Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:embryo development
go back to main search page
Accession:GO:0009790 term browser browse the term
Definition:The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
Synonyms:exact_synonym: embryogenesis;   embryonal development
 broad_synonym: embryogenesis and morphogenesis
 alt_id: GO:0009795
 xref: Wikipedia:Embryogenesis


show annotations for term's descendants           Sort by:
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 acts_upstream_of_or_within IMP (PMID:21515572) MGI PMID:21515572 NCBI chr 8:47,070,326...47,092,733
Ensembl chr 8:47,070,326...47,092,724 		JBrowse link
G Folr1 folate receptor alpha involved_in IMP (MGI:3721767|PMID:17286298)
(PMID:17286298)		 BHF-UCL PMID:17286298 MGI:3721767 NCBI chr 7:101,507,551...101,519,974
Ensembl chr 7:101,507,538...101,519,995 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within IMP (PMID:21515572) MGI PMID:21515572 NCBI chr15:37,233,065...37,363,813
Ensembl chr15:37,233,280...37,363,813 		JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like acts_upstream_of_or_within IMP (PMID:26787558) MGI PMID:26787558 NCBI chr10:75,047,872...75,148,234
Ensembl chr10:75,047,905...75,148,577 		JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within IMP (PMID:17565372) MGI PMID:17565372 NCBI chr 8:70,359,719...70,450,093
Ensembl chr 8:70,359,726...70,449,034 		JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (PMID:8622765) MGI PMID:8622765 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within IMP (PMID:9790191) MGI PMID:9790191 NCBI chr 9:110,768,676...110,775,226
Ensembl chr 9:110,768,671...110,775,226 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IMP (PMID:15870281) MGI PMID:15870281 NCBI chr10:116,905,324...116,986,311
Ensembl chr10:116,905,332...116,984,439 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Tasor transcription activation suppressor involved_in IMP (MGI:6109647|PMID:28839193)
(PMID:28839193)		 UniProt PMID:28839193 MGI:6109647 NCBI chr14:27,150,759...27,205,512
Ensembl chr14:27,150,791...27,205,512 		JBrowse link
G Tbx3 T-box 3 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 5:119,808,600...119,822,789
Ensembl chr 5:119,808,734...119,822,789 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 (T cell specific, HMG box) acts_upstream_of_or_within IMP (PMID:14668413) MGI PMID:14668413 NCBI chr 6:72,603,354...72,766,028
Ensembl chr 6:72,603,361...72,766,237 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A involved_in IDA (MGI:4835157|PMID:9054360)
(PMID:9054360)		 BHF-UCL PMID:9054360 MGI:4835157 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2-associated X protein acts_upstream_of_or_within IGI (PMID:15967824) MGI PMID:15967824 NCBI chr 7:45,111,124...45,116,332
Ensembl chr 7:45,111,121...45,116,322 		JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within IGI (PMID:15967824) MGI PMID:15967824 NCBI chr 2:127,967,958...128,004,467
Ensembl chr 2:127,967,958...128,004,467 		JBrowse link
G Notch1 notch 1 acts_upstream_of_or_within IMP (PMID:16245338) MGI PMID:16245338 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir96 microRNA 96 acts_upstream_of_or_within IMP (PMID:19363478) MGI PMID:19363478 NCBI chr 6:30,169,445...30,169,550
Ensembl chr 6:30,169,445...30,169,550 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within IMP (PMID:20016102) MGI PMID:20016102 NCBI chr 5:143,491,236...143,513,786
Ensembl chr 5:143,489,389...143,513,791 		JBrowse link
G Scrib scribbled planar cell polarity acts_upstream_of_or_within IGI (PMID:20215345) MGI PMID:20215345 NCBI chr15:75,919,011...75,941,633
Ensembl chr15:75,919,007...75,941,633 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within IMP
IGI		 (PMID:20215345) MGI PMID:20215345 NCBI chr 3:129,776,408...129,855,248
Ensembl chr 3:129,776,408...129,855,202 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within IMP (PMID:19936227) MGI PMID:19936227 NCBI chr14:110,984,770...110,992,640
Ensembl chr14:110,986,012...110,992,581 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:45,844,774...45,887,984
Ensembl chr 7:45,844,774...45,887,927 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within IMP (PMID:24302887) MGI PMID:24302887 NCBI chr11:21,521,969...21,848,686
Ensembl chr11:21,522,235...21,848,989 		JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd24 ankyrin repeat domain 24 involved_in IMP (MGI:6885507|PMID:35175278)
(PMID:35175278)		 UniProt PMID:35175278 MGI:6885507 NCBI chr10:81,464,352...81,483,446
Ensembl chr10:81,464,374...81,483,444 		JBrowse link
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 acts_upstream_of_or_within IMP (PMID:11875276) MGI PMID:11875276 NCBI chr 6:113,720,803...114,019,574
Ensembl chr 6:113,720,792...114,019,574 		JBrowse link
G Cdh23 cadherin related 23 (otocadherin) acts_upstream_of_or_within IMP
IGI		 (PMID:7610888), (PMID:8790740), (PMID:9039475)
(PMID:12121736)
(PMID:11138008), (PMID:17050716), (PMID:23217710)
(PMID:11322776)
(PMID:15537665)		 MGI PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... NCBI chr10:60,138,527...60,532,291
Ensembl chr10:60,138,527...60,532,269 		JBrowse link
G Clic5 chloride intracellular channel 5 acts_upstream_of_or_within IMP (PMID:17021174) MGI PMID:17021174 NCBI chr17:44,445,671...44,591,059
Ensembl chr17:44,445,659...44,591,059 		JBrowse link
G Clrn1 clarin 1 acts_upstream_of_or_within IMP (PMID:19414487), (PMID:19423712) MGI PMID:19414487 PMID:19423712 NCBI chr 3:58,751,449...58,792,633
Ensembl chr 3:58,751,449...58,792,761 		JBrowse link
G Clrn2 clarin 2 involved_in IMP (MGI:6810803|PMID:33496845) UniProt PMID:33496845 MGI:6810803 NCBI chr 5:45,611,021...45,621,824
Ensembl chr 5:45,611,093...45,621,491 		JBrowse link
G Grxcr2 glutaredoxin, cysteine rich 2 acts_upstream_of_or_within IMP
IGI		 (PMID:30380417) MGI PMID:30380417 NCBI chr18:42,118,388...42,132,114
Ensembl chr18:42,118,388...42,132,114 		JBrowse link
G Lhfpl5 lipoma HMGIC fusion partner-like 5 acts_upstream_of_or_within IMP (PMID:15905332)
(PMID:17876667), (PMID:23217710)		 MGI PMID:15905332 PMID:17876667 PMID:23217710 NCBI chr17:28,794,330...28,802,567
Ensembl chr17:28,794,615...28,804,653 		JBrowse link
G Myo3a myosin IIIA involved_in IGI
IMP		 (PMID:26754646) MGI PMID:26754646 NCBI chr 2:22,232,360...22,508,693
Ensembl chr 2:22,232,316...22,508,264 		JBrowse link
G Myo3b myosin IIIB involved_in IGI
IMP		 (PMID:26754646) MGI PMID:26754646 NCBI chr 2:69,869,464...70,259,542
Ensembl chr 2:69,869,470...70,259,542 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within IMP (PMID:17050716)
(PMID:11753415)
(PMID:12121736)		 MGI PMID:11753415 PMID:12121736 PMID:17050716 NCBI chr 7:97,700,261...97,768,730
Ensembl chr 7:97,700,267...97,768,731 		JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 acts_upstream_of_or_within IMP (PMID:24920589) MGI PMID:24920589 NCBI chr11:115,054,138...115,072,009
Ensembl chr11:115,054,167...115,072,007 		JBrowse link
G Pcdh15 protocadherin 15 acts_upstream_of_or_within IGI
IMP		 (PMID:15537665)
(PMID:10978835)
(PMID:23217710)
(PMID:11124469)
(PMID:16887306)		 MGI PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 NCBI chr10:72,932,003...74,485,663
Ensembl chr10:72,935,174...74,485,569 		JBrowse link
G Pdzd7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:24334608) GO_Central
MGI		 PMID:24334608 GO_REF:0000033 NCBI chr19:45,015,346...45,048,273
Ensembl chr19:45,015,345...45,034,156 		JBrowse link
G Pls1 plastin 1 (I-isoform) involved_in IMP (MGI:5608770|PMID:25124451)
(PMID:25124451)		 UniProt PMID:25124451 MGI:5608770 NCBI chr 9:95,634,695...95,727,359
Ensembl chr 9:95,634,695...95,727,364 		JBrowse link
G Rest RE1-silencing transcription factor involved_in IMP (MGI:6193260|PMID:29961578)
(PMID:29961578)		 UniProt PMID:29961578 MGI:6193260 NCBI chr 5:77,413,273...77,434,279
Ensembl chr 5:77,413,338...77,434,279 		JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in IMP (MGI:5789047|PMID:27269051)
(PMID:27269051)		 UniProt PMID:27269051 MGI:5789047 NCBI chr13:24,685,513...24,917,789
Ensembl chr13:24,685,508...24,917,799 		JBrowse link
G Scrib scribbled planar cell polarity acts_upstream_of_or_within IGI (PMID:20215345) MGI PMID:20215345 NCBI chr15:75,919,011...75,941,633
Ensembl chr15:75,919,007...75,941,633 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within IMP
IGI		 (PMID:20215345) MGI PMID:20215345 NCBI chr 3:129,776,408...129,855,248
Ensembl chr 3:129,776,408...129,855,202 		JBrowse link
G Sod1 superoxide dismutase 1, soluble acts_upstream_of_or_within IMP (PMID:10464373), (PMID:10466888) MGI PMID:10464373 PMID:10466888 NCBI chr16:90,017,650...90,023,221
Ensembl chr16:90,017,642...90,023,217 		JBrowse link
G Strc stereocilin involved_in
acts_upstream_of_or_within		 IMP
IGI		 (MGI:5430850|PMID:21165971)
(PMID:21165971)
(PMID:30801007)
(PMID:18849963)		 UniProt
MGI		 PMID:18849963 PMID:21165971 PMID:30801007 MGI:5430850 NCBI chr 2:121,193,729...121,211,851
Ensembl chr 2:121,194,209...121,217,649 		JBrowse link
G Tecta tectorin alpha acts_upstream_of_or_within IGI (PMID:30801007) MGI PMID:30801007 NCBI chr 9:42,240,918...42,312,986
Ensembl chr 9:42,240,915...42,311,225 		JBrowse link
G Tprn taperin involved_in
acts_upstream_of_or_within		 IBA
IGI		 (PMID:30380417) GO_Central
MGI		 PMID:30380417 GO_REF:0000033 NCBI chr 2:25,152,610...25,159,898
Ensembl chr 2:25,152,630...25,159,897 		JBrowse link
G Triobp TRIO and F-actin binding protein acts_upstream_of_or_within IMP (PMID:20510926) MGI PMID:20510926 NCBI chr15:78,831,924...78,890,069
Ensembl chr15:78,831,924...78,890,069 		JBrowse link
G Whrn whirlin involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:27117407) GO_Central
MGI		 PMID:27117407 GO_REF:0000033 NCBI chr 4:63,333,145...63,414,320
Ensembl chr 4:63,333,147...63,414,228 		JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within IMP (PMID:9230313) MGI PMID:9230313 NCBI chr17:26,350,294...26,414,784
Ensembl chr17:26,357,662...26,414,785 		JBrowse link
G Epha2 Eph receptor A2 acts_upstream_of_or_within IMP (PMID:11287184) MGI PMID:11287184 NCBI chr 4:141,028,532...141,056,695
Ensembl chr 4:141,028,551...141,056,695 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IMP (PMID:14511481) MGI PMID:14511481 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IGI (PMID:11029008) MGI PMID:11029008 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within IMP (PMID:20630950) MGI PMID:20630950 NCBI chr  X:100,317,697...100,342,540
Ensembl chr  X:100,317,636...100,341,071 		JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A acts_upstream_of_or_within IGI (PMID:11029008) MGI PMID:11029008 NCBI chr11:59,138,859...59,181,579
Ensembl chr11:59,138,859...59,181,578 		JBrowse link
blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1b1 ATPase, Na+/K+ transporting, beta 1 polypeptide acts_upstream_of_or_within IMP MGI MGI:1888635 NCBI chr 1:164,264,668...164,285,924
Ensembl chr 1:164,264,678...164,285,924 		JBrowse link
G Bnip2 BCL2/adenovirus E1B interacting protein 2 acts_upstream_of_or_within IMP (PMID:19117032) MGI PMID:19117032 NCBI chr 9:69,896,660...69,918,941
Ensembl chr 9:69,896,748...69,915,599 		JBrowse link
G Capn2 calpain 2 acts_upstream_of_or_within IMP (PMID:16433929) MGI PMID:16433929 NCBI chr 1:182,294,818...182,345,175
Ensembl chr 1:182,294,825...182,345,173 		JBrowse link
G Cdk11b cyclin dependent kinase 11B acts_upstream_of_or_within IMP (PMID:15060143) MGI PMID:15060143 NCBI chr 4:155,709,303...155,734,392
Ensembl chr 4:155,709,311...155,734,395 		JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within IMP (PMID:15788452) MGI PMID:15788452 NCBI chr 5:147,237,710...147,244,059
Ensembl chr 5:147,237,615...147,244,080 		JBrowse link
G Dad1 defender against cell death 1 acts_upstream_of_or_within IMP (PMID:10748466) MGI PMID:10748466 NCBI chr14:54,472,942...54,491,386
Ensembl chr14:54,472,936...54,491,561 		JBrowse link
G Dcpp1 demilune cell and parotid protein 1 acts_upstream_of_or_within IDA (PMID:16239302) MGI PMID:16239302 NCBI chr17:24,099,643...24,101,827
Ensembl chr17:24,099,850...24,101,827 		JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 acts_upstream_of_or_within IMP (PMID:15452149) MGI PMID:15452149 NCBI chr 7:130,633,787...130,723,357
Ensembl chr 7:130,633,776...130,723,357 		JBrowse link
G Elf3 E74-like factor 3 acts_upstream_of_or_within IMP (PMID:16630543) MGI PMID:16630543 NCBI chr 1:135,181,312...135,186,210
Ensembl chr 1:135,181,313...135,186,306 		JBrowse link
G Emg1 EMG1 N1-specific pseudouridine methyltransferase acts_upstream_of_or_within IMP (PMID:20858271) MGI PMID:20858271 NCBI chr 6:124,681,344...124,689,118
Ensembl chr 6:124,681,048...124,689,141 		JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within IMP (PMID:15788452) MGI PMID:15788452 NCBI chr 9:118,307,259...118,315,176
Ensembl chr 9:118,307,280...118,315,200 		JBrowse link
G Etv2 ets variant 2 acts_upstream_of_or_within IMP (PMID:16630543) MGI PMID:16630543 NCBI chr 7:30,333,041...30,335,934
Ensembl chr 7:30,333,041...30,335,277 		JBrowse link
G G2e3 G2/M-phase specific E3 ubiquitin ligase acts_upstream_of_or_within IMP (PMID:18511420) MGI PMID:18511420 NCBI chr12:51,395,013...51,423,769
Ensembl chr12:51,394,844...51,423,769 		JBrowse link
G Gdf9 growth differentiation factor 9 involved_in ISO (PMID:24313324) AgBase PMID:24313324 NCBI chr11:53,321,773...53,328,731
Ensembl chr11:53,321,850...53,328,731 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 involved_in ISO (PMID:11802795) BHF-UCL PMID:11802795 NCBI chr11:57,719,539...57,722,973
Ensembl chr11:57,719,531...57,723,644 		JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within IMP (PMID:16880268) MGI PMID:16880268 NCBI chr 5:115,087,039...115,109,121
Ensembl chr 5:115,087,039...115,109,153 		JBrowse link
G Hormad1 HORMA domain containing 1 involved_in IMP (MGI:4868505|PMID:21079677) UniProt PMID:21079677 MGI:4868505 NCBI chr 3:95,466,988...95,495,174
Ensembl chr 3:95,466,988...95,494,982 		JBrowse link
G Kdm4dl lysine (K)-specific demethylase 4D-like acts_upstream_of_or_within IMP (PMID:32461551) MGI PMID:32461551 NCBI chr 9:14,362,311...14,363,318
Ensembl chr 9:14,362,132...14,363,318 		JBrowse link
G Kpna7 karyopherin subunit alpha 7 acts_upstream_of_or_within IMP (PMID:20699224) MGI PMID:20699224 NCBI chr 5:144,920,537...144,946,446
Ensembl chr 5:144,920,329...145,020,840 		JBrowse link
G Med21 mediator complex subunit 21 acts_upstream_of_or_within IMP (PMID:10500093) MGI PMID:10500093 NCBI chr 6:146,544,077...146,552,098
Ensembl chr 6:146,544,045...146,552,230 		JBrowse link
G N4bp2l2 NEDD4 binding protein 2-like 2 acts_upstream_of_or_within IMP (PMID:18360097) MGI PMID:18360097 NCBI chr 5:150,515,310...150,589,213
Ensembl chr 5:150,531,472...150,589,648 		JBrowse link
G Nasp nuclear autoantigenic sperm protein (histone-binding) involved_in IMP (MGI:3694318|PMID:16728391) UniProt PMID:16728391 MGI:3694318 NCBI chr 4:116,458,249...116,488,894
