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ONTOLOGY REPORT - ANNOTATIONS

Term:embryo development
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Accession:GO:0009790 term browser browse the term
Definition:The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
Synonyms:exact_synonym: embryogenesis;   embryonal development
 broad_synonym: embryogenesis and morphogenesis
 alt_id: GO:0009795
 xref: Wikipedia:Embryogenesis

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anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASP3 caspase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21515572) Ensembl
MGI		 PMID:21515572 GO_REF:0000107 NCBI chr 7:130,589,592...130,610,845
Ensembl chr 7:130,591,166...130,610,899 		JBrowse link
G FOLR1 folate receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:63,405,513...63,413,372
Ensembl chr 1:63,406,597...63,413,352 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21515572) MGI PMID:21515572 NCBI chr 8:96,340,459...96,526,366
Ensembl chr 8:96,342,189...96,526,363 		JBrowse link
G SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like acts_upstream_of_or_within ISO (PMID:26787558) MGI PMID:26787558 NCBI chr19:7,488,821...7,539,961
Ensembl chr19:7,488,832...7,539,952 		JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATAD2A GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chr 6:17,847,310...17,971,219
Ensembl chr 6:17,847,307...17,971,220 		JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:8622765) MGI PMID:8622765 NCBI chr17:61,750,757...61,769,041 JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRIPTO cripto, EGF-CFC family member acts_upstream_of_or_within ISO (PMID:9790191) MGI PMID:9790191 NCBI chr22:7,993,724...8,000,935
Ensembl chr22:7,997,383...8,000,629 		JBrowse link
G FRS2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15870281) Ensembl
MGI		 PMID:15870281 GO_REF:0000107 NCBI chr11:65,097,789...65,208,373
Ensembl chr11:65,197,385...65,208,379 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:93,545,792...93,553,092
Ensembl chr10:93,550,189...93,551,946 		JBrowse link
G TASOR transcription activation suppressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:17,957,264...18,020,887
Ensembl chr22:17,960,845...18,020,653 		JBrowse link
G TBX3 T-box transcription factor 3 involved_in ISO (PMID:9207801) UniProt PMID:9207801 NCBI chr11:109,952,100...109,966,328
Ensembl chr11:109,952,054...109,965,065 		JBrowse link
G TCF7L1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (PMID:14668413) MGI PMID:14668413 NCBI chr14:21,849,585...22,028,147 JBrowse link
G WNT5A Wnt family member 5A involved_in ISO (MGI:4835157|PMID:9054360)
(PMID:9054360)		 BHF-UCL PMID:9054360 MGI:4835157 NCBI chr22:16,809,454...16,836,815
Ensembl chr22:16,809,451...16,825,048 		JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:15967824) MGI PMID:15967824 NCBI chr 6:42,186,028...42,193,105 JBrowse link
G BAX BCL2 associated X, apoptosis regulator involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:42,186,238...42,194,115 JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within ISO (PMID:15967824) MGI PMID:15967824 NCBI chr14:14,178,159...14,205,337 JBrowse link
G BCL2L11 BCL2 like 11 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr14:14,176,417...14,208,805 JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16245338) MGI PMID:16245338 NCBI chr12:1,656,815...1,707,566
Ensembl chr12:1,656,918...1,709,585 		JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chr28:15,583,609...15,610,753
Ensembl chr28:15,583,516...15,610,328 		JBrowse link
G SCRIB scribble planar cell polarity protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20215345) Ensembl
MGI		 PMID:20215345 GO_REF:0000107 NCBI chr 8:138,008,722...138,033,874
Ensembl chr 8:138,008,579...138,033,843 		JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20215345) Ensembl
MGI		 PMID:20215345 GO_REF:0000107 NCBI chr 7:57,363,133...57,463,056
Ensembl chr 7:57,387,167...57,462,276 		JBrowse link
G SLITRK6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:19936227) MGI PMID:19936227 NCBI chr 3:64,808,716...64,822,519
