adaptor protein 2 acts_upstream_of_or_within ISO (PMID:12413896) MGI PMID:12413896 NCBI chrNW_004624759:15,459,436...15,520,225
Ensembl chrNW_004624759:15,459,288...15,520,924
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (PMID:18403408) MGI PMID:18403408 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982
JBrowse link
G Fn1 fibronectin 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624765:707,872...775,056
Ensembl chrNW_004624765:707,755...775,056
JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO (PMID:9832509) MGI PMID:9832509 NCBI chrNW_004624770:9,772,818...9,799,837
Ensembl chrNW_004624770:9,772,818...9,798,259
JBrowse link
G Grb2 growth factor receptor bound protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:5,143,239...5,219,136
Ensembl chrNW_004624801:5,143,141...5,219,244
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO (PMID:17624332) UniProt PMID:17624332 NCBI chrNW_004624802:2,337,344...2,468,757
Ensembl chrNW_004624802:2,337,464...2,467,990
JBrowse link
G Hsbp1 heat shock factor binding protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:3,686,523...3,690,585
Ensembl chrNW_004624746:3,685,189...3,690,642
JBrowse link
G Inhba inhibin subunit beta A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624740:19,458,835...19,482,570
Ensembl chrNW_004624740:19,464,289...19,482,888
JBrowse link
G Itga4 integrin subunit alpha 4 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624844:3,264,794...3,353,355
Ensembl chrNW_004624844:3,265,110...3,354,087
JBrowse link
G Itga5 integrin subunit alpha 5 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624904:2,418,140...2,439,945
Ensembl chrNW_004624904:2,417,269...2,440,087
JBrowse link
G Itga7 integrin subunit alpha 7 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624802:12,303,969...12,332,737
Ensembl chrNW_004624802:12,312,679...12,336,587
JBrowse link
G Itgav integrin subunit alpha V involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624899:3,235,434...3,292,584
Ensembl chrNW_004624899:3,239,112...3,291,586
JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624745:30,452,576...30,479,036
Ensembl chrNW_004624745:30,452,576...30,470,611
JBrowse link
G Itgb5 integrin subunit beta 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624731:804,272...914,204
Ensembl chrNW_004624731:802,854...914,167
JBrowse link
G Lama3 laminin subunit alpha 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624770:8,237,085...8,482,770 JBrowse link
G Lamb1 laminin subunit beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624739:21,771,617...21,843,888
Ensembl chrNW_004624739:21,771,226...21,843,884
JBrowse link
G Lamb3 laminin subunit beta 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624807:2,320,168...2,378,349 JBrowse link
G LOC101702728 collagen alpha-1(XII) chain-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624819:6,820,950...6,848,249 JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 acts_upstream_of ISO (PMID:16908534) MGI PMID:16908534 NCBI chrNW_004624781:6,222,365...6,285,398
Ensembl chrNW_004624781:6,222,365...6,285,531
JBrowse link
G Mixl1 Mix paired-like homeobox involved_in ISO (PMID:19038793) BHF-UCL PMID:19038793 NCBI chrNW_004624807:322,723...325,089
Ensembl chrNW_004624807:322,723...326,149
JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624820:9,667,371...9,677,488
Ensembl chrNW_004624820:9,667,262...9,677,774
JBrowse link
G Mmp15 matrix metallopeptidase 15 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624746:28,128,687...28,147,964
Ensembl chrNW_004624746:28,130,128...28,147,381
JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624757:1,450,680...1,479,160
Ensembl chrNW_004624757:1,448,698...1,479,255
JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624878:124,396...174,584
Ensembl chrNW_004624878:164,171...175,654
JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624790:8,584,399...8,591,763
Ensembl chrNW_004624790:8,583,457...8,591,713
JBrowse link
G Myh9 myosin heavy chain 9 involved_in ISO (PMID:15292239) MGI PMID:15292239 NCBI chrNW_004624752:11,327,881...11,414,037
Ensembl chrNW_004624752:11,327,877...11,413,669
JBrowse link
G Nodal nodal growth differentiation factor involved_in ISO (PMID:21741376) BHF-UCL PMID:21741376 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Nr0b1 nuclear receptor subfamily 0 group B member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:25,759,976...25,769,543
Ensembl chrNW_004624762:25,764,452...25,769,487
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:25242323) UniProt PMID:25242323 NCBI chrNW_004624730:74,187,981...74,277,857
Ensembl chrNW_004624730:74,187,995...74,277,200
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of ISO (PMID:17940068) MGI PMID:17940068 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
G Vtn vitronectin involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624786:970,288...973,344
Ensembl chrNW_004624786:966,452...973,337
JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in ISO (PMID:19345177) UniProt PMID:19345177 NCBI chrNW_004624814:298,015...460,314
Ensembl chrNW_004624814:299,444...460,391
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Ctr9 CTR9 component of Paf1/RNA polymerase II complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:2,823,561...2,851,742
Ensembl chrNW_004624766:2,823,229...2,851,742
JBrowse link
G Leo1 LEO1 component of Paf1/RNA polymerase II complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624731:8,467,914...8,485,978
Ensembl chrNW_004624731:8,467,877...8,485,851
JBrowse link
G Paf1 PAF1 component of Paf1/RNA polymerase II complex involved_in ISO (PMID:19345177) UniProt PMID:19345177 NCBI chrNW_004624794:12,719,819...12,725,109
Ensembl chrNW_004624794:12,719,861...12,725,122
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
G Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:19345177) UniProt PMID:19345177 NCBI chrNW_004624804:8,588,751...8,649,180 JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO (PMID:20308546) MGI PMID:20308546 NCBI chrNW_004624770:9,772,818...9,799,837
Ensembl chrNW_004624770:9,772,818...9,798,259
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:20308546) MGI PMID:20308546 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21245162) MGI
TreeGrafter
PMID:21245162 GO_REF:0000118 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:18635606) MGI PMID:18635606 NCBI chrNW_004624871:4,662,104...4,713,125
Ensembl chrNW_004624871:4,661,669...4,712,960
JBrowse link
G Nanog Nanog homeobox acts_upstream_of_or_within ISO (PMID:20713518) MGI PMID:20713518 NCBI chrNW_004624860:5,026,203...5,037,219 JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:20713518) MGI PMID:20713518 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (PMID:21305474) BHF-UCL PMID:21305474 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:21245162) MGI PMID:21245162 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871
JBrowse link
epiboly involved in gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Megf8 multiple EGF like domains 8 involved_in ISO (PMID:23063620) UniProt PMID:23063620 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091
JBrowse link
epithelial cell morphogenesis involved in placental branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:25758223) MGI PMID:25758223 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358
JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type 2 acts_upstream_of_or_within ISO (PMID:19592578) MGI PMID:19592578 NCBI chrNW_004624794:11,738,137...11,765,579
Ensembl chrNW_004624794:11,738,487...11,769,117
JBrowse link
G St14 ST14 transmembrane serine protease matriptase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624812:4,584,043...4,620,410
Ensembl chrNW_004624812:4,583,946...4,620,547
JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO (PMID:18606138) MGI PMID:18606138 NCBI chrNW_004624763:19,917,199...19,925,824
Ensembl chrNW_004624763:19,917,169...19,925,896
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624794:841,302...867,717
Ensembl chrNW_004624794:841,247...867,708
JBrowse link
establishment or maintenance of polarity of embryonic epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Llgl2 LLGL scribble cell polarity complex component 2 acts_upstream_of_or_within ISO (PMID:21606200) MGI PMID:21606200 NCBI chrNW_004624801:5,329,988...5,376,368
Ensembl chrNW_004624801:5,329,916...5,370,345
JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO (PMID:19060336) MGI PMID:19060336 NCBI chrNW_004624752:3,818,073...3,856,602
Ensembl chrNW_004624752:3,818,025...3,857,027
JBrowse link
fetal process involved in parturition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tk1 thymidine kinase 1 ISO RGD PMID:7208144 RGD:2317233 NCBI chrNW_004624801:7,685,003...7,692,949
Ensembl chrNW_004624801:7,685,017...7,692,872
JBrowse link
floor plate development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cby1 chibby 1, beta catenin antagonist acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:9,467,636...9,485,085
Ensembl chrNW_004624752:9,469,766...9,485,175
JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chrNW_004624740:3,332,977...3,399,915 JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1 like acts_upstream_of_or_within ISO (PMID:29487109) MGI PMID:29487109 NCBI chrNW_004624730:14,568,625...14,619,673
Ensembl chrNW_004624730:14,568,382...14,619,272
JBrowse link
G Ferd3l Fer3 like bHLH transcription factor acts_upstream_of_or_within ISO (PMID:20460368) MGI PMID:20460368 NCBI chrNW_004624739:11,315,336...11,319,030
Ensembl chrNW_004624739:11,318,333...11,318,851
JBrowse link
G Foxb1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:12,182,728...12,185,228
Ensembl chrNW_004624781:12,183,444...12,185,185
JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004624859:5,510,442...5,572,122
Ensembl chrNW_004624859:5,510,384...5,572,228
JBrowse link
floor plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (PMID:28817564) MGI PMID:28817564 NCBI chrNW_004624868:4,225,779...4,248,252
Ensembl chrNW_004624868:4,241,976...4,248,196
JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO (PMID:23351563) MGI PMID:23351563 NCBI chrNW_004624824:1,299,426...1,352,019
Ensembl chrNW_004624824:1,300,137...1,351,129
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:9636069), (PMID:9655799) MGI PMID:9636069 PMID:9655799 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
floor plate morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759
JBrowse link
formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO (PMID:18448678) MGI PMID:18448678 NCBI chrNW_004624764:10,672,673...10,759,634
Ensembl chrNW_004624764:10,672,735...10,759,634
JBrowse link
G Atoh8 atonal bHLH transcription factor 8 involved_in ISO (PMID:18560595) UniProt PMID:18560595 NCBI chrNW_004624749:17,397,332...17,428,980
Ensembl chrNW_004624749:17,399,111...17,428,893
JBrowse link
G Kif16b kinesin family member 16B involved_in ISO (PMID:21238925) UniProt PMID:21238925 NCBI chrNW_004624741:17,424,335...17,750,531 JBrowse link
G Nodal nodal growth differentiation factor involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:7,929,997...8,004,235
Ensembl chrNW_004624732:7,929,583...8,005,072
JBrowse link
G Apln apelin involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624797:8,857,490...8,866,157
Ensembl chrNW_004624797:8,857,070...8,866,329
JBrowse link
G Aplnr apelin receptor involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624864:3,308,548...3,311,431
Ensembl chrNW_004624864:3,308,794...3,309,939
JBrowse link
G Arfrp1 ADP ribosylation factor related protein 1 acts_upstream_of_or_within ISO (PMID:11839814) MGI PMID:11839814 NCBI chrNW_004624741:29,346,678...29,356,199
Ensembl chrNW_004624741:29,346,684...29,355,739
JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO (PMID:18448678) MGI PMID:18448678 NCBI chrNW_004624764:10,672,673...10,759,634
Ensembl chrNW_004624764:10,672,735...10,759,634
JBrowse link
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within ISO (PMID:28911199) MGI PMID:28911199 NCBI chrNW_004624782:14,461,488...14,468,407
Ensembl chrNW_004624782:14,462,114...14,468,404
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (PMID:18241853) MGI PMID:18241853 NCBI chrNW_004624736:18,958,081...18,960,617
Ensembl chrNW_004624736:18,958,069...18,960,617
JBrowse link
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO (PMID:18241853) MGI PMID:18241853 NCBI chrNW_004624730:74,547,226...74,550,526 JBrowse link
G Cul3 cullin 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727
JBrowse link
G Dld dihydrolipoamide dehydrogenase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624739:21,842,897...21,873,334
Ensembl chrNW_004624739:21,846,733...21,873,700
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect
ISO (PMID:20080592)
(PMID:10926768)
MGI PMID:10926768 PMID:20080592 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804
JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO (PMID:7550343)
(PMID:7774020)
(PMID:7618107)
MGI PMID:7550343 PMID:7618107 PMID:7774020 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333
JBrowse link
G Lmbrd1 LMBR1 domain containing 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624753:27,283,570...27,423,118
Ensembl chrNW_004624753:27,283,871...27,375,897
JBrowse link
G LOC101713307 protein HIRA acts_upstream_of_or_within ISO (PMID:11884616) MGI PMID:11884616 NCBI chrNW_004624747:9...95,643 JBrowse link
G LOC101714063 RNA-binding protein 14 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:19,605,729...19,791,856 JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within ISO (PMID:12117810) MGI PMID:12117810 NCBI chrNW_004624807:322,723...325,089
Ensembl chrNW_004624807:322,723...326,149
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:14511481)
(PMID:11311163)
MGI PMID:11311163 PMID:14511481 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Nr4a3 nuclear receptor subfamily 4 group A member 3 involved_in ISO (PMID:13129926) UniProt PMID:13129926 NCBI chrNW_004624825:1,098,915...1,141,373
Ensembl chrNW_004624825:1,097,432...1,141,446
JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624958:181,325...185,620
Ensembl chrNW_004624958:181,273...185,620
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO (PMID:21069829) MGI PMID:21069829 NCBI chrNW_004624766:22,234,484...22,240,874
Ensembl chrNW_004624766:22,234,484...22,240,940
JBrowse link
G Rps6 ribosomal protein S6 acts_upstream_of_or_within ISO (PMID:17000767) MGI PMID:17000767 NCBI chrNW_004624736:23,332,556...23,336,234
Ensembl chrNW_004624736:23,328,002...23,336,140
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371
JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:20123909) MGI PMID:20123909 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:9799237) MGI PMID:9799237 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
G Syf2 SYF2 pre-mRNA splicing factor acts_upstream_of_or_within ISO (PMID:22448250) MGI PMID:22448250 NCBI chrNW_004624764:9,464,487...9,479,714
Ensembl chrNW_004624764:9,463,586...9,479,786
JBrowse link
G Tcf3 transcription factor 3 involved_in ISO (PMID:21828274) BHF-UCL PMID:21828274 NCBI chrNW_004624828:7,090,562...7,119,970
Ensembl chrNW_004624828:7,090,605...7,121,428
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 acts_upstream_of_or_within ISO (PMID:10030593) MGI PMID:10030593 NCBI chrNW_004624788:8,447,679...8,535,821
Ensembl chrNW_004624788:8,447,542...8,535,959
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:17000767) MGI PMID:17000767 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218
JBrowse link
G Txnrd1 thioredoxin reductase 1 acts_upstream_of_or_within ISO (PMID:17697936) MGI PMID:17697936 NCBI chrNW_004624750:4,444,318...4,536,384
Ensembl chrNW_004624750:4,443,915...4,510,380
JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:16397896) MGI PMID:16397896 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093
JBrowse link
gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:7,929,997...8,004,235
Ensembl chrNW_004624732:7,929,583...8,005,072
JBrowse link
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within ISO (PMID:10452853) MGI PMID:10452853 NCBI chrNW_004624866:539,967...619,575
Ensembl chrNW_004624866:539,894...620,302
JBrowse link
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:10452853) MGI PMID:10452853 NCBI chrNW_004624731:2,557,993...2,600,250
Ensembl chrNW_004624731:2,566,063...2,600,035
JBrowse link
G Amot angiomotin acts_upstream_of_or_within ISO (PMID:12676095) MGI PMID:12676095 NCBI chrNW_004624803:2,405,037...2,491,715
Ensembl chrNW_004624803:2,422,274...2,488,097
JBrowse link
G Chrd chordin acts_upstream_of_or_within ISO (PMID:12810603) MGI PMID:12810603 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Dact1 dishevelled binding antagonist of beta catenin 1 acts_upstream_of_or_within ISO (PMID:19701191) MGI PMID:19701191 NCBI chrNW_004624884:3,733,648...3,750,207
Ensembl chrNW_004624884:3,739,334...3,948,621
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624750:28,224,289...28,359,473 JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933) MGI PMID:9136933 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318
JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624831:1,573,058...1,584,861
Ensembl chrNW_004624831:1,571,942...1,584,775
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:15355796) MGI PMID:15355796 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033
JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15142971) MGI
UniProt
PMID:15142971 GO_REF:0000117 NCBI chrNW_004624767:18,438,165...18,551,362
Ensembl chrNW_004624767:18,438,274...18,551,338
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15142971) MGI
UniProt
PMID:15142971 GO_REF:0000117 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Nat8 N-acetyltransferase 8 (putative) involved_in ISO (PMID:11397015) UniProt PMID:11397015 NCBI chrNW_004624762:96,735...97,440 JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:14607953) MGI PMID:14607953 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Nsd1 nuclear receptor binding SET domain protein 1 acts_upstream_of_or_within ISO (PMID:12805229) MGI PMID:12805229 NCBI chrNW_004624733:12,781,693...12,929,861
Ensembl chrNW_004624733:12,786,347...12,927,980
JBrowse link
G Plpp3 phospholipid phosphatase 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624862:3,550,498...3,627,061
Ensembl chrNW_004624862:3,550,968...3,627,058
JBrowse link
G Rnf2 ring finger protein 2 acts_upstream_of_or_within ISO (PMID:12589020) MGI PMID:12589020 NCBI chrNW_004624814:8,470,818...8,516,252 JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325
JBrowse link
G Tenm4 teneurin transmembrane protein 4 acts_upstream_of_or_within ISO (PMID:15489520) MGI PMID:15489520 NCBI chrNW_004624863:1,643,173...2,374,330
Ensembl chrNW_004624863:1,643,076...2,149,630
JBrowse link
G Ugdh UDP-glucose 6-dehydrogenase involved_in
acts_upstream_of_or_within
ISO (PMID:14505572)
(PMID:15755804)
UniProt
MGI
PMID:14505572 PMID:15755804 NCBI chrNW_004624870:4,768,307...4,801,333
Ensembl chrNW_004624870:4,782,252...4,799,703
JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 acts_upstream_of_or_within ISO (PMID:14560010) MGI PMID:14560010 NCBI chrNW_004624764:2,144,555...2,174,177
Ensembl chrNW_004624764:2,144,878...2,174,545
JBrowse link
glycogen cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 acts_upstream_of_or_within ISO (PMID:12783884) MGI PMID:12783884 NCBI chrNW_004624734:507,880...525,295
Ensembl chrNW_004624734:509,368...525,295
JBrowse link
heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplnr apelin receptor involved_in ISO (PMID:23603510) BHF-UCL PMID:23603510 NCBI chrNW_004624864:3,308,548...3,311,431
Ensembl chrNW_004624864:3,308,794...3,309,939
JBrowse link
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:22554696) MGI PMID:22554696 NCBI chrNW_004624789:6,710,858...6,783,097
Ensembl chrNW_004624789:6,710,681...6,783,667
JBrowse link
G Asb2 ankyrin repeat and SOCS box containing 2 involved_in ISO (PMID:32179481) UniProt PMID:32179481 NCBI chrNW_004624734:10,317,932...10,352,300
Ensembl chrNW_004624734:10,316,299...10,352,515
JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004624817:2,880,775...3,060,399
Ensembl chrNW_004624817:2,880,976...3,042,004
JBrowse link
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:58,436,427...58,471,926
Ensembl chrNW_004624730:58,436,469...58,471,799
JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:9,160,852...9,217,033
Ensembl chrNW_004624801:9,160,805...9,217,756
JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:15750185) MGI PMID:15750185 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536
JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO (PMID:23742838) MGI PMID:23742838 NCBI chrNW_004624824:1,299,426...1,352,019
Ensembl chrNW_004624824:1,300,137...1,351,129
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404
JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944400), (PMID:19944405) BHF-UCL PMID:19944400 PMID:19944405 NCBI chrNW_004624746:3,412,888...3,441,710 JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in ISO (PMID:22581229) BHF-UCL PMID:22581229 NCBI chrNW_004624795:404,102...407,025
Ensembl chrNW_004624795:404,068...406,979
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO (PMID:22841628) BHF-UCL PMID:22841628 NCBI chrNW_004624818:8,267,111...8,283,755
Ensembl chrNW_004624818:8,267,128...8,278,725
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in ISO (PMID:22841628) BHF-UCL PMID:22841628 NCBI chrNW_004624786:9,843,580...9,851,538
Ensembl chrNW_004624786:9,844,157...9,851,301
JBrowse link
G Eng endoglin involved_in ISO (PMID:10348742), (PMID:19703439) BHF-UCL PMID:10348742 PMID:19703439 NCBI chrNW_004624760:7,703,979...7,735,636
Ensembl chrNW_004624760:7,703,820...7,734,457
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:10411502) MGI PMID:10411502 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741
JBrowse link
G Folr1 folate receptor alpha involved_in ISO (PMID:17286298) BHF-UCL PMID:17286298 NCBI chrNW_004624817:4,830,164...4,850,565
Ensembl chrNW_004624817:4,820,163...4,851,339
JBrowse link
G Foxh1 forkhead box H1 involved_in ISO (PMID:15363409) BHF-UCL PMID:15363409 NCBI chrNW_004624735:12,384,728...12,388,234
Ensembl chrNW_004624735:12,386,281...12,387,774
JBrowse link
G Gata4 GATA binding protein 4 involved_in ISO (PMID:15310850) BHF-UCL PMID:15310850 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318
JBrowse link
G Gja1 gap junction protein alpha 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624798:9,358,996...9,364,413
Ensembl chrNW_004624798:9,359,004...9,364,313
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:9500551) MGI PMID:9500551 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (PMID:9171826) MGI PMID:9171826 NCBI chrNW_004624769:5,035,669...5,038,333
Ensembl chrNW_004624769:5,033,932...5,038,343
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:14659802) MGI PMID:14659802 NCBI chrNW_004624734:39,414,458...39,471,705
Ensembl chrNW_004624734:39,411,824...39,471,705
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:18930042) MGI PMID:18930042 NCBI chrNW_004624738:9,510,452...9,546,985
Ensembl chrNW_004624738:9,510,512...9,545,933
JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (PMID:15930098) MGI PMID:15930098 NCBI chrNW_004624790:10,674,002...10,726,292
Ensembl chrNW_004624790:10,678,911...10,726,265
JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO (PMID:17027958) MGI PMID:17027958 NCBI chrNW_004624731:41,321,574...41,390,133
Ensembl chrNW_004624731:41,322,033...41,388,570
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769
JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) MGI PMID:25463925 NCBI chrNW_004624767:19,247,009...19,365,520
Ensembl chrNW_004624767:19,248,430...19,364,793
JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within ISO (PMID:10330409) MGI PMID:10330409 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121
JBrowse link
G Lbx1 ladybird homeobox 1 acts_upstream_of_or_within ISO (PMID:12522123) MGI PMID:12522123 NCBI chrNW_004624831:777,873...780,481
Ensembl chrNW_004624831:778,866...780,365
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (PMID:16680724) UniProt PMID:16680724 NCBI chrNW_004624743:8,072,871...8,235,174
Ensembl chrNW_004624743:8,072,673...8,235,252
JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:16000382) MGI PMID:16000382 NCBI chrNW_004624770:9,936,202...10,051,018
Ensembl chrNW_004624770:9,941,706...10,051,024
JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:16,881,189...16,884,245
Ensembl chrNW_004624733:16,881,191...16,884,210
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:16496285) MGI PMID:16496285 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Notch1 notch receptor 1 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531
JBrowse link
G Notch2 notch receptor 2 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chrNW_004624772:15,572,350...15,726,312
Ensembl chrNW_004624772:15,571,998...15,726,426
JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO (PMID:17884984) MGI PMID:17884984 NCBI chrNW_004624762:430,981...439,422 JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO (PMID:18371931), (PMID:20007846) BHF-UCL PMID:18371931 PMID:20007846 NCBI chrNW_004624730:8,824,370...8,874,614
Ensembl chrNW_004624730:8,816,643...8,874,649
JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (PMID:17573777) MGI PMID:17573777 NCBI chrNW_004624741:18,994,689...19,012,381
Ensembl chrNW_004624741:18,995,246...19,012,910
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) BHF-UCL PMID:21719175 NCBI chrNW_004624872:4,539,965...4,592,004
Ensembl chrNW_004624872:4,539,847...4,594,793
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO (PMID:10411502), (PMID:10500184)
(PMID:11517919)
MGI
BHF-UCL
PMID:10411502 PMID:10500184 PMID:11517919 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371
JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in
ISO (PMID:17610846)
(PMID:17610846), (PMID:17655922)
MGI
BHF-UCL
PMID:17610846 PMID:17655922 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:15929941) MGI PMID:15929941 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004624859:5,510,442...5,572,122
Ensembl chrNW_004624859:5,510,384...5,572,228
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:16155214) MGI PMID:16155214 NCBI chrNW_004624831:1,882,114...2,012,341
Ensembl chrNW_004624831:1,882,077...2,012,341
JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within
involved_in
ISO (PMID:15901664)
(PMID:15843409)
(PMID:15843407)
MGI
BHF-UCL
PMID:15843407 PMID:15843409 PMID:15901664 NCBI chrNW_004624740:25,645,526...25,698,235
Ensembl chrNW_004624740:25,645,895...25,697,132
JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:17460765)
(PMID:18723448)
MGI PMID:17460765 PMID:18723448 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in ISO (PMID:17050629) BHF-UCL PMID:17050629 NCBI chrNW_004624788:8,447,679...8,535,821
Ensembl chrNW_004624788:8,447,542...8,535,959
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624794:841,302...867,717
Ensembl chrNW_004624794:841,247...867,708
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:16291790) MGI PMID:16291790 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
G Zic3 Zic family member 3 involved_in
acts_upstream_of_or_within
ISO (PMID:9354794)
(PMID:16496285)
(PMID:15384171)
BHF-UCL
MGI
PMID:9354794 PMID:15384171 PMID:16496285 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093
JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO (PMID:15677567), (PMID:18550854)
(PMID:19182774)
MGI PMID:15677567 PMID:18550854 PMID:19182774 NCBI chrNW_004624859:5,586,489...5,601,225
Ensembl chrNW_004624859:5,586,977...5,601,460
JBrowse link
in utero embryonic development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:7,929,997...8,004,235
Ensembl chrNW_004624732:7,929,583...8,005,072
JBrowse link
G Acvr1b activin A receptor type 1B acts_upstream_of_or_within ISO (PMID:15485907), (PMID:16564040) MGI PMID:15485907 PMID:16564040 NCBI chrNW_004624816:331,695...374,187
Ensembl chrNW_004624816:331,695...374,193
JBrowse link
G Acvr1c activin A receptor type 1C NOT|acts_upstream_of_or_within ISO (PMID:15485907) MGI PMID:15485907 NCBI chrNW_004624732:8,130,970...8,247,528
Ensembl chrNW_004624732:8,130,962...8,247,289
JBrowse link
G Acvrl1 activin A receptor like type 1 acts_upstream_of_or_within ISO (PMID:17911384) MGI PMID:17911384 NCBI chrNW_004624816:402,412...426,217
Ensembl chrNW_004624816:404,358...426,217
JBrowse link
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:7731963), (PMID:9272950) MGI PMID:7731963 PMID:9272950 NCBI chrNW_004624790:9,809,550...9,829,199
Ensembl chrNW_004624790:9,809,492...9,829,883
JBrowse link
G Adam10 ADAM metallopeptidase domain 10 involved_in ISO (PMID:12354787) UniProt PMID:12354787 NCBI chrNW_004624781:13,195,390...13,321,823
Ensembl chrNW_004624781:13,195,755...13,321,823
JBrowse link
G Adamts3 ADAM metallopeptidase with thrombospondin type 1 motif 3 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624890:3,738,727...3,925,377
Ensembl chrNW_004624890:3,738,186...3,925,491
JBrowse link
G Adcy9 adenylate cyclase 9 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624824:1,777,141...1,902,324
Ensembl chrNW_004624824:1,777,141...1,939,071
JBrowse link
G Add1 adducin 1 acts_upstream_of_or_within ISO (PMID:18723693) MGI PMID:18723693 NCBI chrNW_004624755:24,854,742...24,927,912
Ensembl chrNW_004624755:24,854,742...24,928,006
JBrowse link
G Als2 alsin Rho guanine nucleotide exchange factor ALS2 ISO RGD PMID:16049005 RGD:1599081 NCBI chrNW_004624899:74,080...170,565 JBrowse link
G Amot angiomotin acts_upstream_of_or_within ISO (PMID:12676095) MGI PMID:12676095 NCBI chrNW_004624803:2,405,037...2,491,715
Ensembl chrNW_004624803:2,422,274...2,488,097
JBrowse link
G Angpt1 angiopoietin 1 acts_upstream_of_or_within ISO (PMID:11172728) MGI PMID:11172728 NCBI chrNW_004624763:22,645,807...22,818,592
Ensembl chrNW_004624763:22,646,231...22,718,294
JBrowse link
G Ankrd11 ankyrin repeat domain containing 11 acts_upstream_of_or_within ISO (PMID:17986521) MGI PMID:17986521 NCBI chrNW_004624746:378,123...576,809
Ensembl chrNW_004624746:461,933...577,050
JBrowse link
G Anks6 ankyrin repeat and sterile alpha motif domain containing 6 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624825:2,157,158...2,214,115
Ensembl chrNW_004624825:2,157,158...2,212,971
JBrowse link
G Apba1 amyloid beta precursor protein binding family A member 1 acts_upstream_of_or_within ISO (PMID:17167098) MGI PMID:17167098 NCBI chrNW_004624736:3,404,915...3,637,346
Ensembl chrNW_004624736:3,565,299...3,635,775
JBrowse link
G Apba2 amyloid beta precursor protein binding family A member 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624768:2,037,866...2,276,498
Ensembl chrNW_004624768:2,207,238...2,276,747
JBrowse link
G Apba3 amyloid beta precursor protein binding family A member 3 acts_upstream_of_or_within ISO (PMID:17167098) MGI PMID:17167098 NCBI chrNW_004624828:6,398,541...6,405,904
Ensembl chrNW_004624828:6,398,622...6,403,984
JBrowse link
G Apob apolipoprotein B acts_upstream_of_or_within ISO (PMID:7878058)
(PMID:9502790)
MGI PMID:7878058 PMID:9502790 NCBI chrNW_004624738:3,579,747...3,622,508
Ensembl chrNW_004624738:3,580,033...3,620,192
JBrowse link
G Ar androgen receptor acts_upstream_of_or_within ISO (PMID:10319319) MGI PMID:10319319 NCBI chrNW_004624891:3,135,824...3,330,487