Ensembl chr 4:116,458,249...116,485,138 		JBrowse link
G Nek2 NIMA (never in mitosis gene a)-related expressed kinase 2 acts_upstream_of_or_within IMP (PMID:19117032) MGI PMID:19117032 NCBI chr 1:191,553,622...191,565,161
Ensembl chr 1:191,553,556...191,565,162 		JBrowse link
G Nlrp9a NLR family, pyrin domain containing 9A acts_upstream_of_or_within IGI (PMID:32413845) MGI PMID:32413845 NCBI chr 7:26,234,448...26,273,573
Ensembl chr 7:26,234,448...26,275,040 		JBrowse link
G Nlrp9b NLR family, pyrin domain containing 9B acts_upstream_of_or_within IGI (PMID:32413845) MGI PMID:32413845 NCBI chr 7:19,725,318...19,796,867
Ensembl chr 7:19,725,390...19,807,231 		JBrowse link
G Nlrp9c NLR family, pyrin domain containing 9C acts_upstream_of_or_within IGI (PMID:32413845) MGI PMID:32413845 NCBI chr 7:26,064,116...26,103,125
Ensembl chr 7:26,021,898...26,103,125 		JBrowse link
G Npm2 nucleophosmin/nucleoplasmin 2 involved_in ISO
ISS		 MGI
UniProt		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr14:70,884,736...70,896,694
Ensembl chr14:70,884,742...70,896,684 		JBrowse link
G Oosp1 oocyte secreted protein 1 acts_upstream_of_or_within IGI (PMID:32231122) MGI PMID:32231122 NCBI chr19:11,644,824...11,668,415
Ensembl chr19:11,644,824...11,668,514 		JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 involved_in IEP (MGI:4946964|PMID:21258368)
(PMID:21258368)		 BHF-UCL PMID:21258368 MGI:4946964 NCBI chr17:35,816,929...35,821,674
Ensembl chr17:35,816,915...35,821,669 		JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma acts_upstream_of_or_within IMP (PMID:12606345) MGI PMID:12606345 NCBI chr 5:122,296,338...122,313,336
Ensembl chr 5:122,296,341...122,313,336 		JBrowse link
G Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3 acts_upstream_of_or_within IMP (PMID:10945464) MGI PMID:10945464 NCBI chr 2:90,884,361...90,889,783
Ensembl chr 2:90,884,354...90,896,714 		JBrowse link
G Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4 acts_upstream_of_or_within IMP (PMID:10945464) MGI PMID:10945464 NCBI chr 7:27,741,127...27,749,517
Ensembl chr 7:27,741,132...27,749,526 		JBrowse link
G Rpl13 ribosomal protein L13 acts_upstream_of IMP (PMID:26902285) MGI PMID:26902285 NCBI chr 8:123,829,089...123,831,983
Ensembl chr 8:123,829,089...123,831,983 		JBrowse link
G Rrm2 ribonucleotide reductase M2 acts_upstream_of IMP (PMID:26902285) MGI PMID:26902285 NCBI chr12:24,758,253...24,764,145
Ensembl chr12:24,758,240...24,764,145 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 acts_upstream_of_or_within IMP (PMID:11313485)
(PMID:11263494)		 MGI PMID:11263494 PMID:11313485 NCBI chr10:75,732,603...75,757,448
Ensembl chr10:75,732,603...75,757,451 		JBrowse link
G Specc1 sperm antigen with calponin homology and coiled-coil domains 1 acts_upstream_of_or_within IMP (PMID:34166821) MGI PMID:34166821 NCBI chr11:61,847,589...62,113,839
Ensembl chr11:61,847,589...62,113,839 		JBrowse link
G Spic Spi-C transcription factor (Spi-1/PU.1 related) acts_upstream_of_or_within IMP (PMID:16630543) MGI PMID:16630543 NCBI chr10:88,511,131...88,518,885
Ensembl chr10:88,510,634...88,520,877 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I acts_upstream_of_or_within IDA (PMID:9921650) MGI PMID:9921650 NCBI chr 4:47,353,258...47,414,926
Ensembl chr 4:47,353,222...47,414,931 		JBrowse link
G Tgfbr3 transforming growth factor, beta receptor III acts_upstream_of_or_within IDA (PMID:9921650) MGI PMID:9921650 NCBI chr 5:107,254,433...107,437,495
Ensembl chr 5:107,254,436...107,437,495 		JBrowse link
G Thoc2 THO complex 2 acts_upstream_of_or_within IMP (PMID:24315442) MGI PMID:24315442 NCBI chr  X:40,883,869...41,000,878
Ensembl chr  X:40,883,868...41,009,551 		JBrowse link
G Thoc5 THO complex 5 acts_upstream_of_or_within IMP (PMID:24315442) MGI PMID:24315442 NCBI chr11:4,845,339...4,878,867
Ensembl chr11:4,845,320...4,878,867 		JBrowse link
G Xab2 XPA binding protein 2 acts_upstream_of_or_within IMP (PMID:15725628) MGI PMID:15725628 NCBI chr 8:3,660,089...3,671,311
Ensembl chr 8:3,658,421...3,671,316 		JBrowse link
G Yap1 yes-associated protein 1 acts_upstream_of IMP (PMID:26902285) MGI PMID:26902285 NCBI chr 9:7,932,000...8,004,890
Ensembl chr 9:7,932,000...8,004,597 		JBrowse link
blastocyst formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 3:32,762,695...32,781,122
Ensembl chr 3:32,760,447...32,781,122 		JBrowse link
G Bysl bystin-like acts_upstream_of_or_within IMP (PMID:17242206) MGI PMID:17242206 NCBI chr17:47,910,256...47,922,417
Ensembl chr17:47,910,256...47,922,417 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 acts_upstream_of_or_within IMP (PMID:17784788) MGI PMID:17784788 NCBI chr14:51,026,706...51,033,185
Ensembl chr14:51,026,705...51,045,189 		JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme involved_in IGI (MGI:5702364|PMID:26416966)
(PMID:26416966)		 CACAO PMID:26416966 MGI:5702364 NCBI chr 7:80,038,942...80,055,188
Ensembl chr 7:80,038,333...80,055,184 		JBrowse link
G Gabpa GA repeat binding protein, alpha acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr16:84,631,795...84,660,671
Ensembl chr16:84,631,813...84,660,667 		JBrowse link
G Kdm4c lysine (K)-specific demethylase 4C acts_upstream_of_or_within IMP (PMID:19696013) MGI PMID:19696013 NCBI chr 4:74,160,734...74,324,101
Ensembl chr 4:74,160,734...74,324,097 		JBrowse link
G Matr3 matrin 3 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr18:35,686,462...35,724,526
Ensembl chr18:35,695,191...35,726,888 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within IMP (PMID:16083859) MGI PMID:16083859 NCBI chr 4:147,958,043...147,989,527
Ensembl chr 4:147,958,056...147,989,161 		JBrowse link
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr15:78,640,082...78,657,678
Ensembl chr15:78,640,082...78,657,675 		JBrowse link
G Mxi1 MAX interactor 1, dimerization protein acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr19:53,298,509...53,361,724
Ensembl chr19:53,298,949...53,364,241 		JBrowse link
G Nop2 NOP2 nucleolar protein acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 6:125,108,829...125,121,716
Ensembl chr 6:125,108,872...125,121,716 		JBrowse link
G Pbrm1 polybromo 1 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr14:30,741,095...30,843,549
Ensembl chr14:30,741,095...30,843,549 		JBrowse link
G Pnldc1 poly(A)-specific ribonuclease (PARN)-like domain containing 1 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr17:13,107,610...13,129,489
Ensembl chr17:13,107,616...13,129,117 		JBrowse link
G Pramel7 PRAME like 7 involved_in IMP (MGI:5908741|PMID:28604677) UniProt PMID:28604677 MGI:5908741 NCBI chr 2:87,319,432...87,322,762
Ensembl chr 2:87,319,431...87,327,437 		JBrowse link
G Ptpn18 protein tyrosine phosphatase, non-receptor type 18 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 1:34,498,827...34,514,811
Ensembl chr 1:34,498,843...34,514,814 		JBrowse link
G Rpl7l1 ribosomal protein L7-like 1 acts_upstream_of_or_within IMP (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chr17:47,084,833...47,093,582
Ensembl chr17:47,084,833...47,093,598 		JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A acts_upstream_of_or_within IMP (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chr15:83,000,047...83,007,002
Ensembl chr15:82,997,634...83,007,002 		JBrowse link
G Rtn4 reticulon 4 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr11:29,642,898...29,694,414
Ensembl chr11:29,642,947...29,694,331 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 acts_upstream_of_or_within IMP (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chr 1:55,024,328...55,066,660
Ensembl chr 1:55,024,328...55,066,640 		JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 acts_upstream_of_or_within IMP (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chr12:4,867,608...4,877,659
Ensembl chr12:4,867,544...4,877,659 		JBrowse link
G Skil SKI-like acts_upstream_of_or_within IMP (PMID:10811619) MGI PMID:10811619 NCBI chr 3:31,149,259...31,176,741
Ensembl chr 3:31,149,207...31,176,726 		JBrowse link
G Supt6 SPT6, histone chaperone and transcription elongation factor acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr11:78,097,575...78,136,798
Ensembl chr11:78,097,572...78,136,813 		JBrowse link
G Tead4 TEA domain family member 4 acts_upstream_of_or_within IMP (PMID:18804437) MGI PMID:18804437 NCBI chr 6:128,204,106...128,277,776
Ensembl chr 6:128,201,251...128,277,786 		JBrowse link
G Tjp1 tight junction protein 1 acts_upstream_of_or_within IMP (PMID:18423437) MGI PMID:18423437 NCBI chr 7:64,945,913...65,177,629
Ensembl chr 7:64,945,913...65,177,529 		JBrowse link
G Tm4sf1 transmembrane 4 superfamily member 1 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 3:57,193,038...57,295,150
Ensembl chr 3:57,193,032...57,209,409
Ensembl chr 3:57,193,032...57,209,409 		JBrowse link
G Txnrd3 thioredoxin reductase 3 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 6:89,620,970...89,652,511
Ensembl chr 6:89,620,970...89,652,511 		JBrowse link
G Uspl1 ubiquitin specific peptidase like 1 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 5:149,121,338...149,152,246
Ensembl chr 5:149,121,160...149,152,244 		JBrowse link
G Wdr74 WD repeat domain 74 acts_upstream_of_or_within IMP (PMID:21799883), (PMID:27869233) MGI PMID:21799883 PMID:27869233 NCBI chr19:8,713,159...8,717,988
Ensembl chr19:8,713,191...8,717,988 		JBrowse link
G Zp3 zona pellucida glycoprotein 3 involved_in IMP (MGI:4943828|PMID:20382503) UniProt PMID:20382503 MGI:4943828 NCBI chr 5:136,008,959...136,017,478
Ensembl chr 5:136,008,953...136,017,478 		JBrowse link
blastocyst growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within IMP
IGI		 (PMID:24036311) MGI PMID:24036311 NCBI chr 7:110,628,158...110,655,584
Ensembl chr 7:110,628,158...110,655,584 		JBrowse link
G Hbegf heparin-binding EGF-like growth factor involved_in TAS (MGI:1333098|PMID:10101133)
(PMID:10101133)		 UniProt PMID:10101133 MGI:1333098 NCBI chr18:36,637,980...36,648,858
Ensembl chr18:36,637,980...36,648,858 		JBrowse link
G Ints1 integrator complex subunit 1 acts_upstream_of_or_within IMP (PMID:17544522) MGI PMID:17544522 NCBI chr 5:139,737,037...139,761,455
Ensembl chr 5:139,737,037...139,761,429 		JBrowse link
G Nbn nibrin involved_in IMP (MGI:2680772|PMID:14612522)
(PMID:14612522)		 UniProt PMID:14612522 MGI:2680772 NCBI chr 4:15,955,388...15,992,589
Ensembl chr 4:15,957,925...15,992,589 		JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 acts_upstream_of_or_within IGI (PMID:24036311) MGI PMID:24036311 NCBI chr17:35,816,929...35,821,674
Ensembl chr17:35,816,915...35,821,669 		JBrowse link
G Rad51b RAD51 paralog B acts_upstream_of_or_within IMP (PMID:10567591) MGI PMID:10567591 NCBI chr12:79,344,032...79,895,034
Ensembl chr12:79,344,056...79,861,464 		JBrowse link
G Rtf1 RTF1, Paf1/RNA polymerase II complex component acts_upstream_of_or_within IMP (PMID:24036311) MGI PMID:24036311 NCBI chr 2:119,505,549...119,565,888
Ensembl chr 2:119,505,549...119,565,888 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within IMP (PMID:11163203) MGI PMID:11163203 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Ubtfl1 upstream binding transcription factor, RNA polymerase I-like 1 acts_upstream_of_or_within IMP (PMID:19915186) MGI PMID:19915186 NCBI chr 9:18,315,714...18,322,798
Ensembl chr 9:18,315,714...18,324,473 		JBrowse link
G Zfp830 zinc finger protein 830 acts_upstream_of_or_within IMP (PMID:15988037) MGI PMID:15988037 NCBI chr11:82,655,171...82,658,448
Ensembl chr11:82,655,171...82,656,761 		JBrowse link
blastocyst hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 9130008F23Rik RIKEN cDNA 9130008F23 gene acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr17:41,186,373...41,191,449
Ensembl chr17:41,186,373...41,191,450 		JBrowse link
G Akap3 A kinase anchor protein 3 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 6:126,830,061...126,851,271
Ensembl chr 6:126,830,061...126,851,271 		JBrowse link
G Ankrd7 ankyrin repeat domain 7 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 6:18,855,830...18,879,588
Ensembl chr 6:18,866,317...18,879,585 		JBrowse link
G Arhgdig Rho GDP dissociation inhibitor gamma acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr17:26,418,157...26,420,324
Ensembl chr17:26,418,157...26,426,760 		JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 8:84,682,323...84,696,824
Ensembl chr 8:84,682,136...84,696,826 		JBrowse link
G Bcor BCL6 interacting corepressor acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr  X:11,902,976...12,026,769
Ensembl chr  X:11,902,979...12,026,594 		JBrowse link
G Ccdc24 coiled-coil domain containing 24 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 4:117,725,946...117,729,808
Ensembl chr 4:117,723,721...117,729,754 		JBrowse link
G Ccdc62 coiled-coil domain containing 62 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 5:124,068,683...124,107,958
Ensembl chr 5:124,065,481...124,107,958 		JBrowse link
G Cmtm3 CKLF-like MARVEL transmembrane domain containing 3 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 8:105,065,993...105,074,304
Ensembl chr 8:105,066,042...105,074,304 		JBrowse link
G Coprs coordinator of PRMT5, differentiation stimulator acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 8:13,934,787...13,940,501
Ensembl chr 8:13,934,794...13,940,281 		JBrowse link
G Crxos cone-rod homeobox, opposite strand acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 7:15,616,542...15,637,945
Ensembl chr 7:15,616,542...15,637,945 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 7:110,628,158...110,655,584
Ensembl chr 7:110,628,158...110,655,584 		JBrowse link
G Fbll1 fibrillarin-like 1 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr11:35,688,207...35,689,711
Ensembl chr11:35,688,209...35,689,711 		JBrowse link
G Grn granulin acts_upstream_of_or_within IDA (PMID:15901638) MGI PMID:15901638 NCBI chr11:102,321,333...102,327,635
Ensembl chr11:102,321,141...102,327,874 		JBrowse link
G Hcfc1 host cell factor C1 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr  X:72,986,400...73,011,430
Ensembl chr  X:72,986,398...73,009,963 		JBrowse link
G Hs3st6 heparan sulfate (glucosamine) 3-O-sulfotransferase 6 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr17:24,971,565...24,977,664
Ensembl chr17:24,971,962...24,977,658 		JBrowse link
G Lpar6 lysophosphatidic acid receptor 6 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr14:73,475,331...73,477,798
Ensembl chr14:73,475,335...73,480,734 		JBrowse link
G Ndufa2 NADH:ubiquinone oxidoreductase subunit A2 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr18:36,875,385...36,877,640
Ensembl chr18:36,875,385...36,877,610 		JBrowse link
G Necab1 N-terminal EF-hand calcium binding protein 1 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 4:14,952,245...15,149,804
Ensembl chr 4:14,952,245...15,149,794 		JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr11:59,861,440...59,937,394