Ensembl chr 3:64,809,920...64,812,442 		JBrowse link
G WDPCP WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO (PMID:24302887) MGI PMID:24302887 NCBI chr14:43,425,405...43,896,015
Ensembl chr14:43,526,525...43,898,300 		JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD24 ankyrin repeat domain 24 involved_in ISO (MGI:6885507|PMID:35175278)
(PMID:35175278)		 UniProt PMID:35175278 MGI:6885507 NCBI chr 6:3,932,677...3,972,476
Ensembl chr 6:3,949,211...3,972,176 		JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:11875276) MGI PMID:11875276 NCBI chr22:46,360,306...46,742,446
Ensembl chr22:46,368,243...46,662,220 		JBrowse link
G CLIC5 chloride intracellular channel 5 acts_upstream_of_or_within ISO (PMID:17021174) MGI PMID:17021174 NCBI chr17:26,231,192...26,364,076
Ensembl chr17:26,231,728...26,343,346 		JBrowse link
G CLRN1 clarin 1 acts_upstream_of_or_within ISO (PMID:19414487), (PMID:19423712) MGI PMID:19414487 PMID:19423712 NCBI chr15:39,713,439...39,761,647
Ensembl chr15:39,717,716...39,761,306 		JBrowse link
G CLRN2 clarin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:32,681,525...32,695,858
Ensembl chr27:32,682,435...32,694,564 		JBrowse link
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30380417) Ensembl
MGI		 PMID:30380417 GO_REF:0000107 NCBI chr23:48,443,668...48,457,079
Ensembl chr23:48,443,748...48,456,614 		JBrowse link
G LHFPL5 LHFPL tetraspan subfamily member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17876667), (PMID:23217710)
(PMID:15905332)		 Ensembl
MGI		 PMID:15905332 PMID:17876667 PMID:23217710 GO_REF:0000107 NCBI chr17:36,295,612...36,313,964
Ensembl chr17:36,298,479...36,313,490 		JBrowse link
G LOC103216037 cadherin-23 acts_upstream_of_or_within ISO (PMID:7610888), (PMID:8790740), (PMID:9039475)
(PMID:12121736)
(PMID:15537665)
(PMID:11322776)
(PMID:11138008), (PMID:17050716), (PMID:23217710)		 MGI PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... NCBI chr 9:59,475,126...59,893,824 JBrowse link
G LOC103245735 stereocilin involved_in
acts_upstream_of_or_within		 ISO (MGI:5430850|PMID:21165971)
(PMID:21165971)
(PMID:18849963)
(PMID:30801007)		 UniProt
MGI		 PMID:18849963 PMID:21165971 PMID:30801007 MGI:5430850 NCBI chr26:39,376,441...39,397,613
Ensembl chr26:39,378,318...39,401,072 		JBrowse link
G LOC103248666 tubulin-specific chaperone cofactor E-like protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30801007) Ensembl
MGI		 PMID:30801007 GO_REF:0000107 NCBI chr 1:112,520,859...112,611,756
Ensembl chr 1:112,450,183...112,511,647
Ensembl chr 1:112,450,183...112,511,647 		JBrowse link
G MYO3A myosin IIIA involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chr 9:25,635,918...25,902,552 JBrowse link
G MYO3B myosin IIIB involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chr10:55,710,658...56,184,514 JBrowse link
G MYO7A myosin VIIA acts_upstream_of_or_within ISO (PMID:17050716)
(PMID:11753415)
(PMID:12121736)		 MGI PMID:11753415 PMID:12121736 PMID:17050716 NCBI chr 1:68,334,781...68,423,215
Ensembl chr 1:68,350,598...68,425,625 		JBrowse link
G NHERF1 NHERF family PDZ scaffold protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24920589) Ensembl
MGI		 PMID:24920589 GO_REF:0000107 NCBI chr16:46,889,454...46,910,776
Ensembl chr16:46,888,942...46,910,842 		JBrowse link
G PCDH15 protocadherin related 15 acts_upstream_of_or_within ISO (PMID:15537665)
(PMID:23217710)
(PMID:16887306)
(PMID:10978835)
(PMID:11124469)		 MGI PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 NCBI chr 9:75,642,985...77,415,370
Ensembl chr 9:76,726,627...77,398,716 		JBrowse link
G PDZD7 PDZ domain containing 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24334608) MGI
TreeGrafter		 PMID:24334608 GO_REF:0000118 NCBI chr 9:94,026,036...94,049,043 JBrowse link
G PLS1 plastin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:47,919,807...48,031,158
Ensembl chr15:47,919,823...48,003,805 		JBrowse link
G REST RE1 silencing transcription factor involved_in ISO (MGI:6193260|PMID:29961578)