Ensembl chrNW_004624891:3,138,848...3,329,459
JBrowse link
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within ISO (PMID:28169274) MGI PMID:28169274 NCBI chrNW_004624782:14,461,488...14,468,407
Ensembl chrNW_004624782:14,462,114...14,468,404
JBrowse link
G Arnt2 aryl hydrocarbon receptor nuclear translocator 2 involved_in ISO (PMID:12502753) UniProt PMID:12502753 NCBI chrNW_004624768:21,166,554...21,319,462
Ensembl chrNW_004624768:21,166,554...21,319,594
JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:15,107,157...15,111,696
Ensembl chrNW_004624767:15,107,159...15,109,191
JBrowse link
G Atf2 activating transcription factor 2 involved_in ISO (PMID:17699753) MGI PMID:17699753 NCBI chrNW_004624787:12,241,838...12,338,089 JBrowse link
G Atf7 activating transcription factor 7 involved_in ISO (PMID:17699753) MGI PMID:17699753 NCBI chrNW_004624904:1,604,083...1,705,739
Ensembl chrNW_004624904:1,613,487...1,706,549
JBrowse link
G Atp11a ATPase phospholipid transporting 11A acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624793:904,320...998,413
Ensembl chrNW_004624793:903,847...998,436
JBrowse link
G Atp7a ATPase copper transporting alpha ISO RGD PMID:10864443 RGD:1599395 NCBI chrNW_004624836:2,804,349...3,058,125
Ensembl chrNW_004624836:2,808,681...2,993,452
JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624913:1,139,165...1,195,477
Ensembl chrNW_004624913:1,139,165...1,195,230
JBrowse link
G B9d1 B9 domain containing 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624849:5,635,996...5,644,139
Ensembl chrNW_004624849:5,633,076...5,644,221
JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 involved_in ISO (PMID:22878500) MGI PMID:22878500 NCBI chrNW_004624822:4,809,489...4,818,514
Ensembl chrNW_004624822:4,809,405...4,818,515
JBrowse link
G Bcl2l1 BCL2 like 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624741:788,445...838,513
Ensembl chrNW_004624741:789,355...839,507
JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within ISO (PMID:16282979) MGI PMID:16282979 NCBI chrNW_004624749:1,033,824...1,130,099
Ensembl chrNW_004624749:1,091,096...1,125,341
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO (PMID:11290297) MGI PMID:11290297 NCBI chrNW_004624796:6,277,201...6,282,830
Ensembl chrNW_004624796:6,274,561...6,282,984
JBrowse link
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO (PMID:16314491) MGI PMID:16314491 NCBI chrNW_004624741:7,706,205...7,717,677
Ensembl chrNW_004624741:7,706,236...7,719,484
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:17359964) MGI PMID:17359964 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397
JBrowse link
G Brk1 BRICK1 subunit of SCAR/WAVE actin nucleating complex acts_upstream_of_or_within ISO (PMID:20861187) MGI PMID:20861187 NCBI chrNW_004624731:4,679,060...4,685,892
Ensembl chrNW_004624731:4,678,731...4,687,617
JBrowse link
G Btf3 basic transcription factor 3 acts_upstream_of_or_within ISO (PMID:7655515) MGI PMID:7655515 NCBI chrNW_004624924:1,525,888...1,532,085 JBrowse link
G Bysl bystin like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:17,195,248...17,204,827
Ensembl chrNW_004624754:17,195,251...17,205,198
JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004624817:2,880,775...3,060,399
Ensembl chrNW_004624817:2,880,976...3,042,004
JBrowse link
G C6 complement C6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:13,775,339...13,842,415
Ensembl chrNW_004624759:13,775,358...13,842,648
JBrowse link
G Camsap3 calmodulin regulated spectrin associated protein family member 3 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624828:689,010...703,496
Ensembl chrNW_004624828:688,564...704,174
JBrowse link
G Ccm2 CCM2 scaffold protein acts_upstream_of_or_within ISO (PMID:19151727) MGI PMID:19151727 NCBI chrNW_004624740:7,308,178...7,348,681
Ensembl chrNW_004624740:7,308,177...7,348,689
JBrowse link
G Ccnb2 cyclin B2 acts_upstream_of_or_within ISO (PMID:9539739) MGI PMID:9539739 NCBI chrNW_004624781:12,875,215...12,905,878
Ensembl chrNW_004624781:12,874,020...12,905,932
JBrowse link
G Ccnk cyclin K acts_upstream_of_or_within ISO (PMID:22012619) MGI PMID:22012619 NCBI chrNW_004624734:4,366,884...4,392,934
Ensembl chrNW_004624734:4,367,396...4,383,419
JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within ISO (PMID:15775979) MGI PMID:15775979 NCBI chrNW_004624746:17,480,472...17,557,722
Ensembl chrNW_004624746:17,483,469...17,557,581
JBrowse link
G Cdh11 cadherin 11 acts_upstream_of_or_within ISO (PMID:17143286) MGI PMID:17143286 NCBI chrNW_004624746:21,345,304...21,501,542
Ensembl chrNW_004624746:21,345,310...21,503,822
JBrowse link
G Cdk2ap1 cyclin dependent kinase 2 associated protein 1 acts_upstream_of_or_within ISO (PMID:19229340) MGI PMID:19229340 NCBI chrNW_004624747:23,195,459...23,205,612
Ensembl chrNW_004624747:23,195,459...23,205,387
JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A acts_upstream_of_or_within ISO (PMID:26334721) MGI PMID:26334721 NCBI chrNW_004624754:21,109,074...21,115,869
Ensembl chrNW_004624754:21,108,874...21,115,885
JBrowse link
G Celf4 CUGBP Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624779:11,443,993...11,731,208
Ensembl chrNW_004624779:11,452,545...11,731,251
JBrowse link
G Cert1 ceramide transporter 1 acts_upstream_of_or_within ISO (PMID:19139267)
(PMID:27996060)
MGI PMID:19139267 PMID:27996060 NCBI chrNW_004624951:718,380...828,220
Ensembl chrNW_004624951:721,411...828,150
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:16207732) MGI
UniProt
PMID:16207732 GO_REF:0000117 NCBI chrNW_004624744:31,103,053...31,302,314
Ensembl chrNW_004624744:31,103,059...31,235,623
JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624825:7,411,629...7,475,111
Ensembl chrNW_004624825:7,411,629...7,474,526
JBrowse link
G Chrd chordin involved_in ISO (PMID:12810603) MGI PMID:12810603 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624750:4,227,229...4,391,177
Ensembl chrNW_004624750:4,223,561...4,391,218
JBrowse link
G Chtop chromatin target of PRMT1 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624885:3,501,468...3,511,481
Ensembl chrNW_004624885:3,501,470...3,511,451
JBrowse link
G Cir1 corepressor interacting with RBPJ, CIR1 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624787:11,589,199...11,624,862
Ensembl chrNW_004624787:11,589,396...11,624,745
JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:16579983) MGI PMID:16579983 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536
JBrowse link
G Cmip c-Maf inducing protein acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624746:5,866,261...6,049,217
Ensembl chrNW_004624746:5,865,883...6,049,567
JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:32879327) MGI PMID:32879327 NCBI chrNW_004624800:7,182,588...9,280,407
Ensembl chrNW_004624800:7,181,020...9,279,678
JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO (PMID:25330296) MGI PMID:25330296 NCBI chrNW_004624899:1,192,078...1,230,528
Ensembl chrNW_004624899:1,192,360...1,230,404
JBrowse link
G Cops3 COP9 signalosome subunit 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624849:4,125,188...4,150,933
Ensembl chrNW_004624849:4,124,586...4,150,933
JBrowse link
G Coq7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO (PMID:11716496)
(PMID:11585841)
MGI PMID:11585841 PMID:11716496 NCBI chrNW_004624782:2,682,489...2,689,662
Ensembl chrNW_004624782:2,682,486...2,689,661
JBrowse link
G Cpt2 carnitine palmitoyltransferase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624934:1,239,849...1,271,993
Ensembl chrNW_004624934:1,250,956...1,271,983
JBrowse link
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO (PMID:9876177) MGI PMID:9876177 NCBI chrNW_004624730:74,547,226...74,550,526 JBrowse link
G Ctcf CCCTC-binding factor acts_upstream_of_or_within ISO (PMID:28846746) MGI PMID:28846746 NCBI chrNW_004624746:18,705,017...18,760,345
Ensembl chrNW_004624746:18,706,663...18,760,203
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Cubn cubilin ISO RGD PMID:15616221 RGD:1599657 NCBI chrNW_004624796:10,728,853...10,987,292
Ensembl chrNW_004624796:10,728,983...10,988,361
JBrowse link
G Cul3 cullin 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727
JBrowse link
G Cul4a cullin 4A involved_in ISO (PMID:12077329) CACAO PMID:12077329 NCBI chrNW_004624793:686,720...722,516
Ensembl chrNW_004624793:688,135...722,490
JBrowse link
G CUNH19orf67 chromosome unknown C19orf67 homolog acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624901:1,310,671...1,314,361
Ensembl chrNW_004624901:1,310,605...1,314,415
JBrowse link
G Dab2 DAB adaptor protein 2 acts_upstream_of_or_within ISO (PMID:12413896) MGI PMID:12413896 NCBI chrNW_004624759:15,459,436...15,520,225
Ensembl chrNW_004624759:15,459,288...15,520,924
JBrowse link
G Dbn1 drebrin 1 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624733:12,616,537...12,631,967
Ensembl chrNW_004624733:12,616,423...12,632,133
JBrowse link
G Dhx35 DEAH-box helicase 35 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624842:662,875...734,201
Ensembl chrNW_004624842:664,031...748,166
JBrowse link
G Diaph3 diaphanous related formin 3 acts_upstream_of_or_within ISO (PMID:24239357) MGI PMID:24239357 NCBI chrNW_004624748:20,937,242...21,439,554
Ensembl chrNW_004624748:21,045,085...21,383,605
JBrowse link
G Dnaaf2 dynein axonemal assembly factor 2 acts_upstream_of_or_within ISO (PMID:31107948) MGI PMID:31107948 NCBI chrNW_004624731:19,069,162...19,077,501
Ensembl chrNW_004624731:19,069,203...19,077,505
JBrowse link
G Dsc3 desmocollin 3 acts_upstream_of_or_within ISO (PMID:16418220) MGI PMID:16418220 NCBI chrNW_004624770:1,799,731...1,846,379
Ensembl chrNW_004624770:1,803,296...1,843,687
JBrowse link
G Dusp3 dual specificity phosphatase 3 ISO RGD PMID:18035061 RGD:2317890 NCBI chrNW_004624795:994,103...1,001,697 JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO (PMID:15327783) MGI PMID:15327783 NCBI chrNW_004624756:13,842,482...13,849,003
Ensembl chrNW_004624756:13,842,164...13,849,029
JBrowse link
G Ednra endothelin receptor type A acts_upstream_of_or_within ISO (PMID:15327783) MGI PMID:15327783 NCBI chrNW_004624853:6,298,406...6,362,353
Ensembl chrNW_004624853:6,302,751...6,360,089
JBrowse link
G Egfl8 EGF like domain multiple 8 NOT|involved_in ISO (PMID:15162510) UniProt PMID:15162510 NCBI chrNW_004624754:24,152,544...24,155,271
Ensembl chrNW_004624754:24,152,811...24,155,240
JBrowse link
G Eif2s2 eukaryotic translation initiation factor 2 subunit beta acts_upstream_of_or_within ISO (PMID:19168544) MGI PMID:19168544 NCBI chrNW_004624842:5,212,720...5,231,280
Ensembl chrNW_004624842:5,212,743...5,231,280
JBrowse link
G Eif4e2 eukaryotic translation initiation factor 4E family member 2 acts_upstream_of_or_within ISO (PMID:22751931) MGI PMID:22751931 NCBI chrNW_004624843:5,303,157...5,332,228
Ensembl chrNW_004624843:5,303,172...5,332,228
JBrowse link
G Ell elongation factor for RNA polymerase II acts_upstream_of_or_within ISO (PMID:11118326) MGI PMID:11118326 NCBI chrNW_004624908:1,665,407...1,709,509
Ensembl chrNW_004624908:1,666,647...1,709,425
JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO (PMID:23861879) MGI PMID:23861879 NCBI chrNW_004624762:685,331...702,040
Ensembl chrNW_004624762:681,308...701,998
JBrowse link
G Endog endonuclease G acts_upstream_of_or_within ISO (PMID:14663139) MGI PMID:14663139 NCBI chrNW_004624760:6,193,168...6,196,209
Ensembl chrNW_004624760:6,193,173...6,196,374
JBrowse link
G Eno1 enolase 1 acts_upstream_of_or_within ISO (PMID:9626503) MGI PMID:9626503 NCBI chrNW_004624818:3,223,384...3,235,128
Ensembl chrNW_004624818:3,223,308...3,238,419
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244
JBrowse link
G Epn1 epsin 1 acts_upstream_of_or_within ISO (PMID:19666558) MGI PMID:19666558 NCBI chrNW_004624832:1,732,895...1,746,963
Ensembl chrNW_004624832:1,732,571...1,746,888
JBrowse link
G Epn2 epsin 2 acts_upstream_of_or_within ISO (PMID:19666558) MGI PMID:19666558 NCBI chrNW_004624849:5,520,279...5,632,152
Ensembl chrNW_004624849:5,577,679...5,633,008
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:17020410) MGI PMID:17020410 NCBI chrNW_004624907:2,249,323...2,263,999
Ensembl chrNW_004624907:2,250,133...2,263,947
JBrowse link
G Erf ETS2 repressor factor acts_upstream_of_or_within ISO (PMID:17502352) MGI PMID:17502352 NCBI chrNW_004624907:499,913...506,719
Ensembl chrNW_004624907:499,883...507,629
JBrowse link
G Esrrb estrogen related receptor beta acts_upstream_of_or_within ISO (PMID:9285590) MGI PMID:9285590 NCBI chrNW_004624734:25,261,493...25,369,092
Ensembl chrNW_004624734:25,261,493...25,430,045
JBrowse link
G Etnk2 ethanolamine kinase 2 acts_upstream_of_or_within ISO (PMID:16861741) MGI PMID:16861741 NCBI chrNW_004624807:6,829,789...6,848,295
Ensembl chrNW_004624807:6,829,827...6,845,850
JBrowse link
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (PMID:18462699) MGI PMID:18462699 NCBI chrNW_004624794:7,985,662...7,989,063
Ensembl chrNW_004624794:7,984,884...7,988,296
JBrowse link
G Exoc3l2 exocyst complex component 3 like 2 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624907:2,158,565...2,172,103
Ensembl chrNW_004624907:2,159,935...2,179,736
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (PMID:17687036) MGI PMID:17687036 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:9435295)
(PMID:17687036)
MGI PMID:9435295 PMID:17687036 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 acts_upstream_of_or_within ISO (PMID:24777781) MGI PMID:24777781 NCBI chrNW_004624795:1,936,714...1,942,667
Ensembl chrNW_004624795:1,937,173...1,942,483
JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO (PMID:28039900)
(PMID:23591631)
MGI PMID:23591631 PMID:28039900 NCBI chrNW_004624832:6,849,001...6,858,931
Ensembl chrNW_004624832:6,849,005...6,857,898
JBrowse link
G Flcn folliculin acts_upstream_of_or_within
involved_in
ISO
ISS
(PMID:21258407) MGI
UniProt
PMID:21258407 GO_REF:0000024 NCBI chrNW_004624849:4,157,683...4,179,724 JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO (PMID:18258918) MGI PMID:18258918 NCBI chrNW_004624771:18,239,437...18,270,408 JBrowse link
G Flvcr2 FLVCR choline and putative heme transporter 2 acts_upstream_of_or_within ISO (PMID:32369453) MGI PMID:32369453 NCBI chrNW_004624734:26,033,790...26,085,027
Ensembl chrNW_004624734:26,033,790...26,085,014
JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:20,519,054...20,525,311
Ensembl chrNW_004624767:20,519,313...20,524,554
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:9152011) MGI PMID:9152011 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO (PMID:4819561) MGI PMID:4819561 NCBI chrNW_004624756:23,060,065...23,062,407
Ensembl chrNW_004624756:23,060,751...23,062,343
JBrowse link
G Foxf1 forkhead box F1 involved_in
acts_upstream_of_or_within
ISO (PMID:19500772)
(PMID:11124112), (PMID:11493558)
DFLAT
MGI
PMID:11124112 PMID:11493558 PMID:19500772 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
G Gabpa GA binding protein transcription factor subunit alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624745:13,787,352...13,820,781
Ensembl chrNW_004624745:13,788,288...13,821,599
JBrowse link
G Gata1 GATA binding protein 1 acts_upstream_of_or_within ISO (PMID:9576834) MGI PMID:9576834 NCBI chrNW_004624893:595,948...602,980
Ensembl chrNW_004624893:595,967...602,979
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624775:2,985,077...3,014,567
Ensembl chrNW_004624775:2,994,164...3,015,392
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933)
(PMID:20123909)
(PMID:9136932)
(PMID:15310850)
MGI PMID:9136932 PMID:9136933 PMID:15310850 PMID:20123909 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318
JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO (PMID:20123909)
(PMID:9832509)
MGI PMID:9832509 PMID:20123909 NCBI chrNW_004624770:9,772,818...9,799,837
Ensembl chrNW_004624770:9,772,818...9,798,259
JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chrNW_004624908:2,213,661...2,305,877
Ensembl chrNW_004624908:2,230,581...2,308,579
JBrowse link
G Gdf1 growth differentiation factor 1 acts_upstream_of_or_within ISO (PMID:17936261) MGI PMID:17936261 NCBI chrNW_004624908:1,935,525...1,937,012
Ensembl chrNW_004624908:1,935,539...1,936,953
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (PMID:17936261)
(PMID:16368929)
MGI PMID:16368929 PMID:17936261 NCBI chrNW_004624860:4,968,624...4,970,362 JBrowse link
G Gja1 gap junction protein alpha 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624798:9,358,996...9,364,413
Ensembl chrNW_004624798:9,359,004...9,364,313
JBrowse link
G Gjb3 gap junction protein beta 3 ISO RGD PMID:9291584 RGD:1599752 NCBI chrNW_004624764:17,829,214...17,833,509
Ensembl chrNW_004624764:17,829,467...17,833,465
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:19056373) MGI PMID:19056373 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16254602) MGI PMID:16254602 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Gna12 G protein subunit alpha 12 acts_upstream_of_or_within ISO (PMID:12077299) MGI PMID:12077299 NCBI chrNW_004624740:30,134,262...30,245,079
Ensembl chrNW_004624740:30,133,435...30,245,079
JBrowse link
G Gna13 G protein subunit alpha 13 acts_upstream_of_or_within ISO (PMID:12077299) MGI PMID:12077299 NCBI chrNW_004624870:3,278,870...3,323,015
Ensembl chrNW_004624870:3,278,898...3,323,153
JBrowse link
G Gpi glucose-6-phosphate isomerase acts_upstream_of_or_within ISO (PMID:1582174) MGI PMID:1582174 NCBI chrNW_004624794:8,826,281...8,851,614
Ensembl chrNW_004624794:8,823,449...8,851,625
JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21262862) MGI PMID:21262862 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358
JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B acts_upstream_of_or_within ISO (PMID:9147327) MGI PMID:9147327 NCBI chrNW_004624752:24,008,520...24,480,834
Ensembl chrNW_004624752:24,135,487...24,459,288
JBrowse link
G Gse1 Gse1 coiled-coil protein acts_upstream_of_or_within ISO (PMID:37019373) MGI PMID:37019373 NCBI chrNW_004624746:1,842,635...2,106,466
Ensembl chrNW_004624746:2,027,893...2,108,734
JBrowse link
G Gusb glucuronidase beta acts_upstream_of_or_within ISO (PMID:32102934) MGI PMID:32102934 NCBI chrNW_004624740:8,390,096...8,401,063
Ensembl chrNW_004624740:8,390,197...8,401,387
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:9500551) MGI PMID:9500551 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (PMID:9171826) MGI PMID:9171826 NCBI chrNW_004624769:5,035,669...5,038,333
Ensembl chrNW_004624769:5,033,932...5,038,343
JBrowse link
G Hcn4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 acts_upstream_of_or_within ISO (PMID:14657344) MGI PMID:14657344 NCBI chrNW_004624781:968,608...1,007,969
Ensembl chrNW_004624781:968,748...1,008,200
JBrowse link
G Hdac3 histone deacetylase 3 involved_in ISO (PMID:32467224) MGI PMID:32467224 NCBI chrNW_004624774:845,970...864,080
Ensembl chrNW_004624774:845,358...863,809
JBrowse link
G Heg1 heart development protein with EGF like domains 1 acts_upstream_of_or_within ISO (PMID:19151727) MGI PMID:19151727 NCBI chrNW_004624731:1,015,889...1,092,875
Ensembl chrNW_004624731:1,020,805...1,092,995
JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:11500373) MGI PMID:11500373 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781
JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (PMID:11500373) MGI PMID:11500373 NCBI chrNW_004624818:5,156,428...5,160,858
Ensembl chrNW_004624818:5,153,717...5,161,026
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:21445260) MGI PMID:21445260 NCBI chrNW_004624737:3,897,907...3,903,828
Ensembl chrNW_004624737:3,897,871...3,904,083
JBrowse link
G Hinfp histone H4 transcription factor involved_in ISO (PMID:19590016) UniProt PMID:19590016 NCBI chrNW_004624784:14,502,600...14,514,012
Ensembl chrNW_004624784:14,502,554...14,513,567
JBrowse link
G Hm13 histocompatibility minor 13 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624741:924,040...977,646
Ensembl chrNW_004624741:921,023...977,703
JBrowse link
G Hsd17b2 hydroxysteroid 17-beta dehydrogenase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:5,372,176...5,445,726
Ensembl chrNW_004624746:5,368,142...5,446,429
JBrowse link
G Hsf1 heat shock transcription factor 1 acts_upstream_of_or_within ISO (PMID:10545106) MGI PMID:10545106 NCBI chrNW_004624735:12,536,818...12,562,643
Ensembl chrNW_004624735:12,537,128...12,562,644
JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase acts_upstream_of_or_within ISO (PMID:12105862)
(PMID:11121396)
MGI PMID:11121396 PMID:12105862 NCBI chrNW_004624818:5,165,923...5,174,761
Ensembl chrNW_004624818:5,165,876...5,174,828
JBrowse link
G Ifitm5 interferon induced transmembrane protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:22,122,739...22,134,231
Ensembl chrNW_004624766:22,132,437...22,134,684
JBrowse link
G Igf2 insulin like growth factor 2 involved_in ISO (PMID:28522536) UniProt PMID:28522536 NCBI chrNW_004624767:14,969,977...14,997,577
Ensembl chrNW_004624767:14,969,866...14,979,026
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769
JBrowse link
G Inpp5b inositol polyphosphate-5-phosphatase B acts_upstream_of_or_within ISO (PMID:20195868) MGI PMID:20195868 NCBI chrNW_004624764:20,558,145...20,610,126
Ensembl chrNW_004624764:20,559,009...20,609,341
JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K acts_upstream_of_or_within ISO (PMID:18573875) MGI PMID:18573875 NCBI chrNW_004624786:4,213,430...4,236,930
Ensembl chrNW_004624786:4,214,916...4,236,563
JBrowse link
G Insl3 insulin like 3 acts_upstream_of_or_within ISO (PMID:10319319) MGI PMID:10319319 NCBI chrNW_004624908:1,368,660...1,369,740 JBrowse link
G Itgb1 integrin subunit beta 1 acts_upstream_of_or_within ISO (PMID:7544313) MGI PMID:7544313 NCBI chrNW_004624805:8,748,848...8,800,259
Ensembl chrNW_004624805:8,765,949...8,802,149
JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 acts_upstream_of_or_within ISO (PMID:30208029) MGI PMID:30208029 NCBI chrNW_004624732:13,961,929...14,002,003
Ensembl chrNW_004624732:13,966,393...14,001,713
JBrowse link
G Jag2 jagged canonical Notch ligand 2 acts_upstream_of_or_within ISO (PMID:9531541) MGI PMID:9531541 NCBI chrNW_004624734:308,371...327,496
Ensembl chrNW_004624734:308,375...327,604
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO (PMID:10022836) MGI PMID:10022836 NCBI chrNW_004624901:402,969...404,741
Ensembl chrNW_004624901:403,235...404,269
JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO (PMID:17325035) MGI PMID:17325035 NCBI chrNW_004624795:1,782,367...1,787,408
Ensembl chrNW_004624795:1,782,366...1,788,951
JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) MGI PMID:25463925 NCBI chrNW_004624767:19,247,009...19,365,520
Ensembl chrNW_004624767:19,248,430...19,364,793
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (PMID:23028370)
(PMID:22949634)
MGI PMID:22949634 PMID:23028370 NCBI chrNW_004624887:1,065,173...1,279,660
Ensembl chrNW_004624887:1,065,883...1,279,186
JBrowse link
G Kdm8 lysine demethylase 8 acts_upstream_of_or_within ISO (PMID:26334721) MGI PMID:26334721 NCBI chrNW_004624782:11,884,847...11,903,944
Ensembl chrNW_004624782:11,884,631...11,903,947
JBrowse link
G Keap1 kelch like ECH associated protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:2,580,812...2,595,023
Ensembl chrNW_004624828:2,580,861...2,595,275
JBrowse link
G Kidins220 kinase D interacting substrate 220 acts_upstream_of_or_within ISO (PMID:19449316) MGI PMID:19449316 NCBI chrNW_004624846:2,184,306...2,267,021
Ensembl chrNW_004624846:2,190,468...2,265,068
JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121
JBrowse link
G Kifbp kinesin family binding protein acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624754:3,209,838...3,234,561
Ensembl chrNW_004624754:3,209,667...3,234,561
JBrowse link
G Klf1 KLF transcription factor 1 acts_upstream_of_or_within ISO (PMID:7753194) MGI PMID:7753194 NCBI chrNW_004624901:467,937...471,917
Ensembl chrNW_004624901:468,662...471,500
JBrowse link
G Klf2 KLF transcription factor 2 acts_upstream_of_or_within ISO (PMID:15947087), (PMID:9859212) MGI PMID:9859212 PMID:15947087 NCBI chrNW_004624908:1,021,865...1,023,279 JBrowse link
G Kmt2d lysine methyltransferase 2D acts_upstream_of_or_within ISO (PMID:16540515) MGI PMID:16540515 NCBI chrNW_004624816:3,129,127...3,169,143
Ensembl chrNW_004624816:3,133,659...3,166,346
JBrowse link
G Lig4 DNA ligase 4 acts_upstream_of_or_within ISO (PMID:16777961)
(PMID:10911993), (PMID:9823897)
MGI PMID:9823897 PMID:10911993 PMID:16777961 NCBI chrNW_004624793:3,699,394...3,706,591
Ensembl chrNW_004624793:3,699,506...3,706,073
JBrowse link
G Lman1 lectin, mannose binding 1 acts_upstream_of_or_within ISO (PMID:29735583) MGI PMID:29735583 NCBI chrNW_004624792:4,732,476...4,775,946
Ensembl chrNW_004624792:4,732,446...4,776,041
JBrowse link
G LOC101697925 zinc finger protein 30 homolog involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624794:11,208,164...11,252,549 JBrowse link
G LOC101710001 protein NPAT acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624784:2,888,075...2,932,999
Ensembl chrNW_004624784:2,888,718...2,932,855
JBrowse link
G LOC101725852 zinc finger protein 850 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624794:11,338,990...11,416,103 JBrowse link
G LOC106007592 protein SCO2 homolog, mitochondrial acts_upstream_of_or_within ISO (PMID:19837698) MGI PMID:19837698 NCBI chrNW_004624752:256,243...257,829
Ensembl chrNW_004624752:256,376...257,825
JBrowse link
G Lrp1b LDL receptor related protein 1B acts_upstream_of_or_within ISO (PMID:20383322) MGI PMID:20383322 NCBI chrNW_004624732:39,993,972...41,903,552
Ensembl chrNW_004624732:39,993,907...41,902,824
JBrowse link
G Ly6e lymphocyte antigen 6 family member E acts_upstream_of_or_within ISO (PMID:11784869) MGI PMID:11784869 NCBI chrNW_004624735:13,616,129...13,619,538 JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within ISO (PMID:36504079) MGI PMID:36504079 NCBI chrNW_004624746:7,653,690...7,672,404 JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO (PMID:36504079) MGI PMID:36504079 NCBI chrNW_004624919:1,337,269...1,340,607
Ensembl chrNW_004624919:1,339,228...1,340,208
JBrowse link
G Maff MAF bZIP transcription factor F acts_upstream_of_or_within ISO (PMID:15087497) MGI PMID:15087497 NCBI chrNW_004624752:9,771,303...9,781,608 JBrowse link
G Mafg MAF bZIP transcription factor G acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:10,760,599...10,769,578
Ensembl chrNW_004624801:10,764,186...10,769,454
JBrowse link
G Man2a1 mannosidase alpha class 2A member 1 acts_upstream_of_or_within ISO (PMID:16754854) MGI PMID:16754854 NCBI chrNW_004624743:27,607,094...27,791,612 JBrowse link
G Mapk8ip3 mitogen-activated protein kinase 8 interacting protein 3 acts_upstream_of_or_within ISO (PMID:18324732) MGI PMID:18324732 NCBI chrNW_004624913:481,236...529,083
Ensembl chrNW_004624913:481,207...529,070
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:7,132,228...7,144,599
Ensembl chrNW_004624828:7,132,274...7,144,964
JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 involved_in ISO (PMID:12915312) UniProt PMID:12915312 NCBI chrNW_004624730:29,930,292...30,112,145
Ensembl chrNW_004624730:29,959,580...30,113,245
JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chrNW_004624730:47,104,929...47,693,885
Ensembl chrNW_004624730:47,104,319...47,284,839
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:14500757) MGI PMID:14500757 NCBI chrNW_004624795:3,572,025...3,605,675
Ensembl chrNW_004624795:3,572,266...3,607,126
JBrowse link
G Mgat1 alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:8290590) MGI PMID:8290590 NCBI chrNW_004624811:11,050,378...11,069,734
Ensembl chrNW_004624811:11,050,385...11,069,431
JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:16000382) MGI PMID:16000382 NCBI chrNW_004624770:9,936,202...10,051,018
Ensembl chrNW_004624770:9,941,706...10,051,024
JBrowse link
G Mosmo modulator of smoothened acts_upstream_of_or_within ISO (PMID:34486668) MGI PMID:34486668 NCBI chrNW_004624782:7,455,770...7,513,931 JBrowse link
G Mrtfb myocardin related transcription factor B acts_upstream_of_or_within ISO (PMID:17183527) MGI PMID:17183527 NCBI chrNW_004624782:4,217,620...4,416,161
Ensembl chrNW_004624782:4,217,522...4,408,175
JBrowse link
G Msh2 mutS homolog 2 acts_upstream_of_or_within
NOT|acts_upstream_of_or_within
IEA
ISO
(PMID:9425892) Ensembl
MGI
PMID:9425892 GO_REF:0000107 NCBI chrNW_004624738:28,780,596...28,861,523
Ensembl chrNW_004624738:28,780,614...28,861,704
JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:17601530) MGI PMID:17601530 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337
JBrowse link
G Mtss1 MTSS I-BAR domain containing 1 acts_upstream_of_or_within ISO (PMID:21406566) MGI PMID:21406566 NCBI chrNW_004624735:30,512,474...30,659,727
Ensembl chrNW_004624735:30,512,464...30,659,718
JBrowse link
G Muc1 mucin 1, cell surface associated ISO RGD PMID:21263748 RGD:7349384 NCBI chrNW_004624885:2,339,281...2,343,351 JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (PMID:10523863)
(PMID:17927961)
MGI PMID:10523863 PMID:17927961 NCBI chrNW_004624886:2,455,704...2,489,593 JBrowse link
G Mybphl myosin binding protein H like acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624772:5,022,255...5,042,891
Ensembl chrNW_004624772:5,024,338...5,042,234
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:23077551 RGD:7207883 NCBI chrNW_004624735:27,780,338...27,784,714
Ensembl chrNW_004624735:27,780,037...27,784,806
JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO (PMID:12893741)
(PMID:11283949), (PMID:9356462)
MGI PMID:9356462 PMID:11283949 PMID:12893741 NCBI chrNW_004624786:11,039,436...11,190,935
Ensembl chrNW_004624786:11,040,951...11,185,627
JBrowse link
G Myh9 myosin heavy chain 9 acts_upstream_of_or_within ISO (PMID:16630581)
(PMID:15555549)
MGI PMID:15555549 PMID:16630581 NCBI chrNW_004624752:11,327,881...11,414,037
Ensembl chrNW_004624752:11,327,877...11,413,669
JBrowse link
G Myo18b myosin XVIIIB acts_upstream_of_or_within ISO (PMID:18761673) MGI PMID:18761673 NCBI chrNW_004624747:2,337,892...2,630,397
Ensembl chrNW_004624747:2,338,528...2,578,637
JBrowse link
G Myo1e myosin IE acts_upstream_of_or_within ISO (PMID:17143286) MGI PMID:17143286 NCBI chrNW_004624781:12,682,614...12,866,990
Ensembl chrNW_004624781:12,682,514...12,871,099
JBrowse link
G N4bp2l2 NEDD4 binding protein 2 like 2 acts_upstream_of_or_within ISO (PMID:18360097) MGI PMID:18360097 NCBI chrNW_004624776:5,295,054...5,467,454 JBrowse link
G Nbn nibrin involved_in ISO (PMID:14612522) UniProt PMID:14612522 NCBI chrNW_004624744:2,013,936...2,061,726
Ensembl chrNW_004624744:2,013,922...2,061,708
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538
JBrowse link
G Ncor1 nuclear receptor corepressor 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624877:4,203,125...4,379,891
Ensembl chrNW_004624877:4,233,282...4,377,211
JBrowse link
G Ncor2 nuclear receptor corepressor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17928865) UniProt
MGI
PMID:17928865 GO_REF:0000117 NCBI chrNW_004624747:23,777,645...23,887,804
Ensembl chrNW_004624747:23,777,325...23,865,804
JBrowse link
G Nmt1 N-myristoyltransferase 1 acts_upstream_of_or_within ISO (PMID:15753093) MGI PMID:15753093 NCBI chrNW_004624795:283,819...311,577
Ensembl chrNW_004624795:283,819...311,587
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:15485907)
(PMID:11311163)
MGI PMID:11311163 PMID:15485907 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:17359964) MGI PMID:17359964 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Nos3 nitric oxide synthase 3 acts_upstream_of_or_within ISO (PMID:11732991) MGI PMID:11732991 NCBI chrNW_004624800:5,600,215...5,619,020