Ensembl chr11:59,861,440...59,937,315 		JBrowse link
G Phf6 PHD finger protein 6 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr  X:52,001,091...52,045,838
Ensembl chr  X:52,001,143...52,045,820 		JBrowse link
G Plpp4 phospholipid phosphatase 4 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 7:128,858,114...128,993,138
Ensembl chr 7:128,858,755...128,993,136 		JBrowse link
G Ppp4r4 protein phosphatase 4, regulatory subunit 4 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr12:103,498,509...103,580,098
Ensembl chr12:103,498,542...103,580,090 		JBrowse link
G Prss28 serine protease 28 acts_upstream_of_or_within IMP
IGI		 (PMID:17156484) MGI PMID:17156484 NCBI chr17:25,527,620...25,530,850
Ensembl chr17:25,527,617...25,530,852 		JBrowse link
G Prss29 serine protease 29 acts_upstream_of_or_within IGI
IMP		 (PMID:17156484) MGI PMID:17156484 NCBI chr17:25,537,628...25,541,658
Ensembl chr17:25,537,620...25,541,659 		JBrowse link
G Rbbp8 retinoblastoma binding protein 8, endonuclease acts_upstream_of_or_within IMP (PMID:15831459) MGI PMID:15831459 NCBI chr18:11,766,333...11,876,264
Ensembl chr18:11,766,333...11,878,278 		JBrowse link
G Slc25a34 solute carrier family 25, member 34 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 4:141,346,130...141,351,202
Ensembl chr 4:141,346,135...141,351,132 		JBrowse link
G Slc35e2 solute carrier family 35, member E2 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 4:155,685,873...155,707,797
Ensembl chr 4:155,685,873...155,707,797 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within IMP (PMID:11163203) MGI PMID:11163203 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 acts_upstream_of_or_within IMP (PMID:11263494)
(PMID:11313485)		 MGI PMID:11263494 PMID:11313485 NCBI chr10:75,732,603...75,757,448
Ensembl chr10:75,732,603...75,757,451 		JBrowse link
G Smim14 small integral membrane protein 14 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 5:65,604,187...65,694,492
Ensembl chr 5:65,604,187...65,694,527 		JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 2:13,659,745...13,798,659
Ensembl chr 2:13,655,832...13,798,875 		JBrowse link
G Stmn3 stathmin-like 3 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 2:180,948,252...180,956,293
Ensembl chr 2:180,948,252...180,956,293 		JBrowse link
G Suds3 suppressor of defective silencing 3 homolog (S. cerevisiae) acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 5:117,229,743...117,257,980
Ensembl chr 5:117,229,745...117,254,178 		JBrowse link
G Suv39h1 suppressor of variegation 3-9 1 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr  X:7,927,401...7,940,994
Ensembl chr  X:7,927,410...7,940,999 		JBrowse link
G Tbl1xr1 transducin (beta)-like 1X-linked receptor 1 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 3:22,130,756...22,270,758
Ensembl chr 3:22,130,816...22,270,758 		JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr  X:36,137,948...36,147,875
Ensembl chr  X:36,064,828...36,147,875 		JBrowse link
G Zbed6 zinc finger, BED type containing 6 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 1:133,547,606...133,589,112
Ensembl chr 1:133,547,678...133,589,056 		JBrowse link
G Zfp14 zinc finger protein 14 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 7:29,735,782...29,751,664
Ensembl chr 7:29,735,784...29,750,805 		JBrowse link
G Zfp420 zinc finger protein 420 acts_upstream_of_or_within IMP (PMID:27869233) MGI PMID:27869233 NCBI chr 7:29,559,392...29,576,727
Ensembl chr 7:29,559,404...29,576,717 		JBrowse link
branching involved in labyrinthine layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adm adrenomedullin acts_upstream_of_or_within IMP (PMID:16981008) MGI PMID:16981008 NCBI chr 7:110,226,864...110,229,027
Ensembl chr 7:110,226,868...110,229,027 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IMP (PMID:9435295) MGI PMID:9435295 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within IMP (PMID:23610556) MGI PMID:23610556 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Gcm1 glial cells missing homolog 1 acts_upstream_of_or_within IMP (PMID:10888880) MGI PMID:10888880 NCBI chr 9:77,959,240...77,972,906
Ensembl chr 9:77,959,206...77,972,906 		JBrowse link
G Grb2 growth factor receptor bound protein 2 acts_upstream_of_or_within IMP (PMID:11369229) MGI PMID:11369229 NCBI chr11:115,534,871...115,599,423
Ensembl chr11:115,534,871...115,599,423 		JBrowse link
G Il10 interleukin 10 acts_upstream_of_or_within IMP (PMID:12842419) MGI PMID:12842419 NCBI chr 1:130,947,459...130,952,707
Ensembl chr 1:130,947,582...130,952,711 		JBrowse link
G Llgl2 LLGL2 scribble cell polarity complex component acts_upstream_of_or_within IMP (PMID:21606200) MGI PMID:21606200 NCBI chr11:115,714,855...115,746,606
Ensembl chr11:115,714,875...115,746,606 		JBrowse link
G Rspo3 R-spondin 3 acts_upstream_of_or_within IMP (PMID:16963017) MGI PMID:16963017 NCBI chr10:29,329,102...29,411,863
Ensembl chr10:29,328,412...29,411,863 		JBrowse link
G Socs3 suppressor of cytokine signaling 3 acts_upstream_of_or_within IMP (PMID:11481489) MGI PMID:11481489 NCBI chr11:117,856,905...117,860,192
Ensembl chr11:117,856,905...117,860,873 		JBrowse link
G Spint1 serine protease inhibitor, Kunitz type 1 acts_upstream_of_or_within IMP (PMID:17174946) MGI PMID:17174946 NCBI chr 2:119,067,841...119,079,995
Ensembl chr 2:119,067,843...119,080,008 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within IMP (PMID:30236446) MGI PMID:30236446 NCBI chr 5:124,678,835...124,688,566
Ensembl chr 5:124,678,758...124,688,569 		JBrowse link
cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in IMP (MGI:1354065|PMID:10716450)
(PMID:10716450)		 UniProt PMID:10716450 MGI:1354065 NCBI chr 9:118,307,259...118,315,176
Ensembl chr 9:118,307,280...118,315,200 		JBrowse link
G Gcm1 glial cells missing homolog 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:10888880) MGI
GO_Central		 PMID:10888880 GO_REF:0000033 NCBI chr 9:77,959,240...77,972,906
Ensembl chr 9:77,959,206...77,972,906 		JBrowse link
G Krt19 keratin 19 acts_upstream_of_or_within IGI (PMID:11062258) MGI PMID:11062258 NCBI chr11:100,031,636...100,036,752
Ensembl chr11:100,031,636...100,039,491 		JBrowse link
G Krt8 keratin 8 acts_upstream_of_or_within IGI (PMID:11062258) MGI PMID:11062258 NCBI chr15:101,905,146...101,912,777
Ensembl chr15:101,905,133...101,912,917 		JBrowse link
G Stk3 serine/threonine kinase 3 acts_upstream_of_or_within IGI (PMID:19786569) MGI PMID:19786569 NCBI chr15:34,875,645...35,155,990
Ensembl chr15:34,875,642...35,179,067 		JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within IGI (PMID:19786569) MGI PMID:19786569 NCBI chr 2:163,916,033...163,997,444
Ensembl chr 2:163,912,242...163,997,444 		JBrowse link
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU domain, class 5, transcription factor 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr17:35,816,929...35,821,674
Ensembl chr17:35,816,915...35,821,669 		JBrowse link
cell migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amot angiomotin acts_upstream_of_or_within IMP (PMID:12676095) MGI PMID:12676095 NCBI chr  X:144,229,420...144,288,145
Ensembl chr  X:144,229,421...144,288,177 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within IGI (PMID:15004567) MGI PMID:15004567 NCBI chr 4:82,799,988...82,803,388
Ensembl chr 4:82,799,988...82,803,385 		JBrowse link
G Gpc3 glypican 3 involved_in ISS UniProt GO_REF:0000024 NCBI chr  X:51,361,303...51,702,851
Ensembl chr  X:51,361,303...51,702,827 		JBrowse link
G Lefty1 left right determination factor 1 acts_upstream_of_or_within IGI (PMID:15004567) MGI PMID:15004567 NCBI chr 1:180,762,587...180,765,966
Ensembl chr 1:180,762,587...180,765,965 		JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 acts_upstream_of_or_within IGI (PMID:15142971) MGI PMID:15142971 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IGI (PMID:15142971) MGI PMID:15142971 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 7:25,016,589...25,065,342
Ensembl chr 7:25,016,589...25,065,342 		JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within IMP (PMID:17151016) MGI PMID:17151016 NCBI chr 1:180,520,608...180,524,599
Ensembl chr 1:180,520,608...180,524,599 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IMP (PMID:16831833) MGI PMID:16831833 NCBI chr 2:80,330,856...80,411,526
Ensembl chr 2:80,330,856...80,411,724 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IDA (PMID:15004567) MGI PMID:15004567 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within IMP (PMID:21069829) MGI PMID:21069829 NCBI chr 7:140,437,310...140,443,644
Ensembl chr 7:140,436,870...140,444,285 		JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 acts_upstream_of_or_within IMP (PMID:21146513) MGI PMID:21146513 NCBI chr 1:4,561,154...4,567,624
Ensembl chr 1:4,561,154...4,567,577 		JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IMP (PMID:10421635) MGI PMID:10421635 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
cell proliferation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tex19.1 testis expressed gene 19.1 acts_upstream_of_or_within IMP (PMID:23364048) MGI PMID:23364048 NCBI chr11:121,036,969...121,039,140
Ensembl chr11:121,036,969...121,039,145 		JBrowse link
cell-cell adhesion involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within IMP (PMID:21069829) MGI PMID:21069829 NCBI chr 7:140,437,310...140,443,644
Ensembl chr 7:140,436,870...140,444,285 		JBrowse link
chordate embryonic development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 breast cancer 1, early onset acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:9171368) MGI
GO_Central		 PMID:9171368 GO_REF:0000033 NCBI chr11:101,379,587...101,442,808
Ensembl chr11:101,379,590...101,442,781 		JBrowse link
G Brca2 breast cancer 2, early onset acts_upstream_of_or_within IMP (PMID:9171368) MGI PMID:9171368 NCBI chr 5:150,445,759...150,493,612
Ensembl chr 5:150,446,095...150,493,794 		JBrowse link
G Cenpu centromere protein U acts_upstream_of_or_within IMP (PMID:23724000) MGI PMID:23724000 NCBI chr 8:47,005,054...47,033,603
Ensembl chr 8:47,005,063...47,033,042 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Fas Fas cell surface death receptor ISO RGD PMID:11331665 RGD:8686426 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
G Lims1 LIM and senescent cell antigen-like domains 1 acts_upstream_of_or_within IMP (PMID:15798193) MGI PMID:15798193 NCBI chr10:58,159,164...58,260,513
Ensembl chr10:58,159,288...58,260,513 		JBrowse link
G Trip6 thyroid hormone receptor interactor 6 involved_in IEP (MGI:5509005|PMID:10826496) UniProt PMID:10826496 MGI:5509005 NCBI chr 5:137,308,160...137,312,469
Ensembl chr 5:137,307,916...137,312,666 		JBrowse link
G Usp17lc ubiquitin specific peptidase 17-like C involved_in IMP (MGI:5462517|PMID:22984479)
(PMID:22984479)		 CACAO PMID:22984479 MGI:5462517 NCBI chr 7:103,065,903...103,068,381
Ensembl chr 7:103,064,279...103,069,087 		JBrowse link
G Vezt vezatin, adherens junctions transmembrane protein acts_upstream_of_or_within IMP (PMID:16199027) MGI PMID:16199027 NCBI chr10:93,797,384...93,871,661
Ensembl chr10:93,775,027...93,871,679 		JBrowse link
chorio-allantoic fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in IGI (MGI:1332253|PMID:10079236)
(PMID:10079236)		 BHF-UCL PMID:10079236 MGI:1332253 NCBI chr 9:75,682,647...75,807,598
Ensembl chr 9:75,682,646...75,807,592 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in IGI (MGI:1332253|PMID:10079236)
(PMID:10079236)		 BHF-UCL PMID:10079236 MGI:1332253 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within IMP (PMID:12446788) MGI PMID:12446788 NCBI chr 3:145,352,726...145,355,740
Ensembl chr 3:145,352,731...145,355,736 		JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within IMP (PMID:10021343) MGI PMID:10021343 NCBI chr 5:29,940,896...29,991,476
Ensembl chr 5:29,940,686...30,023,132 		JBrowse link
G Erf Ets2 repressor factor acts_upstream_of_or_within IMP (PMID:17502352) MGI PMID:17502352 NCBI chr 7:24,941,985...24,950,522
Ensembl chr 7:24,941,986...24,950,186 		JBrowse link
G Itga4 integrin alpha 4 acts_upstream_of_or_within IMP (PMID:7539359) MGI PMID:7539359 NCBI chr 2:79,084,767...79,163,458
Ensembl chr 2:79,085,770...79,163,467 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IGI (PMID:10090727) MGI PMID:10090727 NCBI chr 3:130,903,972...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Vcam1 vascular cell adhesion molecule 1 acts_upstream_of_or_within IMP (PMID:7530222)
(PMID:7539357)		 MGI PMID:7530222 PMID:7539357 NCBI chr 3:115,903,669...115,923,337
Ensembl chr 3:115,903,598...115,923,337 		JBrowse link
G Wnt7b wingless-type MMTV integration site family, member 7B acts_upstream_of_or_within IMP (PMID:11543617) MGI PMID:11543617 NCBI chr15:85,419,638...85,466,022
Ensembl chr15:85,419,638...85,466,674 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 acts_upstream_of_or_within IMP (PMID:15226444) MGI PMID:15226444 NCBI chr12:80,154,534...80,159,787
Ensembl chr12:80,154,528...80,159,787 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in IMP (MGI:3719969|PMID:17609112)
(PMID:17609112)		 UniProt PMID:17609112 MGI:3719969 NCBI chr 4:132,083,233...132,149,765
Ensembl chr 4:132,083,234...132,149,800 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within IGI (PMID:18606138) MGI PMID:18606138 NCBI chr15:38,940,327...38,950,516
Ensembl chr15:38,940,327...38,950,516 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within IGI (PMID:16116426) MGI PMID:16116426 NCBI chr 4:155,931,829...155,943,760
Ensembl chr 4:155,931,859...155,943,760 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within IGI (PMID:19008950)
(PMID:16116426)		 MGI PMID:16116426 PMID:19008950 NCBI chr11:69,891,418...69,900,935
Ensembl chr11:69,891,421...69,903,127 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within IGI (PMID:19008950) MGI PMID:19008950 NCBI chr16:20,335,694...20,352,763
Ensembl chr16:20,335,732...20,352,760 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within IMP (PMID:10072433) MGI PMID:10072433 NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459 		JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within IGI (PMID:17433286) MGI PMID:17433286 NCBI chr 2:80,242,314...80,277,740
Ensembl chr 2:80,242,314...80,277,969 		JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within IGI (PMID:20940229) MGI PMID:20940229 NCBI chr11:102,495,257...102,498,884
Ensembl chr11:102,495,222...102,498,884 		JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IMP (PMID:17395647) MGI PMID:17395647 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within IGI (PMID:20643356) MGI PMID:20643356 NCBI chr 4:135,269,199...135,300,943
Ensembl chr 4:135,269,199...135,300,941 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297 		JBrowse link
G Hpn hepsin involved_in IMP (MGI:5306554|PMID:20683358)
(PMID:20683358)		 UniProt PMID:20683358 MGI:5306554 NCBI chr 7:30,798,150...30,814,751