(PMID:29961578)		 UniProt PMID:29961578 MGI:6193260 NCBI chr 7:11,749,312...11,776,103
Ensembl chr 7:11,749,168...11,773,340 		JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:47,197,067...47,441,413
Ensembl chr17:47,308,984...47,451,779 		JBrowse link
G SCRIB scribble planar cell polarity protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20215345) Ensembl
MGI		 PMID:20215345 GO_REF:0000107 NCBI chr 8:138,008,722...138,033,874
Ensembl chr 8:138,008,579...138,033,843 		JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20215345) Ensembl
MGI		 PMID:20215345 GO_REF:0000107 NCBI chr 7:57,363,133...57,463,056
Ensembl chr 7:57,387,167...57,462,276 		JBrowse link
G SOD1 superoxide dismutase 1 acts_upstream_of_or_within ISO (PMID:10464373), (PMID:10466888) MGI PMID:10464373 PMID:10466888 NCBI chr 2:60,461,219...60,472,999 JBrowse link
G TPRN taperin acts_upstream_of_or_within ISO (PMID:30380417) MGI PMID:30380417 NCBI chr12:988,225...997,914 JBrowse link
G TPRN taperin involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr12:989,400...997,918 JBrowse link
G TRIOBP TRIO and F-actin binding protein acts_upstream_of_or_within ISO (PMID:20510926) MGI PMID:20510926 NCBI chr19:20,447,340...20,476,669 JBrowse link
G TRIOBP TRIO and F-actin binding protein involved_in IEA Ensembl GO_REF:0000107 Ensembl chr19:20,404,089...20,470,706 JBrowse link
G WHRN whirlin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:27117407) MGI
TreeGrafter		 PMID:27117407 GO_REF:0000118 NCBI chr12:25,087,286...25,189,982
Ensembl chr12:25,087,295...25,189,985 		JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within ISO (PMID:9230313) MGI PMID:9230313 NCBI chr 5:233,520...295,134
Ensembl chr 5:234,060...290,575 		JBrowse link
G EPHA2 EPH receptor A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11287184) Ensembl
MGI		 PMID:11287184 GO_REF:0000107 NCBI chr20:116,147,077...116,178,647
Ensembl chr20:116,147,040...116,178,644 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:14511481) MGI PMID:14511481 NCBI chr 9:60,852,567...60,863,225
Ensembl chr 9:60,853,763...60,862,839 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chr11:12,016,542...12,170,496
Ensembl chr11:12,021,560...12,170,663 		JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20630950) Ensembl
MGI		 PMID:20630950 GO_REF:0000107 NCBI chr  X:60,915,796...60,939,220
Ensembl chr  X:60,915,703...60,937,677 		JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chr25:1,664,316...1,675,006
Ensembl chr25:1,666,053...1,719,881 		JBrowse link
blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1B1 ATPase Na+/K+ transporting subunit beta 1 acts_upstream_of_or_within ISO MGI MGI:1888635 NCBI chr25:59,898,745...59,925,166
Ensembl chr25:59,895,341...59,925,522 		JBrowse link
G BNIP2 BCL2 interacting protein 2 acts_upstream_of_or_within ISO (PMID:19117032) MGI PMID:19117032 NCBI chr26:23,821,350...23,846,130
Ensembl chr26:23,821,499...23,855,741 		JBrowse link
G CAPN2 calpain 2 acts_upstream_of_or_within ISO (PMID:16433929) MGI PMID:16433929 NCBI chr25:5,845,873...5,905,464
Ensembl chr25:5,846,298...5,905,402 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15788452) Ensembl
MGI		 PMID:15788452 GO_REF:0000107 NCBI chr 3:7,080,142...7,088,010
Ensembl chr 3:7,078,503...7,087,285 		JBrowse link
G DAD1 defender against cell death 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10748466) Ensembl
MGI		 PMID:10748466 GO_REF:0000107 NCBI chr29:22,935,231...22,958,331
Ensembl chr29:22,935,005...22,958,414 		JBrowse link
G DMBT1 deleted in malignant brain tumors 1 acts_upstream_of_or_within ISO (PMID:15452149) MGI PMID:15452149 NCBI chr 9:115,344,861...115,346,308 JBrowse link
G ELF3 E74 like ETS transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16630543) Ensembl
MGI		 PMID:16630543 GO_REF:0000107 NCBI chr25:27,390,707...27,398,312
Ensembl chr25:27,390,809...27,397,441 		JBrowse link
G EMG1 EMG1 N1-specific pseudouridine methyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20858271) Ensembl
MGI		 PMID:20858271 GO_REF:0000107 NCBI chr11:7,004,507...7,009,702