Ensembl chrNW_004624800:5,600,212...5,619,004
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:7789282) MGI PMID:7789282 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531
JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO (PMID:17359302) MGI PMID:17359302 NCBI chrNW_004624772:15,572,350...15,726,312
Ensembl chrNW_004624772:15,571,998...15,726,426
JBrowse link
G Nr2f2 nuclear receptor subfamily 2 group F member 2 acts_upstream_of_or_within ISO (PMID:17404209) MGI PMID:17404209 NCBI chrNW_004624768:7,713,771...7,728,102
Ensembl chrNW_004624768:7,701,674...7,728,408
JBrowse link
G Nrbp1 nuclear receptor binding protein 1 involved_in ISO (PMID:22510880) UniProt PMID:22510880 NCBI chrNW_004624738:9,497,917...9,508,452 JBrowse link
G Nsrp1 nuclear speckle splicing regulatory protein 1 acts_upstream_of_or_within ISO (PMID:21296756) MGI PMID:21296756 NCBI chrNW_004624786:2,606,262...2,663,833 JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624751:4,288,436...4,309,172
Ensembl chrNW_004624751:4,287,249...4,309,438
JBrowse link
G Nxn nucleoredoxin acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624786:3,373,533...3,516,592
Ensembl chrNW_004624786:3,372,796...3,515,142
JBrowse link
G Ocrl OCRL inositol polyphosphate-5-phosphatase acts_upstream_of_or_within ISO (PMID:20195868) MGI PMID:20195868 NCBI chrNW_004624797:8,731,130...8,792,300
Ensembl chrNW_004624797:8,730,713...8,792,727
JBrowse link
G Otud7b OTU deubiquitinase 7B acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624772:17,717,178...17,776,940
Ensembl chrNW_004624772:17,721,218...17,787,299
JBrowse link
G P2ry2 purinergic receptor P2Y2 ISO RGD PMID:14517997 RGD:2316694 NCBI chrNW_004624817:3,706,017...3,721,045
Ensembl chrNW_004624817:3,706,017...3,719,649
JBrowse link
G Padi6 peptidyl arginine deiminase 6 acts_upstream_of_or_within ISO (PMID:17587491) MGI PMID:17587491 NCBI chrNW_004624764:2,904,874...2,921,186
Ensembl chrNW_004624764:2,904,384...2,921,523
JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO (PMID:23657012) MGI PMID:23657012 NCBI chrNW_004624782:8,752,510...8,780,972
Ensembl chrNW_004624782:8,751,866...8,780,884
JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within ISO (PMID:11290297) MGI PMID:11290297 NCBI chrNW_004624795:3,942,868...3,952,325
Ensembl chrNW_004624795:3,947,885...3,951,122
JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (PMID:20096683) MGI PMID:20096683 NCBI chrNW_004624745:31,402,791...31,516,522
Ensembl chrNW_004624745:31,403,014...31,515,751
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha acts_upstream_of_or_within ISO (PMID:10331973), (PMID:17143286) MGI PMID:10331973 PMID:17143286 NCBI chrNW_004624761:15,223,789...15,269,685
Ensembl chrNW_004624761:15,225,356...15,269,810
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta acts_upstream_of_or_within ISO (PMID:17143286) MGI PMID:17143286 NCBI chrNW_004624774:9,432,765...9,469,690
Ensembl chrNW_004624774:9,432,541...9,469,881
JBrowse link
G Pdzk1 PDZ domain containing 1 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624772:17,023,837...17,057,160
Ensembl chrNW_004624772:17,022,967...17,057,447
JBrowse link
G Pitpnb phosphatidylinositol transfer protein beta acts_upstream_of_or_within ISO (PMID:11907258) MGI PMID:11907258 NCBI chrNW_004624747:4,172,948...4,235,501 JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:11493526) MGI PMID:11493526 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:16282979) MGI PMID:16282979 NCBI chrNW_004624913:118,520...166,939
Ensembl chrNW_004624913:118,733...165,859
JBrowse link
G Plcg1 phospholipase C gamma 1 acts_upstream_of_or_within ISO (PMID:11744703) MGI PMID:11744703 NCBI chrNW_004624919:1,766,533...1,800,130
Ensembl chrNW_004624919:1,766,149...1,803,097
JBrowse link
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO (PMID:16467571) MGI PMID:16467571 NCBI chrNW_004624740:16,074,027...16,082,139
Ensembl chrNW_004624740:16,074,141...16,082,223
JBrowse link
G Polb DNA polymerase beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:884,896...941,587 JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit acts_upstream_of_or_within ISO (PMID:23197651) MGI PMID:23197651 NCBI chrNW_004624870:136,060...204,486
Ensembl chrNW_004624870:177,239...204,552
JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:16,205,056...16,227,382
Ensembl chrNW_004624780:16,204,838...16,227,390
JBrowse link
G Prkcsh PRKCSH beta subunit of glucosidase II acts_upstream_of_or_within ISO (PMID:21685914) MGI PMID:21685914 NCBI chrNW_004624828:3,219,105...3,227,369
Ensembl chrNW_004624828:3,219,216...3,227,369
JBrowse link
G Prmt1 protein arginine methyltransferase 1 acts_upstream_of_or_within ISO (PMID:10848611) MGI PMID:10848611 NCBI chrNW_004624832:4,593,594...4,602,514
Ensembl chrNW_004624832:4,589,743...4,602,402
JBrowse link
G Prrc2b proline rich coiled-coil 2B acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624760:4,512,387...4,579,759
Ensembl chrNW_004624760:4,514,584...4,579,768
JBrowse link
G Psph phosphoserine phosphatase acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624740:8,212,051...8,233,358
Ensembl chrNW_004624740:8,213,574...8,226,224
JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:21406566) MGI PMID:21406566 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389
JBrowse link
G Pth1r parathyroid hormone 1 receptor acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624730:74,371,614...74,392,344
Ensembl chrNW_004624730:74,371,294...74,390,262
JBrowse link
G Ptprr protein tyrosine phosphatase receptor type R involved_in ISO (PMID:10601328) UniProt PMID:10601328 NCBI chrNW_004624750:26,907,292...27,188,129
Ensembl chrNW_004624750:26,906,871...27,188,249
JBrowse link
G Rad51b RAD51 paralog B acts_upstream_of_or_within ISO (PMID:10567591) MGI PMID:10567591 NCBI chrNW_004624734:32,560,579...33,173,357 JBrowse link
G Rbbp6 RB binding protein 6, ubiquitin ligase acts_upstream_of_or_within ISO (PMID:17470788) MGI PMID:17470788 NCBI chrNW_004624782:9,559,333...9,592,648
Ensembl chrNW_004624782:9,558,768...9,594,961
JBrowse link
G Rcn1 reticulocalbin 1 acts_upstream_of_or_within ISO (PMID:19474196) MGI PMID:19474196 NCBI chrNW_004624766:20,732,395...20,740,256
Ensembl chrNW_004624766:20,732,396...20,740,839
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431
JBrowse link
G Resp18 regulated endocrine specific protein 18 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,688,508...5,693,522 JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO (PMID:16221497) MGI PMID:16221497 NCBI chrNW_004624766:22,234,484...22,240,874
Ensembl chrNW_004624766:22,234,484...22,240,940
JBrowse link
G Rnaseh2b ribonuclease H2 subunit B acts_upstream_of_or_within ISO (PMID:22802351) MGI PMID:22802351 NCBI chrNW_004624748:3,246,707...3,339,443 JBrowse link
G Rpa1 replication protein A1 acts_upstream_of_or_within ISO (PMID:15470499) MGI PMID:15470499 NCBI chrNW_004624786:4,547,889...4,604,605
Ensembl chrNW_004624786:4,547,962...4,604,290
JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17553904) MGI PMID:17553904 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115
JBrowse link
G Rrn3 RNA polymerase I transcription factor RRN3 acts_upstream_of_or_within ISO (PMID:15989966) MGI PMID:15989966 NCBI chrNW_004624824:8,582,754...8,615,073
Ensembl chrNW_004624824:8,582,803...8,614,313
JBrowse link
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase acts_upstream_of_or_within ISO (PMID:20510672) MGI PMID:20510672 NCBI chrNW_004624750:2,045,093...2,062,640
Ensembl chrNW_004624750:2,045,092...2,064,233
JBrowse link
G Rundc1 RUN domain containing 1 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624795:1,270,646...1,281,535
Ensembl chrNW_004624795:1,273,750...1,281,492
JBrowse link
G Rxra retinoid X receptor alpha acts_upstream_of_or_within ISO (PMID:9892670) MGI PMID:9892670 NCBI chrNW_004624760:2,379,809...2,455,749
Ensembl chrNW_004624760:2,380,708...2,456,928
JBrowse link
G Rxrb retinoid X receptor beta acts_upstream_of_or_within ISO (PMID:9892670) MGI PMID:9892670 NCBI chrNW_004624754:23,607,046...23,613,399
Ensembl chrNW_004624754:23,606,955...23,613,508
JBrowse link
G Sall4 spalt like transcription factor 4 acts_upstream_of_or_within ISO (PMID:17060609) MGI PMID:17060609 NCBI chrNW_004624790:4,153,157...4,170,813
Ensembl chrNW_004624790:4,162,454...4,170,923
JBrowse link
G Sec24c SEC24 homolog C, COPII coat complex component acts_upstream_of_or_within ISO (PMID:24876386) MGI PMID:24876386 NCBI chrNW_004624754:7,261,770...7,288,874
Ensembl chrNW_004624754:7,261,511...7,288,869
JBrowse link
G Sec24d SEC24 homolog D, COPII coat complex component acts_upstream_of_or_within ISO (PMID:24876386)
(PMID:23596517)
MGI PMID:23596517 PMID:24876386 NCBI chrNW_004624867:5,536,888...5,631,867 JBrowse link
G Sh3pxd2a SH3 and PX domains 2A acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624831:2,779,899...2,973,576
Ensembl chrNW_004624831:2,786,950...2,973,702
JBrowse link
G Sin3a SIN3 transcription regulator family member A acts_upstream_of_or_within ISO (PMID:15998811) MGI PMID:15998811 NCBI chrNW_004624894:300,027...388,397
Ensembl chrNW_004624894:301,082...362,683
JBrowse link
G Slc25a20 solute carrier family 25 member 20 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624730:2,833,785...2,860,711
Ensembl chrNW_004624730:2,832,233...2,860,796
JBrowse link
G Slc30a1 solute carrier family 30 member 1 acts_upstream_of_or_within ISO (PMID:15452870) MGI PMID:15452870 NCBI chrNW_004624771:17,262,933...17,269,795
Ensembl chrNW_004624771:17,262,866...17,270,340
JBrowse link
G Slc34a2 solute carrier family 34 member 2 acts_upstream_of_or_within ISO (PMID:19233126) MGI PMID:19233126 NCBI chrNW_004624755:6,829,197...6,849,898
Ensembl chrNW_004624755:6,830,056...6,842,910
JBrowse link
G Slc39a1 solute carrier family 39 member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624885:3,260,673...3,264,636
Ensembl chrNW_004624885:3,260,681...3,264,959
JBrowse link
G Slc39a3 solute carrier family 39 member 3 acts_upstream_of_or_within ISO (PMID:16652366) MGI PMID:16652366 NCBI chrNW_004624828:5,819,220...5,827,875
Ensembl chrNW_004624828:5,820,306...5,827,846
JBrowse link
G Slc5a7 solute carrier family 5 member 7 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624749:11,347,602...11,371,113
Ensembl chrNW_004624749:11,347,609...11,371,330
JBrowse link
G Slit2 slit guidance ligand 2 acts_upstream_of_or_within ISO (PMID:18829537) MGI PMID:18829537 NCBI chrNW_004624755:11,470,810...11,819,800
Ensembl chrNW_004624755:11,472,377...11,819,266
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371
JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:16287714)
(PMID:23319608)
MGI PMID:16287714 PMID:23319608 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968
JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624907:1,237,658...1,255,589
Ensembl chrNW_004624907:1,237,451...1,255,586
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:17881493) MGI PMID:17881493 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921
JBrowse link
G Smpd4 sphingomyelin phosphodiesterase 4 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624945:566,203...592,254 JBrowse link
G Sox10 SRY-box transcription factor 10 acts_upstream_of_or_within ISO (PMID:16790476) MGI PMID:16790476 NCBI chrNW_004624752:9,965,015...9,976,244
Ensembl chrNW_004624752:9,965,756...9,973,777
JBrowse link
G Sox18 SRY-box transcription factor 18 acts_upstream_of_or_within
NOT|acts_upstream_of_or_within
ISO (PMID:19429912)
(PMID:10742113)
(PMID:11094083)
(PMID:18931657)
MGI PMID:10742113 PMID:11094083 PMID:18931657 PMID:19429912 NCBI chrNW_004624741:29,679,274...29,681,069
Ensembl chrNW_004624741:29,679,091...29,681,049
JBrowse link
G Sox5 SRY-box transcription factor 5 acts_upstream_of_or_within ISO (PMID:17084361) MGI PMID:17084361 NCBI chrNW_004624752:14,986,146...15,382,687
Ensembl chrNW_004624752:14,985,942...15,378,465
JBrowse link
G Sox6 SRY-box transcription factor 6 acts_upstream_of_or_within ISO (PMID:17084361) MGI PMID:17084361 NCBI chrNW_004624766:7,683,492...8,301,823
Ensembl chrNW_004624766:7,689,775...8,084,764
JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (PMID:16790476) MGI PMID:16790476 NCBI chrNW_004624913:1,759,460...1,764,242
Ensembl chrNW_004624913:1,759,548...1,764,344
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624904:1,475,664...1,507,588 JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624787:11,144,581...11,193,520 JBrowse link
G Speg striated muscle enriched protein kinase acts_upstream_of_or_within ISO (PMID:19118250) MGI PMID:19118250 NCBI chrNW_004624823:5,563,687...5,618,786
Ensembl chrNW_004624823:5,564,550...5,618,786
JBrowse link
G Srf serum response factor acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9799237) MGI
UniProt
PMID:9799237 GO_REF:0000117 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
G Ssr2 signal sequence receptor subunit 2 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624885:1,365,651...1,372,778
Ensembl chrNW_004624885:1,364,563...1,372,466
JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004624859:5,510,442...5,572,122
Ensembl chrNW_004624859:5,510,384...5,572,228
JBrowse link
G Syf2 SYF2 pre-mRNA splicing factor acts_upstream_of_or_within ISO (PMID:22448250) MGI PMID:22448250 NCBI chrNW_004624764:9,464,487...9,479,714
Ensembl chrNW_004624764:9,463,586...9,479,786
JBrowse link
G Syvn1 synoviolin 1 acts_upstream_of_or_within ISO (PMID:15611074) MGI PMID:15611074 NCBI chrNW_004624767:21,269,909...21,276,739
Ensembl chrNW_004624767:21,270,841...21,275,653
JBrowse link
G Tab1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 acts_upstream_of_or_within ISO (PMID:12464436) MGI PMID:12464436 NCBI chrNW_004624752:8,912,467...8,937,313
Ensembl chrNW_004624752:8,913,900...8,937,329
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:28893950) MGI PMID:28893950 NCBI chrNW_004624817:8,103,065...8,104,435
Ensembl chrNW_004624817:8,103,065...8,104,420
JBrowse link
G Tanc2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 acts_upstream_of_or_within ISO (PMID:21068316) MGI PMID:21068316 NCBI chrNW_004624849:452,848...946,511
Ensembl chrNW_004624849:452,884...940,686
JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:17473172) MGI PMID:17473172 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624737:33,341,574...33,526,814
Ensembl chrNW_004624737:33,341,029...33,526,928
JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO (PMID:16357211) MGI PMID:16357211 NCBI chrNW_004624747:21,259,515...21,300,180
Ensembl chrNW_004624747:21,265,197...21,300,149
JBrowse link
G Tead4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO (PMID:18083014) MGI PMID:18083014 NCBI chrNW_004624860:314,404...368,212
Ensembl chrNW_004624860:297,601...368,274
JBrowse link
G Tent5c terminal nucleotidyltransferase 5C acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624772:13,348,302...13,378,095
Ensembl chrNW_004624772:13,348,369...13,366,076
JBrowse link
G Terf2 telomeric repeat binding factor 2 acts_upstream_of_or_within ISO (PMID:15968270) MGI PMID:15968270 NCBI chrNW_004624746:16,992,049...17,020,809
Ensembl chrNW_004624746:16,992,110...17,019,857
JBrowse link
G Tgfb3 transforming growth factor beta 3 acts_upstream_of_or_within ISO (PMID:14729481) MGI PMID:14729481 NCBI chrNW_004624734:25,717,011...25,739,942
Ensembl chrNW_004624734:25,716,972...25,739,199
JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:14729481)
(PMID:11285230)
(PMID:17078885)
MGI PMID:11285230 PMID:14729481 PMID:17078885 NCBI chrNW_004624825:1,773,158...1,899,120
Ensembl chrNW_004624825:1,839,178...1,899,156
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 acts_upstream_of_or_within ISO (PMID:18990706)
(PMID:10030593)
MGI PMID:10030593 PMID:18990706 NCBI chrNW_004624788:8,447,679...8,535,821
Ensembl chrNW_004624788:8,447,542...8,535,959
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (PMID:17704211) MGI PMID:17704211 NCBI chrNW_004624742:5,871,155...6,080,773 JBrowse link
G Tie1 tyrosine kinase with immunoglobulin like and EGF like domains 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624892:2,626,999...2,645,841
Ensembl chrNW_004624892:2,626,875...2,645,841
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955
JBrowse link
G Tmem100 transmembrane protein 100 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:10,938,521...10,944,919
Ensembl chrNW_004624795:10,938,366...10,945,021
JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within ISO (PMID:22179047) MGI PMID:22179047 NCBI chrNW_004624746:11,411,050...11,427,945
Ensembl chrNW_004624746:11,411,107...11,427,943
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within
NOT|acts_upstream_of_or_within
ISO (PMID:9288110)
(PMID:26334721)
(PMID:17325035)
(PMID:9425892)
MGI PMID:9288110 PMID:9425892 PMID:17325035 PMID:26334721 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218
JBrowse link
G Tpm1 tropomyosin 1 acts_upstream_of_or_within ISO (PMID:9440710) MGI PMID:9440710 NCBI chrNW_004624781:9,414,500...9,442,357
Ensembl chrNW_004624781:9,414,500...9,442,544
JBrowse link
G Traf6 TNF receptor associated factor 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:10,729,766...10,803,253
Ensembl chrNW_004624767:10,729,413...10,748,455
JBrowse link
G Trim28 tripartite motif containing 28 acts_upstream_of_or_within ISO (PMID:22442485) MGI PMID:22442485 NCBI chrNW_004624832:49,324...56,113 JBrowse link
G Tshz3 teashirt zinc finger homeobox 3 acts_upstream_of_or_within ISO (PMID:18776146) MGI PMID:18776146 NCBI chrNW_004624794:6,279,964...6,351,026
Ensembl chrNW_004624794:6,280,513...6,350,727
JBrowse link
G Ttn titin acts_upstream_of_or_within ISO (PMID:16702235) MGI PMID:16702235 NCBI chrNW_004624844:484,593...760,155 JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809
JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A NOT|acts_upstream_of_or_within ISO (PMID:15169909) MGI PMID:15169909 NCBI chrNW_004624895:3,544,410...3,553,981 JBrowse link
G Ube2b ubiquitin conjugating enzyme E2 B acts_upstream_of_or_within ISO (PMID:15169909) MGI PMID:15169909 NCBI chrNW_004624733:37,890,350...37,907,846
Ensembl chrNW_004624733:37,891,280...37,906,066
JBrowse link
G Ubr3 ubiquitin protein ligase E3 component n-recognin 3 acts_upstream_of_or_within ISO (PMID:17462990) MGI PMID:17462990 NCBI chrNW_004624787:7,358,426...7,610,872
Ensembl chrNW_004624787:7,358,441...7,608,483
JBrowse link
G Unk unk zinc finger acts_upstream_of_or_within ISO (PMID:27996060) MGI PMID:27996060 NCBI chrNW_004624801:5,676,546...5,720,483
Ensembl chrNW_004624801:5,676,521...5,719,128
JBrowse link
G Upb1 beta-ureidopropionase 1 ISO RGD PMID:6870258 RGD:2317093 NCBI chrNW_004624747:9,911,323...9,940,770
Ensembl chrNW_004624747:9,911,448...9,940,537
JBrowse link
G Upf3a UPF3A regulator of nonsense mediated mRNA decay acts_upstream_of ISO (PMID:27040500) MGI PMID:27040500 NCBI chrNW_004624793:134,607...151,730
Ensembl chrNW_004624793:136,642...151,692
JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked acts_upstream_of_or_within ISO (PMID:23861879) MGI PMID:23861879 NCBI chrNW_004624762:14,403,361...14,527,854
Ensembl chrNW_004624762:14,405,560...14,527,639
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO (PMID:10229225) MGI PMID:10229225 NCBI chrNW_004624754:15,929,414...15,943,637 JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in ISO (PMID:16244655) MGI PMID:16244655 NCBI chrNW_004624762:9,457,283...9,570,311
Ensembl chrNW_004624762:9,457,705...9,563,779
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997
JBrowse link
G Wdtc1 WD and tetratricopeptide repeats 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:11,151,890...11,214,716
Ensembl chrNW_004624764:11,167,206...11,214,844
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:4819561) MGI PMID:4819561 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458
JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO (PMID:18367557) MGI PMID:18367557 NCBI chrNW_004624752:3,818,073...3,856,602
Ensembl chrNW_004624752:3,818,025...3,857,027
JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:16054034) MGI PMID:16054034 NCBI chrNW_004624849:2,971,658...2,979,864
Ensembl chrNW_004624849:2,957,153...2,976,179
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624800:4,352,566...4,389,707
Ensembl chrNW_004624800:4,355,539...4,390,016
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 acts_upstream_of_or_within ISO (PMID:9875844) MGI PMID:9875844 NCBI chrNW_004624743:3,299,329...3,549,182
Ensembl chrNW_004624743:3,317,351...3,552,161
JBrowse link
G Ybx1 Y-box binding protein 1 acts_upstream_of_or_within ISO (PMID:16954378) MGI PMID:16954378 NCBI chrNW_004624892:1,939,641...1,957,621
Ensembl chrNW_004624892:1,939,098...1,957,623
JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 acts_upstream_of_or_within ISO (PMID:29799838) MGI PMID:29799838 NCBI chrNW_004624761:346,268...374,954 JBrowse link
G Zbtb18 zinc finger and BTB domain containing 18 acts_upstream_of_or_within ISO (PMID:19409883) MGI PMID:19409883 NCBI chrNW_004624771:15,425,610...15,432,012
Ensembl chrNW_004624771:15,425,604...15,430,542
JBrowse link
G Zfand5 zinc finger AN1-type containing 5 acts_upstream_of_or_within ISO (PMID:17143286) MGI PMID:17143286 NCBI chrNW_004624736:611,726...621,360 JBrowse link
G Zfp14 ZFP14 zinc finger protein involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624794:10,717,241...10,796,502 JBrowse link
G Zfp42 ZFP42 zinc finger protein acts_upstream_of_or_within ISO (PMID:21233130) MGI PMID:21233130 NCBI chrNW_004624769:18,933,990...18,935,008
Ensembl chrNW_004624769:18,934,076...18,935,002
JBrowse link
G Zfpm2 zinc finger protein, FOG family member 2 acts_upstream_of_or_within ISO (PMID:16103912) MGI PMID:16103912 NCBI chrNW_004624763:21,388,060...21,708,969
Ensembl chrNW_004624763:21,388,244...21,707,953
JBrowse link
G Zmiz1 zinc finger MIZ-type containing 1 acts_upstream_of_or_within ISO (PMID:17967885) MGI PMID:17967885 NCBI chrNW_004624754:12,106,828...12,299,188
Ensembl chrNW_004624754:12,145,570...12,299,318
JBrowse link
G Znf335 zinc finger protein 335 acts_upstream_of_or_within ISO (PMID:23178126) MGI PMID:23178126 NCBI chrNW_004624790:8,624,316...8,646,712
Ensembl chrNW_004624790:8,625,150...8,647,441
JBrowse link
G Znf568 zinc finger protein 568 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624794:10,830,276...10,905,911 JBrowse link
G Znf721 zinc finger protein 721 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624755:26,551,461...26,621,479 JBrowse link
ingression involved in gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:27870829) UniProt PMID:27870829 NCBI chrNW_004624760:11,576,683...11,598,354
Ensembl chrNW_004624760:11,579,163...11,598,287
JBrowse link
inhibition of neuroepithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:16495313) MGI PMID:16495313 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404
JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:10952889) MGI PMID:10952889 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781
JBrowse link
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:15064243) MGI PMID:15064243 NCBI chrNW_004624741:11,647,723...11,683,137
Ensembl chrNW_004624741:11,647,463...11,683,488
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:16678814) MGI PMID:16678814 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:15064243) MGI PMID:15064243 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531
JBrowse link
initiation of neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) BHF-UCL PMID:21220025 NCBI chrNW_004624747:21,922,249...22,047,246 JBrowse link
inner cell mass cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 component of Paf1/RNA polymerase II complex acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:2,823,561...2,851,742
Ensembl chrNW_004624766:2,823,229...2,851,742
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:10518496) MGI PMID:10518496 NCBI chrNW_004624871:4,662,104...4,713,125
Ensembl chrNW_004624871:4,661,669...4,712,960
JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO (PMID:16611995) MGI PMID:16611995 NCBI chrNW_004624875:2,997,648...3,006,345
Ensembl chrNW_004624875:2,998,006...3,006,303
JBrowse link
G Nr5a2 nuclear receptor subfamily 5 group A member 2 involved_in ISO (PMID:38243114), (PMID:38386558) UniProt PMID:38243114 PMID:38386558 NCBI chrNW_004624798:356,953...494,877 JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:19372391)
(PMID:20639862), (PMID:21295276)
UniProt
MGI
PMID:19372391 PMID:20639862 PMID:21295276 NCBI chrNW_004624754:2,846,479...2,966,845
Ensembl chrNW_004624754:2,873,456...2,965,097
JBrowse link
G Tfap2c transcription factor AP-2 gamma involved_in ISO (PMID:38243114) UniProt PMID:38243114 NCBI chrNW_004624741:23,286,526...23,299,318
Ensembl chrNW_004624741:23,290,519...23,298,121
JBrowse link
inner cell mass cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lats1 large tumor suppressor kinase 1 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624785:8,356,238...8,405,877
Ensembl chrNW_004624785:8,369,922...8,408,919
JBrowse link
G Lats2 large tumor suppressor kinase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23824537) MGI
UniProt
PMID:23824537 GO_REF:0000117 NCBI chrNW_004624776:16,572,598...16,640,412
Ensembl chrNW_004624776:16,585,025...16,638,520
JBrowse link
G Prdm14 PR/SET domain 14 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624744:21,092,091...21,121,313
Ensembl chrNW_004624744:21,104,798...21,120,591
JBrowse link
inner cell mass cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2 DNA repair associated acts_upstream_of_or_within ISO (PMID:9171369) MGI PMID:9171369 NCBI chrNW_004624776:5,497,552...5,573,465
Ensembl chrNW_004624776:5,497,779...5,550,993
JBrowse link
G Brd4 bromodomain containing 4 acts_upstream_of_or_within ISO (PMID:11997514) MGI PMID:11997514 NCBI chrNW_004624901:2,348,218...2,434,429
Ensembl chrNW_004624901:2,346,734...2,380,852
JBrowse link
G Chek1 checkpoint kinase 1 acts_upstream_of_or_within ISO (PMID:10859163) MGI PMID:10859163 NCBI chrNW_004624927:1,609,404...1,643,409
Ensembl chrNW_004624927:1,610,878...1,643,409
JBrowse link
G Cops2 COP9 signalosome subunit 2 acts_upstream_of_or_within ISO (PMID:12972599) MGI PMID:12972599 NCBI chrNW_004624731:10,652,556...10,679,481
Ensembl chrNW_004624731:10,652,628...10,678,353
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 acts_upstream_of_or_within ISO (PMID:15452149) MGI PMID:15452149 NCBI chrNW_004624737:24,135,083...24,164,935 JBrowse link
G Gins1 GINS complex subunit 1 acts_upstream_of_or_within ISO (PMID:16287864) MGI PMID:16287864 NCBI chrNW_004624939:177,496...212,804
Ensembl chrNW_004624939:176,929...205,642
JBrowse link
G Gins4 GINS complex subunit 4 acts_upstream_of_or_within ISO (PMID:24244394) MGI PMID:24244394 NCBI chrNW_004624780:1,735,454...1,749,219
Ensembl chrNW_004624780:1,735,220...1,749,220
JBrowse link
G Ints1 integrator complex subunit 1 acts_upstream_of_or_within ISO (PMID:17544522) MGI PMID:17544522 NCBI chrNW_004624740:26,952,076...26,983,595
Ensembl chrNW_004624740:26,956,688...26,983,394
JBrowse link
G Ncapg2 non-SMC condensin II complex subunit G2 acts_upstream_of_or_within ISO (PMID:14729962) MGI PMID:14729962 NCBI chrNW_004624800:432,307...494,361
Ensembl chrNW_004624800:432,258...498,718
JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 acts_upstream_of_or_within ISO (PMID:16107726) MGI PMID:16107726 NCBI chrNW_004624786:10,981,963...11,039,504
Ensembl chrNW_004624786:11,000,615...11,034,689
JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO (PMID:20484223) MGI PMID:20484223 NCBI chrNW_004624782:8,752,510...8,780,972
Ensembl chrNW_004624782:8,751,866...8,780,884
JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor acts_upstream_of_or_within ISO (PMID:12556505) MGI PMID:12556505 NCBI chrNW_004624759:6,525,529...6,527,320
Ensembl chrNW_004624759:6,525,418...6,527,322
JBrowse link
G Sall4 spalt like transcription factor 4 acts_upstream_of_or_within ISO (PMID:16790473) MGI PMID:16790473 NCBI chrNW_004624790:4,153,157...4,170,813
Ensembl chrNW_004624790:4,162,454...4,170,923
JBrowse link
G Sbds SBDS ribosome maturation factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624740:8,734,547...8,740,634
Ensembl chrNW_004624740:8,734,546...8,740,652
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 acts_upstream_of_or_within ISO (PMID:14993285) MGI PMID:14993285 NCBI chrNW_004624772:18,855,405...18,894,285
Ensembl chrNW_004624772:18,855,332...18,894,226
JBrowse link
G Taf8 TATA-box binding protein associated factor 8 acts_upstream_of_or_within ISO (PMID:11076765) MGI PMID:11076765 NCBI chrNW_004624754:17,136,791...17,147,991
Ensembl chrNW_004624754:17,135,101...17,147,982
JBrowse link
G Zpr1 ZPR1 zinc finger involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:12,202,519...12,212,257
Ensembl chrNW_004624784:12,202,519...12,213,120
JBrowse link
inner cell mass cellular morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lats1 large tumor suppressor kinase 1 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624785:8,356,238...8,405,877
Ensembl chrNW_004624785:8,369,922...8,408,919
JBrowse link
G Lats2 large tumor suppressor kinase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23824537) MGI
UniProt
PMID:23824537 GO_REF:0000117 NCBI chrNW_004624776:16,572,598...16,640,412
Ensembl chrNW_004624776:16,585,025...16,638,520
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:21146513) MGI PMID:21146513 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
inner ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abr ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO (PMID:11921339) MGI PMID:11921339 NCBI chrNW_004624786:3,121,282...3,319,804
Ensembl chrNW_004624786:3,174,989...3,319,804
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624768:3,851,361...3,885,609
Ensembl chrNW_004624768:3,851,257...3,885,609
JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:16145671)
(PMID:15543141)
MGI PMID:15543141 PMID:16145671 NCBI chrNW_004624757:21,517,650...21,519,543
Ensembl chrNW_004624757:21,517,809...21,518,864
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:9668038) MGI PMID:9668038 NCBI chrNW_004624731:4,836,109...5,190,990
Ensembl chrNW_004624731:5,029,421...5,190,996
JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 NOT|involved_in ISO (PMID:12782355)
(PMID:19639346)
UniProt PMID:12782355 PMID:19639346 NCBI chrNW_004624762:2,445,840...2,480,377
Ensembl chrNW_004624762:2,443,765...2,480,464
JBrowse link
G Bcr BCR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO (PMID:11921339) MGI PMID:11921339 NCBI chrNW_004624747:9,528,968...9,664,055
Ensembl chrNW_004624747:9,528,996...9,662,131
JBrowse link
G Cdh23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:15925194)
(PMID:7610888)
MGI PMID:7610888 PMID:15925194 MGI:61210 NCBI chrNW_004624754:5,356,006...5,725,774
Ensembl chrNW_004624754:5,393,733...5,724,876
JBrowse link
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO (PMID:12842012) MGI PMID:12842012 NCBI chrNW_004624752:3,426,317...3,537,219
Ensembl chrNW_004624752:3,425,901...3,535,400
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15353999) MGI
UniProt
PMID:15353999 GO_REF:0000117 NCBI chrNW_004624744:31,103,053...31,302,314
Ensembl chrNW_004624744:31,103,059...31,235,623
JBrowse link