Ensembl chr 7:30,798,150...30,814,715 		JBrowse link
G Myo3a myosin IIIA involved_in IMP (MGI:5766107|PMID:26754646) UniProt PMID:26754646 MGI:5766107 NCBI chr 2:22,232,360...22,508,693
Ensembl chr 2:22,232,316...22,508,264 		JBrowse link
G Myo3b myosin IIIB involved_in IMP (MGI:5766107|PMID:26754646)
(PMID:26754646)		 UniProt PMID:26754646 MGI:5766107 NCBI chr 2:69,869,464...70,259,542
Ensembl chr 2:69,869,470...70,259,542 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA		 MGI
Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr13:56,398,291...56,399,993
Ensembl chr13:56,398,291...56,399,976 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 IGI
IMP		 (MGI:4822275|PMID:20727173)
(PMID:20727173)
(PMID:16916509)
(MGI:84247|PMID:8951055)		 UniProt
MGI
DFLAT		 PMID:8951055 PMID:16916509 PMID:20727173 MGI:4822275 MGI:84247 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,735,057...44,826,310 		JBrowse link
G Pou3f4 POU domain, class 3, transcription factor 4 involved_in IGI (MGI:5284768|PMID:18231833)
(PMID:18231833)		 UniProt PMID:18231833 MGI:5284768 NCBI chr  X:109,857,985...109,862,714
Ensembl chr  X:109,857,886...109,860,813 		JBrowse link
G Ptk7 PTK7 protein tyrosine kinase 7 acts_upstream_of_or_within IMP (PMID:20704721) MGI PMID:20704721 NCBI chr17:46,875,377...46,940,975
Ensembl chr17:46,875,397...46,940,430 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within IMP (PMID:20016102) MGI PMID:20016102 NCBI chr 5:143,491,236...143,513,786
Ensembl chr 5:143,489,389...143,513,791 		JBrowse link
G Six1 sine oculis-related homeobox 1 acts_upstream_of_or_within IMP (PMID:12874121) MGI PMID:12874121 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IMP (PMID:20346939) MGI PMID:20346939 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Tbx1 T-box 1 involved_in
acts_upstream_of_or_within		 IGI
IMP		 (MGI:5284768|PMID:18231833)
(PMID:18231833)
(PMID:17825816)		 UniProt
MGI		 PMID:17825816 PMID:18231833 MGI:5284768 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tbx18 T-box18 acts_upstream_of_or_within IMP (PMID:18353863) MGI PMID:18353863 NCBI chr 9:87,584,853...87,613,313
Ensembl chr 9:87,584,853...87,613,313 		JBrowse link
G Tbx2 T-box 2 involved_in IMP (MGI:6710296|PMID:33795231) UniProt PMID:33795231 MGI:6710296 NCBI chr11:85,723,441...85,732,774
Ensembl chr11:85,723,377...85,732,774 		JBrowse link
G Tifab TRAF-interacting protein with forkhead-associated domain, family member B involved_in ISO
IEA		 MGI
Ensembl		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr13:56,318,917...56,326,816
Ensembl chr13:56,321,517...56,326,698 		JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within IMP (PMID:10575115) MGI PMID:10575115 NCBI chr12:91,367,767...91,507,283
Ensembl chr12:91,351,337...91,516,582 		JBrowse link
G Vangl2 VANGL planar cell polarity 2 acts_upstream_of_or_within IGI
IMP		 (PMID:20940229)
(PMID:17433286)
(PMID:20643356)
(PMID:16116426), (PMID:18606138)
(PMID:19008950)		 MGI PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IMP
IGI		 (PMID:17433286) MGI PMID:17433286 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within IMP (PMID:21980308) MGI PMID:21980308 NCBI chr18:5,591,330...5,775,468
Ensembl chr18:5,591,860...5,775,467 		JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephronophthisis 3 (adolescent) involved_in ISO
IEA		 MGI
Ensembl		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr 9:103,879,743...103,921,010
Ensembl chr 9:103,879,743...103,921,017 		JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within IGI (PMID:16571627) MGI PMID:16571627 NCBI chr 4:155,931,829...155,943,760
Ensembl chr 4:155,931,859...155,943,760 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within IGI
IMP		 (PMID:16571627) MGI PMID:16571627 NCBI chr11:69,891,418...69,900,935
Ensembl chr11:69,891,421...69,903,127 		JBrowse link
G Vangl2 VANGL planar cell polarity 2 acts_upstream_of_or_within IMP
IGI		 (PMID:16571627), (PMID:17229766) MGI PMID:16571627 PMID:17229766 NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011 		JBrowse link
G Zfp568 zinc finger protein 568 acts_upstream_of_or_within IMP (PMID:18701545) MGI PMID:18701545 NCBI chr 7:29,683,380...29,727,707
Ensembl chr 7:29,683,380...29,727,707 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI (PMID:18257070) MGI PMID:18257070 NCBI chr 8:23,901,401...23,939,648
Ensembl chr 8:23,901,518...23,939,648 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IDA (PMID:15218525) MGI PMID:15218525 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Fkbp8 FK506 binding protein 8 acts_upstream_of_or_within IMP
IGI
IDA		 (PMID:18590716)
(PMID:18003640)		 MGI PMID:18003640 PMID:18590716 NCBI chr 8:70,980,371...70,987,978
Ensembl chr 8:70,980,374...70,987,978 		JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within IGI (PMID:23383217) MGI PMID:23383217 NCBI chr12:57,585,750...57,594,815
Ensembl chr12:57,587,414...57,593,702 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within IDA
IGI		 (PMID:18590716)
(PMID:23383217)
(PMID:9226455)		 MGI PMID:9226455 PMID:18590716 PMID:23383217 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within IMP
IGI		 (PMID:17504940), (PMID:17504941)
(PMID:17504941)		 MGI PMID:17504940 PMID:17504941 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IMP
IDA		 (PMID:18590716), (PMID:19286674)
(PMID:9247260)		 MGI PMID:9247260 PMID:18590716 PMID:19286674 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within IGI (PMID:9226455) MGI PMID:9226455 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589 		JBrowse link
G Kif3a kinesin family member 3A involved_in
acts_upstream_of_or_within		 IMP
IGI		 (MGI:4888042|PMID:21209331)
(PMID:18590716), (PMID:19286674)		 BHF-UCL
MGI		 PMID:18590716 PMID:19286674 PMID:21209331 MGI:4888042 NCBI chr11:53,456,531...53,495,075
Ensembl chr11:53,458,206...53,492,794 		JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within IDA (PMID:18590716) MGI PMID:18590716 NCBI chr 5:29,678,821...29,683,468
Ensembl chr 5:29,678,032...29,683,468 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within IDA (PMID:18590716) MGI PMID:18590716 NCBI chr 4:139,464,357...139,560,841
Ensembl chr 4:139,464,373...139,560,839 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within IGI (PMID:10557208) MGI PMID:10557208 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within IGI (PMID:10557208) MGI PMID:10557208 NCBI chr 1:180,054,569...180,091,030
Ensembl chr 1:180,054,569...180,091,003 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within IMP (PMID:9262482) MGI PMID:9262482 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in IMP (MGI:69552|PMID:7720556)
(PMID:7720556)		 UniProt PMID:7720556 MGI:69552 NCBI chr 1:33,758,991...33,781,642
Ensembl chr 1:33,758,968...33,781,645 		JBrowse link
G Rnf220 ring finger protein 220 acts_upstream_of_or_within IMP (PMID:30177510) MGI PMID:30177510 NCBI chr 4:117,128,660...117,354,249
Ensembl chr 4:117,128,660...117,354,249 		JBrowse link
G Shh sonic hedgehog involved_in
acts_upstream_of_or_within		 IMP
IDA
IGI		 (MGI:4888042|PMID:21209331)
(PMID:17442700), (PMID:18590716)
(PMID:17504941)		 BHF-UCL
MGI		 PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 MGI:4888042 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IMP (PMID:18590716) MGI PMID:18590716 NCBI chr 6:29,735,480...29,761,359
Ensembl chr 6:29,735,502...29,761,364 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within IMP (PMID:16357211) MGI PMID:16357211 NCBI chr 5:122,377,558...122,402,557
Ensembl chr 5:122,375,911...122,402,523 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IMP (PMID:19286674) MGI PMID:19286674 NCBI chr 6:128,298,103...128,332,833
Ensembl chr 6:128,298,124...128,332,814 		JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A acts_upstream_of_or_within IMP (PMID:8299937) MGI PMID:8299937 NCBI chr11:59,138,859...59,181,579
Ensembl chr11:59,138,859...59,181,578 		JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within IMP (PMID:10932191) MGI PMID:10932191 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Gjb6 gap junction protein, beta 6 acts_upstream_of_or_within IMP (PMID:12490528) MGI PMID:12490528 NCBI chr14:57,360,760...57,370,764
Ensembl chr14:57,360,760...57,371,068 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr15:8,319,308...8,494,799
Ensembl chr15:8,320,101...8,473,947 		JBrowse link
G Tbx1 T-box 1 acts_upstream_of_or_within IMP (PMID:15190012) MGI PMID:15190012 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within IMP (PMID:22228095) MGI PMID:22228095 NCBI chr 5:65,357,039...65,417,758
Ensembl chr 5:65,357,039...65,417,758 		JBrowse link
ectoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 acts_upstream_of_or_within IGI (PMID:10498685) MGI PMID:10498685 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889 		JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IGI (PMID:10498685) MGI PMID:10498685 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elf5 E74-like factor 5 acts_upstream_of_or_within IGI (PMID:25446535) MGI PMID:25446535 NCBI chr 2:103,242,443...103,281,334
Ensembl chr 2:103,242,033...103,281,334 		JBrowse link
G Ets2 E26 avian leukemia oncogene 2, 3' domain acts_upstream_of_or_within IGI (PMID:25446535) MGI PMID:25446535 NCBI chr16:95,503,274...95,522,093
Ensembl chr16:95,502,942...95,522,095 		JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 acts_upstream_of_or_within IDA (PMID:10742100) MGI PMID:10742100 NCBI chr17:35,816,929...35,821,674
Ensembl chr17:35,816,915...35,821,669 		JBrowse link
embryo development ending in birth or egg hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ace angiotensin I converting enzyme involved_in ISO RGD
GO_Central
MGI		 PMID:1784836 GO_REF:0000096 MGI:4417868 RGD:12879818 NCBI chr11:105,858,774...105,880,790
Ensembl chr11:105,858,771...105,880,790 		JBrowse link
G Akirin2 akirin 2 involved_in IMP (MGI:3771766|PMID:18066067)
(PMID:18066067)		 UniProt PMID:18066067 MGI:3771766 NCBI chr 4:34,550,615...34,566,930
Ensembl chr 4:34,550,937...34,566,908 		JBrowse link
G Camsap3 calmodulin regulated spectrin-associated protein family, member 3 involved_in IDA (MGI:6094483|PMID:28860385) UniProt PMID:28860385 MGI:6094483 NCBI chr 8:3,637,237...3,659,075
Ensembl chr 8:3,637,293...3,659,075 		JBrowse link
G Cdk5r1 cyclin dependent kinase 5, regulatory subunit 1 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr11:80,367,849...80,372,010
Ensembl chr11:80,367,849...80,372,010 		JBrowse link
G Colec10 collectin sub-family member 10 involved_in NAS (MGI:3607897|PMID:12450124)
(PMID:12450124)		 UniProt PMID:12450124 MGI:3607897 NCBI chr15:54,274,170...54,329,755
Ensembl chr15:54,274,170...54,329,754 		JBrowse link
G Evx1 even-skipped homeobox 1 acts_upstream_of_or_within IMP (PMID:7958869) MGI PMID:7958869 NCBI chr 6:52,290,483...52,295,374
Ensembl chr 6:52,290,483...52,295,363 		JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO RGD
GO_Central
MGI		 PMID:19476451 GO_REF:0000096 MGI:4417868 RGD:2315829 NCBI chr 3:37,402,616...37,464,255
Ensembl chr 3:37,402,495...37,464,257 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IMP (PMID:14623825) MGI PMID:14623825 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Fxn frataxin acts_upstream_of_or_within IMP (PMID:10767347) MGI PMID:10767347 NCBI chr19:24,236,909...24,257,954
Ensembl chr19:24,238,817...24,257,969 		JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in IMP (MGI:3582004|PMID:15919177)
(PMID:15919177)		 UniProt PMID:15919177 MGI:3582004 NCBI chr11:8,943,137...8,961,240
Ensembl chr11:8,943,137...8,961,191 		JBrowse link
G Kif1b kinesin family member 1B involved_in NAS (MGI:1346960|PMID:10571041)
(PMID:10571041)		 UniProt PMID:10571041 MGI:1346960 NCBI chr 4:149,260,776...149,392,762
Ensembl chr 4:149,260,776...149,392,150 		JBrowse link
G Osr2 odd-skipped related 2 involved_in IEP (MGI:2149941|PMID:11520675)
(PMID:11520675)		 UniProt PMID:11520675 MGI:2149941 NCBI chr15:35,296,244...35,303,451
Ensembl chr15:35,296,244...35,303,451 		JBrowse link
G Rictor RPTOR independent companion of MTOR, complex 2 involved_in IMP (MGI:3702793|PMID:16962829) UniProt PMID:16962829 MGI:3702793 NCBI chr15:6,737,827...6,829,882
Ensembl chr15:6,737,860...6,829,882 		JBrowse link
G Scel sciellin involved_in IDA (MGI:1928154|PMID:11112355) UniProt PMID:11112355 MGI:1928154 NCBI chr14:103,750,499...103,850,782
Ensembl chr14:103,750,778...103,850,233 		JBrowse link
G Sebox SEBOX homeobox acts_upstream_of_or_within IMP (PMID:18753614) MGI PMID:18753614 NCBI chr11:78,394,328...78,395,907
Ensembl chr11:78,394,273...78,395,907 		JBrowse link
G Stox2 storkhead box 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 8:47,633,083...47,866,943
Ensembl chr 8:47,633,083...47,899,397 		JBrowse link
G Trp53 transformation related protein 53 acts_upstream_of_or_within IGI (PMID:16702401) MGI PMID:16702401 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
G Trp53bp2 transformation related protein 53 binding protein 2 acts_upstream_of_or_within IGI (PMID:16702401) MGI PMID:16702401 NCBI chr 1:182,236,737...182,289,997
Ensembl chr 1:182,236,737...182,289,997 		JBrowse link
G Ubr3 ubiquitin protein ligase E3 component n-recognin 3 involved_in IMP (MGI:3718176|PMID:17462990)
(PMID:17462990)		 UniProt PMID:17462990 MGI:3718176 NCBI chr 2:69,727,276...69,854,354
Ensembl chr 2:69,727,590...69,854,357 		JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in IDA (PMID:11118896) MGI PMID:11118896 NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134 		JBrowse link
G Chrdl1 chordin-like 1 involved_in IDA (PMID:11118896), (PMID:11401399) MGI PMID:11118896 PMID:11401399 NCBI chr  X:142,068,670...142,177,282
Ensembl chr  X:142,068,670...142,177,258 		JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr  X:101,290,984...101,295,787
Ensembl chr  X:101,290,987...101,295,787 		JBrowse link
G Cobl cordon-bleu WH2 repeat involved_in IEP (MGI:76306|PMID:7586755) BHF-UCL PMID:7586755 MGI:76306 NCBI chr11:12,186,676...12,415,022
Ensembl chr11:12,186,608...12,414,960 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IDA (PMID:9230313) MGI PMID:9230313 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Frat1 frequently rearranged in advanced T cell lymphomas acts_upstream_of_or_within IDA (PMID:10534617) MGI PMID:10534617 NCBI chr19:41,818,409...41,821,022
Ensembl chr19:41,818,409...41,821,022 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Peg12 paternally expressed 12 acts_upstream_of_or_within IDA (PMID:10534617) MGI PMID:10534617 NCBI chr 7:62,111,619...62,114,258
Ensembl chr 7:62,111,619...62,114,258 		JBrowse link
G Stil Scl/Tal1 interrupting locus acts_upstream_of_or_within IMP (PMID:10385121) MGI PMID:10385121 NCBI chr 4:114,857,287...114,900,404
Ensembl chr 4:114,857,356...114,900,393 		JBrowse link
G Wnt1 wingless-type MMTV integration site family, member 1 involved_in IMP (MGI:4822553|PMID:2534596)