Ensembl chr11:7,004,645...7,009,527 		JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within ISO (PMID:15788452) MGI PMID:15788452 NCBI chr15:72,257,626...72,264,563 JBrowse link
G ETV2 ETS variant transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16630543) Ensembl
MGI		 PMID:16630543 GO_REF:0000107 NCBI chr 6:30,552,780...30,556,374
Ensembl chr 6:30,553,931...30,556,355 		JBrowse link
G GDF9 growth differentiation factor 9 involved_in ISO (PMID:24313324) AgBase PMID:24313324 NCBI chr23:35,678,956...35,684,378
Ensembl chr23:35,679,368...35,682,338 		JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:56,928,164...56,935,675
Ensembl chr23:56,928,676...56,931,785 		JBrowse link
G HNF1A HNF1 homeobox A acts_upstream_of_or_within ISO (PMID:16880268) MGI PMID:16880268 NCBI chr11:116,334,935...116,358,582
Ensembl chr11:116,335,675...116,357,751 		JBrowse link
G HORMAD1 HORMA domain containing 1 involved_in IEA Ensembl GO_REF:0000107
G KPNA7 karyopherin subunit alpha 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20699224) Ensembl
MGI		 PMID:20699224 GO_REF:0000107 NCBI chr28:13,957,818...13,989,778
Ensembl chr28:13,958,285...13,989,633 		JBrowse link
G LOC103214263 NEDD4 binding protein 2 like 2 acts_upstream_of_or_within ISO (PMID:18360097) MGI PMID:18360097 NCBI chr 3:11,191,215...11,287,434
Ensembl chr 3:11,197,302...11,285,607 		JBrowse link
G LOC103225783 cyclin-dependent kinase 11B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15060143) Ensembl
MGI		 PMID:15060143 GO_REF:0000107 NCBI chr20:129,848,297...129,873,287 JBrowse link
G MED21 mediator complex subunit 21 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10500093) Ensembl
MGI		 PMID:10500093 GO_REF:0000107 NCBI chr11:26,773,113...26,780,667
Ensembl chr11:26,773,085...26,782,274 		JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (MGI:3694318|PMID:16728391) UniProt PMID:16728391 MGI:3694318 NCBI chr20:87,180,440...87,215,418
Ensembl chr20:87,180,453...87,215,939 		JBrowse link
G NEK2 NIMA related kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19117032) Ensembl
MGI		 PMID:19117032 GO_REF:0000107 NCBI chr25:17,816,929...17,847,348
Ensembl chr25:17,829,546...17,842,463 		JBrowse link
G NLRP9 NLR family pyrin domain containing 9 acts_upstream_of_or_within ISO (PMID:32413845) MGI PMID:32413845 NCBI chr 6:48,297,437...48,330,352 JBrowse link
G NPM2 nucleophosmin/nucleoplasmin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:20,096,837...20,112,421
Ensembl chr 8:20,097,479...20,105,639 		JBrowse link
G POU5F1 POU class 5 homeobox 1 involved_in ISO (MGI:4946964|PMID:21258368)
(PMID:21258368)		 BHF-UCL PMID:21258368 MGI:4946964 NCBI chr17:41,306,523...41,313,065 JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:6,862,536...6,866,212
Ensembl chr 1:6,862,540...6,865,855 		JBrowse link
G PPP1CC protein phosphatase 1 catalytic subunit gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12606345) Ensembl
MGI		 PMID:12606345 GO_REF:0000107 NCBI chr11:105,962,182...105,986,114 JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 acts_upstream_of_or_within ISO (PMID:10945464) MGI PMID:10945464 NCBI chr 1:17,881,844...17,896,942 JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10945464) Ensembl
MGI		 PMID:10945464 GO_REF:0000107 NCBI chr 6:34,486,303...34,495,392
Ensembl chr 6:34,486,338...34,495,251 		JBrowse link
G RPL13 ribosomal protein L13 acts_upstream_of ISO (PMID:26902285) MGI PMID:26902285 NCBI chr 5:74,918,926...74,921,402 JBrowse link
G RRM2 ribonucleotide reductase regulatory subunit M2 acts_upstream_of ISO (PMID:26902285) MGI PMID:26902285 NCBI chr14:97,512,690...97,519,734
Ensembl chr14:97,512,832...97,521,932 		JBrowse link
G SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 acts_upstream_of_or_within ISO (PMID:11263494)
(PMID:11313485)		 MGI PMID:11263494 PMID:11313485 NCBI chr19:6,902,985...6,945,111
Ensembl chr19:6,902,951...6,944,784 		JBrowse link
G SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 acts_upstream_of_or_within ISO (PMID:34166821) MGI PMID:34166821 NCBI chr16:18,585,965...18,896,161