G Chrna10 cholinergic receptor nicotinic alpha 10 subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624817:5,109,448...5,125,469
Ensembl chrNW_004624817:5,109,452...5,116,528
JBrowse link
G Chrna9 cholinergic receptor nicotinic alpha 9 subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624761:26,636,242...26,646,072
Ensembl chrNW_004624761:26,636,506...26,645,471
JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO (PMID:1952599) MGI PMID:1952599 NCBI chrNW_004624857:5,817,472...6,176,421
Ensembl chrNW_004624857:5,817,475...6,029,107
JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO (PMID:9165353) MGI PMID:9165353 NCBI chrNW_004624816:4,273,969...4,304,519
Ensembl chrNW_004624816:4,274,219...4,304,513
JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624813:3,760,890...3,765,309
Ensembl chrNW_004624813:3,760,661...3,765,517
JBrowse link
G Dlx6 distal-less homeobox 6 acts_upstream_of_or_within ISO (PMID:16900517) MGI PMID:16900517 NCBI chrNW_004624813:3,746,040...3,751,542
Ensembl chrNW_004624813:3,746,046...3,752,905
JBrowse link
G Ephb2 EPH receptor B2 involved_in ISO (PMID:10839360) UniProt PMID:10839360 NCBI chrNW_004624764:7,421,818...7,599,800
Ensembl chrNW_004624764:7,421,862...7,593,482
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:16916509)
(PMID:15817220)
(PMID:10471511)
MGI PMID:10471511 PMID:15817220 PMID:16916509 NCBI chrNW_004624744:19,782,174...19,975,496
Ensembl chrNW_004624744:19,782,790...19,977,335
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:15809037) MGI PMID:15809037 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741
JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624776:16,022,118...16,055,413
Ensembl chrNW_004624776:16,019,835...16,055,498
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (PMID:12194867) MGI PMID:12194867 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:10934262) MGI PMID:10934262 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO (PMID:16691564) MGI PMID:16691564 NCBI chrNW_004624820:3,542,767...3,547,180
Ensembl chrNW_004624820:3,543,687...3,545,147
JBrowse link
G Foxi1 forkhead box I1 acts_upstream_of_or_within ISO (PMID:12642503) MGI PMID:12642503 NCBI chrNW_004624733:19,860,586...19,864,522
Ensembl chrNW_004624733:19,859,972...19,864,359
JBrowse link
G Frzb frizzled related protein acts_upstream_of_or_within ISO (PMID:18991062) MGI PMID:18991062 NCBI chrNW_004624844:4,608,016...4,639,582
Ensembl chrNW_004624844:4,608,016...4,643,141
JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within ISO (PMID:16495441) MGI PMID:16495441 NCBI chrNW_004624758:23,147,512...23,240,711
Ensembl chrNW_004624758:23,147,452...23,230,879
JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO (PMID:16495441) MGI PMID:16495441 NCBI chrNW_004624763:19,861,837...19,888,626 JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO (PMID:20652952) MGI PMID:20652952 NCBI chrNW_004624961:147,685...155,614
Ensembl chrNW_004624961:143,358...154,003
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624775:2,985,077...3,014,567
Ensembl chrNW_004624775:2,994,164...3,015,392
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:15829521), (PMID:15996652) MGI PMID:15829521 PMID:15996652 NCBI chrNW_004624847:1,878,946...1,881,794
Ensembl chrNW_004624847:1,879,007...1,881,669
JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO (PMID:12441305) MGI PMID:12441305 NCBI chrNW_004624742:5,260,651...5,271,908
Ensembl chrNW_004624742:5,261,537...5,270,695
JBrowse link
G Hmx2 H6 family homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624737:23,862,661...23,871,723
Ensembl chrNW_004624737:23,861,756...23,871,804
JBrowse link
G Hmx3 H6 family homeobox 3 acts_upstream_of_or_within ISO (PMID:9435283)
(PMID:15363417)
MGI PMID:9435283 PMID:15363417 NCBI chrNW_004624737:23,873,168...23,878,302
Ensembl chrNW_004624737:23,875,936...23,877,765
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO (PMID:15367676) MGI PMID:15367676 NCBI chrNW_004624739:3,509,020...3,511,890
Ensembl chrNW_004624739:3,508,838...3,511,864
JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO (PMID:16955138) MGI PMID:16955138 NCBI chrNW_004624800:2,533,010...2,543,754
Ensembl chrNW_004624800:2,534,967...2,543,075
JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within ISO (PMID:16955138) MGI PMID:16955138 NCBI chrNW_004624732:27,089,776...27,110,170
Ensembl chrNW_004624732:27,087,674...27,104,181
JBrowse link
G Itga8 integrin subunit alpha 8 acts_upstream_of_or_within ISO (PMID:10742111) MGI PMID:10742111 NCBI chrNW_004624796:11,908,927...12,103,806
Ensembl chrNW_004624796:11,908,964...12,101,139
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in ISO (PMID:11226272) MGI PMID:11226272 NCBI chrNW_004624767:15,252,961...15,613,373
Ensembl chrNW_004624767:15,252,950...15,613,562
JBrowse link
G Kcnq4 potassium voltage-gated channel subfamily Q member 4 acts_upstream_of_or_within ISO (PMID:16437162) MGI PMID:16437162 NCBI chrNW_004624892:226,324...275,198
Ensembl chrNW_004624892:226,324...275,195
JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO (PMID:16325169) MGI PMID:16325169 NCBI chrNW_004624919:1,337,269...1,340,607
Ensembl chrNW_004624919:1,339,228...1,340,208
JBrowse link
G Myo15a myosin XVA acts_upstream_of_or_within ISO (PMID:11718241), (PMID:14724386) MGI PMID:11718241 PMID:14724386 NCBI chrNW_004624849:3,283,180...3,345,456
Ensembl chrNW_004624849:3,284,085...3,344,759
JBrowse link
G Myo6 myosin VI acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:7493015) MGI
TreeGrafter
PMID:7493015 GO_REF:0000118 NCBI chrNW_004624819:2,835,783...2,999,819
Ensembl chrNW_004624819:2,896,374...2,999,819
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO (PMID:11753415)
(PMID:15389316)
(PMID:5795329)
MGI PMID:5795329 PMID:11753415 PMID:15389316 NCBI chrNW_004624863:205,468...283,840
Ensembl chrNW_004624863:205,478...283,839
JBrowse link
G Neurog1 neurogenin 1 acts_upstream_of_or_within
involved_in
IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,497,872...11,499,957
Ensembl chrNW_004624733:11,498,249...11,498,974
JBrowse link
G Nr4a3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:11784868) MGI PMID:11784868 NCBI chrNW_004624825:1,098,915...1,141,373
Ensembl chrNW_004624825:1,097,432...1,141,446
JBrowse link
G Ntn1 netrin 1 acts_upstream_of_or_within ISO (PMID:17616930) MGI PMID:17616930 NCBI chrNW_004624786:11,508,643...11,707,060
Ensembl chrNW_004624786:11,526,050...11,703,258
JBrowse link
G Otop1 otopetrin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:12651873) MGI
TreeGrafter
PMID:12651873 GO_REF:0000118 NCBI chrNW_004624755:21,377,288...21,403,621
Ensembl chrNW_004624755:21,377,721...21,403,621
JBrowse link
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:10,379,775...10,388,262
Ensembl chrNW_004624762:10,379,917...10,386,708
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:10225993) MGI PMID:10225993 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Pax2 paired box 2 acts_upstream_of_or_within
involved_in
ISO (PMID:15242798)
(PMID:16916509)
(PMID:20727173)
(PMID:8951055)
MGI
UniProt
DFLAT
PMID:8951055 PMID:15242798 PMID:16916509 PMID:20727173 NCBI chrNW_004624831:375,851...453,968
Ensembl chrNW_004624831:375,866...453,930
JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624749:13,291,880...13,358,066
Ensembl chrNW_004624749:13,300,606...13,357,903
JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624774:5,821,024...5,822,351
Ensembl chrNW_004624774:5,821,024...5,822,351
JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO (PMID:9729491) MGI PMID:9729491 NCBI chrNW_004624826:8,361,039...8,435,488
Ensembl chrNW_004624826:8,361,033...8,435,656
JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491) MGI PMID:9729491 NCBI chrNW_004624760:5,656,456...5,684,383
Ensembl chrNW_004624760:5,656,521...5,692,934
JBrowse link
G Ptprq protein tyrosine phosphatase receptor type Q acts_upstream_of_or_within ISO (PMID:14534255) MGI PMID:14534255 NCBI chrNW_004624750:17,621,520...17,863,902
Ensembl chrNW_004624750:17,622,627...17,863,899
JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:18606138) MGI PMID:18606138 NCBI chrNW_004624868:479,303...732,723
Ensembl chrNW_004624868:479,290...731,650
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671
JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO (PMID:15788460) MGI PMID:15788460 NCBI chrNW_004624734:40,397,276...40,409,951
Ensembl chrNW_004624734:40,397,559...40,409,997
JBrowse link
G Slitrk6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:19936227) MGI PMID:19936227 NCBI chrNW_004624779:7,030,017...7,036,581
Ensembl chrNW_004624779:7,030,395...7,036,108
JBrowse link
G Sobp sine oculis binding protein homolog acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:16962269) MGI
TreeGrafter
PMID:16962269 GO_REF:0000118 NCBI chrNW_004624780:14,618,283...14,773,190
Ensembl chrNW_004624780:14,616,469...14,773,237
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:15846349) MGI PMID:15846349 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871
JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624751:20,091,612...20,096,581
Ensembl chrNW_004624751:20,091,609...20,096,563
JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:16600992)
(PMID:12913075)
(PMID:15084464)
(PMID:15652707)
MGI PMID:12913075 PMID:15084464 PMID:15652707 PMID:16600992 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:33795231) UniProt PMID:33795231 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:21204207) UniProt PMID:21204207 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379
JBrowse link
G Tifab TIFA inhibitor involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004624733:11,578,934...11,587,250 JBrowse link
G Tmie transmembrane inner ear acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:12140191) MGI
TreeGrafter
PMID:12140191 GO_REF:0000118 NCBI chrNW_004624730:74,498,257...74,506,180
Ensembl chrNW_004624730:74,498,281...74,505,041
JBrowse link
G Ush1c USH1 protein network component harmonin acts_upstream_of_or_within ISO (PMID:14519688) MGI PMID:14519688 NCBI chrNW_004624766:9,097,466...9,153,602
Ensembl chrNW_004624766:9,105,990...9,153,663
JBrowse link
G Ush1g USH1 protein network component sans acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:4,747,260...4,761,223
Ensembl chrNW_004624801:4,755,688...4,761,180
JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:15961523) MGI PMID:15961523 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:18991062) MGI PMID:18991062 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO (PMID:10021330) UniProt PMID:10021330 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
labyrinthine layer blood vessel development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 acts_upstream_of_or_within ISO (PMID:12783884) MGI PMID:12783884 NCBI chrNW_004624734:507,880...525,295
Ensembl chrNW_004624734:509,368...525,295
JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:12446788) MGI PMID:12446788 NCBI chrNW_004624742:11,882,815...11,885,686
Ensembl chrNW_004624742:11,882,907...11,885,667
JBrowse link
G Esx1 ESX homeobox 1 acts_upstream_of_or_within ISO (PMID:9806555) MGI PMID:9806555 NCBI chrNW_004624803:12,854,472...12,860,621 JBrowse link
G Fbxw8 F-box and WD repeat domain containing 8 acts_upstream_of_or_within ISO (PMID:16880526) MGI PMID:16880526 NCBI chrNW_004624747:16,226,025...16,343,839
Ensembl chrNW_004624747:16,233,312...16,343,824
JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO (PMID:11092808) MGI PMID:11092808 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050
JBrowse link
G Ggnbp2 gametogenetin binding protein 2 acts_upstream_of_or_within ISO (PMID:26764350) MGI PMID:26764350 NCBI chrNW_004624871:3,624,107...3,661,004
Ensembl chrNW_004624871:3,624,106...3,661,392
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in ISO (PMID:20122914) BHF-UCL PMID:20122914 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781
JBrowse link
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 involved_in ISO (PMID:15107403) BHF-UCL PMID:15107403 NCBI chrNW_004624744:11,462,865...11,466,559
Ensembl chrNW_004624744:11,462,847...11,467,870
JBrowse link
G Hey2 hes related family bHLH transcription factor with YRPW motif 2 involved_in ISO (PMID:15107403) BHF-UCL PMID:15107403 NCBI chrNW_004624753:375,163...394,402
Ensembl chrNW_004624753:375,279...384,379
JBrowse link
G Hs6st1 heparan sulfate 6-O-sulfotransferase 1 acts_upstream_of_or_within ISO (PMID:17405882) MGI PMID:17405882 NCBI chrNW_004624732:17,210,315...17,249,930
Ensembl chrNW_004624732:17,209,984...17,250,358
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO (PMID:10022836) MGI PMID:10022836 NCBI chrNW_004624901:402,969...404,741
Ensembl chrNW_004624901:403,235...404,269
JBrowse link
G Llgl2 LLGL scribble cell polarity complex component 2 acts_upstream_of_or_within ISO (PMID:21606200) MGI PMID:21606200 NCBI chrNW_004624801:5,329,988...5,376,368
Ensembl chrNW_004624801:5,329,916...5,370,345
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 acts_upstream_of_or_within ISO (PMID:14622137) MGI PMID:14622137 NCBI chrNW_004624747:1,296,062...1,389,674
Ensembl chrNW_004624747:1,296,221...1,389,757
JBrowse link
G Ncoa6 nuclear receptor coactivator 6 acts_upstream_of_or_within ISO (PMID:12556486)
(PMID:12368298)
MGI PMID:12368298 PMID:12556486 NCBI chrNW_004624842:4,570,758...4,665,517 JBrowse link
G Nfe2 nuclear factor, erythroid 2 acts_upstream_of_or_within ISO (PMID:21558372) MGI PMID:21558372 NCBI chrNW_004624904:2,324,186...2,332,204
Ensembl chrNW_004624904:2,322,758...2,332,194
JBrowse link
G Nsdhl NAD(P) dependent 3-beta-hydroxysteroid dehydrogenase NSDHL acts_upstream_of_or_within ISO (PMID:17028112) MGI PMID:17028112 NCBI chrNW_004624883:4,039,876...4,062,309
Ensembl chrNW_004624883:4,039,898...4,066,123
JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (PMID:17573777) MGI PMID:17573777 NCBI chrNW_004624741:18,994,689...19,012,381
Ensembl chrNW_004624741:18,995,246...19,012,910
JBrowse link
G Plcd1 phospholipase C delta 1 acts_upstream_of_or_within ISO (PMID:16314520) MGI PMID:16314520 NCBI chrNW_004624773:20,108,383...20,130,630
Ensembl chrNW_004624773:20,108,004...20,130,630
JBrowse link
G Plcd3 phospholipase C delta 3 acts_upstream_of_or_within ISO (PMID:16314520) MGI PMID:16314520 NCBI chrNW_004624795:270,760...282,789
Ensembl chrNW_004624795:270,722...282,390
JBrowse link
G Plg plasminogen acts_upstream_of_or_within ISO (PMID:12900459) MGI PMID:12900459 NCBI chrNW_004624855:2,362,793...2,401,519
Ensembl chrNW_004624855:2,360,229...2,402,079
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region involved_in ISO (PMID:15466160) BHF-UCL PMID:15466160 NCBI chrNW_004624755:6,176,497...6,298,034
Ensembl chrNW_004624755:6,176,497...6,298,225
JBrowse link
G Syde1 synapse defective Rho GTPase activating protein 1 acts_upstream_of_or_within ISO (PMID:27917469) MGI PMID:27917469 NCBI chrNW_004624901:2,191,219...2,197,786
Ensembl chrNW_004624901:2,191,241...2,197,877
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 involved_in ISO (PMID:20178780) CACAO PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955
JBrowse link
G Vash1 vasohibin 1 acts_upstream_of_or_within ISO (PMID:25184477) MGI PMID:25184477 NCBI chrNW_004624734:25,034,266...25,053,409
Ensembl chrNW_004624734:25,034,266...25,053,398
JBrowse link
G Vash2 vasohibin 2 acts_upstream_of_or_within ISO (PMID:25184477) MGI PMID:25184477 NCBI chrNW_004624771:18,303,632...18,334,438
Ensembl chrNW_004624771:18,303,664...18,332,674
JBrowse link
G Wnt2 Wnt family member 2 acts_upstream_of_or_within ISO (PMID:8951051) MGI PMID:8951051 NCBI chrNW_004624827:2,045,733...2,088,284
Ensembl chrNW_004624827:2,045,595...2,089,442
JBrowse link
labyrinthine layer development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Birc6 baculoviral IAP repeat containing 6 acts_upstream_of_or_within ISO (PMID:15485903) MGI PMID:15485903 NCBI chrNW_004624738:13,990,997...14,246,741
Ensembl chrNW_004624738:13,991,022...14,246,225
JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within ISO (PMID:19853565) MGI PMID:19853565 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845
JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 acts_upstream_of_or_within ISO (PMID:14673158) MGI PMID:14673158 NCBI chrNW_004624903:2,596,049...2,601,315 JBrowse link
G Egln1 egl-9 family hypoxia inducible factor 1 acts_upstream_of_or_within ISO (PMID:16966370) MGI PMID:16966370 NCBI chrNW_004624775:18,325,135...18,369,504 JBrowse link
G Gab1 GRB2 associated binding protein 1 acts_upstream_of_or_within ISO (PMID:10779359) MGI PMID:10779359 NCBI chrNW_004624853:2,639,882...2,763,195
Ensembl chrNW_004624853:2,639,891...2,765,144
JBrowse link
G Ggnbp2 gametogenetin binding protein 2 acts_upstream_of_or_within ISO (PMID:26764350) MGI PMID:26764350 NCBI chrNW_004624871:3,624,107...3,661,004
Ensembl chrNW_004624871:3,624,106...3,661,392
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 acts_upstream_of_or_within ISO (PMID:10209122) MGI PMID:10209122 NCBI chrNW_004624781:6,222,365...6,285,398
Ensembl chrNW_004624781:6,222,365...6,285,531
JBrowse link
G Pcdh12 protocadherin 12 acts_upstream_of_or_within ISO (PMID:18477666) MGI PMID:18477666 NCBI chrNW_004624774:1,157,208...1,171,109
Ensembl chrNW_004624774:1,157,208...1,170,678
JBrowse link
G Rtl1 retrotransposon Gag like 1 acts_upstream_of_or_within ISO (PMID:26138477)
(PMID:28111885)
MGI PMID:26138477 PMID:28111885 NCBI chrNW_004624734:3,219,270...3,227,154 JBrowse link
G Senp2 SUMO specific peptidase 2 acts_upstream_of_or_within ISO (PMID:19090619) MGI PMID:19090619 NCBI chrNW_004624730:71,068,112...71,100,121
Ensembl chrNW_004624730:71,068,112...71,100,225
JBrowse link
G Syde1 synapse defective Rho GTPase activating protein 1 acts_upstream_of_or_within ISO (PMID:27917469) MGI PMID:27917469 NCBI chrNW_004624901:2,191,219...2,197,786
Ensembl chrNW_004624901:2,191,241...2,197,877
JBrowse link
G Vash2 vasohibin 2 acts_upstream_of_or_within ISO (PMID:25184477) MGI PMID:25184477 NCBI chrNW_004624771:18,303,632...18,334,438
Ensembl chrNW_004624771:18,303,664...18,332,674
JBrowse link
labyrinthine layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esx1 ESX homeobox 1 acts_upstream_of_or_within ISO (PMID:9806555) MGI PMID:9806555 NCBI chrNW_004624803:12,854,472...12,860,621 JBrowse link
G Gjb5 gap junction protein beta 5 acts_upstream_of_or_within ISO (PMID:17961533) MGI PMID:17961533 NCBI chrNW_004624764:17,807,943...17,811,404
Ensembl chrNW_004624764:17,808,161...17,811,372
JBrowse link
G Ncoa1 nuclear receptor coactivator 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624738:6,770,745...7,054,616
Ensembl chrNW_004624738:6,943,726...7,054,454
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 acts_upstream_of_or_within ISO (PMID:20685850) MGI PMID:20685850 NCBI chrNW_004624790:7,229,152...7,358,627
Ensembl chrNW_004624790:7,232,519...7,358,684
JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11124112) MGI PMID:11124112 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:28893950) MGI PMID:28893950 NCBI chrNW_004624817:8,103,065...8,104,435
Ensembl chrNW_004624817:8,103,065...8,104,420
JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624750:28,224,289...28,359,473 JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:11850194) BHF-UCL PMID:11850194 NCBI chrNW_004624771:19,188,543...19,238,621
Ensembl chrNW_004624771:19,196,366...19,233,338
JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Wnt2 Wnt family member 2 acts_upstream_of_or_within ISO (PMID:19686689) MGI PMID:19686689 NCBI chrNW_004624827:2,045,733...2,088,284
Ensembl chrNW_004624827:2,045,595...2,089,442
JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within ISO (PMID:19686689) MGI PMID:19686689 NCBI chrNW_004624772:8,305,042...8,319,882
Ensembl chrNW_004624772:8,304,708...8,319,349
JBrowse link
mammary gland bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:11782400) MGI PMID:11782400 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:7,929,997...8,004,235
Ensembl chrNW_004624732:7,929,583...8,005,072
JBrowse link
G Ahdc1 AT-hook DNA binding motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:11,416,674...11,482,622
Ensembl chrNW_004624764:11,416,674...11,482,601
JBrowse link
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within ISO (PMID:28911199) MGI PMID:28911199 NCBI chrNW_004624782:14,461,488...14,468,407
Ensembl chrNW_004624782:14,462,114...14,468,404
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:18462699), (PMID:7799920) MGI PMID:7799920 PMID:18462699 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:15843411) MGI PMID:15843411 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:17699604) MGI PMID:17699604 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within ISO (PMID:10772805) MGI PMID:10772805 NCBI chrNW_004624765:13,849,689...13,950,839
Ensembl chrNW_004624765:13,857,062...13,947,683
JBrowse link
G Chrd chordin acts_upstream_of_or_within ISO (PMID:12810603) MGI PMID:12810603 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843
JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:22072575), (PMID:27870829) UniProt PMID:22072575 PMID:27870829 NCBI chrNW_004624760:11,576,683...11,598,354
Ensembl chrNW_004624760:11,579,163...11,598,287
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982
JBrowse link
G Ecsit ECSIT signaling integrator acts_upstream_of_or_within ISO (PMID:14633973) MGI PMID:14633973 NCBI chrNW_004624828:3,264,054...3,276,270
Ensembl chrNW_004624828:3,264,149...3,269,030
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10716450) MGI
TreeGrafter
PMID:10716450 GO_REF:0000118 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321
JBrowse link
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (PMID:18462699) MGI PMID:18462699 NCBI chrNW_004624794:7,985,662...7,989,063
Ensembl chrNW_004624794:7,984,884...7,988,296
JBrowse link
G Gpi glucose-6-phosphate isomerase acts_upstream_of_or_within ISO (PMID:8922529) MGI PMID:8922529 NCBI chrNW_004624794:8,826,281...8,851,614
Ensembl chrNW_004624794:8,823,449...8,851,625
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:9500550) MGI PMID:9500550 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759
JBrowse link
G Inhba inhibin subunit beta A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624740:19,458,835...19,482,570
Ensembl chrNW_004624740:19,464,289...19,482,888
JBrowse link
G Macf1 microtubule actin crosslinking factor 1 acts_upstream_of_or_within ISO (PMID:16815997) MGI PMID:16815997 NCBI chrNW_004624764:21,663,516...22,015,866
Ensembl chrNW_004624764:21,782,162...22,014,676
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624768:16,832,008...16,834,697
Ensembl chrNW_004624768:16,830,795...16,834,798
JBrowse link
G Msgn1 mesogenin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624738:756,679...757,278
Ensembl chrNW_004624738:756,679...757,258
JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor acts_upstream_of_or_within ISO (PMID:9171370) MGI PMID:9171370 NCBI chrNW_004624747:5,923,827...6,011,276
Ensembl chrNW_004624747:5,923,834...6,011,939
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:18462699) MGI PMID:18462699 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Nr4a3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:13129926) MGI PMID:13129926 NCBI chrNW_004624825:1,098,915...1,141,373
Ensembl chrNW_004624825:1,097,432...1,141,446
JBrowse link
G Pofut2 protein O-fucosyltransferase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624745:30,648,423...30,658,862
Ensembl chrNW_004624745:30,644,681...30,658,909
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO (PMID:12004056) MGI PMID:12004056 NCBI chrNW_004624901:1,319,426...1,336,848
Ensembl chrNW_004624901:1,319,062...1,336,744
JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624870:3,552,608...3,575,461
Ensembl chrNW_004624870:3,552,745...3,574,880
JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:10477299) UniProt PMID:10477299 NCBI chrNW_004624735:12,579,963...12,583,128
Ensembl chrNW_004624735:12,579,956...12,581,736
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15084457) MGI PMID:15084457 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371
JBrowse link
G Snai1 snail family transcriptional repressor 1 involved_in ISO (PMID:11689706) UniProt PMID:11689706 NCBI chrNW_004624790:5,509,541...5,515,240
Ensembl chrNW_004624790:5,509,311...5,515,266
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:11060034), (PMID:9799237) MGI PMID:9799237 PMID:11060034 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
G Tbx19 T-box transcription factor 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624826:6,243,809...6,268,973
Ensembl chrNW_004624826:6,243,809...6,267,989
JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:13,169,096...13,174,498
Ensembl chrNW_004624782:13,169,719...13,174,056
JBrowse link
G Tbxt T-box transcription factor T involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624785:13,058,520...13,066,607
Ensembl chrNW_004624785:13,058,444...13,066,719
JBrowse link
G Tlx2 T cell leukemia homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624749:28,996,912...28,998,900
Ensembl chrNW_004624749:28,997,326...28,999,546
JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624770:18,047,790...18,081,559
Ensembl chrNW_004624770:18,047,810...18,081,761
JBrowse link
G Txnrd1 thioredoxin reductase 1 acts_upstream_of_or_within ISO (PMID:17697936) MGI PMID:17697936 NCBI chrNW_004624750:4,444,318...4,536,384
Ensembl chrNW_004624750:4,443,915...4,510,380
JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISO (PMID:19841259) UniProt PMID:19841259 NCBI chrNW_004624742:27,481,480...27,570,439
Ensembl chrNW_004624742:27,481,427...27,570,439
JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244
JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (PMID:7720590) MGI PMID:7720590 NCBI chrNW_004624785:13,058,520...13,066,607
Ensembl chrNW_004624785:13,058,444...13,066,719
JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:7799920) MGI PMID:7799920 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:22556407) MGI PMID:22556407 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO RGD PMID:7803853 RGD:632663 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:17881493) MGI PMID:17881493 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO (PMID:17624332) UniProt PMID:17624332 NCBI chrNW_004624802:2,337,344...2,468,757
Ensembl chrNW_004624802:2,337,464...2,467,990
JBrowse link
G Inhba inhibin subunit beta A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624740:19,458,835...19,482,570
Ensembl chrNW_004624740:19,464,289...19,482,888
JBrowse link
G Itga2 integrin subunit alpha 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624759:6,281,698...6,376,702
Ensembl chrNW_004624759:6,281,561...6,376,712
JBrowse link
G Itga3 integrin subunit alpha 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624795:6,062,438...6,092,556
Ensembl chrNW_004624795:6,062,290...6,092,557
JBrowse link
G Itga8 integrin subunit alpha 8 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624796:11,908,927...12,103,806
Ensembl chrNW_004624796:11,908,964...12,101,139
JBrowse link
G Itgb1 integrin subunit beta 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624805:8,748,848...8,800,259
Ensembl chrNW_004624805:8,765,949...8,802,149
JBrowse link
G Itgb3 integrin subunit beta 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624849:1,895,378...1,952,755
Ensembl chrNW_004624849:1,895,914...1,952,665
JBrowse link
G Itgb4 integrin subunit beta 4 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624801:5,613,752...5,646,046
Ensembl chrNW_004624801:5,613,861...5,650,214
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (PMID:22949634) MGI PMID:22949634 NCBI chrNW_004624887:1,065,173...1,279,660
Ensembl chrNW_004624887:1,065,883...1,279,186
JBrowse link
G Kdm6b lysine demethylase 6B involved_in ISO (PMID:23856522) BHF-UCL PMID:23856522 NCBI chrNW_004624786:10,413,670...10,435,118
Ensembl chrNW_004624786:10,425,816...10,433,806
JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nanog Nanog homeobox acts_upstream_of
acts_upstream_of_or_within
ISO (PMID:16801560) MGI PMID:16801560 NCBI chrNW_004624860:5,026,203...5,037,219 JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
G Smad1 SMAD family member 1 acts_upstream_of_or_within ISO (PMID:16801560) MGI PMID:16801560 NCBI chrNW_004624853:4,415,816...4,503,317
Ensembl chrNW_004624853:4,444,876...4,502,496
JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:7657163) MGI PMID:7657163 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (PMID:18462699) MGI PMID:18462699 NCBI chrNW_004624794:7,985,662...7,989,063
Ensembl chrNW_004624794:7,984,884...7,988,296
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in ISO (PMID:17785448) UniProt PMID:17785448 NCBI chrNW_004624744:19,782,174...19,975,496
Ensembl chrNW_004624744:19,782,790...19,977,335
JBrowse link
G Hoxa11 homeobox A11 involved_in ISO (PMID:17785448) UniProt PMID:17785448 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950
JBrowse link
G Pax2 paired box 2 involved_in ISO (PMID:17785448) UniProt PMID:17785448 NCBI chrNW_004624831:375,851...453,968
Ensembl chrNW_004624831:375,866...453,930
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591
JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (PMID:17785448) UniProt PMID:17785448 NCBI chrNW_004624738:26,442,935...26,447,100
Ensembl chrNW_004624738:26,442,965...26,446,942
JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:13,169,096...13,174,498
Ensembl chrNW_004624782:13,169,719...13,174,056
JBrowse link
mesodermal to mesenchymal transition involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in ISO (PMID:18171685) UniProt PMID:18171685 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321
JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:28839193) UniProt PMID:28839193 NCBI chrNW_004624822:577,840...626,126
Ensembl chrNW_004624822:565,559...624,710
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:25813538) MGI PMID:25813538 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:20040500) MGI PMID:20040500 NCBI chrNW_004624871:4,662,104...4,713,125
Ensembl chrNW_004624871:4,661,669...4,712,960
JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:16054034) MGI PMID:16054034 NCBI chrNW_004624849:2,971,658...2,979,864
Ensembl chrNW_004624849:2,957,153...2,976,179
JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (PMID:17300925) UniProt PMID:17300925 NCBI chrNW_004624831:375,851...453,968
Ensembl chrNW_004624831:375,866...453,930
JBrowse link
G Six1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671
JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (PMID:17314325) UniProt PMID:17314325 NCBI chrNW_004624831:375,851...453,968
Ensembl chrNW_004624831:375,866...453,930
JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624749:13,291,880...13,358,066
Ensembl chrNW_004624749:13,300,606...13,357,903
JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (PMID:21212101) MGI PMID:21212101 NCBI chrNW_004624913:1,759,460...1,764,242
Ensembl chrNW_004624913:1,759,548...1,764,344
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:21212101) MGI PMID:21212101 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596
JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO (PMID:15607945) MGI PMID:15607945 NCBI chrNW_004624732:26,333,642...26,338,450
Ensembl chrNW_004624732:26,333,653...26,337,904
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:17601531) MGI PMID:17601531 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:16651541) MGI PMID:16651541 NCBI chrNW_004624847:1,878,946...1,881,794