(PMID:2534596)		 BHF-UCL PMID:2534596 MGI:4822553 NCBI chr15:98,687,738...98,691,711
Ensembl chr15:98,687,738...98,691,718 		JBrowse link
G Wnt7a wingless-type MMTV integration site family, member 7A involved_in ISO
IEA		 MGI
Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr 6:91,340,963...91,388,335
Ensembl chr 6:91,340,963...91,388,345 		JBrowse link
embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion molecule-related/down-regulated by oncogenes acts_upstream_of_or_within IMP
IGI		 (PMID:16647303)
(PMID:16647304)		 MGI PMID:16647303 PMID:16647304 NCBI chr 9:35,332,836...35,418,948
Ensembl chr 9:35,332,424...35,418,948 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in IMP (MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618)
(PMID:19767740), (PMID:21935430), (PMID:23806618)		 UniProt PMID:19767740 PMID:21935430 PMID:23806618 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chr 7:44,545,517...44,552,053
Ensembl chr 7:44,545,503...44,552,055 		JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within IMP (PMID:17565372) MGI PMID:17565372 NCBI chr 8:70,359,719...70,450,093
Ensembl chr 8:70,359,726...70,449,034 		JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist involved_in IMP (MGI:5543884|PMID:23850456) UniProt PMID:23850456 MGI:5543884 NCBI chr 1:174,661,352...174,749,386
Ensembl chr 1:174,661,351...174,749,385 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in IMP (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660 		JBrowse link
G Mab21l2 mab-21-like 2 acts_upstream_of_or_within IMP (PMID:15385160) MGI PMID:15385160 NCBI chr 3:86,453,357...86,455,590
Ensembl chr 3:86,452,888...86,455,590 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IMP (PMID:16831833) MGI PMID:16831833 NCBI chr 2:80,330,856...80,411,526
Ensembl chr 2:80,330,856...80,411,724 		JBrowse link
G Ofd1 OFD1, centriole and centriolar satellite protein involved_in IMP (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr  X:165,171,503...165,223,704
Ensembl chr  X:165,173,029...165,223,700 		JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (PMID:15013802) MGI PMID:15013802 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Zfp281 zinc finger protein 281 involved_in IMP (MGI:5448369|PMID:21915945)
(PMID:21915945)		 UniProt PMID:21915945 MGI:5448369 NCBI chr 1:136,552,639...136,558,129
Ensembl chr 1:136,552,639...136,557,791 		JBrowse link
embryonic brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO RGD PMID:19819228 RGD:11537397 NCBI chr10:20,827,274...20,956,328
Ensembl chr10:20,828,446...20,956,328 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within IMP (PMID:24947469) MGI PMID:24947469 NCBI chr 5:43,819,715...43,898,317
Ensembl chr 5:43,819,688...43,898,314 		JBrowse link
G Cdc40 cell division cycle 40 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr10:40,707,617...40,759,139
Ensembl chr10:40,707,617...40,759,307 		JBrowse link
G Cdk20 cyclin dependent kinase 20 acts_upstream_of_or_within IMP (PMID:28817564) MGI PMID:28817564 NCBI chr13:64,580,133...64,587,536
Ensembl chr13:64,580,128...64,589,587 		JBrowse link
G Cntnap2 contactin associated protein-like 2 involved_in IMP (PMID:32879327) MGI PMID:32879327 NCBI chr 6:45,036,995...47,278,330
Ensembl chr 6:45,036,291...47,281,147 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IMP (MGI:1931800|PMID:11262227)
(PMID:11262227)		 ParkinsonsUK-UCL PMID:11262227 MGI:1931800 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G En1 engrailed 1 involved_in IMP (MGI:75252|PMID:7624797)
(PMID:7624797)		 ParkinsonsUK-UCL PMID:7624797 MGI:75252 NCBI chr 1:120,530,246...120,535,719
Ensembl chr 1:120,530,147...120,535,721 		JBrowse link
G En2 engrailed 2 involved_in IGI (MGI:75252|PMID:7624797) ParkinsonsUK-UCL PMID:7624797 MGI:75252 NCBI chr 5:28,370,694...28,377,195
Ensembl chr 5:28,370,692...28,377,164 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within IMP (PMID:23469164) MGI PMID:23469164 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within IMP (PMID:20589884) MGI PMID:20589884 NCBI chr  X:100,317,697...100,342,540
Ensembl chr  X:100,317,636...100,341,071 		JBrowse link
G Megf8 multiple EGF-like-domains 8 acts_upstream_of_or_within IMP (PMID:32203821) MGI PMID:32203821 NCBI chr 7:25,016,589...25,065,342
Ensembl chr 7:25,016,589...25,065,342 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid NOT|involved_in IMP (MGI:6196220|PMID:30074985)
(PMID:30074985)		 ARUK-UCL PMID:30074985 MGI:6196220 NCBI chr 4:122,840,643...122,855,844
Ensembl chr 4:122,840,643...122,854,981 		JBrowse link
G Mir34b microRNA 34b acts_upstream_of_or_within IGI (PMID:24982181) MGI PMID:24982181 NCBI chr 9:51,014,862...51,014,945
Ensembl chr 9:51,014,862...51,014,945 		JBrowse link
G Mir34c microRNA 34c acts_upstream_of_or_within IGI (PMID:24982181) MGI PMID:24982181 NCBI chr 9:51,014,334...51,014,410
Ensembl chr 9:51,014,334...51,014,410 		JBrowse link
G Mir449a microRNA 449a acts_upstream_of_or_within IGI (PMID:24982181) MGI PMID:24982181 NCBI chr13:113,174,068...113,174,158
Ensembl chr13:113,174,068...113,174,158 		JBrowse link
G Mir449b microRNA 449b acts_upstream_of_or_within IGI (PMID:24982181) MGI PMID:24982181 NCBI chr13:113,173,953...113,174,032
Ensembl chr13:113,173,953...113,174,032 		JBrowse link
G Mir449c microRNA 449c acts_upstream_of_or_within IGI (PMID:24982181) MGI PMID:24982181 NCBI chr13:113,172,517...113,172,625
Ensembl chr13:113,172,517...113,172,625 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within IMP (PMID:23454480) MGI PMID:23454480 NCBI chr11:87,744,007...87,754,629
Ensembl chr11:87,744,041...87,754,629 		JBrowse link
G Pcnt pericentrin (kendrin) acts_upstream_of_or_within IMP (PMID:25220058) MGI PMID:25220058 NCBI chr10:76,187,098...76,279,988
Ensembl chr10:76,187,097...76,278,620 		JBrowse link
G Phf10 PHD finger protein 10 ISO RGD PMID:24056535 RGD:9588230 NCBI chr17:15,165,269...15,181,550
Ensembl chr17:15,165,271...15,181,535 		JBrowse link
G Ppil1 peptidylprolyl isomerase (cyclophilin)-like 1 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr17:29,469,809...29,482,945
Ensembl chr17:29,469,777...29,483,160 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IMP (PMID:17868671) MGI PMID:17868671 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772 		JBrowse link
G Prickle2 prickle planar cell polarity protein 2 involved_in IMP (PMID:17868671) MGI PMID:17868671 NCBI chr 6:92,347,876...92,683,233
Ensembl chr 6:92,347,889...92,683,136 		JBrowse link
G Rnf112 ring finger protein 112 involved_in IMP (MGI:6154439|PMID:26951452)
(PMID:26951452)		 UniProt PMID:26951452 MGI:6154439 NCBI chr11:61,339,243...61,345,014
Ensembl chr11:61,339,268...61,344,957 		JBrowse link
G Rpl10 ribosomal protein L10 involved_in ISO
ISS		 MGI
UniProt		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr  X:73,314,463...73,316,741
Ensembl chr  X:73,314,418...73,316,741 		JBrowse link
G Rpl10-ps3 ribosomal protein L10, pseudogene 3 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 9:50,255,526...50,256,284
Ensembl chr 9:50,255,501...50,256,268 		JBrowse link
G Slc6a8 solute carrier family 6 (neurotransmitter transporter, creatine), member 8 ISO RGD PMID:15918910 RGD:1599815 NCBI chr  X:72,716,739...72,726,108
Ensembl chr  X:72,716,756...72,726,108 		JBrowse link
G Tbc1d23 TBC1 domain family, member 23 involved_in IMP
IBA		 (MGI:6094290|PMID:28823707) UniProt
GO_Central		 PMID:28823707 GO_REF:0000033 MGI:6094290 NCBI chr16:56,989,225...57,051,891
Ensembl chr16:56,989,225...57,051,867 		JBrowse link
G Tmem94 transmembrane protein 94 acts_upstream_of_or_within IMP (PMID:30526868) MGI PMID:30526868 NCBI chr11:115,656,245...115,689,859
Ensembl chr11:115,656,259...115,690,192 		JBrowse link
G Tra2b transformer 2 beta acts_upstream_of_or_within IMP (PMID:22194695) MGI PMID:22194695 NCBI chr16:22,063,302...22,084,755
Ensembl chr16:22,063,299...22,084,755 		JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within IMP (PMID:21548880) MGI PMID:21548880 NCBI chr 2:120,563,297...120,681,111
Ensembl chr 2:120,563,297...120,681,085 		JBrowse link
G Tubb2b tubulin, beta 2B class IIB acts_upstream_of_or_within IMP (PMID:21515572) MGI PMID:21515572 NCBI chr13:34,310,991...34,314,337
Ensembl chr13:34,310,731...34,314,449 		JBrowse link
G Wnt1 wingless-type MMTV integration site family, member 1 involved_in IDA (MGI:3045659|PMID:15121182)
(PMID:15121182)		 ParkinsonsUK-UCL PMID:15121182 MGI:3045659 NCBI chr15:98,687,738...98,691,711
Ensembl chr15:98,687,738...98,691,718 		JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IGI (PMID:17184764) MGI PMID:17184764 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 involved_in
acts_upstream_of_or_within		 IMP
IGI		 (MGI:3042765|PMID:14623956)
(PMID:17184764)		 UniProt
MGI		 PMID:14623956 PMID:17184764 MGI:3042765 NCBI chr 7:66,040,640...66,077,225
Ensembl chr 7:66,040,638...66,077,265 		JBrowse link
G Cdk20 cyclin dependent kinase 20 acts_upstream_of_or_within IMP (PMID:28817564) MGI PMID:28817564 NCBI chr13:64,580,133...64,587,536
Ensembl chr13:64,580,128...64,589,587 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (PMID:15958512) MGI PMID:15958512 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within IMP (PMID:18791178) MGI PMID:18791178 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within IMP (PMID:23469164) MGI PMID:23469164 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Nes nestin involved_in ISS UniProt GO_REF:0000024 NCBI chr 3:87,878,400...87,887,758
Ensembl chr 3:87,878,385...87,887,758 		JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 acts_upstream_of_or_within IMP (PMID:10498698)
(PMID:10572050)		 MGI PMID:10498698 PMID:10572050 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240 		JBrowse link
G Ppp1r13l protein phosphatase 1, regulatory subunit 13 like acts_upstream_of_or_within IMP (PMID:15661756) MGI PMID:15661756 NCBI chr 7:19,093,639...19,112,465
Ensembl chr 7:19,093,674...19,112,458 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within IGI (PMID:7607067) MGI PMID:7607067 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IGI (PMID:7607067) MGI PMID:7607067 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) acts_upstream_of_or_within IMP (PMID:17473173) MGI PMID:17473173 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within IMP (PMID:21945076) MGI PMID:21945076 NCBI chr 1:91,422,311...91,457,029
Ensembl chr 1:91,422,369...91,457,029 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IMP (PMID:19286674) MGI PMID:19286674 NCBI chr 6:128,298,103...128,332,833
Ensembl chr 6:128,298,124...128,332,814 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within IMP (PMID:22228095) MGI PMID:22228095 NCBI chr 5:65,357,039...65,417,758
Ensembl chr 5:65,357,039...65,417,758 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 stimulated by retinoic acid gene 6 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 9:57,971,076...58,061,287
Ensembl chr 9:57,971,071...58,061,279 		JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr12:34,007,670...34,009,830
Ensembl chr12:34,007,670...34,009,828 		JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within IMP (PMID:10049573) MGI PMID:10049573 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within IGI (PMID:18653562) MGI PMID:18653562 NCBI chr10:17,598,452...17,601,422
Ensembl chr10:17,598,966...17,601,422 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within IMP (PMID:18056999) MGI PMID:18056999 NCBI chr17:31,896,905...31,900,704
Ensembl chr17:31,896,781...31,900,707 		JBrowse link
G Foxf2 forkhead box F2 involved_in IMP (MGI:5297296|PMID:22022403)
(PMID:22022403)		 BHF-UCL PMID:22022403 MGI:5297296 NCBI chr13:31,809,686...31,815,390
Ensembl chr13:31,809,799...31,815,386 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in IMP (MGI:3826935|PMID:18832390)
(PMID:18832390)		 CACAO PMID:18832390 MGI:3826935 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IMP (MGI:4818711|PMID:20579985)
(PMID:20579985)		 DFLAT PMID:20579985 MGI:4818711 NCBI chr 3:103,647,131...103,699,210
Ensembl chr 3:103,647,131...103,698,879 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 6:38,664,447...38,853,236
Ensembl chr 6:38,671,325...38,853,099 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within IMP (PMID:28778798) MGI PMID:28778798 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within IMP (PMID:28778798) MGI PMID:28778798 NCBI chr 5:31,410,623...31,448,458
Ensembl chr 5:31,410,621...31,448,460 		JBrowse link
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (PMID:18582859) MGI PMID:18582859 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Kdm2b lysine (K)-specific demethylase 2B involved_in IMP (MGI:4949568|PMID:21220025)
(PMID:21220025)		 BHF-UCL PMID:21220025 MGI:4949568 NCBI chr 5:123,008,727...123,127,333
Ensembl chr 5:123,008,728...123,127,886 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (PMID:19653321)
(PMID:18985738)		 MGI PMID:18985738 PMID:19653321 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IGI (PMID:18653562) MGI PMID:18653562 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Sp1 trans-acting transcription factor 1 acts_upstream_of_or_within IGI (PMID:17584888) MGI PMID:17584888 NCBI chr15:102,314,751...102,344,839
Ensembl chr15:102,314,578...102,344,839 		JBrowse link
G Sp3 trans-acting transcription factor 3 acts_upstream_of_or_within IGI (PMID:17584888) MGI PMID:17584888 NCBI chr 2:72,766,774...72,810,790
Ensembl chr 2:72,766,771...72,810,790 		JBrowse link
G Tbx2 T-box 2 involved_in IMP (MGI:3487212|PMID:15459098)
(PMID:15459098)		 BHF-UCL PMID:15459098 MGI:3487212 NCBI chr11:85,723,441...85,732,774
Ensembl chr11:85,723,377...85,732,774 		JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (PMID:9811866) MGI PMID:9811866 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Th tyrosine hydroxylase involved_in IMP (MGI:3617102|PMID:16445854)
(PMID:16445854)		 BHF-UCL PMID:16445854 MGI:3617102 NCBI chr 7:142,446,516...142,453,732
Ensembl chr 7:142,446,489...142,484,865 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within IMP (PMID:18436818) MGI PMID:18436818 NCBI chr18:5,591,330...5,775,468
Ensembl chr18:5,591,860...5,775,467 		JBrowse link
embryonic cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aatf apoptosis antagonizing transcription factor acts_upstream_of IMP (PMID:11071758) MGI PMID:11071758 NCBI chr11:84,313,682...84,404,433
Ensembl chr11:84,313,681...84,404,348 		JBrowse link
G Cul3 cullin 3 involved_in IMP (MGI:5312166|PMID:22358839)
(PMID:22358839)		 UniProt PMID:22358839 MGI:5312166 NCBI chr 1:80,242,640...80,318,426
Ensembl chr 1:80,242,640...80,318,197 		JBrowse link
G Dppa3 developmental pluripotency-associated 3 acts_upstream_of_or_within IMP (PMID:15018652) MGI PMID:15018652 NCBI chr 6:122,603,383...122,607,230
Ensembl chr 6:122,603,369...122,607,231 		JBrowse link
G Ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2 acts_upstream_of_or_within IMP (PMID:9426063) MGI PMID:9426063 NCBI chr 7:19,115,942...19,129,619