Ensembl chr16:18,737,158...18,893,994 		JBrowse link
G SPIC Spi-C transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16630543) Ensembl
MGI		 PMID:16630543 GO_REF:0000107 NCBI chr11:96,714,929...96,746,938 JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:9921650) MGI PMID:9921650 NCBI chr12:40,272,507...40,321,740
Ensembl chr12:40,276,916...40,297,372 		JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (PMID:9921650) MGI PMID:9921650 NCBI chr20:41,353,182...41,565,357
Ensembl chr20:41,353,325...41,565,343 		JBrowse link
G THOC2 THO complex 2 acts_upstream_of_or_within ISO (PMID:24315442) MGI PMID:24315442
G THOC5 THO complex subunit 5 acts_upstream_of_or_within ISO (PMID:24315442) MGI PMID:24315442 NCBI chr19:12,386,742...12,427,980
Ensembl chr19:12,385,431...12,427,090 		JBrowse link
G XAB2 XPA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15725628) Ensembl
MGI		 PMID:15725628 GO_REF:0000107 NCBI chr 6:7,105,353...7,116,063
Ensembl chr 6:7,104,785...7,116,020 		JBrowse link
G YAP1 Yes1 associated transcriptional regulator acts_upstream_of ISO (PMID:26902285) MGI PMID:26902285 NCBI chr 1:93,479,478...93,605,340
Ensembl chr 1:93,479,135...93,606,808 		JBrowse link
blastocyst formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr15:9,838,609...9,863,439
Ensembl chr15:9,837,274...9,863,430 		JBrowse link
G BYSL bystin like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17242206) Ensembl
MGI		 PMID:17242206 GO_REF:0000107 NCBI chr17:30,230,001...30,241,684
Ensembl chr17:30,230,337...30,241,417 		JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 acts_upstream_of_or_within ISO (PMID:17784788) MGI PMID:17784788 NCBI chr29:20,829,304...20,849,465
Ensembl chr29:20,828,206...20,839,891 		JBrowse link
G FURIN furin, paired basic amino acid cleaving enzyme involved_in ISO (MGI:5702364|PMID:26416966)
(PMID:26416966)		 CACAO PMID:26416966 MGI:5702364 NCBI chr29:8,980,367...8,992,257
Ensembl chr29:8,979,720...8,988,235 		JBrowse link
G GABPA GA binding protein transcription factor subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 2:66,502,250...66,539,436
Ensembl chr 2:66,505,401...66,539,791 		JBrowse link
G KDM4C lysine demethylase 4C acts_upstream_of_or_within ISO (PMID:19696013) MGI PMID:19696013 NCBI chr12:72,346,194...72,763,040
Ensembl chr12:72,347,071...72,761,666 		JBrowse link
G MATR3 matrin 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr23:41,955,451...41,992,280
Ensembl chr23:41,969,459...41,994,233 		JBrowse link
G MFN2 mitofusin 2 acts_upstream_of_or_within ISO (PMID:16083859) MGI PMID:16083859 NCBI chr20:119,787,700...119,818,455
Ensembl chr20:119,787,370...119,816,693 		JBrowse link
G MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr19:20,177,108...20,195,406
Ensembl chr19:20,176,878...20,194,915 		JBrowse link
G MXI1 MAX interactor 1, dimerization protein acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 9:103,131,534...103,211,609
Ensembl chr 9:103,131,420...103,209,231 		JBrowse link
G NOP2 NOP2 nucleolar protein acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr11:6,590,518...6,601,981
Ensembl chr11:6,590,642...6,601,552 		JBrowse link
G PBRM1 polybromo 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr22:13,914,023...14,059,221
Ensembl chr22:13,913,285...14,055,254 		JBrowse link
G PNLDC1 PARN like ribonuclease domain containing exonuclease 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr13:87,396,297...87,418,368
Ensembl chr13:87,397,636...87,422,594 		JBrowse link
G PTPN18 protein tyrosine phosphatase non-receptor type 18 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr10:27,777...53,757
Ensembl chr10:36,192...53,174 		JBrowse link
G RPL7L1 ribosomal protein L7 like 1 acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chr17:29,261,400...29,272,240
Ensembl chr17:29,262,846...29,272,245 		JBrowse link
G RRP7A ribosomal RNA processing 7 homolog A acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233
G RTN4 reticulon 4 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr14:51,876,697...51,955,788 JBrowse link