Ensembl chrNW_004624847:1,879,007...1,881,669
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008), (PMID:19795512) MGI PMID:11029008 PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606
JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp3 single stranded DNA binding protein 3 involved_in ISO (PMID:15857913) UniProt PMID:15857913 NCBI chrNW_004624934:161,323...313,621
Ensembl chrNW_004624934:161,054...311,937
JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606
JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:16651541) MGI PMID:16651541 NCBI chrNW_004624847:1,878,946...1,881,794
Ensembl chrNW_004624847:1,879,007...1,881,669
JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:11500373) MGI PMID:11500373 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781
JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (PMID:11522634) MGI PMID:11522634 NCBI chrNW_004624818:5,156,428...5,160,858
Ensembl chrNW_004624818:5,153,717...5,161,026
JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) BHF-UCL PMID:21220025 NCBI chrNW_004624747:21,922,249...22,047,246 JBrowse link
middle ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edn1 endothelin 1 acts_upstream_of_or_within ISO (PMID:8152482) MGI PMID:8152482 NCBI chrNW_004624756:13,842,482...13,849,003
Ensembl chrNW_004624756:13,842,164...13,849,029
JBrowse link
G Ednra endothelin receptor type A involved_in ISO (PMID:19185569) MGI PMID:19185569 NCBI chrNW_004624853:6,298,406...6,362,353
Ensembl chrNW_004624853:6,302,751...6,360,089
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:27959908) MGI PMID:27959908 NCBI chrNW_004624753:5,918,005...5,983,480
Ensembl chrNW_004624753:5,917,689...5,982,308
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:10471511) MGI PMID:10471511 NCBI chrNW_004624744:19,782,174...19,975,496
Ensembl chrNW_004624744:19,782,790...19,977,335
JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 acts_upstream_of_or_within ISO (PMID:18219393) MGI PMID:18219393 NCBI chrNW_004624753:7,536,654...7,680,671
Ensembl chrNW_004624753:7,548,694...7,677,472
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (PMID:15630379) MGI PMID:15630379 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17525797) MGI PMID:17525797 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596
JBrowse link
G Gsc goosecoid homeobox involved_in ISO (PMID:14973294) UniProt PMID:14973294 NCBI chrNW_004624734:7,367,030...7,369,081
Ensembl chrNW_004624734:7,367,277...7,368,817
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (PMID:15634706)
(PMID:15861402)
(PMID:16221728)
MGI PMID:15634706 PMID:15861402 PMID:16221728 NCBI chrNW_004624739:3,501,671...3,504,939
Ensembl chrNW_004624739:3,501,817...3,504,750
JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO (PMID:16955138) MGI PMID:16955138 NCBI chrNW_004624800:2,533,010...2,543,754
Ensembl chrNW_004624800:2,534,967...2,543,075
JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within ISO (PMID:16955138) MGI PMID:16955138 NCBI chrNW_004624732:27,089,776...27,110,170
Ensembl chrNW_004624732:27,087,674...27,104,181
JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:16330189) MGI PMID:16330189 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17523175) MGI PMID:17523175 NCBI chrNW_004624735:27,780,338...27,784,714
Ensembl chrNW_004624735:27,780,037...27,784,806
JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:17712420) MGI PMID:17712420 NCBI chrNW_004624795:1,553,582...1,558,110
Ensembl chrNW_004624795:1,553,037...1,558,197
JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO (PMID:14973294) MGI PMID:14973294 NCBI chrNW_004624755:18,070,706...18,073,847
Ensembl chrNW_004624755:18,070,740...18,072,883
JBrowse link
G Nog noggin involved_in ISO (PMID:10080184) BHF-UCL PMID:10080184 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:19389375) UniProt PMID:19389375 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 acts_upstream_of_or_within ISO (PMID:16571658) MGI PMID:16571658 NCBI chrNW_004624844:410,461...424,833
Ensembl chrNW_004624844:410,461...424,809
JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO (PMID:7758948)
(PMID:9729491)
MGI PMID:7758948 PMID:9729491 NCBI chrNW_004624826:8,361,039...8,435,488
Ensembl chrNW_004624826:8,361,033...8,435,656
JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491) MGI PMID:9729491 NCBI chrNW_004624760:5,656,456...5,684,383
Ensembl chrNW_004624760:5,656,521...5,692,934
JBrowse link
G Rpl38 ribosomal protein L38 acts_upstream_of_or_within ISO (PMID:21062742) MGI PMID:21062742 NCBI chrNW_004624801:4,180,507...4,196,514
Ensembl chrNW_004624801:4,180,197...4,198,482
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671
JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15634706) MGI
UniProt
PMID:15634706 GO_REF:0000117 NCBI chrNW_004624738:26,442,935...26,447,100
Ensembl chrNW_004624738:26,442,965...26,446,942
JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:20501333)
(PMID:15652707)
(PMID:16600992)
MGI PMID:15652707 PMID:16600992 PMID:20501333 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098
JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624806:5,389,464...5,463,222
Ensembl chrNW_004624806:5,389,387...5,463,240
JBrowse link
morphogenesis of embryonic epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:15739227) MGI PMID:15739227 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:15843416) MGI PMID:15843416 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 acts_upstream_of_or_within ISO (PMID:15857914) MGI PMID:15857914 NCBI chrNW_004624890:2,146,100...2,165,084
Ensembl chrNW_004624890:2,144,071...2,165,093
JBrowse link
G Jag2 jagged canonical Notch ligand 2 acts_upstream_of_or_within ISO (PMID:16607638) MGI PMID:16607638 NCBI chrNW_004624734:308,371...327,496
Ensembl chrNW_004624734:308,375...327,604
JBrowse link
G Kdf1 keratinocyte differentiation factor 1 involved_in ISO (PMID:24075906) UniProt PMID:24075906 NCBI chrNW_004624764:10,927,426...10,936,771
Ensembl chrNW_004624764:10,927,931...10,936,670
JBrowse link
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO (PMID:16365040) MGI PMID:16365040 NCBI chrNW_004624741:28,156,956...28,217,133
Ensembl chrNW_004624741:28,157,172...28,217,113
JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within ISO (PMID:12591245) MGI PMID:12591245 NCBI chrNW_004624748:14,285,553...14,290,236
Ensembl chrNW_004624748:14,285,475...14,290,166
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within ISO (PMID:8625829) MGI PMID:8625829 NCBI chrNW_004624776:10,591,855...10,596,738
Ensembl chrNW_004624776:10,591,855...10,596,676
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO (PMID:12499390) MGI PMID:12499390 NCBI chrNW_004624735:12,997,358...13,018,765
Ensembl chrNW_004624735:12,997,408...13,018,533
JBrowse link
G Tbx18 T-box transcription factor 18 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16511601) TreeGrafter
MGI
PMID:16511601 GO_REF:0000118 NCBI chrNW_004624799:9,694,167...9,721,468
Ensembl chrNW_004624799:9,694,374...9,719,385
JBrowse link
G Tgfb1i1 transforming growth factor beta 1 induced transcript 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:14,471,427...14,476,792
Ensembl chrNW_004624782:14,471,415...14,476,914
JBrowse link
G Vegfc vascular endothelial growth factor C acts_upstream_of_or_within ISO (PMID:14634646) MGI PMID:14634646 NCBI chrNW_004624769:7,689,812...7,817,366
Ensembl chrNW_004624769:7,689,407...7,817,450
JBrowse link
myotome development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of ISO (PMID:16387292) MGI PMID:16387292 NCBI chrNW_004624736:5,721,984...5,730,558
Ensembl chrNW_004624736:5,722,404...5,730,633
JBrowse link
G Six1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671
JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (PMID:15788460), (PMID:19962975) UniProt PMID:15788460 PMID:19962975 NCBI chrNW_004624734:40,397,276...40,409,951
Ensembl chrNW_004624734:40,397,559...40,409,997
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997
JBrowse link
negative regulation of cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elf5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO (PMID:24859262) MGI PMID:24859262 NCBI chrNW_004624767:12,648,420...12,675,727
Ensembl chrNW_004624767:12,649,643...12,675,711
JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO (PMID:9676199) MGI PMID:9676199 NCBI chrNW_004624790:5,509,541...5,515,240
Ensembl chrNW_004624790:5,509,311...5,515,266
JBrowse link
negative regulation of dermatome development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp2 secreted frizzled related protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591
JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd7 frizzled class receptor 7 involved_in ISO (PMID:18681827) BHF-UCL PMID:18681827 NCBI chrNW_004624765:14,399,143...14,402,970 JBrowse link
negative regulation of embryonic development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rps6ka6 ribosomal protein S6 kinase A6 involved_in ISO (PMID:15121846) UniProt PMID:15121846 NCBI chrNW_004624852:4,287,104...4,492,128
Ensembl chrNW_004624852:4,287,855...4,482,373
JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004624760:2,593,923...2,713,772
Ensembl chrNW_004624760:2,593,961...2,713,772
JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624899:1,035,797...1,175,394
Ensembl chrNW_004624899:1,035,964...1,174,844
JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624775:2,985,077...3,014,567
Ensembl chrNW_004624775:2,994,164...3,015,392
JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624775:2,985,077...3,014,567
Ensembl chrNW_004624775:2,994,164...3,015,392
JBrowse link
negative regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx2 T-box transcription factor 2 involved_in ISO (PMID:15042700) BHF-UCL PMID:15042700 NCBI chrNW_004624871:2,428,757...2,437,447
Ensembl chrNW_004624871:2,429,407...2,437,447
JBrowse link
negative regulation of heterotypic cell-cell adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:69,941,963...69,959,266
Ensembl chrNW_004624730:69,941,001...69,957,012
JBrowse link
G Apoa1 apolipoprotein A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:12,249,283...12,251,215
Ensembl chrNW_004624784:12,249,283...12,251,136
JBrowse link
G Il10 interleukin 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624807:4,687,249...4,691,658
Ensembl chrNW_004624807:4,687,176...4,691,732
JBrowse link
G Il1rn interleukin 1 receptor antagonist involved_in ISO (PMID:2139180) BHF-UCL PMID:2139180 NCBI chrNW_004624749:13,210,365...13,224,471
Ensembl chrNW_004624749:13,210,476...13,225,890
JBrowse link
G Klf4 KLF transcription factor 4 involved_in ISO (PMID:20551324) BHF-UCL PMID:20551324 NCBI chrNW_004624758:4,047,217...4,052,257
Ensembl chrNW_004624758:4,047,219...4,051,983
JBrowse link
G Map2k5 mitogen-activated protein kinase kinase 5 involved_in ISO PMID:20551324 BHF-UCL PMID:20551324 RGD:8553940 NCBI chrNW_004624781:5,224,722...5,489,517
Ensembl chrNW_004624781:5,224,724...5,489,488
JBrowse link
G Mapk7 mitogen-activated protein kinase 7 involved_in ISO (PMID:20551324) BHF-UCL PMID:20551324 NCBI chrNW_004624849:5,655,631...5,661,779
Ensembl chrNW_004624849:5,656,515...5,664,721
JBrowse link
G Mbp myelin basic protein involved_in ISO (PMID:22524708) CAFA PMID:22524708 NCBI chrNW_004624806:3,465,881...3,587,428
Ensembl chrNW_004624806:3,489,681...3,588,335
JBrowse link
G Myadm myeloid associated differentiation marker involved_in ISO (PMID:23264465) UniProt PMID:23264465 NCBI chrNW_004624832:2,568,128...2,574,248
Ensembl chrNW_004624832:2,568,128...2,573,544
JBrowse link
G Wnk1 WNK lysine deficient protein kinase 1 involved_in ISO (PMID:27400149) BHF-UCL PMID:27400149 NCBI chrNW_004624735:8,987,390...9,122,277
Ensembl chrNW_004624735:8,987,469...9,124,516
JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591
JBrowse link
negative regulation of mitotic cell cycle, embryonic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Fzd3 frizzled class receptor 3 involved_in ISO (PMID:21325504) UniProt PMID:21325504 NCBI chrNW_004624758:23,147,512...23,240,711
Ensembl chrNW_004624758:23,147,452...23,230,879
JBrowse link
negative regulation of neural crest formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fuz fuzzy planar cell polarity protein involved_in ISO (PMID:23806618) UniProt PMID:23806618 NCBI chrNW_004624832:4,509,118...4,514,180
Ensembl chrNW_004624832:4,509,505...4,514,183
JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISO (PMID:23072809) UniProt PMID:23072809 NCBI chrNW_004624740:30,392,342...30,404,003
Ensembl chrNW_004624740:30,392,079...30,404,068
JBrowse link
negative regulation of odontoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msx1 msh homeobox 1 involved_in ISO (PMID:24028588), (PMID:29148101) UniProt PMID:24028588 PMID:29148101 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337
JBrowse link
negative regulation of prostatic bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:18393306)
(PMID:11401393)
MGI PMID:11401393 PMID:18393306 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:16324690) MGI PMID:16324690 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742
JBrowse link
G Sulf1 sulfatase 1 involved_in ISO (PMID:20410206) UniProt PMID:20410206 NCBI chrNW_004624744:21,484,934...21,685,476
Ensembl chrNW_004624744:21,484,834...21,685,577
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:18804104) MGI PMID:18804104 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr161 G protein-coupled receptor 161 involved_in ISO (PMID:23332756) UniProt PMID:23332756 NCBI chrNW_004624826:6,089,127...6,135,076
Ensembl chrNW_004624826:6,089,127...6,134,127
JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:18173746) MGI PMID:18173746 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781
JBrowse link
G Nkx6-3 NK6 homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:1,619,191...1,626,080
Ensembl chrNW_004624780:1,621,746...1,626,041
JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within ISO (PMID:11948913) MGI PMID:11948913 NCBI chrNW_004624823:6,145,836...6,150,133
Ensembl chrNW_004624823:6,145,545...6,150,181
JBrowse link
neural crest cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edn1 endothelin 1 involved_in ISO (PMID:23933587) MGI PMID:23933587 NCBI chrNW_004624756:13,842,482...13,849,003
Ensembl chrNW_004624756:13,842,164...13,849,029
JBrowse link
G Ednra endothelin receptor type A involved_in ISO (PMID:23933587)
(PMID:17294360)
MGI PMID:17294360 PMID:23933587 NCBI chrNW_004624853:6,298,406...6,362,353
Ensembl chrNW_004624853:6,302,751...6,360,089
JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:20130188) MGI PMID:20130188 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508
JBrowse link
neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsc goosecoid homeobox involved_in ISO (PMID:24290375) UniProt PMID:24290375 NCBI chrNW_004624734:7,367,030...7,369,081
Ensembl chrNW_004624734:7,367,277...7,368,817
JBrowse link
neural crest formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:17685487) MGI PMID:17685487 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843
JBrowse link
G Kbtbd8 kelch repeat and BTB domain containing 8 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624773:1,376,745...1,390,396
Ensembl chrNW_004624773:1,376,628...1,389,906
JBrowse link
G Klhl12 kelch like family member 12 involved_in ISO (PMID:27716508) UniProt PMID:27716508 NCBI chrNW_004624807:7,919,216...7,948,254
Ensembl chrNW_004624807:7,919,700...7,948,217
JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Nolc1 nucleolar and coiled-body phosphoprotein 1 involved_in ISO (PMID:26399832) UniProt PMID:26399832 NCBI chrNW_004624831:1,613,318...1,620,592
Ensembl chrNW_004624831:1,613,234...1,620,792
JBrowse link
G Pdcd6 programmed cell death 6 involved_in ISO (PMID:27716508) UniProt PMID:27716508 NCBI chrNW_004624751:99,835...120,963
Ensembl chrNW_004624751:99,860...120,963
JBrowse link
G Pef1 penta-EF-hand domain containing 1 involved_in ISO (PMID:27716508) UniProt PMID:27716508 NCBI chrNW_004624764:14,872,646...14,889,307
Ensembl chrNW_004624764:14,873,415...14,889,139
JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 involved_in ISO (PMID:26399832) UniProt PMID:26399832 NCBI chrNW_004624774:9,660,272...9,699,708 JBrowse link
neural fold bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Luzp1 leucine zipper protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:18801334) MGI
TreeGrafter
PMID:18801334 GO_REF:0000118 NCBI chrNW_004624764:7,742,703...7,833,792
Ensembl chrNW_004624764:7,746,619...7,773,728
JBrowse link
neural fold elevation formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624850:3,324,553...3,481,439
Ensembl chrNW_004624850:3,322,782...3,481,512
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (PMID:10079236) BHF-UCL PMID:10079236 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:10328919) MGI PMID:10328919 NCBI chrNW_004624734:39,414,458...39,471,705
Ensembl chrNW_004624734:39,411,824...39,471,705
JBrowse link
neural fold formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfl1 cofilin 1 acts_upstream_of_or_within ISO (PMID:15649475) MGI PMID:15649475 NCBI chrNW_004624767:20,574,884...20,578,413
Ensembl chrNW_004624767:20,574,966...20,579,796
JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chrNW_004624908:2,213,661...2,305,877
Ensembl chrNW_004624908:2,230,581...2,308,579
JBrowse link
G LOC101714324 cat eye syndrome critical region protein 2 acts_upstream_of_or_within ISO (PMID:21246654) MGI PMID:21246654 NCBI chrNW_004624735:9,749,105...9,896,328
Ensembl chrNW_004624735:9,747,550...9,896,370
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (PMID:16423343) MGI PMID:16423343 NCBI chrNW_004624741:18,994,689...19,012,381
Ensembl chrNW_004624741:18,995,246...19,012,910
JBrowse link
neural plate axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004624817:2,880,775...3,060,399
Ensembl chrNW_004624817:2,880,976...3,042,004
JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389
JBrowse link
neural plate development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Zic2 Zic family member 2 involved_in ISO (PMID:17490632) MGI PMID:17490632 NCBI chrNW_004624793:11,162,835...11,167,497
Ensembl chrNW_004624793:11,163,916...11,167,457
JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:17490632) MGI PMID:17490632 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093
JBrowse link
neural plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htt huntingtin acts_upstream_of_or_within ISO (PMID:7774020) MGI PMID:7774020 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333
JBrowse link
neural plate morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16613831) MGI PMID:16613831 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741
JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:16712836) MGI PMID:16712836 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (PMID:15384171) MGI PMID:15384171 NCBI chrNW_004624785:13,058,520...13,066,607
Ensembl chrNW_004624785:13,058,444...13,066,719
JBrowse link
neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9883720) MGI
UniProt
PMID:9883720 GO_REF:0000117 NCBI chrNW_004624760:4,878,811...5,032,719
Ensembl chrNW_004624760:4,878,556...5,031,491
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9883720) MGI
UniProt
PMID:9883720 GO_REF:0000117 NCBI chrNW_004624771:3,160,528...3,280,860
Ensembl chrNW_004624771:3,160,224...3,278,787
JBrowse link
G Adm adrenomedullin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:2,402,152...2,404,343
Ensembl chrNW_004624766:2,401,769...2,404,446
JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within ISO (PMID:11504943), (PMID:9216040) MGI PMID:9216040 PMID:11504943 NCBI chrNW_004624750:8,835,521...8,940,957
Ensembl chrNW_004624750:8,837,037...8,938,009
JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within ISO (PMID:11044403) MGI PMID:11044403 NCBI chrNW_004624832:6,650,383...6,773,828
Ensembl chrNW_004624832:6,650,383...6,719,786
JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO (PMID:23129809) MGI PMID:23129809 NCBI chrNW_004624764:10,672,673...10,759,634
Ensembl chrNW_004624764:10,672,735...10,759,634
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (PMID:16170314) MGI PMID:16170314 NCBI chrNW_004624781:1,502,069...1,553,101
Ensembl chrNW_004624781:1,503,816...1,538,755
JBrowse link
G Bcl10 BCL10 immune signaling adaptor involved_in ISO (PMID:11163238) UniProt PMID:11163238 NCBI chrNW_004624742:12,210,333...12,222,533
Ensembl chrNW_004624742:12,210,360...12,221,759
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:19850029) MGI PMID:19850029 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Brd2 bromodomain containing 2 acts_upstream_of_or_within ISO (PMID:19362612) MGI PMID:19362612 NCBI chrNW_004624754:23,742,506...23,750,668
Ensembl chrNW_004624754:23,742,509...23,750,062
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO (PMID:24947469) MGI PMID:24947469 NCBI chrNW_004624755:16,252,488...16,361,794
Ensembl chrNW_004624755:16,252,582...16,355,053
JBrowse link
G Cdk20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (PMID:28817564) MGI PMID:28817564 NCBI chrNW_004624868:4,225,779...4,248,252
Ensembl chrNW_004624868:4,241,976...4,248,196
JBrowse link
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within
ISO (PMID:12842012)
(PMID:17229766)
UniProt
MGI
PMID:12842012 PMID:17229766 NCBI chrNW_004624752:3,426,317...3,537,219
Ensembl chrNW_004624752:3,425,901...3,535,400
JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:12149478) MGI PMID:12149478 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536
JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO (PMID:23742838) MGI PMID:23742838 NCBI chrNW_004624824:1,299,426...1,352,019
Ensembl chrNW_004624824:1,300,137...1,351,129
JBrowse link
G Cobl cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (PMID:14512015) MGI PMID:14512015 NCBI chrNW_004624740:3,332,977...3,399,915 JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISO (PMID:14966286) UniProt PMID:14966286 NCBI chrNW_004624766:21,799,282...21,832,267
Ensembl chrNW_004624766:21,799,119...21,833,631
JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO (PMID:15710412) MGI PMID:15710412 NCBI chrNW_004624839:3,495,580...3,899,009
Ensembl chrNW_004624839:3,509,441...3,899,162
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO (PMID:12421720) MGI PMID:12421720 NCBI chrNW_004624786:9,843,580...9,851,538
Ensembl chrNW_004624786:9,844,157...9,851,301
JBrowse link
G Enah ENAH actin regulator acts_upstream_of_or_within ISO (PMID:10069337)
(PMID:15371503)
MGI PMID:10069337 PMID:15371503 NCBI chrNW_004624835:6,292,808...6,442,349 JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in
acts_upstream_of_or_within
ISO (PMID:19767740), (PMID:21840926)
(PMID:19877275)
(PMID:21840926)
UniProt
MGI
PMID:19767740 PMID:19877275 PMID:21840926 NCBI chrNW_004624832:4,509,118...4,514,180
Ensembl chrNW_004624832:4,509,505...4,514,183
JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within ISO (PMID:16495441) MGI PMID:16495441 NCBI chrNW_004624758:23,147,512...23,240,711
Ensembl chrNW_004624758:23,147,452...23,230,879
JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO (PMID:16495441) MGI PMID:16495441 NCBI chrNW_004624763:19,861,837...19,888,626 JBrowse link
G Glmn glomulin, FKBP associated protein acts_upstream_of_or_within ISO (PMID:22405651) MGI PMID:22405651 NCBI chrNW_004624742:5,434,588...5,477,647 JBrowse link
G Grhl2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within
ISO (PMID:20654612), (PMID:20978075)
(PMID:21262862)
UniProt
MGI
PMID:20654612 PMID:20978075 PMID:21262862 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358
JBrowse link
G Grhl3 grainyhead like transcription factor 3 involved_in ISO (PMID:16949565), (PMID:20654612) UniProt PMID:16949565 PMID:20654612 NCBI chrNW_004624764:8,753,343...8,783,891
Ensembl chrNW_004624764:8,753,567...8,783,162
JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in
ISO (PMID:15755804), (PMID:9636176)
(PMID:17442300)
MGI
UniProt
PMID:9636176 PMID:15755804 PMID:17442300 NCBI chrNW_004624820:1,097,323...1,196,556
Ensembl chrNW_004624820:1,097,463...1,196,499
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:19000668) UniProt PMID:19000668 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:18930042) MGI PMID:18930042 NCBI chrNW_004624738:9,510,452...9,546,985
Ensembl chrNW_004624738:9,510,512...9,545,933
JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO (PMID:17027958) MGI PMID:17027958 NCBI chrNW_004624731:41,321,574...41,390,133
Ensembl chrNW_004624731:41,322,033...41,388,570
JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO (PMID:17325035) MGI PMID:17325035 NCBI chrNW_004624795:1,782,367...1,787,408
Ensembl chrNW_004624795:1,782,366...1,788,951
JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) MGI PMID:25463925 NCBI chrNW_004624767:19,247,009...19,365,520
Ensembl chrNW_004624767:19,248,430...19,364,793
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (PMID:22949634) MGI PMID:22949634 NCBI chrNW_004624887:1,065,173...1,279,660
Ensembl chrNW_004624887:1,065,883...1,279,186
JBrowse link
G Kif20b kinesin family member 20B acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624737:616,766...687,132
Ensembl chrNW_004624737:616,869...687,050
JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:11719201) MGI PMID:11719201 NCBI chrNW_004624760:10,951,837...10,982,592 JBrowse link
G Lias lipoic acid synthetase acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624870:4,809,154...4,825,676 JBrowse link
G Lmo4 LIM domain only 4 involved_in
acts_upstream_of_or_within
ISO (PMID:16949565)
(PMID:15691703)
(PMID:14966285)
UniProt
MGI
PMID:14966285 PMID:15691703 PMID:16949565 NCBI chrNW_004624742:10,207,901...10,224,807
Ensembl chrNW_004624742:10,207,899...10,225,209
JBrowse link
G LOC101714324 cat eye syndrome critical region protein 2 acts_upstream_of_or_within ISO (PMID:21246654)
(PMID:20589882)
(PMID:15640247)
MGI PMID:15640247 PMID:20589882 PMID:21246654 NCBI chrNW_004624735:9,749,105...9,896,328
Ensembl chrNW_004624735:9,747,550...9,896,370
JBrowse link
G LOC101723938 ALX homeobox protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624837:4,222,679...4,473,532
Ensembl chrNW_004624837:4,234,677...4,414,783
Ensembl chrNW_004624837:4,234,677...4,414,783
JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISO (PMID:24639464) UniProt PMID:24639464 NCBI chrNW_004624787:6,797,462...6,998,859
Ensembl chrNW_004624787:6,798,938...6,998,697
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512)
(PMID:19056682)
(PMID:15469977)
(PMID:19653321)
(PMID:10545599)
MGI PMID:10545599 PMID:15469977 PMID:19056682 PMID:19653321 PMID:19795512 MGI:61254 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20630950) MGI PMID:20630950 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474
JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:23454480)
(PMID:19776033)
MGI PMID:19776033 PMID:23454480 NCBI chrNW_004624871:50,688...63,772
Ensembl chrNW_004624871:51,122...63,742
JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624734:36,560,486...36,620,043
Ensembl chrNW_004624734:36,560,486...36,620,026
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624785:7,129,969...7,328,331
Ensembl chrNW_004624785:7,129,859...7,328,153
JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624818:1,184,736...1,202,708
Ensembl chrNW_004624818:1,187,869...1,199,168
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538
JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:16712836) MGI PMID:16712836 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Opa1 OPA1 mitochondrial dynamin like GTPase acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624730:63,911,066...63,994,886
Ensembl chrNW_004624730:63,911,066...63,995,596
JBrowse link
G Pax2 paired box 2 involved_in ISO (PMID:8951055) DFLAT PMID:8951055 NCBI chrNW_004624831:375,851...453,968
Ensembl chrNW_004624831:375,866...453,930
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO (PMID:15384171) MGI PMID:15384171 NCBI chrNW_004624823:2,870,762...2,963,134
Ensembl chrNW_004624823:2,871,162...2,961,944
JBrowse link
G Pfn1 profilin 1 acts_upstream_of_or_within ISO (PMID:10069337) MGI PMID:10069337 NCBI chrNW_004624786:8,803,247...8,805,958
Ensembl chrNW_004624786:8,803,118...8,805,960
JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624764:12,203,854...12,306,879
Ensembl chrNW_004624764:12,203,622...12,306,974
JBrowse link
G Plxnb2 plexin B2 involved_in ISO (PMID:17554007) UniProt PMID:17554007 NCBI chrNW_004624752:473,451...498,555
Ensembl chrNW_004624752:469,973...498,729
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO (PMID:22007132) MGI PMID:22007132 NCBI chrNW_004624901:1,319,426...1,336,848
Ensembl chrNW_004624901:1,319,062...1,336,744
JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within ISO (PMID:22007132) MGI PMID:22007132 NCBI chrNW_004624742:13,243,248...13,357,873
Ensembl chrNW_004624742:13,242,593...13,357,986
JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:9262482) MGI PMID:9262482 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389
JBrowse link
G Ptk7 protein tyrosine kinase 7 (inactive) acts_upstream_of_or_within ISO (PMID:15229603)
(PMID:20704721)
MGI PMID:15229603 PMID:20704721 NCBI chrNW_004624754:16,386,437...16,441,341
Ensembl chrNW_004624754:16,386,296...16,440,681
JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in
acts_upstream_of_or_within
ISO (PMID:7720556)
(PMID:9636176)
UniProt
MGI
PMID:7720556 PMID:9636176 NCBI chrNW_004624753:18,988,842...19,014,799 JBrowse link
G Rala RAS like proto-oncogene A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624740:21,281,678...21,347,109
Ensembl chrNW_004624740:21,281,602...21,346,928
JBrowse link
G Rara retinoic acid receptor alpha acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chrNW_004624795:2,935,432...2,975,226
Ensembl chrNW_004624795:2,934,731...2,967,232
JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chrNW_004624904:1,255,854...1,277,946 JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a acts_upstream_of_or_within ISO (PMID:14749425) MGI PMID:14749425 NCBI chrNW_004624768:10,739,674...10,778,036
Ensembl chrNW_004624768:10,751,991...10,778,050
JBrowse link
G Rock2 Rho associated coiled-coil containing protein kinase 2 acts_upstream_of_or_within ISO (PMID:17229766) MGI PMID:17229766 NCBI chrNW_004624865:4,461,200...4,591,309
Ensembl chrNW_004624865:4,461,215...4,588,836
JBrowse link
G Rps7 ribosomal protein S7 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624846:5,185,236...5,190,357
Ensembl chrNW_004624846:5,185,236...5,190,260
JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:16790473) MGI PMID:16790473 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617
JBrowse link
G Sall4 spalt like transcription factor 4 acts_upstream_of_or_within ISO (PMID:16790473) MGI PMID:16790473 NCBI chrNW_004624790:4,153,157...4,170,813
Ensembl chrNW_004624790:4,162,454...4,170,923
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21515572)
(PMID:20643356)
MGI
UniProt
PMID:20643356 PMID:21515572 GO_REF:0000117 NCBI chrNW_004624735:12,997,358...13,018,765
Ensembl chrNW_004624735:12,997,408...13,018,533
JBrowse link
G Sdc4 syndecan 4 acts_upstream_of_or_within ISO (PMID:23760952) MGI PMID:23760952 NCBI chrNW_004624790:9,146,371...9,166,729
Ensembl chrNW_004624790:9,145,745...9,169,526
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (PMID:20215345)