Ensembl chr 7:19,115,935...19,129,619 		JBrowse link
G Gdf9 growth differentiation factor 9 involved_in ISO (PMID:24313324) AgBase PMID:24313324 NCBI chr11:53,321,773...53,328,731
Ensembl chr11:53,321,850...53,328,731 		JBrowse link
G Padi6 peptidyl arginine deiminase, type VI involved_in IDA (MGI:6508663|PMID:16137333)
(PMID:16137333)		 UniProt PMID:16137333 MGI:6508663 NCBI chr 4:140,454,666...140,469,954
Ensembl chr 4:140,454,666...140,469,954 		JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta acts_upstream_of_or_within IMP (PMID:11919689) MGI PMID:11919689 NCBI chr 9:98,920,455...99,022,264
Ensembl chr 9:98,918,707...99,022,674 		JBrowse link
G Rhoa ras homolog family member A involved_in ISO (PMID:25485583) AgBase PMID:25485583 NCBI chr 9:108,183,359...108,215,142
Ensembl chr 9:108,183,328...108,215,133 		JBrowse link
G Top1 topoisomerase (DNA) I acts_upstream_of_or_within IMP (PMID:8943335) MGI PMID:8943335 NCBI chr 2:160,487,901...160,564,684
Ensembl chr 2:160,487,808...160,564,684 		JBrowse link
G Top2a topoisomerase (DNA) II alpha acts_upstream_of_or_within IMP (PMID:11835580) MGI PMID:11835580 NCBI chr11:98,883,773...98,915,037
Ensembl chr11:98,883,769...98,915,015 		JBrowse link
G Tpra1 transmembrane protein, adipocyte asscociated 1 acts_upstream_of_or_within IMP (PMID:18459117) MGI PMID:18459117 NCBI chr 6:88,879,238...88,889,216
Ensembl chr 6:88,879,233...88,889,220 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IMP (PMID:9268572) MGI PMID:9268572 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Cdh11 cadherin 11 acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr 8:103,358,727...103,512,125
Ensembl chr 8:103,358,727...103,512,274
Ensembl chr 8:103,358,727...103,512,274
Ensembl chr 8:103,358,727...103,512,274 		JBrowse link
G Dlx1as distal-less homeobox 1, antisense acts_upstream_of_or_within IMP (PMID:23415800) MGI PMID:23415800 NCBI chr 2:71,360,982...71,368,235
Ensembl chr 2:71,346,798...71,368,252 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within IMP (PMID:7590232) MGI PMID:7590232 NCBI chr 2:71,373,752...71,377,095
Ensembl chr 2:71,373,752...71,377,098 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr11:119,179,189...119,190,869
Ensembl chr11:119,179,189...119,190,915 		JBrowse link
G Eif4a3l1 eukaryotic translation initiation factor 4A3 like 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:136,304,537...136,306,981
Ensembl chr 6:136,304,537...136,306,981 		JBrowse link
G Eif4a3l2 eukaryotic translation initiation factor 4A3 like 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:116,527,132...116,529,563
Ensembl chr 6:116,528,102...116,529,463 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IMP (PMID:9106663) MGI PMID:9106663 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within IGI
IMP		 (PMID:17525797) MGI PMID:17525797 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within IMP (PMID:15797856) MGI PMID:15797856 NCBI chr 2:174,126,113...174,188,537
Ensembl chr 2:174,126,113...174,188,537 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within IMP (PMID:21377456) MGI PMID:21377456 NCBI chr15:37,233,065...37,363,813
Ensembl chr15:37,233,280...37,363,813 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within IMP (PMID:23469164) MGI PMID:23469164 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Irx5 Iroquois homeobox 5 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 8:93,084,424...93,088,084
Ensembl chr 8:93,084,253...93,102,914 		JBrowse link
G Mmp14 matrix metallopeptidase 14 (membrane-inserted) acts_upstream_of_or_within IGI (PMID:18022611) MGI PMID:18022611 NCBI chr14:54,669,055...54,679,913
Ensembl chr14:54,669,069...54,682,821 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within IGI (PMID:18022611) MGI PMID:18022611 NCBI chr 4:17,853,072...18,117,479
Ensembl chr 4:17,852,893...18,119,145 		JBrowse link
G Nipbl NIPBL cohesin loading factor acts_upstream_of_or_within IMP (PMID:19763162) MGI PMID:19763162 NCBI chr15:8,319,308...8,494,799
Ensembl chr15:8,320,101...8,473,947 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IMP (PMID:11311163) MGI PMID:11311163 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within IMP (PMID:23349049) MGI PMID:23349049 NCBI chr 4:44,524,748...44,710,694
Ensembl chr 4:44,524,757...44,710,487 		JBrowse link
G Pdgfra platelet derived growth factor receptor, alpha polypeptide involved_in IMP
IBA		 (MGI:894516|PMID:9226440)
(PMID:9226440)		 UniProt
GO_Central		 PMID:9226440 GO_REF:0000033 MGI:894516 NCBI chr 5:75,311,988...75,358,867
Ensembl chr 5:75,312,953...75,358,876 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within IMP
IGI		 (PMID:7758948)
(PMID:9729491)		 MGI PMID:7758948 PMID:9729491 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within IGI (PMID:9729491) MGI PMID:9729491 NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263 		JBrowse link
G Runx2 runt related transcription factor 2 acts_upstream_of_or_within IGI (PMID:15030764) MGI PMID:15030764 NCBI chr17:44,806,873...45,125,518
Ensembl chr17:44,806,874...45,125,684 		JBrowse link
G Setd2 SET domain containing 2 acts_upstream_of_or_within IMP (PMID:20133625) MGI PMID:20133625 NCBI chr 9:110,361,368...110,447,703
Ensembl chr 9:110,361,665...110,447,701 		JBrowse link
G Six1 sine oculis-related homeobox 1 acts_upstream_of_or_within IGI (PMID:20515681) MGI PMID:20515681 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Six2 sine oculis-related homeobox 2 acts_upstream_of_or_within IMP (PMID:20515681) MGI PMID:20515681 NCBI chr17:85,970,276...85,995,682
Ensembl chr17:85,991,705...85,995,702 		JBrowse link
G Six4 sine oculis-related homeobox 4 acts_upstream_of_or_within IGI (PMID:20515681) MGI PMID:20515681 NCBI chr12:73,146,383...73,160,201
Ensembl chr12:73,146,383...73,160,230 		JBrowse link
G Slc39a1 solute carrier family 39 (zinc transporter), member 1 acts_upstream_of_or_within IGI
IMP		 (PMID:16652366) MGI PMID:16652366 NCBI chr 3:90,155,512...90,160,923
Ensembl chr 3:90,155,479...90,160,919 		JBrowse link
G Slc39a3 solute carrier family 39 (zinc transporter), member 3 acts_upstream_of_or_within IGI (PMID:16652366) MGI PMID:16652366 NCBI chr10:80,864,374...80,873,169
Ensembl chr10:80,864,372...80,873,260 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IGI (PMID:15183723) MGI PMID:15183723 NCBI chr18:76,369,898...76,444,819
Ensembl chr18:76,374,651...76,444,034 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IGI (PMID:15183723) MGI PMID:15183723 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276 		JBrowse link
G Tbx1 T-box 1 acts_upstream_of_or_within IMP (PMID:15190012) MGI PMID:15190012 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tbx15 T-box 15 acts_upstream_of_or_within IMP (PMID:15728667) MGI PMID:15728667 NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575 		JBrowse link
G Tfap2a transcription factor AP-2, alpha involved_in
acts_upstream_of_or_within		 IMP (MGI:80519|PMID:8622766)
(PMID:8622766)
(PMID:8622765)		 UniProt
MGI		 PMID:8622765 PMID:8622766 MGI:80519 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I acts_upstream_of_or_within IMP (PMID:16806156) MGI PMID:16806156 NCBI chr 4:47,353,258...47,414,926
Ensembl chr 4:47,353,222...47,414,931 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II involved_in IMP (MGI:2678274|PMID:12975342)
(PMID:12975342)		 BHF-UCL PMID:12975342 MGI:2678274 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 involved_in
acts_upstream_of_or_within		 IMP
ISO
IGI		 (MGI:1100098|PMID:8988167)
(PMID:8988167)
(PMID:15030764)		 BHF-UCL
GO_Central
MGI		 PMID:8988167 PMID:15030764 GO_REF:0000119 MGI:1100098 MGI:4834177 NCBI chr12:34,007,670...34,009,830
Ensembl chr12:34,007,670...34,009,828 		JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 acts_upstream_of_or_within IGI (PMID:15030764) MGI PMID:15030764 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within IMP (PMID:22228095) MGI PMID:22228095 NCBI chr 5:65,357,039...65,417,758
Ensembl chr 5:65,357,039...65,417,758 		JBrowse link
G Wnt9b wingless-type MMTV integration site family, member 9B acts_upstream_of_or_within IMP (PMID:16998816)
(PMID:16054034)		 MGI PMID:16054034 PMID:16998816 NCBI chr11:103,618,188...103,666,098
Ensembl chr11:103,618,190...103,640,647 		JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within IMP (PMID:7670465) MGI PMID:7670465 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IMP (PMID:16806149) MGI PMID:16806149 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Cxcl15 C-X-C motif chemokine ligand 15 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr 5:90,942,393...90,950,926
Ensembl chr 5:90,942,393...90,950,926 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (PMID:16308329) MGI PMID:16308329 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within IMP (PMID:16308329) MGI PMID:16308329 NCBI chr14:58,308,543...58,350,311
Ensembl chr14:58,308,004...58,350,177 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within IGI (PMID:16439479) MGI PMID:16439479 NCBI chr 8:121,811,100...121,814,883
Ensembl chr 8:121,811,125...121,814,883 		JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within IGI (PMID:16439479) MGI PMID:16439479 NCBI chr13:31,809,686...31,815,390
Ensembl chr13:31,809,799...31,815,386 		JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IMP (PMID:10693670) MGI PMID:10693670 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (PMID:10693670) MGI PMID:10693670 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Myb myeloblastosis oncogene acts_upstream_of_or_within IMP (PMID:10523863) MGI PMID:10523863 NCBI chr10:21,000,829...21,036,883
Ensembl chr10:21,000,834...21,036,883 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in IMP
ISO		 (MGI:3795695|PMID:18519639)
(PMID:18519639)		 BHF-UCL
GO_Central
MGI		 PMID:18519639 GO_REF:0000119 MGI:3795695 MGI:4834177 NCBI chr19:17,409,678...17,815,076
Ensembl chr19:17,409,683...17,814,996 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in IMP (MGI:3813934|PMID:19097194)
(PMID:19097194)		 UniProt PMID:19097194 MGI:3813934 NCBI chr17:83,522,708...83,532,496
Ensembl chr17:83,522,721...83,532,499 		JBrowse link
G Rarb retinoic acid receptor, beta involved_in ISO
IEA		 MGI
Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarres2 retinoic acid receptor responder (tazarotene induced) 2 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 6:48,546,630...48,549,778
Ensembl chr 6:48,546,630...48,549,723 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 8:89,753,867...89,770,790
Ensembl chr 8:89,753,863...89,770,790 		JBrowse link
G Sct secretin ISO RGD PMID:1711228 RGD:729899 NCBI chr 7:140,858,243...140,859,082
Ensembl chr 7:140,858,243...140,859,046 		JBrowse link
G Stra6 stimulated by retinoic acid gene 6 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 9:57,971,076...58,061,287
Ensembl chr 9:57,971,071...58,061,279 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS AgBase GO_REF:0000024 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Tnf tumor necrosis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983 		JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (PMID:15017552)
(PMID:16618415)		 MGI PMID:15017552 PMID:16618415 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IMP (PMID:16618415), (PMID:21492869)
(PMID:21550054)		 MGI PMID:16618415 PMID:21492869 PMID:21550054 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Foxf1 forkhead box F1 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 8:121,811,100...121,814,883
Ensembl chr 8:121,811,125...121,814,883 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within IMP (PMID:16127717) MGI PMID:16127717 NCBI chr14:63,436,363...63,509,161
Ensembl chr14:63,436,371...63,509,141 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (PMID:16247775) MGI PMID:16247775 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of_or_within IMP (PMID:8557196) MGI PMID:8557196 NCBI chr 1:184,459,340...184,464,690
Ensembl chr 1:184,459,337...184,464,816 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IMP (PMID:18635606) MGI PMID:18635606 NCBI chr11:83,741,035...83,796,743
Ensembl chr11:83,740,889...83,796,645 		JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in IDA (MGI:4399020|PMID:16888283)
(PMID:16888283)		 UniProt PMID:16888283 MGI:4399020 NCBI chr12:25,143,798...25,146,091
Ensembl chr12:25,143,798...25,147,139 		JBrowse link
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (PMID:10821773) MGI PMID:10821773 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr15:8,319,308...8,494,799
Ensembl chr15:8,320,101...8,473,947 		JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within IMP (PMID:16423343) MGI PMID:16423343 NCBI chr 2:144,147,095...144,174,000
Ensembl chr 2:144,147,095...144,174,066 		JBrowse link
G Pdgfra platelet derived growth factor receptor, alpha polypeptide involved_in IMP (MGI:1860627|PMID:10903171)
(PMID:10903171)		 UniProt PMID:10903171 MGI:1860627 NCBI chr 5:75,311,988...75,358,867
Ensembl chr 5:75,312,953...75,358,876 		JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 acts_upstream_of_or_within IMP (PMID:21550054) MGI PMID:21550054 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240 		JBrowse link
G Rbpms2 RNA binding protein with multiple splicing 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:65,536,638...65,567,818
Ensembl chr 9:65,536,930...65,567,810 		JBrowse link
G Shh sonic hedgehog involved_in
acts_upstream_of_or_within		 TAS
IMP		 (MGI:5306328|PMID:11001584)
(PMID:11001584)
(PMID:10821773)		 BHF-UCL
MGI		 PMID:10821773 PMID:11001584 MGI:5306328 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within IMP (PMID:16141225) MGI PMID:16141225 NCBI chr 3:66,879,056...66,889,104
Ensembl chr 3:66,879,060...66,889,104 		JBrowse link
G Six2 sine oculis-related homeobox 2 involved_in IMP (MGI:4365896|PMID:19660448)
(PMID:19660448)		 UniProt PMID:19660448 MGI:4365896 NCBI chr17:85,970,276...85,995,682
Ensembl chr17:85,991,705...85,995,702 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (MGI:3052265|PMID:15254231)
(PMID:15254231)		 UniProt PMID:15254231 MGI:3052265 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
G Tcf21 transcription factor 21 involved_in ISO
ISS		 RGD
UniProt
MGI		 PMID:11804032 GO_REF:0000024 GO_REF:0000096 MGI:4417868 RGD:727206 NCBI chr10:22,693,162...22,696,042
Ensembl chr10:22,693,180...22,696,073 		JBrowse link
G Tcf7 transcription factor 7, T cell specific acts_upstream_of_or_within IGI (PMID:15057272) MGI PMID:15057272 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box acts_upstream_of_or_within IGI (PMID:15057272) MGI PMID:15057272 NCBI chr19:55,730,227...55,922,091
Ensembl chr19:55,730,252...55,922,086 		JBrowse link
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 aristaless-like homeobox 4 acts_upstream_of_or_within IGI
IMP		 (PMID:9272948)
(PMID:9268572)		 MGI PMID:9268572 PMID:9272948 NCBI chr 2:93,472,779...93,511,686