G SF3B1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chr10:82,901,908...82,952,094
Ensembl chr10:82,899,079...82,952,071 		JBrowse link
G SF3B6 splicing factor 3b subunit 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23211737), (PMID:27869233) Ensembl
MGI		 PMID:23211737 PMID:27869233 GO_REF:0000107 NCBI chr14:83,593,429...83,602,309
Ensembl chr14:83,593,025...83,604,002 		JBrowse link
G SKIL SKI like proto-oncogene involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10811619) Ensembl
MGI		 PMID:10811619 GO_REF:0000107 NCBI chr15:19,022,167...19,059,117
Ensembl chr15:19,022,017...19,057,004 		JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr16:22,444,864...22,470,248 JBrowse link
G TEAD4 TEA domain transcription factor 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18804437) Ensembl
MGI		 PMID:18804437 GO_REF:0000107 NCBI chr11:3,022,372...3,103,757
Ensembl chr11:3,023,014...3,103,560 		JBrowse link
G TJP1 tight junction protein 1 acts_upstream_of_or_within ISO (PMID:18423437) MGI PMID:18423437 NCBI chr26:52,623,751...52,750,037
Ensembl chr26:52,622,743...52,749,950 		JBrowse link
G TM4SF1 transmembrane 4 L six family member 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr15:41,330,866...41,340,366
Ensembl chr15:41,330,904...41,340,385 		JBrowse link
G TXNRD3 thioredoxin reductase 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr22:54,359,169...54,417,126
Ensembl chr22:54,361,034...54,417,397 		JBrowse link
G USPL1 ubiquitin specific peptidase like 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 3:9,502,322...9,546,633
Ensembl chr 3:9,504,682...9,546,319 		JBrowse link
G WDR74 WD repeat domain 74 acts_upstream_of_or_within ISO (PMID:21799883), (PMID:27869233) MGI PMID:21799883 PMID:27869233 NCBI chr 1:11,063,294...11,070,215
Ensembl chr 1:11,063,265...11,070,218 		JBrowse link
G ZP3 zona pellucida glycoprotein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:10,534,383...10,579,828
Ensembl chr28:10,562,455...10,579,825 		JBrowse link
blastocyst growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24036311) Ensembl
MGI		 PMID:24036311 GO_REF:0000107 NCBI chr 1:54,047,922...54,077,049
Ensembl chr 1:54,047,886...54,077,338 		JBrowse link
G INTS1 integrator complex subunit 1 acts_upstream_of_or_within ISO (PMID:17544522) MGI PMID:17544522 NCBI chr28:20,098,155...20,132,683
Ensembl chr28:20,098,586...20,132,859 		JBrowse link
G NBN nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028 		JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:24036311) MGI PMID:24036311 NCBI chr17:41,306,523...41,313,065 JBrowse link
G RAD51B RAD51 paralog B acts_upstream_of_or_within ISO (PMID:10567591) MGI PMID:10567591 NCBI chr24:45,056,485...45,704,394 JBrowse link
G RAD51B RAD51 paralog B involved_in IEA Ensembl GO_REF:0000107 Ensembl chr24:45,056,787...45,117,699 JBrowse link
G RLN2 relaxin 2 involved_in ISO (PMID:21272344) CACAO PMID:21272344 NCBI chr12:74,184,516...74,191,364
Ensembl chr12:74,186,116...74,190,540 		JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24036311) Ensembl
MGI		 PMID:24036311 GO_REF:0000107 NCBI chr26:41,523,610...41,589,014
Ensembl chr26:41,522,542...41,588,948 		JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:11163203) MGI PMID:11163203 NCBI chr 6:9,943,162...10,044,476 JBrowse link
G UBTFL1 upstream binding transcription factor like 1 acts_upstream_of_or_within ISO (PMID:19915186) MGI PMID:19915186 NCBI chr 1:81,168,060...81,173,080 JBrowse link
G ZNF830 zinc finger protein 830 acts_upstream_of_or_within ISO (PMID:15988037) MGI PMID:15988037 NCBI chr16:28,468,548...28,470,150
Ensembl chr16:28,468,616...28,469,734 		JBrowse link
blastocyst hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP3 A-kinase anchoring protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr11:4,635,962...4,675,993
Ensembl chr11:4,634,442...4,673,571 		JBrowse link
G ANKRD7 ankyrin repeat domain 7 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr21:86,883,543...86,901,221 JBrowse link
G ARHGDIG Rho GDP dissociation inhibitor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 5:226,760...229,449