(PMID:19966784)
MGI PMID:19966784 PMID:20215345 NCBI chrNW_004624830:268,764...334,660 JBrowse link
G Sema4c semaphorin 4C involved_in ISO (PMID:21122816) UniProt PMID:21122816 NCBI chrNW_004624749:2,737,251...2,747,540
Ensembl chrNW_004624749:2,737,251...2,745,979
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:20133625) MGI PMID:20133625 NCBI chrNW_004624730:74,187,981...74,277,857
Ensembl chrNW_004624730:74,187,995...74,277,200
JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:19850029) MGI PMID:19850029 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591
JBrowse link
G Shroom3 shroom family member 3 acts_upstream_of_or_within ISO (PMID:16249236) MGI PMID:16249236 NCBI chrNW_004624757:14,187,911...14,524,999
Ensembl chrNW_004624757:14,187,756...14,394,834
JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:9284043) MGI PMID:9284043 NCBI chrNW_004624818:7,674,184...7,736,249
Ensembl chrNW_004624818:7,673,203...7,736,255
JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within ISO (PMID:19592578) MGI PMID:19592578 NCBI chrNW_004624804:8,092,700...8,105,478
Ensembl chrNW_004624804:8,093,346...8,106,193
JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type 2 acts_upstream_of_or_within ISO (PMID:19592578) MGI PMID:19592578 NCBI chrNW_004624794:11,738,137...11,765,579
Ensembl chrNW_004624794:11,738,487...11,769,117
JBrowse link
G St14 ST14 transmembrane serine protease matriptase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624812:4,584,043...4,620,410
Ensembl chrNW_004624812:4,583,946...4,620,547
JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004624859:5,510,442...5,572,122
Ensembl chrNW_004624859:5,510,384...5,572,228
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:16155214) MGI PMID:16155214 NCBI chrNW_004624831:1,882,114...2,012,341
Ensembl chrNW_004624831:1,882,077...2,012,341
JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (PMID:16835439) MGI PMID:16835439 NCBI chrNW_004624785:13,058,520...13,066,607
Ensembl chrNW_004624785:13,058,444...13,066,719
JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (PMID:17868131) MGI PMID:17868131 NCBI chrNW_004624832:4,821,697...4,837,257 JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:8622766), (PMID:9811866) MGI PMID:8622766 PMID:9811866 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379
JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:7600998) BHF-UCL PMID:7600998 NCBI chrNW_004624907:162,567...175,696
Ensembl chrNW_004624907:161,569...176,605
JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643
JBrowse link
G Tgif1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:17082251) MGI PMID:17082251 NCBI chrNW_004624770:13,506,501...13,515,388
Ensembl chrNW_004624770:13,508,409...13,516,457
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955
JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:10,729,766...10,803,253
Ensembl chrNW_004624767:10,729,413...10,748,455
JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within ISO (PMID:19098426) MGI PMID:19098426 NCBI chrNW_004624788:10,858,490...10,929,693
Ensembl chrNW_004624788:10,859,932...10,929,029
JBrowse link
G Tsc1 TSC complex subunit 1 acts_upstream_of_or_within ISO (PMID:11438694) MGI PMID:11438694 NCBI chrNW_004624760:3,479,028...3,536,612
Ensembl chrNW_004624760:3,498,692...3,532,011
JBrowse link
G Tsc2 TSC complex subunit 2 acts_upstream_of_or_within ISO (PMID:10096549) MGI PMID:10096549 NCBI chrNW_004624913:166,931...203,008
Ensembl chrNW_004624913:166,931...202,953
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19223390) MGI PMID:19223390 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:7729687) MGI PMID:7729687 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624794:841,302...867,717
Ensembl chrNW_004624794:841,247...867,708
JBrowse link
G Vasp vasodilator stimulated phosphoprotein acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15371503) MGI
TreeGrafter
PMID:15371503 GO_REF:0000118 NCBI chrNW_004624832:7,619,211...7,631,576
Ensembl chrNW_004624832:7,619,134...7,630,943
JBrowse link
G Wdr83 WD repeat domain 83 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624901:310,709...315,302
Ensembl chrNW_004624901:310,709...315,054
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512)
(PMID:17433286)
MGI PMID:17433286 PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:16598713) MGI PMID:16598713 NCBI chrNW_004624732:44,097,348...44,226,701
Ensembl chrNW_004624732:44,101,613...44,139,997
JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO (PMID:15384171) MGI PMID:15384171 NCBI chrNW_004624793:11,162,835...11,167,497
Ensembl chrNW_004624793:11,163,916...11,167,457
JBrowse link
G Zic5 Zic family member 5 acts_upstream_of_or_within ISO (PMID:15136147) MGI PMID:15136147 NCBI chrNW_004624793:11,171,431...11,186,415
Ensembl chrNW_004624793:11,176,946...11,189,003
JBrowse link
neural tube development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 involved_in ISO (PMID:16237707) UniProt PMID:16237707 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479
JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 acts_upstream_of_or_within ISO (PMID:17589504) MGI PMID:17589504 NCBI chrNW_004624767:1,967,002...2,160,102
Ensembl chrNW_004624767:1,966,898...2,160,465
JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004624817:2,880,775...3,060,399
Ensembl chrNW_004624817:2,880,976...3,042,004
JBrowse link
G Dact1 dishevelled binding antagonist of beta catenin 1 involved_in ISO (PMID:22610794) ParkinsonsUK-UCL PMID:22610794 NCBI chrNW_004624884:3,733,648...3,750,207
Ensembl chrNW_004624884:3,739,334...3,948,621
JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within ISO (PMID:21303848) MGI PMID:21303848 NCBI chrNW_004624817:8,111,714...8,147,699
Ensembl chrNW_004624817:8,111,718...8,134,342
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO (PMID:8817329) BHF-UCL PMID:8817329 NCBI chrNW_004624818:8,267,111...8,283,755
Ensembl chrNW_004624818:8,267,128...8,278,725
JBrowse link
G Epha2 EPH receptor A2 acts_upstream_of_or_within ISO (PMID:11287184) MGI PMID:11287184 NCBI chrNW_004624764:2,265,114...2,296,032
Ensembl chrNW_004624764:2,264,945...2,296,197
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004624908:1,713,590...1,720,709 JBrowse link
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO (PMID:10693795) MGI PMID:10693795 NCBI chrNW_004624738:3,281,828...3,286,627 JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:19056373) MGI PMID:19056373 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:8387379) MGI PMID:8387379 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21377456) MGI
TreeGrafter
PMID:21377456 GO_REF:0000118 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358
JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:11500373)
(PMID:10804175)
MGI PMID:10804175 PMID:11500373 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781
JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (PMID:11500373) MGI PMID:11500373 NCBI chrNW_004624818:5,156,428...5,160,858
Ensembl chrNW_004624818:5,153,717...5,161,026
JBrowse link
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within ISO (PMID:10804175) MGI PMID:10804175 NCBI chrNW_004624818:7,516,279...7,517,654
Ensembl chrNW_004624818:7,516,189...7,518,734
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:19521792) MGI PMID:19521792 NCBI chrNW_004624738:9,510,452...9,546,985
Ensembl chrNW_004624738:9,510,512...9,545,933
JBrowse link
G Inka1 inka box actin regulator 1 acts_upstream_of_or_within ISO (PMID:20175189) MGI PMID:20175189 NCBI chrNW_004624730:3,717,980...3,720,343
Ensembl chrNW_004624730:3,718,573...3,721,001
JBrowse link
G Intu inturned planar cell polarity protein acts_upstream_of_or_within ISO (PMID:25774014) MGI PMID:25774014 NCBI chrNW_004624777:8,585,777...8,674,887
Ensembl chrNW_004624777:8,596,178...8,675,295
JBrowse link
G Itpk1 inositol-tetrakisphosphate 1-kinase acts_upstream_of_or_within ISO (PMID:19482943) MGI PMID:19482943 NCBI chrNW_004624734:9,420,232...9,568,655
Ensembl chrNW_004624734:9,417,939...9,568,702
JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISO (PMID:30655546) MGI PMID:30655546 NCBI chrNW_004624767:20,668,759...20,675,367
Ensembl chrNW_004624767:20,666,763...20,675,164
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (PMID:23028370) MGI PMID:23028370 NCBI chrNW_004624887:1,065,173...1,279,660
Ensembl chrNW_004624887:1,065,883...1,279,186
JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within ISO (PMID:10330409) MGI PMID:10330409 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121
JBrowse link
G LOC101714324 cat eye syndrome critical region protein 2 acts_upstream_of_or_within ISO (PMID:22045912) MGI PMID:22045912 NCBI chrNW_004624735:9,749,105...9,896,328
Ensembl chrNW_004624735:9,747,550...9,896,370
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate involved_in ISO (PMID:30655546) MGI PMID:30655546 NCBI chrNW_004624856:4,966,545...4,970,226
Ensembl chrNW_004624856:4,967,732...4,969,754
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20589884) MGI PMID:20589884 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474
JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:10419687) MGI PMID:10419687 NCBI chrNW_004624875:3,636,762...3,959,991
Ensembl chrNW_004624875:3,636,924...3,956,576
JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:9585504) MGI PMID:9585504 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:7789282) MGI PMID:7789282 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531
JBrowse link
G Nup133 nucleoporin 133 acts_upstream_of_or_within ISO (PMID:18539113) MGI PMID:18539113 NCBI chrNW_004624775:19,589,496...19,647,823
Ensembl chrNW_004624775:19,589,372...19,648,884
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10419687) MGI
UniProt
PMID:10419687 GO_REF:0000117 NCBI chrNW_004624823:2,870,762...2,963,134
Ensembl chrNW_004624823:2,871,162...2,961,944
JBrowse link
G Pax7 paired box 7 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624764:3,853,055...3,951,182
Ensembl chrNW_004624764:3,853,055...3,947,521
JBrowse link
G Phgdh phosphoglycerate dehydrogenase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624772:15,473,609...15,514,392
Ensembl chrNW_004624772:15,473,221...15,514,637
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004624913:118,520...166,939
Ensembl chrNW_004624913:118,733...165,859
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004624872:4,539,965...4,592,004
Ensembl chrNW_004624872:4,539,847...4,594,793
JBrowse link
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO (PMID:16467571) MGI PMID:16467571 NCBI chrNW_004624740:16,074,027...16,082,139
Ensembl chrNW_004624740:16,074,141...16,082,223
JBrowse link
G Plxna2 plexin A2 involved_in ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004624807:3,643,283...3,829,817
Ensembl chrNW_004624807:3,643,255...3,834,128
JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:18818376) MGI PMID:18818376 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617
JBrowse link
G Sall2 spalt like transcription factor 2 acts_upstream_of_or_within ISO (PMID:18818376) MGI PMID:18818376 NCBI chrNW_004624825:7,536,350...7,551,168
Ensembl chrNW_004624825:7,535,781...7,551,255
JBrowse link
G Sall4 spalt like transcription factor 4 acts_upstream_of_or_within ISO (PMID:18818376) MGI PMID:18818376 NCBI chrNW_004624790:4,153,157...4,170,813
Ensembl chrNW_004624790:4,162,454...4,170,923
JBrowse link
G Sema3c semaphorin 3C involved_in ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004624739:29,484,557...29,642,981
Ensembl chrNW_004624739:29,484,461...29,626,619
JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:19850029) MGI PMID:19850029 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591
JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004624859:5,510,442...5,572,122
Ensembl chrNW_004624859:5,510,384...5,572,228
JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004624798:9,444,536...9,609,957
Ensembl chrNW_004624798:9,444,919...9,609,134
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624733:38,076,800...38,104,265
Ensembl chrNW_004624733:38,076,410...38,104,173
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624737:33,341,574...33,526,814
Ensembl chrNW_004624737:33,341,029...33,526,928
JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:7600998) BHF-UCL PMID:7600998 NCBI chrNW_004624907:162,567...175,696
Ensembl chrNW_004624907:161,569...176,605
JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO (PMID:22508726) UniProt PMID:22508726 NCBI chrNW_004624788:10,858,490...10,929,693
Ensembl chrNW_004624788:10,859,932...10,929,029
JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (PMID:23141541) MGI PMID:23141541 NCBI chrNW_004624804:9,841,401...10,002,592
Ensembl chrNW_004624804:9,848,512...10,002,693
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:32,251,100...32,256,458
Ensembl chrNW_004624734:32,251,114...32,257,211
JBrowse link
neural tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brpf1 bromodomain and PHD finger containing 1 acts_upstream_of_or_within ISO (PMID:27528195) MGI PMID:27528195 NCBI chrNW_004624731:4,364,870...4,381,581
Ensembl chrNW_004624731:4,364,565...4,383,157
JBrowse link
G Casp8 caspase 8 acts_upstream_of_or_within ISO (PMID:12404118) MGI PMID:12404118 NCBI chrNW_004624899:427,064...450,931
Ensembl chrNW_004624899:424,363...451,087
JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:11694877) MGI PMID:11694877 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536
JBrowse link
G Coq7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO (PMID:11716496) MGI PMID:11716496 NCBI chrNW_004624782:2,682,489...2,689,662
Ensembl chrNW_004624782:2,682,486...2,689,661
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:14603322) MGI PMID:14603322 NCBI chrNW_004624738:9,510,452...9,546,985
Ensembl chrNW_004624738:9,510,512...9,545,933
JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (PMID:15930098) MGI PMID:15930098 NCBI chrNW_004624790:10,674,002...10,726,292
Ensembl chrNW_004624790:10,678,911...10,726,265
JBrowse link
G Ipmk inositol polyphosphate multikinase acts_upstream_of_or_within ISO (PMID:15939867) MGI PMID:15939867 NCBI chrNW_004624791:5,325,413...5,387,912 JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 acts_upstream_of_or_within ISO (PMID:16260493) MGI PMID:16260493 NCBI chrNW_004624799:3,554,644...3,623,317
Ensembl chrNW_004624799:3,554,678...3,622,289
JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:16000382) MGI PMID:16000382 NCBI chrNW_004624770:9,936,202...10,051,018
Ensembl chrNW_004624770:9,941,706...10,051,024
JBrowse link
G Nup50 nucleoporin 50 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:4,429,650...4,449,507
Ensembl chrNW_004624752:4,433,365...4,449,769
JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:10500113) Roslin_Institute PMID:10500113 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389
JBrowse link
G Shh sonic hedgehog signaling molecule ISO RGD PMID:8124714 RGD:69996 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Stk3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19786569) UniProt
MGI
PMID:19786569 GO_REF:0000117 NCBI chrNW_004624763:5,568,079...5,886,722
Ensembl chrNW_004624763:5,564,835...5,886,769
JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624790:9,415,172...9,521,103
Ensembl chrNW_004624790:9,415,177...9,521,051
JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO (PMID:16357211) MGI PMID:16357211 NCBI chrNW_004624747:21,259,515...21,300,180
Ensembl chrNW_004624747:21,265,197...21,300,149
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:11406614) MGI PMID:11406614 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225
JBrowse link
neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl13b ARF like GTPase 13B involved_in ISO (PMID:23014696) UniProt PMID:23014696 NCBI chrNW_004624789:6,710,858...6,783,097
Ensembl chrNW_004624789:6,710,681...6,783,667
JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1 like acts_upstream_of_or_within ISO (PMID:29487109) MGI PMID:29487109 NCBI chrNW_004624730:14,568,625...14,619,673
Ensembl chrNW_004624730:14,568,382...14,619,272
JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:24009529) MGI PMID:24009529 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493
JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:8681379) BHF-UCL PMID:8681379 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389
JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17553904) MGI PMID:17553904 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115
JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:29487109) MGI PMID:29487109 NCBI chrNW_004624798:9,444,536...9,609,957
Ensembl chrNW_004624798:9,444,919...9,609,134
JBrowse link
G Tmem107 transmembrane protein 107 involved_in ISO (PMID:22698544) UniProt PMID:22698544 NCBI chrNW_004624786:10,742,842...10,745,381
Ensembl chrNW_004624786:10,741,929...10,745,359
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004624847:3,424,388...3,469,708
Ensembl chrNW_004624847:3,424,365...3,472,075
JBrowse link
notochord cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epha2 EPH receptor A2 acts_upstream_of_or_within ISO (PMID:11287184) MGI PMID:11287184 NCBI chrNW_004624764:2,265,114...2,296,032
Ensembl chrNW_004624764:2,264,945...2,296,197
JBrowse link
notochord development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein involved_in ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chrNW_004624740:3,332,977...3,399,915 JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in ISO (PMID:9119111) UniProt PMID:9119111 NCBI chrNW_004624816:4,273,969...4,304,519
Ensembl chrNW_004624816:4,274,219...4,304,513
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (PMID:16368929) MGI PMID:16368929 NCBI chrNW_004624860:4,968,624...4,970,362 JBrowse link
G Id3 inhibitor of DNA binding 3, HLH protein involved_in ISO (PMID:7655079) UniProt PMID:7655079 NCBI chrNW_004624764:8,175,841...8,177,444
Ensembl chrNW_004624764:8,175,372...8,177,451
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538
JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO (PMID:13837681), (PMID:15550757), (PMID:8155581)
(PMID:20197654)
(PMID:15231714), (PMID:17884984)
MGI PMID:8155581 PMID:13837681 PMID:15231714 PMID:15550757 PMID:17884984 More... NCBI chrNW_004624762:430,981...439,422 JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO (PMID:9119111) UniProt PMID:9119111 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596
JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004624859:5,510,442...5,572,122
Ensembl chrNW_004624859:5,510,384...5,572,228
JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (PMID:8155581)
(PMID:8293872)
(PMID:15384171)
MGI PMID:8155581 PMID:8293872 PMID:15384171 NCBI chrNW_004624785:13,058,520...13,066,607
Ensembl chrNW_004624785:13,058,444...13,066,719
JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004624766:4,694,337...4,935,121
Ensembl chrNW_004624766:4,694,016...4,928,302
JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004624832:4,821,697...4,837,257 JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004624878:621,214...776,363 JBrowse link
notochord formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:22072575) UniProt PMID:22072575 NCBI chrNW_004624760:11,576,683...11,598,354
Ensembl chrNW_004624760:11,579,163...11,598,287
JBrowse link
G Efna1 ephrin A1 acts_upstream_of_or_within ISO (PMID:11287184) MGI PMID:11287184 NCBI chrNW_004624885:2,382,712...2,388,805
Ensembl chrNW_004624885:2,383,045...2,389,107
JBrowse link
G Epha2 EPH receptor A2 acts_upstream_of_or_within ISO (PMID:11287184) MGI PMID:11287184 NCBI chrNW_004624764:2,265,114...2,296,032
Ensembl chrNW_004624764:2,264,945...2,296,197
JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (PMID:7589801) MGI PMID:7589801 NCBI chrNW_004624785:13,058,520...13,066,607
Ensembl chrNW_004624785:13,058,444...13,066,719
JBrowse link
notochord morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epha2 EPH receptor A2 acts_upstream_of_or_within ISO (PMID:11287184) MGI PMID:11287184 NCBI chrNW_004624764:2,265,114...2,296,032
Ensembl chrNW_004624764:2,264,945...2,296,197
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (PMID:22949634) MGI PMID:22949634 NCBI chrNW_004624887:1,065,173...1,279,660
Ensembl chrNW_004624887:1,065,883...1,279,186
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538
JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:16916379) MGI PMID:16916379 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Ppp1r35 protein phosphatase 1 regulatory subunit 35 involved_in ISO (PMID:32628936) UniProt PMID:32628936 NCBI chrNW_004624740:16,638,922...16,640,035
Ensembl chrNW_004624740:16,638,347...16,640,035
JBrowse link
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO (PMID:25813538) MGI PMID:25813538 NCBI chrNW_004624817:931,686...952,474
Ensembl chrNW_004624817:932,970...952,326
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:25813538) MGI PMID:25813538 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
notochord regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO (PMID:10725236) MGI PMID:10725236 NCBI chrNW_004624802:10,483,279...10,494,539
Ensembl chrNW_004624802:10,483,219...10,498,609
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:10725236) MGI PMID:10725236 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
olfactory placode formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou2f1 POU class 2 homeobox 1 acts_upstream_of_or_within ISO (PMID:17140559) MGI PMID:17140559 NCBI chrNW_004624826:5,334,365...5,501,421
Ensembl chrNW_004624826:5,334,366...5,493,821
JBrowse link
G Six1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671
JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (PMID:19027001) UniProt PMID:19027001 NCBI chrNW_004624734:40,397,276...40,409,951
Ensembl chrNW_004624734:40,397,559...40,409,997
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:17140559) MGI PMID:17140559 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871
JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO (PMID:23129809) MGI PMID:23129809 NCBI chrNW_004624764:10,672,673...10,759,634
Ensembl chrNW_004624764:10,672,735...10,759,634
JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:16611695) MGI PMID:16611695 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624768:3,851,361...3,885,609
Ensembl chrNW_004624768:3,851,257...3,885,609
JBrowse link
G Pax2 paired box 2 involved_in ISO (PMID:8951055) DFLAT PMID:8951055 NCBI chrNW_004624831:375,851...453,968
Ensembl chrNW_004624831:375,866...453,930
JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:20150232) UniProt PMID:20150232 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379
JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (PMID:11458394) UniProt PMID:11458394 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:20150232) UniProt PMID:20150232 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379
JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (PMID:17601531) MGI PMID:17601531 NCBI chrNW_004624767:17,353,989...17,360,857
Ensembl chrNW_004624767:17,353,989...17,360,705
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:17601531) MGI PMID:17601531 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:9435295) MGI PMID:9435295 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO (PMID:9620767) MGI PMID:9620767 NCBI chrNW_004624822:74,344...102,484
Ensembl chrNW_004624822:74,373...101,828
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:18377888) MGI PMID:18377888 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596
JBrowse link
G Tcap titin-cap involved_in ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chrNW_004624795:3,411,744...3,414,229
Ensembl chrNW_004624795:3,410,951...3,413,052
JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:16916509) MGI PMID:16916509 NCBI chrNW_004624744:19,782,174...19,975,496
Ensembl chrNW_004624744:19,782,790...19,977,335
JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:17074316) MGI PMID:17074316 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098
JBrowse link
otolith morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO (PMID:5367369) MGI PMID:5367369 NCBI chrNW_004624756:17,595,404...17,628,972
Ensembl chrNW_004624756:17,595,470...17,631,433
JBrowse link
G Lrig1 leucine rich repeats and immunoglobulin like domains 1 acts_upstream_of_or_within ISO (PMID:24086156) MGI PMID:24086156 NCBI chrNW_004624773:712,193...850,086
Ensembl chrNW_004624773:713,520...849,999
JBrowse link
G Lrig3 leucine rich repeats and immunoglobulin like domains 3 acts_upstream_of_or_within ISO (PMID:24086156) MGI PMID:24086156 NCBI chrNW_004624802:8,801,368...8,848,718
Ensembl chrNW_004624802:8,801,280...8,848,024
JBrowse link
G Ttc39c tetratricopeptide repeat domain 39C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624770:8,086,597...8,189,139
Ensembl chrNW_004624770:8,086,749...8,189,701
JBrowse link
outer ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:10471511) MGI PMID:10471511 NCBI chrNW_004624744:19,782,174...19,975,496
Ensembl chrNW_004624744:19,782,790...19,977,335
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (PMID:15630379) MGI PMID:15630379 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17525797) MGI PMID:17525797 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596
JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chrNW_004624739:3,509,020...3,511,890
Ensembl chrNW_004624739:3,508,838...3,511,864
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 acts_upstream_of_or_within ISO (PMID:18952847) MGI PMID:18952847 NCBI chrNW_004624747:1,296,062...1,389,674
Ensembl chrNW_004624747:1,296,221...1,389,757
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 acts_upstream_of_or_within ISO (PMID:18952847) MGI PMID:18952847 NCBI chrNW_004624782:13,150,824...13,158,327
Ensembl chrNW_004624782:13,152,039...13,159,113
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 acts_upstream_of_or_within ISO (PMID:16571658) MGI PMID:16571658 NCBI chrNW_004624844:410,461...424,833
Ensembl chrNW_004624844:410,461...424,809
JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:16600992) MGI PMID:16600992 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098
JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:17127413) MGI PMID:17127413 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family member 6 involved_in ISO (PMID:21397848) UniProt PMID:21397848 NCBI chrNW_004624849:4,202,398...4,245,217
Ensembl chrNW_004624849:4,224,986...4,227,755
JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624771:2,711,791...2,818,031 JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624825:3,302,796...3,376,971
Ensembl chrNW_004624825:3,303,041...3,386,606
JBrowse link
G Tdrkh tudor and KH domain containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:19,447,092...19,463,796
Ensembl chrNW_004624772:19,444,049...19,463,788
JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exoc4 exocyst complex component 4 acts_upstream_of_or_within ISO (PMID:9441674) MGI PMID:9441674 NCBI chrNW_004624783:2,315,128...3,165,343
Ensembl chrNW_004624783:2,316,300...3,165,255
JBrowse link
G Foxc1 forkhead box C1 involved_in
acts_upstream_of_or_within
ISO (PMID:15196959)
(PMID:11562355)
UniProt
MGI
PMID:11562355 PMID:15196959 NCBI chrNW_004624756:23,060,065...23,062,407
Ensembl chrNW_004624756:23,060,751...23,062,343
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:11562355) MGI PMID:11562355 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO (PMID:10090727) MGI PMID:10090727 NCBI chrNW_004624747:12,717,713...12,746,040
Ensembl chrNW_004624747:12,717,707...12,746,724
JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO (PMID:16109169) MGI PMID:16109169 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:10090727) MGI PMID:10090727 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389
JBrowse link
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO (PMID:25813538) MGI PMID:25813538 NCBI chrNW_004624817:931,686...952,474
Ensembl chrNW_004624817:932,970...952,326
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:25813538) MGI PMID:25813538 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9106663) MGI PMID:9106663 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:9126297) MGI PMID:9126297 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458
JBrowse link
pericardium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624850:3,324,553...3,481,439
Ensembl chrNW_004624850:3,322,782...3,481,512
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (PMID:10079236) BHF-UCL PMID:10079236 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742
JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624804:8,179,729...8,189,001
Ensembl chrNW_004624804:8,179,731...8,191,284
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of
acts_upstream_of_or_within
ISO (PMID:19056682)
(PMID:19795512)
MGI PMID:19056682 PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Notch1 notch receptor 1 involved_in ISO (PMID:14701881), (PMID:20890042), (PMID:21311046) BHF-UCL PMID:14701881 PMID:20890042 PMID:21311046 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531
JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within ISO (PMID:9030684) MGI PMID:9030684 NCBI chrNW_004624738:20,466,120...20,591,966
Ensembl chrNW_004624738:20,466,117...20,591,910
JBrowse link
G Tbx20 T-box transcription factor 20 involved_in ISO (PMID:15901664) BHF-UCL PMID:15901664 NCBI chrNW_004624740:25,645,526...25,698,235
Ensembl chrNW_004624740:25,645,895...25,697,132
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
pharyngeal arch artery morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrf4 adhesion G protein-coupled receptor F4 acts_upstream_of_or_within ISO (PMID:28806758) MGI PMID:28806758 NCBI chrNW_004624754:13,363,968...13,382,630 JBrowse link
G Adgrf5 adhesion G protein-coupled receptor F5 acts_upstream_of_or_within ISO (PMID:28806758) MGI PMID:28806758 NCBI chrNW_004624754:13,778,573...13,843,931
Ensembl chrNW_004624754:13,778,170...13,843,723
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISO (PMID:15070745) BHF-UCL PMID:15070745 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in ISO (PMID:15073157) BHF-UCL PMID:15073157 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in
NOT|involved_in
ISO (PMID:12441304)
(PMID:19409885)
BHF-UCL PMID:12441304 PMID:19409885 NCBI chrNW_004624765:13,849,689...13,950,839
Ensembl chrNW_004624765:13,857,062...13,947,683
JBrowse link
G Edn1 endothelin 1 involved_in ISO (PMID:23933587) MGI PMID:23933587 NCBI chrNW_004624756:13,842,482...13,849,003
Ensembl chrNW_004624756:13,842,164...13,849,029
JBrowse link
G Ednra endothelin receptor type A involved_in ISO (PMID:23933587)
(PMID:31219639)
MGI PMID:23933587 PMID:31219639 NCBI chrNW_004624853:6,298,406...6,362,353
Ensembl chrNW_004624853:6,302,751...6,360,089
JBrowse link
G Folr1 folate receptor alpha involved_in ISO (PMID:17286298) BHF-UCL PMID:17286298 NCBI chrNW_004624817:4,830,164...4,850,565
Ensembl chrNW_004624817:4,820,163...4,851,339
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in ISO (PMID:20122914) BHF-UCL PMID:20122914 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781
JBrowse link
G Megf8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (PMID:32203821) MGI PMID:32203821 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091
JBrowse link