Ensembl chr 2:93,472,729...93,511,684 		JBrowse link
G B9d1 B9 protein domain 1 acts_upstream_of_or_within IMP (PMID:22179047) MGI PMID:22179047 NCBI chr11:61,395,970...61,403,757
Ensembl chr11:61,395,970...61,403,757 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IGI (PMID:9268572) MGI PMID:9268572 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IGI (PMID:20043884) MGI PMID:20043884 NCBI chr14:34,133,018...34,225,335
Ensembl chr14:34,132,691...34,225,298 		JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within IMP (PMID:18539921) MGI PMID:18539921 NCBI chr 4:4,762,484...4,793,306
Ensembl chr 4:4,762,484...4,793,355 		JBrowse link
G C2cd3 C2 calcium-dependent domain containing 3 acts_upstream_of_or_within IMP (PMID:19004860) MGI PMID:19004860 NCBI chr 7:100,021,440...100,119,366
Ensembl chr 7:100,021,440...100,119,359 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within IMP (PMID:16079159) MGI PMID:16079159 NCBI chr10:82,820,274...83,031,738
Ensembl chr10:82,821,332...83,031,734 		JBrowse link
G Cplane1 ciliogenesis and planar polarity effector 1 acts_upstream_of_or_within IMP (PMID:25877302) MGI PMID:25877302 NCBI chr15:8,198,509...8,300,642
Ensembl chr15:8,198,590...8,300,642 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IGI
IMP		 (PMID:20043884)
(PMID:12923052)		 MGI PMID:12923052 PMID:20043884 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in ISO
IEA		 MGI
GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr 4:137,589,548...137,692,540
Ensembl chr 4:137,589,548...137,692,540 		JBrowse link
G Fbxw4 F-box and WD-40 domain protein 4 acts_upstream_of_or_within IMP (PMID:9733575)
(PMID:10471509)		 MGI PMID:9733575 PMID:10471509 NCBI chr19:45,566,693...45,648,954
Ensembl chr19:45,566,693...45,648,751 		JBrowse link
G Flvcr1 feline leukemia virus subgroup C cellular receptor 1 acts_upstream_of_or_within IMP (PMID:18258918) MGI PMID:18258918 NCBI chr 1:190,738,029...190,758,387
Ensembl chr 1:190,738,044...190,758,355 		JBrowse link
G Frem2 Fras1 related extracellular matrix protein 2 acts_upstream_of_or_within IMP (PMID:26234751) MGI PMID:26234751 NCBI chr 3:53,421,359...53,566,014
Ensembl chr 3:53,421,359...53,564,776 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within IMP (PMID:19877275)
(PMID:27158779)		 MGI PMID:19877275 PMID:27158779 NCBI chr 7:44,545,517...44,552,053
Ensembl chr 7:44,545,503...44,552,055 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within IMP
IGI		 (PMID:17504940), (PMID:17504941) MGI PMID:17504940 PMID:17504941 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within IMP (PMID:19439426) MGI PMID:19439426 NCBI chr10:56,253,297...56,266,519
Ensembl chr10:56,253,426...56,278,609 		JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IMP (PMID:19056373) MGI PMID:19056373 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP
IGI		 (PMID:16254602), (PMID:19036983), (PMID:9268572)
(PMID:17714700)
(PMID:22841643)
(PMID:9268572)		 MGI PMID:9268572 PMID:16254602 PMID:17714700 PMID:19036983 PMID:22841643 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Gna12 guanine nucleotide binding protein, alpha 12 acts_upstream_of_or_within IGI (PMID:12077299) MGI PMID:12077299 NCBI chr 5:140,745,699...140,816,186
Ensembl chr 5:140,744,163...140,816,186 		JBrowse link
G Gnaq guanine nucleotide binding protein, alpha q polypeptide acts_upstream_of_or_within IGI (PMID:12077299) MGI PMID:12077299 NCBI chr19:16,110,048...16,365,884
Ensembl chr19:16,110,195...16,364,827 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within IMP (PMID:21377456) MGI PMID:21377456 NCBI chr15:37,233,065...37,363,813
Ensembl chr15:37,233,280...37,363,813 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within IDA (PMID:12070084) MGI PMID:12070084 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668 		JBrowse link
G Hdac1 histone deacetylase 1 involved_in IGI (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr 4:129,409,897...129,436,516
Ensembl chr 4:129,409,897...129,436,506 		JBrowse link
G Hdac2 histone deacetylase 2 involved_in IGI (MGI:4889029|PMID:21093383)
(PMID:21093383)		 BHF-UCL PMID:21093383 MGI:4889029 NCBI chr10:36,850,293...36,877,885
Ensembl chr10:36,850,540...36,877,885 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within IGI (PMID:12869760) MGI PMID:12869760 NCBI chr 6:52,219,086...52,222,784
Ensembl chr 6:52,219,086...52,222,790 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within IGI (PMID:12869760) MGI PMID:12869760 NCBI chr15:102,862,961...102,865,136
Ensembl chr15:102,862,862...102,866,143 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within IGI (PMID:12869760)
(PMID:17714700)
(PMID:8900279)		 MGI PMID:8900279 PMID:12869760 PMID:17714700 NCBI chr 2:74,509,902...74,517,360
Ensembl chr 2:74,509,901...74,517,360 		JBrowse link
G Hoxd12 homeobox D12 acts_upstream_of_or_within IGI (PMID:8900279)
(PMID:17714700)		 MGI PMID:8900279 PMID:17714700 NCBI chr 2:74,505,357...74,508,049
Ensembl chr 2:74,505,357...74,508,049 		JBrowse link
G Hoxd13 homeobox D13 acts_upstream_of_or_within IGI (PMID:17714700)
(PMID:9342042)
(PMID:8900279)		 MGI PMID:8900279 PMID:9342042 PMID:17714700 NCBI chr 2:74,498,569...74,501,947
Ensembl chr 2:74,498,654...74,501,943 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within IMP (PMID:15755804) MGI PMID:15755804 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within IMP (PMID:23469164) MGI PMID:23469164 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within IMP (PMID:15930098) MGI PMID:15930098 NCBI chr 2:162,859,200...162,888,075
Ensembl chr 2:162,859,274...162,888,061 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within IMP
IGI		 (PMID:15755804), (PMID:15930098)
(PMID:19036983)
(PMID:12701101), (PMID:16254602)
(PMID:15930098)		 MGI PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393 		JBrowse link
G Ihh Indian hedgehog involved_in
acts_upstream_of_or_within		 ISO
IGI
IMP		 (PMID:20660756) MGI
GO_Central		 PMID:20660756 GO_REF:0000119 MGI:4834177 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Intu inturned planar cell polarity protein involved_in
acts_upstream_of_or_within		 ISO
IMP		 (PMID:25774014) MGI PMID:25774014 GO_REF:0000119 MGI:4834177 NCBI chr 3:40,585,559...40,659,206
Ensembl chr 3:40,585,435...40,659,204 		JBrowse link
G Lmbr1 limb region 1 acts_upstream_of_or_within IMP (PMID:11606546) MGI PMID:11606546 NCBI chr 5:29,434,800...29,583,414
Ensembl chr 5:29,481,000...29,485,295
Ensembl chr 5:29,481,000...29,485,295 		JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within IGI (PMID:9342042) MGI PMID:9342042 NCBI chr 2:74,345,180...74,409,802
Ensembl chr 2:74,350,635...74,409,779 		JBrowse link
G Lrp4 low density lipoprotein receptor-related protein 4 acts_upstream_of_or_within IMP (PMID:16517118) MGI PMID:16517118 NCBI chr 2:91,287,794...91,344,246
Ensembl chr 2:91,287,856...91,344,124 		JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 acts_upstream_of_or_within IGI (PMID:15142971) MGI PMID:15142971 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IGI
IMP		 (PMID:15142971)
(PMID:19795512)		 MGI PMID:15142971 PMID:19795512 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 2:72,115,970...72,272,954
Ensembl chr 2:72,115,981...72,272,954 		JBrowse link
G Megf8 multiple EGF-like-domains 8 acts_upstream_of_or_within IMP (PMID:32203821) MGI PMID:32203821 NCBI chr 7:25,016,589...25,065,342
Ensembl chr 7:25,016,589...25,065,342 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within IMP (PMID:21045211)
(PMID:23454480)
(PMID:19776033)		 MGI PMID:19776033 PMID:21045211 PMID:23454480 NCBI chr11:87,744,007...87,754,629
Ensembl chr11:87,744,041...87,754,629 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within IGI (PMID:21465616) MGI PMID:21465616 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IGI (PMID:21465616) MGI PMID:21465616 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110 		JBrowse link
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived acts_upstream_of_or_within IMP (PMID:17360777) MGI PMID:17360777 NCBI chr12:12,986,094...12,991,837
Ensembl chr12:12,986,094...12,991,915 		JBrowse link
G Nog noggin involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IGI (MGI:4950000|PMID:21262216)
(PMID:21262216)		 BHF-UCL PMID:21262216 MGI:4950000 NCBI chr12:9,624,442...9,631,500
Ensembl chr12:9,620,116...9,631,500 		JBrowse link
G Osr2 odd-skipped related 2 involved_in IGI (MGI:4950000|PMID:21262216) BHF-UCL PMID:21262216 MGI:4950000 NCBI chr15:35,296,244...35,303,451
Ensembl chr15:35,296,244...35,303,451 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IMP (PMID:23913870) MGI PMID:23913870 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772 		JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within IMP (PMID:15755804), (PMID:9636176) MGI PMID:9636176 PMID:15755804 NCBI chr 1:33,758,991...33,781,642
Ensembl chr 1:33,758,968...33,781,645 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within IGI
IMP		 (PMID:20660756) MGI PMID:20660756 NCBI chr13:53,263,353...53,440,160
Ensembl chr13:53,263,348...53,440,160 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in IMP
ISO		 (MGI:4461128|PMID:18470945)
(PMID:18470945)		 UniProt
GO_Central
MGI		 PMID:18470945 GO_REF:0000119 MGI:4461128 MGI:4834177 NCBI chr 8:89,753,867...89,770,790
Ensembl chr 8:89,753,863...89,770,790 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IMP (PMID:18729207) MGI PMID:18729207 NCBI chr 3:83,673,628...83,681,621
Ensembl chr 3:83,673,628...83,681,623 		JBrowse link
G Shh sonic hedgehog involved_in
acts_upstream_of_or_within		 IMP
IGI		 (MGI:5559673|PMID:11044396)
(PMID:11044396)
(PMID:20660756)
(PMID:17504940), (PMID:17504941)
(PMID:15930098)		 Roslin_Institute
MGI		 PMID:11044396 PMID:15930098 PMID:17504940 PMID:17504941 PMID:20660756 MGI:5559673 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Smad4 SMAD family member 4 involved_in IMP (MGI:5444318|PMID:23034633) CACAO PMID:23034633 MGI:5444318 NCBI chr18:73,767,861...73,836,862
Ensembl chr18:73,772,080...73,836,851 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IMP (PMID:20159594) MGI PMID:20159594 NCBI chr10:55,890,389...56,106,495
Ensembl chr10:55,890,389...56,104,785 		JBrowse link
G Tbx2 T-box 2 involved_in IMP (MGI:3487212|PMID:15459098)
(PMID:15459098)		 BHF-UCL PMID:15459098 MGI:3487212 NCBI chr11:85,723,441...85,732,774
Ensembl chr11:85,723,377...85,732,774 		JBrowse link
G Tbx3 T-box 3 involved_in
acts_upstream_of_or_within		 ISO
IMP		 (PMID:23844108)
(PMID:27046536)		 MGI
GO_Central		 PMID:23844108 PMID:27046536 GO_REF:0000119 MGI:4834177 NCBI chr 5:119,808,600...119,822,789
Ensembl chr 5:119,808,734...119,822,789 		JBrowse link
G Tmem107 transmembrane protein 107 involved_in IMP (MGI:5432629|PMID:22698544)
(PMID:22698544)		 UniProt PMID:22698544 MGI:5432629 NCBI chr11:68,961,635...68,964,119
Ensembl chr11:68,961,632...68,964,119 		JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within IMP (PMID:22179047) MGI PMID:22179047 NCBI chr 8:112,638,639...112,660,445
Ensembl chr 8:112,638,643...112,660,513 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within IMP (PMID:21945076) MGI PMID:21945076 NCBI chr 1:91,422,311...91,457,029
Ensembl chr 1:91,422,369...91,457,029 		JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within IMP (PMID:23141541) MGI PMID:23141541 NCBI chr 2:120,563,297...120,681,111
Ensembl chr 2:120,563,297...120,681,085 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IMP (PMID:19286674), (PMID:19334287) MGI PMID:19286674 PMID:19334287 NCBI chr 6:128,298,103...128,332,833
Ensembl chr 6:128,298,124...128,332,814 		JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 acts_upstream_of_or_within IMP (PMID:15030764) MGI PMID:15030764 NCBI chr12:34,007,670...34,009,830
Ensembl chr12:34,007,670...34,009,828 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within		 ISO
IMP		 (PMID:24302887) MGI PMID:24302887 GO_REF:0000119 MGI:4834177 NCBI chr11:21,521,969...21,848,686
Ensembl chr11:21,522,235...21,848,989 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IMP (PMID:19795512) MGI PMID:19795512 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
G Wnt7a wingless-type MMTV integration site family, member 7A involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:91,340,963...91,388,335
Ensembl chr 6:91,340,963...91,388,345 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in ISO RGD
GO_Central
MGI		 PMID:19191224 GO_REF:0000096 MGI:4417868 RGD:2312786 NCBI chr 9:48,563,097...48,747,525
Ensembl chr 9:48,565,597...48,747,522 		JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps52 VPS52 GARP complex subunit acts_upstream_of_or_within IMP (PMID:23142660) MGI PMID:23142660 NCBI chr17:34,174,753...34,186,012
Ensembl chr17:34,174,786...34,186,009 		JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 involved_in ISO
IEA		 MGI
Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr 8:121,811,100...121,814,883
Ensembl chr 8:121,811,125...121,814,883 		JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ret ret proto-oncogene acts_upstream_of_or_within IGI (PMID:15569713) MGI PMID:15569713 NCBI chr 6:118,128,709...118,174,705
Ensembl chr 6:118,128,706...118,174,679 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within IGI (PMID:15569713) MGI PMID:15569713 NCBI chr15:89,376,929...89,444,464
Ensembl chr15:89,383,826...89,444,464 		JBrowse link
G Wnt4 wingless-type MMTV integration site family, member 4 acts_upstream_of_or_within IDA (PMID:16546160) MGI PMID:16546160 NCBI chr 4:137,004,946...137,026,812
Ensembl chr 4:137,004,800...137,027,037 		JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 acts_upstream_of_or_within IGI (PMID:16207763), (PMID:16611695) MGI PMID:16207763 PMID:16611695 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 acts_upstream_of_or_within IMP
IGI		 (PMID:16611695)
(PMID:16207763)
(PMID:16207763), (PMID:16611695)		 MGI PMID:16207763 PMID:16611695 NCBI chr 7:66,040,640...66,077,225
Ensembl chr 7:66,040,638...66,077,265 		JBrowse link
G Efemp1 epidermal growth factor-containing fibulin-like extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr11:28,803,154...28,876,743
Ensembl chr11:28,803,204...28,876,743 		JBrowse link
G Fbn1 fibrillin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:125,142,514...125,348,417
Ensembl chr 2:125,142,514...125,349,913 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr18:58,141,689...58,343,200
Ensembl chr18:58,141,695...58,343,559 		JBrowse link
G Foxl2 forkhead box L2 acts_upstream_of_or_within IMP (PMID:15056605) MGI PMID:15056605 NCBI chr 9:98,837,495...98,840,601
Ensembl chr 9:98,837,341...98,840,596 		JBrowse link
G Mfap2 microfibrillar-associated protein 2 involved_in IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:140,737,735...140,743,284
Ensembl chr 4:140,737,729...140,743,295 		JBrowse link
G Mfap5 microfibrillar associated protein 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:122,490,543...122,506,249