Ensembl chr 5:227,202...229,274 		JBrowse link
G ASF1B anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 6:12,760,865...12,773,423 JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:12,761,820...12,772,867 JBrowse link
G BCOR BCL6 corepressor acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr  X:37,191,242...37,319,966
Ensembl chr  X:37,192,874...37,319,782 		JBrowse link
G CCDC24 coiled-coil domain containing 24 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr20:88,809,684...88,814,417
Ensembl chr20:88,806,991...88,814,225 		JBrowse link
G CCDC62 coiled-coil domain containing 62 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr11:118,112,517...118,166,571
Ensembl chr11:118,113,620...118,163,128 		JBrowse link
G CMTM3 CKLF like MARVEL transmembrane domain containing 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 5:52,302,606...52,312,277
Ensembl chr 5:52,303,288...52,311,165 		JBrowse link
G COPRS coordinator of PRMT5 and differentiation stimulator acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr16:25,327,180...25,334,493
Ensembl chr16:25,327,134...25,334,413 		JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 1:54,047,922...54,077,049
Ensembl chr 1:54,047,886...54,077,338 		JBrowse link
G CUNH6orf141 chromosome unknown C6orf141 homolog acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr17:22,843,622...22,849,550
Ensembl chr17:22,848,429...22,849,166 		JBrowse link
G FBLL1 fibrillarin like 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr23:70,757,760...70,758,891 JBrowse link
G FBLL1 fibrillarin like 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr23:70,757,568...70,758,760 JBrowse link
G GRN granulin precursor acts_upstream_of_or_within ISO (PMID:15901638) MGI PMID:15901638 NCBI chr16:62,037,344...62,045,765
Ensembl chr16:62,036,412...62,045,614 		JBrowse link
G HCFC1 host cell factor C1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr  X:128,371,518...128,395,920
Ensembl chr  X:128,371,517...128,394,861 		JBrowse link
G HS3ST6 heparan sulfate-glucosamine 3-sulfotransferase 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 5:1,811,600...1,818,668
Ensembl chr 5:1,811,872...1,818,483 		JBrowse link
G LPAR6 lysophosphatidic acid receptor 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 3:26,332,770...26,335,289
Ensembl chr 3:26,333,023...26,334,054 		JBrowse link
G NDUFA2 NADH:ubiquinone oxidoreductase subunit A2 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr23:43,278,488...43,280,852
Ensembl chr23:43,278,551...43,280,847 		JBrowse link
G NECAB1 N-terminal EF-hand calcium binding protein 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 8:85,851,899...86,027,993 JBrowse link
G NECAB1 N-terminal EF-hand calcium binding protein 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 8:85,942,708...86,030,383 JBrowse link
G PEMT phosphatidylethanolamine N-methyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr16:16,540,096...16,626,251
Ensembl chr16:16,539,985...16,611,279 		JBrowse link
G PHF6 PHD finger protein 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr  X:109,531,700...109,595,136
Ensembl chr  X:109,531,726...109,593,854 		JBrowse link
G PLPP4 phospholipid phosphatase 4 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 9:113,240,324...113,376,421
Ensembl chr 9:113,241,117...113,376,428 		JBrowse link
G PPP4R4 protein phosphatase 4 regulatory subunit 4 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr24:71,945,572...72,054,841
Ensembl chr24:71,945,868...72,055,279 		JBrowse link
G RBBP8 RB binding protein 8, endonuclease involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15831459) Ensembl
MGI		 PMID:15831459 GO_REF:0000107 NCBI chr18:57,501,070...57,617,301
Ensembl chr18:57,501,271...57,597,670 		JBrowse link
G SLC25A34 solute carrier family 25 member 34 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr20:116,564,687...116,568,695
Ensembl chr20:116,565,024...116,567,981 		JBrowse link
G SLC35E2B solute carrier family 35 member E2B acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr20:129,808,281...129,843,006