G Nog noggin involved_in ISO (PMID:17218603) BHF-UCL PMID:17218603 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:23319608) MGI PMID:23319608 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968
JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643
JBrowse link
pharyngeal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:7,929,997...8,004,235
Ensembl chrNW_004624732:7,929,583...8,005,072
JBrowse link
G Bmp5 bone morphogenetic protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624850:3,324,553...3,481,439
Ensembl chrNW_004624850:3,322,782...3,481,512
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (PMID:10079236) BHF-UCL PMID:10079236 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742
JBrowse link
G Ece1 endothelin converting enzyme 1 acts_upstream_of_or_within ISO (PMID:12950083) MGI PMID:12950083 NCBI chrNW_004624764:6,222,301...6,318,423
Ensembl chrNW_004624764:6,221,867...6,318,477
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:21364285) MGI PMID:21364285 NCBI chrNW_004624744:19,782,174...19,975,496
Ensembl chrNW_004624744:19,782,790...19,977,335
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:21364285) MGI PMID:21364285 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741
JBrowse link
G Foxi3 forkhead box I3 involved_in ISO (PMID:37041148)
(PMID:24650709), (PMID:37041148)
UniProt PMID:24650709 PMID:37041148 NCBI chrNW_004624749:16,033,754...16,041,679
Ensembl chrNW_004624749:16,033,767...16,039,249
JBrowse link
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624775:2,985,077...3,014,567
Ensembl chrNW_004624775:2,994,164...3,015,392
JBrowse link
G Hoxa2 homeobox A2 involved_in ISO (PMID:25889273) MGI PMID:25889273 NCBI chrNW_004624739:3,501,671...3,504,939
Ensembl chrNW_004624739:3,501,817...3,504,750
JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:7,996,177...8,006,281
Ensembl chrNW_004624759:7,994,242...8,006,311
JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:16,881,189...16,884,245
Ensembl chrNW_004624733:16,881,191...16,884,210
JBrowse link
G Nkx2-6 NK2 homeobox 6 acts_upstream_of_or_within
involved_in
IEA
ISO
(PMID:9486544), (PMID:9545560), (PMID:9621431) Ensembl
BHF-UCL
PMID:9486544 PMID:9545560 PMID:9621431 GO_REF:0000107 NCBI chrNW_004624758:18,908,988...18,914,794
Ensembl chrNW_004624758:18,911,010...18,914,001
JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO (PMID:9621431) BHF-UCL PMID:9621431 NCBI chrNW_004624758:18,874,399...18,876,982
Ensembl chrNW_004624758:18,875,475...18,876,971
JBrowse link
G Plxna2 plexin A2 involved_in ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004624807:3,643,283...3,829,817
Ensembl chrNW_004624807:3,643,255...3,834,128
JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:8681379), (PMID:8981943) BHF-UCL PMID:8681379 PMID:8981943 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389
JBrowse link
G Ripply3 ripply transcriptional repressor 3 involved_in ISO (PMID:21177346) UniProt PMID:21177346 NCBI chrNW_004624745:26,636,307...26,658,373 JBrowse link
G Six1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21364285) Ensembl
MGI
PMID:21364285 GO_REF:0000107 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671
JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (PMID:16530750) UniProt PMID:16530750 NCBI chrNW_004624734:40,397,276...40,409,951
Ensembl chrNW_004624734:40,397,559...40,409,997
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISO (PMID:14585638)
(PMID:16141220)
(PMID:21177346)
(PMID:21364285)
UniProt
MGI
PMID:14585638 PMID:16141220 PMID:21177346 PMID:21364285 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098
JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (PMID:15459098) BHF-UCL PMID:15459098 NCBI chrNW_004624871:2,428,757...2,437,447
Ensembl chrNW_004624871:2,429,407...2,437,447
JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:17078885) MGI PMID:17078885 NCBI chrNW_004624825:1,773,158...1,899,120
Ensembl chrNW_004624825:1,839,178...1,899,156
JBrowse link
positive regulation of dermatome development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606
JBrowse link
G Wnt3a Wnt family member 3A involved_in ISO (PMID:10654605) BHF-UCL PMID:10654605 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458
JBrowse link
G Wnt4 Wnt family member 4 involved_in ISO (PMID:10654605) BHF-UCL PMID:10654605 NCBI chrNW_004624764:6,913,027...6,934,650
Ensembl chrNW_004624764:6,921,811...6,933,392
JBrowse link
positive regulation of embryonic development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amot angiomotin acts_upstream_of_or_within ISO (PMID:12676095) MGI PMID:12676095 NCBI chrNW_004624803:2,405,037...2,491,715
Ensembl chrNW_004624803:2,422,274...2,488,097
JBrowse link
G B4galt5 beta-1,4-galactosyltransferase 5 involved_in ISO (PMID:20574042) UniProt PMID:20574042 NCBI chrNW_004624790:5,770,586...5,792,036
Ensembl chrNW_004624790:5,766,903...5,789,140
JBrowse link
G Cfl1 cofilin 1 involved_in ISO (PMID:25208553) UniProt PMID:25208553 NCBI chrNW_004624767:20,574,884...20,578,413
Ensembl chrNW_004624767:20,574,966...20,579,796
JBrowse link
G Foxa2 forkhead box A2 involved_in ISO (PMID:11291865) UniProt PMID:11291865 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854
JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (PMID:11291865) UniProt PMID:11291865 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033
JBrowse link
G Nr2c2 nuclear receptor subfamily 2 group C member 2 involved_in ISO (PMID:19131575) UniProt PMID:19131575 NCBI chrNW_004624872:953,428...1,028,738
Ensembl chrNW_004624872:953,097...981,974
JBrowse link
G Otx2 orthodenticle homeobox 2 involved_in ISO (PMID:11291865) UniProt PMID:11291865 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in ISO (PMID:23533177) CACAO PMID:23533177 NCBI chrNW_004624786:5,223,890...5,306,033
Ensembl chrNW_004624786:5,224,982...5,302,436
JBrowse link
G Plcb1 phospholipase C beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624741:9,030,817...9,859,597
Ensembl chrNW_004624741:9,031,204...9,856,556
JBrowse link
G Rbm19 RNA binding motif protein 19 involved_in ISO (PMID:16027046) UniProt PMID:16027046 NCBI chrNW_004624747:18,754,167...18,853,068
Ensembl chrNW_004624747:18,754,297...18,852,333
JBrowse link
G Tle6 TLE family member 6, subcortical maternal complex member involved_in ISO (PMID:25208553) UniProt PMID:25208553 NCBI chrNW_004624828:6,149,869...6,157,875 JBrowse link
G Utp25 UTP25 small subunit processome component involved_in ISO (PMID:29262616) UniProt PMID:29262616 NCBI chrNW_004624807:2,069,501...2,166,859
Ensembl chrNW_004624807:2,145,963...2,166,885
JBrowse link
G Zbed3 zinc finger BED-type containing 3 involved_in ISO (PMID:28992324) UniProt PMID:28992324 NCBI chrNW_004624869:1,586,477...1,602,312 JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101706296 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,650,067...11,714,399
Ensembl chrNW_004624733:11,650,537...11,715,999
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 acts_upstream_of_or_within ISO (PMID:16908534) MGI PMID:16908534 NCBI chrNW_004624781:6,222,365...6,285,398
Ensembl chrNW_004624781:6,222,365...6,285,531
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:17940068) MGI PMID:17940068 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
positive regulation of gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISO (PMID:11291865) UniProt PMID:11291865 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854
JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (PMID:11291865) UniProt PMID:11291865 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:21281489) UniProt PMID:21281489 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO (PMID:21281489) UniProt PMID:21281489 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437
JBrowse link
G Otx2 orthodenticle homeobox 2 involved_in ISO (PMID:11291865) UniProt PMID:11291865 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:10477299) UniProt PMID:10477299 NCBI chrNW_004624735:12,579,963...12,583,128
Ensembl chrNW_004624735:12,579,956...12,581,736
JBrowse link
G Tenm4 teneurin transmembrane protein 4 involved_in ISO (PMID:15489520) UniProt PMID:15489520 NCBI chrNW_004624863:1,643,173...2,374,330
Ensembl chrNW_004624863:1,643,076...2,149,630
JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624798:9,358,996...9,364,413
Ensembl chrNW_004624798:9,359,004...9,364,313
JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A involved_in ISO (PMID:20559569) BHF-UCL PMID:20559569 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458
JBrowse link
positive regulation of mitotic cell cycle, embryonic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in ISO (PMID:19609448) BHF-UCL PMID:19609448 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781
JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:18827006) MGI PMID:18827006 NCBI chrNW_004624752:9,072,471...9,088,289
Ensembl chrNW_004624752:9,072,512...9,088,593
JBrowse link
positive regulation of myotome development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO (PMID:16387292) MGI PMID:16387292 NCBI chrNW_004624736:5,721,984...5,730,558
Ensembl chrNW_004624736:5,722,404...5,730,633
JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stox1 storkhead box 1 involved_in ISO (PMID:25677106) UniProt PMID:25677106 NCBI chrNW_004624754:3,110,951...3,119,511
Ensembl chrNW_004624754:3,111,269...3,122,425
JBrowse link
positive regulation of sclerotome development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule involved_in ISO (PMID:10654605) BHF-UCL PMID:10654605 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
positive regulation of trophectodermal cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csf2 colony stimulating factor 2 involved_in ISO (PMID:16792532), (PMID:24520418) AgBase PMID:16792532 PMID:24520418 NCBI chrNW_004624733:40,039,127...40,041,294
Ensembl chrNW_004624733:40,039,414...40,041,294
JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO (PMID:15901638) MGI PMID:15901638 NCBI chrNW_004624795:704,066...708,721
Ensembl chrNW_004624795:704,252...707,165
JBrowse link
G Igf1 insulin like growth factor 1 involved_in ISO (PMID:24508636) AgBase PMID:24508636 NCBI chrNW_004624750:5,881,065...5,954,799
Ensembl chrNW_004624750:5,881,091...5,952,300
JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624775:2,985,077...3,014,567
Ensembl chrNW_004624775:2,994,164...3,015,392
JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (PMID:8657307) UniProt PMID:8657307 NCBI chrNW_004624759:17,263,570...17,290,046
Ensembl chrNW_004624759:17,263,969...17,287,723
JBrowse link
G Six1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671
JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (PMID:17300925) UniProt PMID:17300925 NCBI chrNW_004624734:40,397,276...40,409,951
Ensembl chrNW_004624734:40,397,559...40,409,997
JBrowse link
primary lung bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:16364283) MGI PMID:16364283 NCBI chrNW_004624737:3,897,907...3,903,828
Ensembl chrNW_004624737:3,897,871...3,904,083
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431
JBrowse link
primitive erythrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata1 GATA binding protein 1 acts_upstream_of_or_within ISO (PMID:9139715) MGI PMID:9139715 NCBI chrNW_004624893:595,948...602,980
Ensembl chrNW_004624893:595,967...602,979
JBrowse link
G Hscb HscB mitochondrial iron-sulfur cluster cochaperone involved_in ISO (PMID:32634119) UniProt PMID:32634119 NCBI chrNW_004624747:5,072,708...5,094,404 JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:16287714) MGI PMID:16287714 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO (PMID:14729577) MGI PMID:14729577 NCBI chrNW_004624754:15,929,414...15,943,637 JBrowse link
G Zfpm1 zinc finger protein, FOG family member 1 acts_upstream_of_or_within ISO (PMID:9553047) MGI PMID:9553047 NCBI chrNW_004624746:988,114...1,035,697
Ensembl chrNW_004624746:988,512...1,017,652
JBrowse link
primitive hemopoiesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hscb HscB mitochondrial iron-sulfur cluster cochaperone involved_in ISO (PMID:32634119) UniProt PMID:32634119 NCBI chrNW_004624747:5,072,708...5,094,404 JBrowse link
G Stk3 serine/threonine kinase 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:19786569) MGI
UniProt
PMID:19786569 GO_REF:0000117 NCBI chrNW_004624763:5,568,079...5,886,722
Ensembl chrNW_004624763:5,564,835...5,886,769
JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624790:9,415,172...9,521,103
Ensembl chrNW_004624790:9,415,177...9,521,051
JBrowse link
G Thoc5 THO complex subunit 5 involved_in ISO (PMID:20051105) UniProt PMID:20051105 NCBI chrNW_004624747:5,840,862...5,874,350
Ensembl chrNW_004624747:5,840,862...5,874,334
JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO (PMID:23552073) MGI PMID:23552073 NCBI chrNW_004624745:25,096,587...25,113,953
Ensembl chrNW_004624745:25,096,337...25,110,123
JBrowse link
G Foxa2 forkhead box A2 involved_in
acts_upstream_of_or_within
ISO (PMID:11291865) UniProt
MGI
PMID:11291865 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (PMID:16368929) MGI PMID:16368929 NCBI chrNW_004624860:4,968,624...4,970,362 JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:21445260) MGI PMID:21445260 NCBI chrNW_004624737:3,897,907...3,903,828
Ensembl chrNW_004624737:3,897,871...3,904,083
JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISO (PMID:11291865) UniProt
MGI
PMID:11291865 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:21445260)
(PMID:14511481)
MGI PMID:14511481 PMID:21445260 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Otx2 orthodenticle homeobox 2 involved_in
acts_upstream_of_or_within
ISO (PMID:11291865) UniProt
MGI
PMID:11291865 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:9799237) MGI PMID:9799237 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:16397896) MGI PMID:16397896 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093
JBrowse link
proepicardium cell migration involved in pericardium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flrt3 fibronectin leucine rich transmembrane protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624741:15,343,304...15,355,742
Ensembl chrNW_004624741:15,343,653...15,355,727
JBrowse link
prostate induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within ISO (PMID:17317769) MGI PMID:17317769 NCBI chrNW_004624891:3,135,824...3,330,487
Ensembl chrNW_004624891:3,138,848...3,329,459
JBrowse link
prostatic bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of ISO (PMID:11401393) MGI PMID:11401393 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:16707121) MGI PMID:16707121 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:18028901) MGI PMID:18028901 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Shh sonic hedgehog signaling molecule NOT|acts_upstream_of_or_within ISO (PMID:15013801) MGI PMID:15013801 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:67,283,444...67,489,808
Ensembl chrNW_004624730:67,286,160...67,489,670
JBrowse link
regulation of blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agbl4 AGBL carboxypeptidase 4 acts_upstream_of_or_within ISO (PMID:29593216) MGI PMID:29593216 NCBI chrNW_004624859:3,061,185...4,420,220
Ensembl chrNW_004624859:3,061,342...4,418,967
JBrowse link
G Klf4 KLF transcription factor 4 acts_upstream_of_or_within ISO (PMID:29593216) MGI PMID:29593216 NCBI chrNW_004624758:4,047,217...4,052,257
Ensembl chrNW_004624758:4,047,219...4,051,983
JBrowse link
G Ttll1 TTL family tubulin polyglutamylase complex subunit L1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:5,883,039...5,901,333
Ensembl chrNW_004624752:5,883,042...5,903,687
JBrowse link
G Ttll4 tubulin tyrosine ligase like 4 acts_upstream_of_or_within ISO (PMID:29593216) MGI PMID:29593216 NCBI chrNW_004624823:6,314,177...6,352,236
Ensembl chrNW_004624823:6,310,738...6,352,333
JBrowse link
regulation of cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcm1 glial cells missing transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624850:405,001...421,208
Ensembl chrNW_004624850:406,840...421,128
JBrowse link
G Stk3 serine/threonine kinase 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:24595170) MGI
UniProt
PMID:24595170 GO_REF:0000117 NCBI chrNW_004624763:5,568,079...5,886,722
Ensembl chrNW_004624763:5,564,835...5,886,769
JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within
involved_in
IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624790:9,415,172...9,521,103
Ensembl chrNW_004624790:9,415,177...9,521,051
JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004624730:12,384,691...12,568,115
Ensembl chrNW_004624730:12,429,902...12,567,683
JBrowse link
regulation of embryonic development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:57,305,105...57,337,653
Ensembl chrNW_004624730:57,305,053...57,337,797
JBrowse link
G Actr5 actin related protein 5 involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chrNW_004624842:910,178...933,495
Ensembl chrNW_004624842:912,336...933,573
JBrowse link
G Actr8 actin related protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624822:3,319,694...3,335,359
Ensembl chrNW_004624822:3,319,439...3,335,360
JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:16287848) UniProt PMID:16287848 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:22422825) UniProt PMID:22422825 NCBI chrNW_004624730:31,857,157...31,913,985
Ensembl chrNW_004624730:31,855,992...31,914,253
JBrowse link
G Dr1 down-regulator of transcription 1 involved_in ISO (PMID:19103755) ComplexPortal PMID:19103755 NCBI chrNW_004624742:4,263,288...4,282,097
Ensembl chrNW_004624742:4,263,288...4,282,609
JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 involved_in ISO (PMID:15774718) UniProt PMID:15774718 NCBI chrNW_004624760:271,397...463,462
Ensembl chrNW_004624760:272,493...379,780
JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO (PMID:31761678) MGI PMID:31761678 NCBI chrNW_004624822:74,344...102,484
Ensembl chrNW_004624822:74,373...101,828
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chrNW_004624804:8,223,626...8,353,339
Ensembl chrNW_004624804:8,223,550...8,321,756
JBrowse link
G Ino80b INO80 complex subunit B involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chrNW_004624749:29,048,492...29,051,459 JBrowse link
G Ino80c INO80 complex subunit C involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chrNW_004624779:9,843,068...9,861,959
Ensembl chrNW_004624779:9,843,065...9,862,137
JBrowse link
G Ino80d INO80 complex subunit D involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chrNW_004624765:10,040,259...10,127,449
Ensembl chrNW_004624765:10,057,460...10,116,802
JBrowse link
G Insr insulin receptor involved_in ISO (PMID:7693131) BHF-UCL PMID:7693131 NCBI chrNW_004624828:345,135...485,856
Ensembl chrNW_004624828:345,135...486,184
JBrowse link
G Kat14 lysine acetyltransferase 14 involved_in ISO (PMID:19103755) ComplexPortal PMID:19103755 NCBI chrNW_004624741:19,044,033...19,077,163
Ensembl chrNW_004624741:19,043,628...19,077,450
JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in ISO (PMID:19103755) ComplexPortal PMID:19103755 NCBI chrNW_004624795:1,782,367...1,787,408
Ensembl chrNW_004624795:1,782,366...1,788,951
JBrowse link
G Lama1 laminin subunit alpha 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624770:16,358,952...16,490,986
Ensembl chrNW_004624770:16,359,255...16,462,817
JBrowse link
G Lama2 laminin subunit alpha 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624753:3,194,678...3,794,145
Ensembl chrNW_004624753:3,336,227...3,793,940
JBrowse link
G Lama3 laminin subunit alpha 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624770:8,237,085...8,482,770 JBrowse link
G Lama5 laminin subunit alpha 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624741:28,156,956...28,217,133
Ensembl chrNW_004624741:28,157,172...28,217,113
JBrowse link
G Mbip MAP3K12 binding inhibitory protein 1 involved_in ISO (PMID:19103755) ComplexPortal PMID:19103755 NCBI chrNW_004624838:508,660...527,306
Ensembl chrNW_004624838:508,732...528,161
JBrowse link
G Mcrs1 microspherule protein 1 involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chrNW_004624816:2,673,058...2,683,306 JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 acts_upstream_of_or_within ISO (PMID:15087497) MGI PMID:15087497 NCBI chrNW_004624787:14,355,330...14,381,353
Ensembl chrNW_004624787:14,355,791...14,381,251
JBrowse link
G Nfrkb nuclear factor related to kappaB binding protein involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chrNW_004624812:4,248,077...4,282,948
Ensembl chrNW_004624812:4,249,350...4,280,182
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:19242925) BHF-UCL PMID:19242925 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295
JBrowse link
G Noct nocturnin involved_in ISO (PMID:23449310) UniProt PMID:23449310 NCBI chrNW_004624777:19,379,447...19,383,477 JBrowse link
G Phlda2 pleckstrin homology like domain family A member 2 acts_upstream_of_or_within ISO (PMID:19884348) MGI PMID:19884348 NCBI chrNW_004624767:15,678,897...15,680,656
Ensembl chrNW_004624767:15,679,481...15,679,876
JBrowse link
G Rab14 RAB14, member RAS oncogene family involved_in ISO (PMID:21238925) UniProt PMID:21238925 NCBI chrNW_004624760:14,069,403...14,096,684
Ensembl chrNW_004624760:14,069,387...14,096,684
JBrowse link
G Racgap1 Rac GTPase activating protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:2,268,879...2,303,305
Ensembl chrNW_004624816:2,273,856...2,303,375
JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chrNW_004624961:427,836...460,887 JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chrNW_004624832:5,014,484...5,028,868
Ensembl chrNW_004624832:5,014,484...5,028,885
JBrowse link
G Sgf29 SAGA complex associated factor 29 involved_in ISO (PMID:19103755) ComplexPortal PMID:19103755 NCBI chrNW_004624782:13,054,643...13,076,640
Ensembl chrNW_004624782:13,054,343...13,072,515
JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (PMID:11973269) UniProt PMID:11973269 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
G Tada2a transcriptional adaptor 2A involved_in ISO (PMID:19103755) ComplexPortal PMID:19103755 NCBI chrNW_004624871:4,412,703...4,478,275
Ensembl chrNW_004624871:4,415,409...4,469,359
JBrowse link
G Tada3 transcriptional adaptor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624731:4,409,550...4,420,498
Ensembl chrNW_004624731:4,408,918...4,419,545
JBrowse link
G Tdg thymine DNA glycosylase involved_in ISO (PMID:21278727), (PMID:21722948) UniProt PMID:21278727 PMID:21722948 NCBI chrNW_004624750:4,707,347...4,723,307
Ensembl chrNW_004624750:4,708,944...4,722,872
JBrowse link
G Tfpt TCF3 fusion partner involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chrNW_004624832:2,455,643...2,459,379
Ensembl chrNW_004624832:2,455,422...2,459,367
JBrowse link
G Trip12 thyroid hormone receptor interactor 12 involved_in ISO (PMID:22028794) UniProt PMID:22028794 NCBI chrNW_004624843:3,589,068...3,723,115
Ensembl chrNW_004624843:3,586,734...3,722,237
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chrNW_004624814:529,100...568,387
Ensembl chrNW_004624814:529,084...567,666
JBrowse link
G Wdr5 WD repeat domain 5 involved_in ISO (PMID:19103755) ComplexPortal PMID:19103755 NCBI chrNW_004624760:2,275,660...2,291,796
Ensembl chrNW_004624760:2,274,813...2,292,379
JBrowse link
G Yeats2 YEATS domain containing 2 involved_in ISO (PMID:19103755) ComplexPortal PMID:19103755 NCBI chrNW_004624730:72,693,216...72,781,611
Ensembl chrNW_004624730:72,693,218...72,781,276
JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chrNW_004624734:3,846,753...3,875,294
Ensembl chrNW_004624734:3,846,765...3,875,294
JBrowse link
G Zzz3 zinc finger ZZ-type containing 3 involved_in ISO (PMID:19103755) ComplexPortal PMID:19103755 NCBI chrNW_004624742:19,515,291...19,630,055
Ensembl chrNW_004624742:19,562,574...19,625,049
JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982
JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (PMID:19966784) MGI PMID:19966784 NCBI chrNW_004624830:268,764...334,660 JBrowse link
regulation of gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:26496195) UniProt PMID:26496195 NCBI chrNW_004624760:11,576,683...11,598,354
Ensembl chrNW_004624760:11,579,163...11,598,287
JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624790:10,039,344...10,065,167
Ensembl chrNW_004624790:10,038,999...10,100,649
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:20040491) MGI PMID:20040491 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 involved_in ISO (PMID:26496195) UniProt PMID:26496195 NCBI chrNW_004624731:28,682,594...28,701,841
Ensembl chrNW_004624731:28,682,636...28,702,806
JBrowse link
G Tgif1 TGFB induced factor homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20040491) UniProt
MGI
PMID:20040491 GO_REF:0000117 NCBI chrNW_004624770:13,506,501...13,515,388
Ensembl chrNW_004624770:13,508,409...13,516,457
JBrowse link
G Tgif2 TGFB induced factor homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20040491) MGI
UniProt
PMID:20040491 GO_REF:0000117 NCBI chrNW_004624842:2,909,016...2,926,555 JBrowse link
regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf207 ring finger protein 207 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:5,176,316...5,183,610
Ensembl chrNW_004624818:5,178,299...5,183,610
JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:16943278) MGI PMID:16943278 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (PMID:16943278) MGI PMID:16943278 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870
JBrowse link
regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:17881493) MGI PMID:17881493 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743
JBrowse link
regulation of mitotic cell cycle, embryonic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E4f1 E4F transcription factor 1 acts_upstream_of_or_within ISO (PMID:15226446) MGI PMID:15226446 NCBI chrNW_004624824:38,062...50,183
Ensembl chrNW_004624824:38,146...49,019
JBrowse link
regulation of neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A NOT|involved_in ISO (PMID:15073157) BHF-UCL PMID:15073157 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397
JBrowse link
regulation of primitive erythrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata1 GATA binding protein 1 acts_upstream_of_or_within ISO (PMID:14504093) MGI PMID:14504093 NCBI chrNW_004624893:595,948...602,980
Ensembl chrNW_004624893:595,967...602,979
JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO (PMID:14504093) MGI PMID:14504093 NCBI chrNW_004624961:147,685...155,614
Ensembl chrNW_004624961:143,358...154,003
JBrowse link
G Kdm1a lysine demethylase 1A involved_in ISO (PMID:17707228) UniProt PMID:17707228 NCBI chrNW_004624764:7,664,550...7,742,494 JBrowse link
regulation of prostatic bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within ISO (PMID:12941620) MGI PMID:12941620 NCBI chrNW_004624891:3,135,824...3,330,487
Ensembl chrNW_004624891:3,138,848...3,329,459
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:18393306)
(PMID:12221011)
MGI PMID:12221011 PMID:18393306 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 involved_in ISO (PMID:22015720) UniProt PMID:22015720 NCBI chrNW_004624774:9,479,173...9,494,962
Ensembl chrNW_004624774:9,479,255...9,494,061
JBrowse link
G Cdx2 caudal type homeobox 2 involved_in ISO (PMID:22015720) UniProt PMID:22015720 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (PMID:26114479) UniProt PMID:26114479 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404
JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO (PMID:17974128) MGI PMID:17974128 NCBI chrNW_004624736:5,721,984...5,730,558
Ensembl chrNW_004624736:5,722,404...5,730,633
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
ISO (PMID:19061953)
(PMID:19779553)
UniProt
MGI
PMID:19061953 PMID:19779553 NCBI chrNW_004624740:30,392,342...30,404,003
Ensembl chrNW_004624740:30,392,079...30,404,068
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:7789282) MGI PMID:7789282 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO (PMID:17974128) MGI PMID:17974128 NCBI chrNW_004624823:2,870,762...2,963,134
Ensembl chrNW_004624823:2,871,162...2,961,944
JBrowse link
regulation of spongiotrophoblast cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrk Nik related kinase acts_upstream_of_or_within ISO (PMID:21715335) MGI PMID:21715335 NCBI chrNW_004624803:10,719,694...10,861,120 JBrowse link
G Phlda2 pleckstrin homology like domain family A member 2 acts_upstream_of_or_within ISO (PMID:26476147) MGI PMID:26476147 NCBI chrNW_004624767:15,678,897...15,680,656
Ensembl chrNW_004624767:15,679,481...15,679,876
JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in ISO PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chrNW_004624759:17,263,570...17,290,046
Ensembl chrNW_004624759:17,263,969...17,287,723
JBrowse link
roof plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO (PMID:10693795) MGI PMID:10693795 NCBI chrNW_004624738:3,281,828...3,286,627 JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:14,952,313...14,975,678
Ensembl chrNW_004624762:14,952,002...14,975,900
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO (PMID:8887324) MGI PMID:8887324 NCBI chrNW_004624796:6,277,201...6,282,830
Ensembl chrNW_004624796:6,274,561...6,282,984
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:19913509) MGI PMID:19913509 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
sclerotome development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Meox1 mesenchyme homeobox 1 involved_in ISO (PMID:15024065), (PMID:19520072) UniProt PMID:15024065 PMID:19520072 NCBI chrNW_004624795:1,032,278...1,041,635
Ensembl chrNW_004624795:1,032,546...1,040,007
JBrowse link
G Pax1 paired box 1 involved_in ISO (PMID:7743923) UniProt PMID:7743923 NCBI chrNW_004624741:22,009,733...22,017,377
Ensembl chrNW_004624741:22,007,778...22,017,325
JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:7743923) UniProt PMID:7743923 NCBI chrNW_004624735:12,579,963...12,583,128
Ensembl chrNW_004624735:12,579,956...12,581,736
JBrowse link
G Sfrp2 secreted frizzled related protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591
JBrowse link
semicircular canal formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chrNW_004624739:3,509,020...3,511,890
Ensembl chrNW_004624739:3,508,838...3,511,864
JBrowse link
semicircular canal fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
semicircular canal morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO (PMID:19855134) MGI PMID:19855134 NCBI chrNW_004624744:31,103,053...31,302,314
Ensembl chrNW_004624744:31,103,059...31,235,623
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:10072433) MGI PMID:10072433 NCBI chrNW_004624744:19,782,174...19,975,496
Ensembl chrNW_004624744:19,782,790...19,977,335
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (PMID:17601531) MGI PMID:17601531 NCBI chrNW_004624767:17,353,989...17,360,857
Ensembl chrNW_004624767:17,353,989...17,360,705
JBrowse link
G Nr4a3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:11784868) MGI PMID:11784868 NCBI chrNW_004624825:1,098,915...1,141,373
Ensembl chrNW_004624825:1,097,432...1,141,446
JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:19855134) MGI PMID:19855134 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:33795231) UniProt PMID:33795231 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:21980308) MGI PMID:21980308 NCBI chrNW_004624805:3,964,448...4,044,546
Ensembl chrNW_004624805:3,964,450...4,042,527
JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:20159594)