Ensembl chr 6:122,482,804...122,506,249 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within IGI (PMID:16207763) MGI PMID:16207763 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IGI (PMID:16207763) MGI PMID:16207763 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within IDA
IMP		 (PMID:10595508)
(PMID:11830579)		 MGI PMID:10595508 PMID:11830579 NCBI chr 6:83,688,221...83,715,295
Ensembl chr 6:83,688,246...83,715,295 		JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin receptor IIB acts_upstream_of_or_within IMP (PMID:10921901) MGI PMID:10921901 NCBI chr 9:119,231,081...119,271,214
Ensembl chr 9:119,231,184...119,264,061 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IMP (PMID:18692041) MGI PMID:18692041 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IMP (PMID:18794329) MGI PMID:18794329 NCBI chr 1:119,472,762...119,576,826
Ensembl chr 1:119,472,767...119,576,730 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within IMP (PMID:11493558) MGI PMID:11493558 NCBI chr 8:121,811,100...121,814,883
Ensembl chr 8:121,811,125...121,814,883 		JBrowse link
G Foxp4 forkhead box P4 acts_upstream_of_or_within IMP (PMID:15361625) MGI PMID:15361625 NCBI chr17:48,178,058...48,235,401
Ensembl chr17:48,178,058...48,235,570 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within IMP (PMID:9136933)
(PMID:9136932)		 MGI PMID:9136932 PMID:9136933 NCBI chr14:63,436,363...63,509,161
Ensembl chr14:63,436,371...63,509,141 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IMP (PMID:16831833) MGI PMID:16831833 NCBI chr 2:80,330,856...80,411,526
Ensembl chr 2:80,330,856...80,411,724 		JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (PMID:9731532) MGI PMID:9731532 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IGI (PMID:15183723) MGI PMID:15183723 NCBI chr18:76,369,898...76,444,819
Ensembl chr18:76,374,651...76,444,034 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IGI (PMID:15183723) MGI PMID:15183723 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276 		JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 involved_in
acts_upstream_of_or_within		 IMP (MGI:4946573|PMID:21305474)
(PMID:18462699)
(PMID:19619492)		 BHF-UCL
MGI		 PMID:18462699 PMID:19619492 PMID:21305474 MGI:4946573 NCBI chr 1:4,561,154...4,567,624
Ensembl chr 1:4,561,154...4,567,577 		JBrowse link
embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IMP (PMID:15069081), (PMID:20034106) MGI PMID:15069081 PMID:20034106 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Alx3 aristaless-like homeobox 3 acts_upstream_of_or_within IGI (PMID:11641221) MGI PMID:11641221 NCBI chr 3:107,502,347...107,513,191
Ensembl chr 3:107,502,347...107,513,092 		JBrowse link
G Alx4 aristaless-like homeobox 4 acts_upstream_of_or_within IGI (PMID:11641221) MGI PMID:11641221 NCBI chr 2:93,472,779...93,511,686
Ensembl chr 2:93,472,729...93,511,684 		JBrowse link
G Cacna1c calcium channel, voltage-dependent, L type, alpha 1C subunit involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 6:118,564,201...119,174,345
Ensembl chr 6:118,564,201...119,173,851 		JBrowse link
G Crabp2 cellular retinoic acid binding protein II acts_upstream_of_or_within IMP (PMID:7720575) MGI PMID:7720575 NCBI chr 3:87,856,000...87,860,679
Ensembl chr 3:87,855,973...87,860,683 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IDA (PMID:15371327) MGI PMID:15371327 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G En1 engrailed 1 acts_upstream_of_or_within IGI (PMID:9362463) MGI PMID:9362463 NCBI chr 1:120,530,246...120,535,719
Ensembl chr 1:120,530,147...120,535,721 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within IGI (PMID:22916278) MGI PMID:22916278 NCBI chr 6:52,219,086...52,222,784
Ensembl chr 6:52,219,086...52,222,790 		JBrowse link
G Hoxa13 homeobox A13 acts_upstream_of_or_within IMP (PMID:15733672) MGI PMID:15733672 NCBI chr 6:52,235,833...52,237,865
Ensembl chr 6:52,234,674...52,237,788 		JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within IGI (PMID:8625797) MGI PMID:8625797 NCBI chr 6:52,200,077...52,203,169
Ensembl chr 6:52,200,080...52,208,069 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within IGI (PMID:22916278) MGI PMID:22916278 NCBI chr 2:74,509,902...74,517,360
Ensembl chr 2:74,509,901...74,517,360 		JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within IGI
IMP		 (PMID:8625797) MGI PMID:8625797 NCBI chr 2:74,528,107...74,530,552
Ensembl chr 2:74,528,071...74,530,552 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in IMP (MGI:4888042|PMID:21209331)
(PMID:21209331)		 BHF-UCL PMID:21209331 MGI:4888042 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660 		JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within IMP (PMID:9342042)
(PMID:22916278)		 MGI PMID:9342042 PMID:22916278 NCBI chr 2:74,345,180...74,409,802
Ensembl chr 2:74,350,635...74,409,779 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP
IGI		 (PMID:11029008)
(PMID:15880584)
(PMID:19653321)
(PMID:18256198)		 MGI PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within IMP (PMID:17029558) MGI PMID:17029558 NCBI chr 3:30,005,445...30,563,937
Ensembl chr 3:30,005,445...30,602,157 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within IGI (PMID:21465616) MGI PMID:21465616 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IGI (PMID:21465616) MGI PMID:21465616 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO
IEA		 MGI
Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr15:8,319,308...8,494,799
Ensembl chr15:8,320,101...8,473,947 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IGI (MGI:4950000|PMID:21262216)
(PMID:21262216)		 BHF-UCL PMID:21262216 MGI:4950000 NCBI chr12:9,624,442...9,631,500
Ensembl chr12:9,620,116...9,631,500 		JBrowse link
G Osr2 odd-skipped related 2 involved_in IGI
IEP		 (MGI:4950000|PMID:21262216)
(PMID:21262216)
(MGI:2149941|PMID:11520675)		 BHF-UCL
UniProt		 PMID:11520675 PMID:21262216 MGI:2149941 MGI:4950000 NCBI chr15:35,296,244...35,303,451
Ensembl chr15:35,296,244...35,303,451 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) acts_upstream_of_or_within IMP (PMID:17473173) MGI PMID:17473173 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Reck reversion-inducing-cysteine-rich protein with kazal motifs acts_upstream_of_or_within IMP (PMID:23213437) MGI PMID:23213437 NCBI chr 4:43,875,521...43,944,806
Ensembl chr 4:43,875,530...43,944,806 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within IMP (PMID:17553904) MGI PMID:17553904 NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within IGI
IMP		 (PMID:18256198) MGI PMID:18256198 NCBI chr15:42,884,184...43,034,990
Ensembl chr15:42,884,190...43,034,222 		JBrowse link
G Runx2 runt related transcription factor 2 acts_upstream_of_or_within IMP (PMID:22916278) MGI PMID:22916278 NCBI chr17:44,806,873...45,125,518
Ensembl chr17:44,806,874...45,125,684 		JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (PMID:11118883), (PMID:11476582) MGI PMID:11118883 PMID:11476582 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within IMP (PMID:22916278) MGI PMID:22916278 NCBI chr 3:66,879,056...66,889,104
Ensembl chr 3:66,879,060...66,889,104 		JBrowse link
G Tbx3 T-box 3 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr 5:119,808,600...119,822,789
Ensembl chr 5:119,808,734...119,822,789 		JBrowse link
G Tbx5 T-box 5 involved_in
acts_upstream_of_or_within		 ISO
IMP		 (PMID:11572777), (PMID:12490567) MGI
GO_Central		 PMID:11572777 PMID:12490567 GO_REF:0000119 MGI:4834177 NCBI chr 5:119,934,581...120,023,285
Ensembl chr 5:119,970,733...120,023,284 		JBrowse link
G Tfap2a transcription factor AP-2, alpha involved_in IMP (MGI:1313057|PMID:9811866)
(PMID:9811866)		 UniProt PMID:9811866 MGI:1313057 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Trp63 transformation related protein 63 acts_upstream_of_or_within IMP (PMID:25503409) MGI PMID:25503409 NCBI chr16:25,502,513...25,710,842
Ensembl chr16:25,502,513...25,710,852 		JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 acts_upstream_of_or_within IMP (PMID:12175489) MGI PMID:12175489 NCBI chr12:34,007,670...34,009,830
Ensembl chr12:34,007,670...34,009,828 		JBrowse link
G Wnt3 wingless-type MMTV integration site family, member 3 acts_upstream_of_or_within IMP (PMID:12569130) MGI PMID:12569130 NCBI chr11:103,665,000...103,708,854
Ensembl chr11:103,664,976...103,708,783 		JBrowse link
G Wnt7a wingless-type MMTV integration site family, member 7A acts_upstream_of_or_within
involved_in		 IMP
ISO
IGI		 (PMID:9362463)
(PMID:15880584)		 MGI
GO_Central		 PMID:9362463 PMID:15880584 GO_REF:0000119 MGI:4834177 MGI:48652 NCBI chr 6:91,340,963...91,388,335
Ensembl chr 6:91,340,963...91,388,345 		JBrowse link
G Wnt9a wingless-type MMTV integration site family, member 9A acts_upstream_of_or_within IDA (PMID:15371327) MGI PMID:15371327 NCBI chr11:59,197,675...59,224,378
Ensembl chr11:59,197,754...59,224,378 		JBrowse link
embryonic genitalia morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (PMID:12004962) MGI PMID:12004962 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within IMP (PMID:14745966) MGI PMID:14745966 NCBI chr13:53,263,353...53,440,160
Ensembl chr13:53,263,348...53,440,160 		JBrowse link
G Tcf7 transcription factor 7, T cell specific acts_upstream_of_or_within IGI (PMID:15057272) MGI PMID:15057272 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box acts_upstream_of_or_within IGI (PMID:15057272) MGI PMID:15057272 NCBI chr19:55,730,227...55,922,091
Ensembl chr19:55,730,252...55,922,086 		JBrowse link
embryonic heart tube development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apela apelin receptor early endogenous ligand involved_in IMP (MGI:5909243|PMID:28854362), (MGI:5913613|PMID:28663440) UniProt PMID:28663440 PMID:28854362 MGI:5909243 MGI:5913613 NCBI chr 8:65,481,069...65,489,970
Ensembl chr 8:65,481,069...65,489,988 		JBrowse link
G Cdc42 cell division cycle 42 involved_in IMP (PMID:31219639) MGI PMID:31219639 NCBI chr 4:137,047,011...137,085,007
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G Chrd chordin involved_in IMP (PMID:17685487) MGI PMID:17685487 NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IMP (PMID:18231602) MGI PMID:18231602 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in IMP (PMID:30735130) MGI PMID:30735130 NCBI chr 4:137,589,548...137,692,540
Ensembl chr 4:137,589,548...137,692,540 		JBrowse link
G Edn1 endothelin 1 involved_in IMP (PMID:24875861), (PMID:31219639)
(PMID:30735130)		 MGI PMID:24875861 PMID:30735130 PMID:31219639 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466 		JBrowse link
G Ednra endothelin receptor type A involved_in IMP
IGI		 (PMID:20929948)
(PMID:24875861)
(PMID:30735130)
(PMID:24875861), (PMID:31219639)		 MGI PMID:20929948 PMID:24875861 PMID:30735130 PMID:31219639 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IMP (PMID:16720879) MGI PMID:16720879 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within IGI (PMID:16678147) MGI PMID:16678147 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IGI (PMID:16678147) MGI PMID:16678147 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within IMP (PMID:9136932)
(PMID:9136933)		 MGI PMID:9136932 PMID:9136933 NCBI chr14:63,436,363...63,509,161
Ensembl chr14:63,436,371...63,509,141 		JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within IMP (PMID:14732399) MGI PMID:14732399 NCBI chr10:56,253,297...56,266,519
Ensembl chr10:56,253,426...56,278,609 		JBrowse link
G Gja5 gap junction protein, alpha 5 acts_upstream_of_or_within IMP (PMID:22203979)
(PMID:14732399)		 MGI PMID:14732399 PMID:22203979 NCBI chr 3:96,939,718...96,960,950
Ensembl chr 3:96,812,009...96,984,732 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within IMP (PMID:9500551) MGI PMID:9500551 NCBI chr11:57,719,539...57,722,973
Ensembl chr11:57,719,531...57,723,644 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within IMP (PMID:15459110) MGI PMID:15459110 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in IMP (MGI:3827087|PMID:19000668)
(PMID:19000668)		 UniProt PMID:19000668 MGI:3827087 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within IMP (PMID:14500757) MGI PMID:14500757 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in IMP
IGI		 (PMID:30735130) MGI PMID:30735130 NCBI chr13:83,652,136...83,815,197
Ensembl chr13:83,652,153...83,815,199 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IMP (PMID:16831833) MGI PMID:16831833 NCBI chr 2:80,330,856...80,411,526
Ensembl chr 2:80,330,856...80,411,724 		JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within IGI (PMID:15843414) MGI PMID:15843414 NCBI chr17:27,057,638...27,063,962
Ensembl chr17:27,057,638...27,063,983 		JBrowse link
G Nkx2-6 NK2 homeobox 6 involved_in IEP
ISO		 (MGI:3828420|PMID:9545560) BHF-UCL
GO_Central
MGI		 PMID:9545560 GO_REF:0000119 MGI:3828420 MGI:4834177 NCBI chr14:69,409,251...69,412,989
Ensembl chr14:69,409,251...69,412,967 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IMP (PMID:11311163) MGI PMID:11311163 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Pcnt pericentrin (kendrin) acts_upstream_of_or_within IMP (PMID:25220058) MGI PMID:25220058 NCBI chr10:76,187,098...76,279,988
Ensembl chr10:76,187,097...76,278,620 		JBrowse link
G Plxna4 plexin A4 involved_in IMP
IGI		 (PMID:30735130) MGI PMID:30735130 NCBI chr 6:32,121,478...32,565,127
Ensembl chr 6:32,121,203...32,565,127 		JBrowse link
G Slc8a1 solute carrier family 8 (sodium/calcium exchanger), member 1 acts_upstream_of_or_within IMP (PMID:21302256) MGI PMID:21302256 NCBI chr17:81,680,534...82,045,816
Ensembl chr17:81,680,534...82,045,806 		JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 acts_upstream_of_or_within IGI (PMID:17610846) MGI PMID:17610846 NCBI chr 1:4,561,154...4,567,624
Ensembl chr 1:4,561,154...4,567,577 		JBrowse link
G Sox18 SRY (sex determining region Y)-box 18 acts_upstream_of_or_within IGI (PMID:17610846) MGI PMID:17610846 NCBI chr 2:181,311,630...181,313,433
Ensembl chr 2:181,311,629...181,313,433 		JBrowse link
G Tbx20 T-box 20 acts_upstream_of_or_within IMP
IGI		 (PMID:15843414) MGI PMID:15843414 NCBI chr 9:24,632,108...24,685,580
Ensembl chr 9:24,629,434...24,685,599 		JBrowse link
G Tbx3 T-box 3 acts_upstream_of_or_within IMP (PMID:23844108) MGI PMID:23844108 NCBI chr 5:119,808,600...119,822,789
Ensembl chr 5:119,808,734...119,822,789 		JBrowse link
G Tmem94 transmembrane protein 94 acts_upstream_of_or_within IMP (PMID:30526868) MGI PMID:30526868 NCBI chr11:115,656,245...115,689,859
Ensembl chr11:115,656,259...115,690,192 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within IMP (PMID:21945076) MGI PMID:21945076 NCBI chr 1:91,422,311...91,457,029
Ensembl chr 1:91,422,369...91,457,029 		JBrowse link
embryonic heart tube elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx20 T-box 20 involved_in IMP (MGI:3579960|PMID:15901664)
(PMID:15901664)		 BHF-UCL PMID:15901664 MGI:3579960