(PMID:17395647)
MGI PMID:17395647 PMID:20159594 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:17395647)
(PMID:20159594)
MGI PMID:17395647 PMID:20159594 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:22689656) MGI PMID:22689656 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323
JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004624798:9,444,536...9,609,957
Ensembl chrNW_004624798:9,444,919...9,609,134
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19223390) MGI PMID:19223390 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22689656) MGI PMID:22689656 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997
JBrowse link
somite development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frzb frizzled related protein involved_in ISO (PMID:10654605) BHF-UCL PMID:10654605 NCBI chrNW_004624844:4,608,016...4,639,582
Ensembl chrNW_004624844:4,608,016...4,643,141
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769
JBrowse link
G Loxl3 lysyl oxidase like 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624749:28,959,682...28,980,428
Ensembl chrNW_004624749:28,960,593...28,980,428
JBrowse link
G Meox1 mesenchyme homeobox 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:1,032,278...1,041,635
Ensembl chrNW_004624795:1,032,546...1,040,007
JBrowse link
G Meox2 mesenchyme homeobox 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624739:14,483,750...14,547,491
Ensembl chrNW_004624739:14,483,789...14,547,374
JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (PMID:23704330) BHF-UCL PMID:23704330 NCBI chrNW_004624734:36,560,486...36,620,043
Ensembl chrNW_004624734:36,560,486...36,620,026
JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:16712836) MGI PMID:16712836 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
G Nup133 nucleoporin 133 acts_upstream_of_or_within ISO (PMID:18539113) MGI PMID:18539113 NCBI chrNW_004624775:19,589,496...19,647,823
Ensembl chrNW_004624775:19,589,372...19,648,884
JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:8681379)
(PMID:11517919)
BHF-UCL PMID:8681379 PMID:11517919 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389
JBrowse link
G Rad51b RAD51 paralog B acts_upstream_of_or_within ISO (PMID:10567591) MGI PMID:10567591 NCBI chrNW_004624734:32,560,579...33,173,357 JBrowse link
G Rbbp6 RB binding protein 6, ubiquitin ligase acts_upstream_of_or_within ISO (PMID:17470788) MGI PMID:17470788 NCBI chrNW_004624782:9,559,333...9,592,648
Ensembl chrNW_004624782:9,558,768...9,594,961
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921
JBrowse link
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO (PMID:25813538) MGI PMID:25813538 NCBI chrNW_004624817:931,686...952,474
Ensembl chrNW_004624817:932,970...952,326
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:25813538) MGI PMID:25813538 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (PMID:16368929) MGI PMID:16368929 NCBI chrNW_004624860:4,968,624...4,970,362 JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (PMID:22949634) MGI PMID:22949634 NCBI chrNW_004624887:1,065,173...1,279,660
Ensembl chrNW_004624887:1,065,883...1,279,186
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20346937) TreeGrafter
MGI
PMID:20346937 GO_REF:0000118 NCBI chrNW_004624768:16,832,008...16,834,697
Ensembl chrNW_004624768:16,830,795...16,834,798
JBrowse link
G Nrarp NOTCH regulated ankyrin repeat protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:670,796...672,679
Ensembl chrNW_004624760:670,837...671,181
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO (PMID:20346937) MGI PMID:20346937 NCBI chrNW_004624803:9,868,707...9,879,909 JBrowse link
G Ripply2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within
ISO (PMID:16326386)
(PMID:20346937)
UniProt
MGI
PMID:16326386 PMID:20346937 NCBI chrNW_004624799:10,750,928...10,755,797 JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325
JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:13,169,096...13,174,498
Ensembl chrNW_004624782:13,169,719...13,174,056
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955
JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein involved_in ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chrNW_004624740:3,332,977...3,399,915 JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:14960495) MGI PMID:14960495 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404
JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO (PMID:12925591) MGI PMID:12925591 NCBI chrNW_004624795:1,032,278...1,041,635
Ensembl chrNW_004624795:1,032,546...1,040,007
JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within ISO (PMID:12925591) MGI PMID:12925591 NCBI chrNW_004624739:14,483,750...14,547,491
Ensembl chrNW_004624739:14,483,789...14,547,374
JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl interactor 1 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624796:2,312,005...2,431,284 JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:15872003) MGI PMID:15872003 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479
JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:16687486) MGI PMID:16687486 NCBI chrNW_004624784:2,933,172...3,080,131
Ensembl chrNW_004624784:2,937,499...3,078,216
JBrowse link
G Axin2 axin 2 acts_upstream_of_or_within ISO (PMID:12636920) MGI PMID:12636920 NCBI chrNW_004624870:2,803,743...2,832,489
Ensembl chrNW_004624870:2,800,873...2,832,626
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:16943278) MGI PMID:16943278 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397
JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:22072575) UniProt PMID:22072575 NCBI chrNW_004624760:11,576,683...11,598,354
Ensembl chrNW_004624760:11,579,163...11,598,287
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982
JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within
involved_in
ISO (PMID:15902259)
(PMID:23072809)
MGI
UniProt
PMID:15902259 PMID:23072809 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404
JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO (PMID:9272948)
(PMID:15170697)
MGI PMID:9272948 PMID:15170697 NCBI chrNW_004624794:12,806,299...12,816,048
Ensembl chrNW_004624794:12,806,868...12,815,582
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244
JBrowse link
G Foxb1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:12,182,728...12,185,228
Ensembl chrNW_004624781:12,183,444...12,185,185
JBrowse link
G Foxc1 forkhead box C1 involved_in ISO (PMID:11562355) UniProt PMID:11562355 NCBI chrNW_004624756:23,060,065...23,062,407
Ensembl chrNW_004624756:23,060,751...23,062,343
JBrowse link
G Foxc2 forkhead box C2 involved_in ISO (PMID:11562355) UniProt PMID:11562355 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11124112) MGI PMID:11124112 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO (PMID:15170214)
(PMID:11641270), (PMID:19779553)
MGI PMID:11641270 PMID:15170214 PMID:19779553 NCBI chrNW_004624786:10,692,329...10,699,346
Ensembl chrNW_004624786:10,692,329...10,695,132
JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO (PMID:17325035)
(PMID:15937931)
MGI PMID:15937931 PMID:17325035 NCBI chrNW_004624795:1,782,367...1,787,408
Ensembl chrNW_004624795:1,782,366...1,788,951
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:15545629)
(PMID:10090727)
MGI PMID:10090727 PMID:15545629 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
ISO (PMID:23072809)
(PMID:18234727)
UniProt
MGI
PMID:18234727 PMID:23072809 NCBI chrNW_004624740:30,392,342...30,404,003
Ensembl chrNW_004624740:30,392,079...30,404,068
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512)
(PMID:15469977)
MGI PMID:15469977 PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20589884) MGI PMID:20589884 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:15902259) MGI PMID:15902259 NCBI chrNW_004624768:16,832,008...16,834,697
Ensembl chrNW_004624768:16,830,795...16,834,798
JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:16000382) MGI PMID:16000382 NCBI chrNW_004624770:9,936,202...10,051,018
Ensembl chrNW_004624770:9,941,706...10,051,024
JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624738:756,679...757,278
Ensembl chrNW_004624738:756,679...757,258
JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624837:33,735...36,052
Ensembl chrNW_004624837:33,864...35,837
JBrowse link
G Myf6 myogenic factor 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624837:24,711...29,217
Ensembl chrNW_004624837:24,775...25,973
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538
JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO (PMID:9621431) BHF-UCL PMID:9621431 NCBI chrNW_004624758:18,874,399...18,876,982
Ensembl chrNW_004624758:18,875,475...18,876,971
JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO (PMID:24875805) MGI PMID:24875805 NCBI chrNW_004624875:2,997,648...3,006,345
Ensembl chrNW_004624875:2,998,006...3,006,303
JBrowse link
G Nrarp NOTCH regulated ankyrin repeat protein acts_upstream_of_or_within ISO (PMID:21795391) MGI PMID:21795391 NCBI chrNW_004624760:670,796...672,679
Ensembl chrNW_004624760:670,837...671,181
JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO (PMID:20484223) MGI PMID:20484223 NCBI chrNW_004624782:8,752,510...8,780,972
Ensembl chrNW_004624782:8,751,866...8,780,884
JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO (PMID:16093716) MGI PMID:16093716 NCBI chrNW_004624741:22,009,733...22,017,377
Ensembl chrNW_004624741:22,007,778...22,017,325
JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within ISO (PMID:12591245) MGI PMID:12591245 NCBI chrNW_004624748:14,285,553...14,290,236
Ensembl chrNW_004624748:14,285,475...14,290,166
JBrowse link
G Plxna2 plexin A2 involved_in ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004624807:3,643,283...3,829,817
Ensembl chrNW_004624807:3,643,255...3,834,128
JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within ISO (PMID:12697902) MGI PMID:12697902 NCBI chrNW_004624741:338,028...364,414
Ensembl chrNW_004624741:337,148...364,301
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within ISO (PMID:9636176) MGI PMID:9636176 NCBI chrNW_004624731:28,682,594...28,701,841
Ensembl chrNW_004624731:28,682,636...28,702,806
JBrowse link
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004624730:12,384,691...12,568,115
Ensembl chrNW_004624730:12,429,902...12,567,683
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO (PMID:16687486) MGI PMID:16687486 NCBI chrNW_004624735:7,534,483...7,702,079
Ensembl chrNW_004624735:7,534,506...7,700,305
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:9153393)
(PMID:10557208), (PMID:19779553)
MGI PMID:9153393 PMID:10557208 PMID:19779553 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743
JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208), (PMID:19779553) MGI PMID:10557208 PMID:19779553 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO (PMID:19779553) MGI PMID:19779553 NCBI chrNW_004624755:6,176,497...6,298,034
Ensembl chrNW_004624755:6,176,497...6,298,225
JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in
ISO (PMID:17531978)
(PMID:16326386)
MGI
UniProt
PMID:16326386 PMID:17531978 NCBI chrNW_004624799:10,750,928...10,755,797 JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chrNW_004624868:479,303...732,723
Ensembl chrNW_004624868:479,290...731,650
JBrowse link
G Sema3c semaphorin 3C involved_in ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004624739:29,484,557...29,642,981
Ensembl chrNW_004624739:29,484,461...29,626,619
JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within
involved_in
ISO (PMID:16467359)
(PMID:18257070)
(PMID:10654605)
MGI
BHF-UCL
PMID:10654605 PMID:16467359 PMID:18257070 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:28893950) MGI PMID:28893950 NCBI chrNW_004624817:8,103,065...8,104,435
Ensembl chrNW_004624817:8,103,065...8,104,420
JBrowse link
G Tbx18 T-box transcription factor 18 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15155583) TreeGrafter
MGI
PMID:15155583 GO_REF:0000118 NCBI chrNW_004624799:9,694,167...9,721,468
Ensembl chrNW_004624799:9,694,374...9,719,385
JBrowse link
G Tbxt T-box transcription factor T involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8293872)
(PMID:15384171)
(PMID:16835439)
TreeGrafter
MGI
PMID:8293872 PMID:15384171 PMID:16835439 GO_REF:0000118 NCBI chrNW_004624785:13,058,520...13,066,607
Ensembl chrNW_004624785:13,058,444...13,066,719
JBrowse link
G Tcap titin-cap involved_in ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chrNW_004624795:3,411,744...3,414,229
Ensembl chrNW_004624795:3,410,951...3,413,052
JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO (PMID:8955271) MGI PMID:8955271 NCBI chrNW_004624741:1,689,397...1,694,934
Ensembl chrNW_004624741:1,689,431...1,694,815
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:17320900) MGI PMID:17320900 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218
JBrowse link
G Ttn titin involved_in ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chrNW_004624844:484,593...760,155 JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:12636920)
(PMID:16291790), (PMID:8299937)
MGI PMID:8299937 PMID:12636920 PMID:16291790 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624800:4,352,566...4,389,707
Ensembl chrNW_004624800:4,355,539...4,390,016
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:16157277), (PMID:16598713) MGI PMID:16157277 PMID:16598713 NCBI chrNW_004624732:44,097,348...44,226,701
Ensembl chrNW_004624732:44,101,613...44,139,997
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:16790474) UniProt PMID:16790474 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (PMID:15821257) UniProt PMID:15821257 NCBI chrNW_004624818:7,516,279...7,517,654
Ensembl chrNW_004624818:7,516,189...7,518,734
JBrowse link
G Irx1 iroquois homeobox 1 involved_in ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004624751:2,005,849...2,014,775
Ensembl chrNW_004624751:2,010,004...2,014,721
JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004624751:1,453,390...1,457,500
Ensembl chrNW_004624751:1,453,390...1,457,470
JBrowse link
G Irx3 iroquois homeobox 3 involved_in ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004624757:2,543,968...2,547,452
Ensembl chrNW_004624757:2,543,992...2,547,464
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:16790474) UniProt PMID:16790474 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441
JBrowse link
spongiotrophoblast cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf2 insulin like growth factor 2 involved_in ISO (PMID:22562201) CACAO PMID:22562201 NCBI chrNW_004624767:14,969,977...14,997,577
Ensembl chrNW_004624767:14,969,866...14,979,026
JBrowse link
spongiotrophoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl2 achaete-scute family bHLH transcription factor 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:15,107,157...15,111,696
Ensembl chrNW_004624767:15,107,159...15,109,191
JBrowse link
G Gjb5 gap junction protein beta 5 acts_upstream_of_or_within ISO (PMID:17961533) MGI PMID:17961533 NCBI chrNW_004624764:17,807,943...17,811,404
Ensembl chrNW_004624764:17,808,161...17,811,372
JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:24855001) MGI PMID:24855001 NCBI chrNW_004624820:1,097,323...1,196,556
Ensembl chrNW_004624820:1,097,463...1,196,499
JBrowse link
G Lif LIF interleukin 6 family cytokine acts_upstream_of_or_within ISO (PMID:16258063) MGI PMID:16258063 NCBI chrNW_004624747:6,558,872...6,565,207
Ensembl chrNW_004624747:6,558,817...6,565,281
JBrowse link
spongiotrophoblast layer development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adm adrenomedullin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:2,402,152...2,404,343
Ensembl chrNW_004624766:2,401,769...2,404,446
JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:15,107,157...15,111,696
Ensembl chrNW_004624767:15,107,159...15,109,191
JBrowse link
G Birc6 baculoviral IAP repeat containing 6 acts_upstream_of_or_within ISO (PMID:15485903) MGI PMID:15485903 NCBI chrNW_004624738:13,990,997...14,246,741
Ensembl chrNW_004624738:13,991,022...14,246,225
JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 acts_upstream_of_or_within ISO (PMID:14673158) MGI PMID:14673158 NCBI chrNW_004624903:2,596,049...2,601,315 JBrowse link
G Fbxw8 F-box and WD repeat domain containing 8 acts_upstream_of_or_within ISO (PMID:16880526) MGI PMID:16880526 NCBI chrNW_004624747:16,226,025...16,343,839
Ensembl chrNW_004624747:16,233,312...16,343,824
JBrowse link
G Senp2 SUMO specific peptidase 2 acts_upstream_of_or_within ISO (PMID:19090619) MGI PMID:19090619 NCBI chrNW_004624730:71,068,112...71,100,121
Ensembl chrNW_004624730:71,068,112...71,100,225
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:32,251,100...32,256,458
Ensembl chrNW_004624734:32,251,114...32,257,211
JBrowse link
spongiotrophoblast layer developmental growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plac1 placenta enriched 1 acts_upstream_of_or_within ISO (PMID:22729990) MGI PMID:22729990 NCBI chrNW_004624797:14,259,180...14,435,455 JBrowse link
syncytiotrophoblast cell differentiation involved in labyrinthine layer development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO (PMID:21972064) MGI PMID:21972064 NCBI chrNW_004624800:1,174,703...1,234,661
Ensembl chrNW_004624800:1,175,679...1,234,951
JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO (PMID:23610556) MGI PMID:23610556 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,497,872...11,499,957
Ensembl chrNW_004624733:11,498,249...11,498,974
JBrowse link
G Tifab TIFA inhibitor involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004624733:11,578,934...11,587,250 JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (PMID:8395349) UniProt PMID:8395349 NCBI chrNW_004624766:20,899,546...20,937,084
Ensembl chrNW_004624766:20,900,676...20,937,202
JBrowse link
trophectodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:9272950) MGI PMID:9272950 NCBI chrNW_004624790:9,809,550...9,829,199
Ensembl chrNW_004624790:9,809,492...9,829,883
JBrowse link
G Bysl bystin like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:17,195,248...17,204,827
Ensembl chrNW_004624754:17,195,251...17,205,198
JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within ISO (PMID:17138661) MGI PMID:17138661 NCBI chrNW_004624746:17,480,472...17,557,722
Ensembl chrNW_004624746:17,483,469...17,557,581
JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within ISO (PMID:16325584), (PMID:25397698)
(PMID:15788452), (PMID:20404091)
(PMID:25397698)
MGI PMID:15788452 PMID:16325584 PMID:20404091 PMID:25397698 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845
JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:16579983) MGI PMID:16579983 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536
JBrowse link
G Cnot1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:22367759) UniProt PMID:22367759 NCBI chrNW_004624746:27,659,424...27,757,024
Ensembl chrNW_004624746:27,676,325...27,756,754
JBrowse link
G Cnot2 CCR4-NOT transcription complex subunit 2 involved_in ISO (PMID:22367759) UniProt PMID:22367759 NCBI chrNW_004624750:27,433,671...27,529,545
Ensembl chrNW_004624750:27,430,575...27,529,081
JBrowse link
G Cnot3 CCR4-NOT transcription complex subunit 3 involved_in ISO (PMID:22367759) UniProt PMID:22367759 NCBI chrNW_004624832:2,429,809...2,441,886
Ensembl chrNW_004624832:2,429,809...2,441,869
JBrowse link
G Ctr9 CTR9 component of Paf1/RNA polymerase II complex acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:2,823,561...2,851,742
Ensembl chrNW_004624766:2,823,229...2,851,742
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO (PMID:16325584) MGI PMID:16325584 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 involved_in ISO (PMID:11802795) BHF-UCL PMID:11802795 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759
JBrowse link
G Hopx HOP homeobox acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:17576768) MGI
UniProt
PMID:17576768 GO_REF:0000117 NCBI chrNW_004624761:12,776,215...12,806,879
Ensembl chrNW_004624761:12,776,137...12,807,042
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO (PMID:11456449)
(PMID:10022836)
MGI PMID:10022836 PMID:11456449 NCBI chrNW_004624901:402,969...404,741
Ensembl chrNW_004624901:403,235...404,269
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11456449) MGI PMID:11456449 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:16325584) MGI PMID:16325584 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
G Rbm46 RNA binding motif protein 46 acts_upstream_of_or_within ISO (PMID:25397698) MGI PMID:25397698 NCBI chrNW_004624848:3,482,539...3,532,577 JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of ISO (PMID:17507372) MGI PMID:17507372 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624904:1,475,664...1,507,588 JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004624787:11,144,581...11,193,520 JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:17576768) MGI PMID:17576768 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
G Tfap2c transcription factor AP-2 gamma involved_in
acts_upstream_of_or_within
ISO (PMID:38243114)
(PMID:20404091)
UniProt
MGI
PMID:20404091 PMID:38243114 NCBI chrNW_004624741:23,286,526...23,299,318
Ensembl chrNW_004624741:23,290,519...23,298,121
JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of ISO (PMID:26902285) MGI PMID:26902285 NCBI chrNW_004624878:621,214...776,363 JBrowse link
trophectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
G Tead4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO (PMID:18083014) MGI PMID:18083014 NCBI chrNW_004624860:314,404...368,212
Ensembl chrNW_004624860:297,601...368,274
JBrowse link
trophectodermal cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1c activin A receptor type 1C acts_upstream_of_or_within ISO (PMID:15150278) MGI PMID:15150278 NCBI chrNW_004624732:8,130,970...8,247,528
Ensembl chrNW_004624732:8,130,962...8,247,289
JBrowse link
G Cops2 COP9 signalosome subunit 2 acts_upstream_of_or_within ISO (PMID:12972599) MGI PMID:12972599 NCBI chrNW_004624731:10,652,556...10,679,481
Ensembl chrNW_004624731:10,652,628...10,678,353
JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:20708584) MGI PMID:20708584 NCBI chrNW_004624734:7,604,049...7,681,481
Ensembl chrNW_004624734:7,608,273...7,651,819
JBrowse link
G Esrrb estrogen related receptor beta acts_upstream_of_or_within ISO (PMID:9285590) MGI PMID:9285590 NCBI chrNW_004624734:25,261,493...25,369,092
Ensembl chrNW_004624734:25,261,493...25,430,045
JBrowse link
G Grn granulin precursor acts_upstream_of ISO (PMID:15901638) MGI PMID:15901638 NCBI chrNW_004624795:704,066...708,721
Ensembl chrNW_004624795:704,252...707,165
JBrowse link
G Zpr1 ZPR1 zinc finger involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:12,202,519...12,212,257
Ensembl chrNW_004624784:12,202,519...12,213,120
JBrowse link
trophectodermal cellular morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727
JBrowse link
G Esrrb estrogen related receptor beta acts_upstream_of_or_within ISO (PMID:9285590) MGI PMID:9285590 NCBI chrNW_004624734:25,261,493...25,369,092
Ensembl chrNW_004624734:25,261,493...25,430,045
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11456449) MGI PMID:11456449 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
trophoblast giant cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2f7 E2F transcription factor 7 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624750:21,010,347...21,063,655
Ensembl chrNW_004624750:21,010,339...21,063,757
JBrowse link
G E2f8 E2F transcription factor 8 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624766:10,652,749...10,670,886
Ensembl chrNW_004624766:10,652,745...10,669,909
JBrowse link
G Elf5 E74 like ETS transcription factor 5 acts_upstream_of ISO (PMID:24859262) MGI PMID:24859262 NCBI chrNW_004624767:12,648,420...12,675,727
Ensembl chrNW_004624767:12,649,643...12,675,711
JBrowse link
G Erf ETS2 repressor factor acts_upstream_of_or_within ISO (PMID:17502352) MGI PMID:17502352 NCBI chrNW_004624907:499,913...506,719
Ensembl chrNW_004624907:499,883...507,629
JBrowse link
G Gjb5 gap junction protein beta 5 acts_upstream_of_or_within ISO (PMID:24866916) MGI PMID:24866916 NCBI chrNW_004624764:17,807,943...17,811,404
Ensembl chrNW_004624764:17,808,161...17,811,372
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within
ISO (PMID:10611232), (PMID:16759287), (PMID:17891141)
(PMID:23911935)
UniProt
MGI
PMID:10611232 PMID:16759287 PMID:17891141 PMID:23911935 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759
JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:24855001) MGI PMID:24855001 NCBI chrNW_004624820:1,097,323...1,196,556
Ensembl chrNW_004624820:1,097,463...1,196,499
JBrowse link
G Lif LIF interleukin 6 family cytokine acts_upstream_of_or_within ISO (PMID:16258063) MGI PMID:16258063 NCBI chrNW_004624747:6,558,872...6,565,207
Ensembl chrNW_004624747:6,558,817...6,565,281
JBrowse link
G Mdfi MyoD family inhibitor acts_upstream_of_or_within ISO (PMID:9799236) MGI PMID:9799236 NCBI chrNW_004624754:17,377,369...17,389,349
Ensembl chrNW_004624754:17,375,714...17,387,919
JBrowse link
G Nr2f2 nuclear receptor subfamily 2 group F member 2 acts_upstream_of_or_within ISO (PMID:17404209) MGI PMID:17404209 NCBI chrNW_004624768:7,713,771...7,728,102
Ensembl chrNW_004624768:7,701,674...7,728,408
JBrowse link
G Palld palladin, cytoskeletal associated protein ISO RGD PMID:16481593 RGD:2325785 NCBI chrNW_004624769:150,800...560,163
Ensembl chrNW_004624769:150,738...559,045
JBrowse link
G Plg plasminogen acts_upstream_of_or_within ISO (PMID:12900459) MGI PMID:12900459 NCBI chrNW_004624855:2,362,793...2,401,519
Ensembl chrNW_004624855:2,360,229...2,402,079
JBrowse link
G Plk4 polo like kinase 4 involved_in ISO (PMID:17891141) UniProt PMID:17891141 NCBI chrNW_004624777:8,804,372...8,825,669
Ensembl chrNW_004624777:8,804,593...8,825,257
JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:16,205,056...16,227,382
Ensembl chrNW_004624780:16,204,838...16,227,390
JBrowse link
G Senp2 SUMO specific peptidase 2 acts_upstream_of_or_within ISO (PMID:19090619) MGI PMID:19090619 NCBI chrNW_004624730:71,068,112...71,100,121
Ensembl chrNW_004624730:71,068,112...71,100,225
JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO (PMID:9676199) MGI PMID:9676199 NCBI chrNW_004624790:5,509,541...5,515,240
Ensembl chrNW_004624790:5,509,311...5,515,266
JBrowse link
G Sox15 SRY-box transcription factor 15 involved_in ISO (PMID:16759287) UniProt PMID:16759287 NCBI chrNW_004624786:10,202,988...10,204,808
Ensembl chrNW_004624786:10,202,988...10,204,358
JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO (PMID:16316641) MGI PMID:16316641 NCBI chrNW_004624741:28,156,956...28,217,133
Ensembl chrNW_004624741:28,157,172...28,217,113
JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624765:10,372,172...10,484,766
Ensembl chrNW_004624765:10,372,099...10,484,963
JBrowse link
G Sema3f semaphorin 3F acts_upstream_of_or_within ISO (PMID:16319111) MGI PMID:16319111 NCBI chrNW_004624730:4,035,909...4,064,796
Ensembl chrNW_004624730:4,035,874...4,065,667
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of ISO (PMID:15337776) MGI PMID:15337776 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624775:2,985,077...3,014,567
Ensembl chrNW_004624775:2,994,164...3,015,392
JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (PMID:8657307) UniProt PMID:8657307 NCBI chrNW_004624759:17,263,570...17,290,046
Ensembl chrNW_004624759:17,263,969...17,287,723
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624804:1,606,182...1,620,932
Ensembl chrNW_004624804:1,608,757...1,620,938
JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 acts_upstream_of_or_within ISO (PMID:9637690) MGI PMID:9637690 NCBI chrNW_004624742:10,472,607...10,695,939
Ensembl chrNW_004624742:10,475,748...10,695,525
JBrowse link
G Nog noggin involved_in ISO (PMID:17522159) UniProt PMID:17522159 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (PMID:19386662) ParkinsonsUK-UCL PMID:19386662 NCBI chrNW_004624805:8,438,485...8,574,845
Ensembl chrNW_004624805:8,438,498...8,574,508
JBrowse link
G Nrp2 neuropilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624765:10,372,172...10,484,766
Ensembl chrNW_004624765:10,372,099...10,484,963
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:19386662) ParkinsonsUK-UCL PMID:19386662 NCBI chrNW_004624739:32,104,014...32,426,980
Ensembl chrNW_004624739:32,105,824...32,309,271
JBrowse link
G Sema3f semaphorin 3F involved_in ISO (PMID:19386662) ParkinsonsUK-UCL PMID:19386662 NCBI chrNW_004624730:4,035,909...4,064,796
Ensembl chrNW_004624730:4,035,874...4,065,667
JBrowse link
vestibular receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptprq protein tyrosine phosphatase receptor type Q acts_upstream_of_or_within ISO (PMID:22357859) MGI PMID:22357859 NCBI chrNW_004624750:17,621,520...17,863,902
Ensembl chrNW_004624750:17,622,627...17,863,899
JBrowse link
vestibular receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pls1 plastin 1 involved_in ISO (PMID:25124451) UniProt PMID:25124451 NCBI chrNW_004624730:19,164,360...19,302,369
Ensembl chrNW_004624730:19,163,783...19,302,222
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15469977) MGI PMID:15469977 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893
JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591
JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule ISO RGD PMID:25281935 RGD:12832757 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO (PMID:10809672) MGI PMID:10809672 NCBI chrNW_004624768:3,336,374...3,517,697
Ensembl chrNW_004624768:3,331,207...3,516,394
JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078
JBrowse link
G Smad6 SMAD family member 6 involved_in ISO (PMID:9436979) BHF-UCL PMID:9436979 NCBI chrNW_004624781:6,043,183...6,108,959
Ensembl chrNW_004624781:6,042,904...6,107,860
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17794
    multicellular organismal process 7814
      multicellular organism development 4886
        embryo development 1267
          embryo development ending in birth or egg hatching + 843
          embryo development ending in seed dormancy + 0
          embryonic cleavage 11
          embryonic morphogenesis + 672
          embryonic organ development + 528
          embryonic pattern specification + 70
          mitotic cell cycle, embryonic + 5
          morula development 0
          negative regulation of embryonic development + 2
          positive regulation of embryonic development + 20
          pseudocleavage + 0
          regulation of embryonic development + 79
          somite development + 92
          syncytial embryo cellularization 0
Path 2
Term Annotations click to browse term
  biological_process 17794
    developmental process 6537
      anatomical structure development 6086
        multicellular organism development 4886
          embryo development 1267
            embryo development ending in birth or egg hatching + 843
            embryo development ending in seed dormancy + 0
            embryonic cleavage 11
            embryonic morphogenesis + 672
            embryonic organ development + 528
            embryonic pattern specification + 70
            mitotic cell cycle, embryonic + 5
            morula development 0
            negative regulation of embryonic development + 2
            positive regulation of embryonic development + 20
            pseudocleavage + 0
            regulation of embryonic development + 79
            somite development + 92
            syncytial embryo cellularization 0
paths to the root