Ensembl chr20:129,824,956...129,846,114 		JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:11163203) MGI PMID:11163203 NCBI chr 6:9,943,162...10,044,476 JBrowse link
G SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 acts_upstream_of_or_within ISO (PMID:11313485)
(PMID:11263494)		 MGI PMID:11263494 PMID:11313485 NCBI chr19:6,902,985...6,945,111
Ensembl chr19:6,902,951...6,944,784 		JBrowse link
G SMIM14 small integral membrane protein 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr27:10,678,022...10,754,886
Ensembl chr27:10,717,204...10,754,174 		JBrowse link
G ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 9:17,269,548...17,400,860 JBrowse link
G ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 9:17,270,133...17,308,328 JBrowse link
G STMN3 stathmin 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 2:567,440...584,080
Ensembl chr 2:573,912...584,276 		JBrowse link
G SUDS3 SDS3 homolog, SIN3A corepressor complex component acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr11:113,720,724...113,763,582
Ensembl chr11:113,720,813...113,760,010 		JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr  X:45,820,114...45,834,727
Ensembl chr  X:45,822,453...45,834,917 		JBrowse link
G TBL1XR1 TBL1X/Y related 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr15:12,223,404...12,406,165
Ensembl chr15:12,224,226...12,402,908 		JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233
G ZBED6 zinc finger BED-type containing 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr25:25,541,014...25,547,258
Ensembl chr25:25,543,414...25,546,344 		JBrowse link
G ZFP14 ZFP14 zinc finger protein acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 6:31,206,848...31,246,367 JBrowse link
G ZNF420 zinc finger protein 420 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 6:31,849,382...31,893,981 JBrowse link
branching involved in labyrinthine layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADM adrenomedullin acts_upstream_of_or_within ISO (PMID:16981008) MGI PMID:16981008 NCBI chr 1:54,518,359...54,520,683
Ensembl chr 1:54,518,358...54,520,686 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:9435295) MGI PMID:9435295 NCBI chr 9:114,234,344...114,354,736
Ensembl chr 9:114,234,250...114,354,704 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23610556) Ensembl
MGI		 PMID:23610556 GO_REF:0000107 NCBI chr10:93,545,792...93,553,092
Ensembl chr10:93,550,189...93,551,946 		JBrowse link
G GCM1 glial cells missing transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10888880) Ensembl
MGI		 PMID:10888880 GO_REF:0000107 NCBI chr17:19,421,054...19,444,311
Ensembl chr17:19,424,896...19,443,079 		JBrowse link
G GRB2 growth factor receptor bound protein 2 acts_upstream_of_or_within ISO (PMID:11369229) MGI PMID:11369229 NCBI chr16:46,264,818...46,346,426
Ensembl chr16:46,264,825...46,347,156 		JBrowse link
G IL10 interleukin 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12842419) Ensembl
MGI		 PMID:12842419 GO_REF:0000107 NCBI chr25:22,590,389...22,595,877
Ensembl chr25:22,590,962...22,594,836 		JBrowse link
G LLGL2 LLGL scribble cell polarity complex component 2 acts_upstream_of_or_within ISO (PMID:21606200) MGI PMID:21606200 NCBI chr16:46,103,080...46,151,576
Ensembl chr16:46,102,939...46,135,594 		JBrowse link
G RSPO3 R-spondin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16963017) Ensembl
MGI		 PMID:16963017 GO_REF:0000107 NCBI chr13:46,530,423...46,606,900
Ensembl chr13:46,530,355...46,606,730 		JBrowse link
G SOCS3 suppressor of cytokine signaling 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11481489) Ensembl
MGI		 PMID:11481489 GO_REF:0000107 NCBI chr16:70,353,099...70,356,401
Ensembl chr16:70,354,746...70,355,423 		JBrowse link
G SPINT1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within ISO (PMID:17174946) MGI PMID:17174946 NCBI chr26:42,136,749...42,150,125
Ensembl chr26:42,134,536...42,150,118 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:30236446) MGI PMID:30236446 NCBI chr11:118,913,145...118,927,335
Ensembl chr11:118,913,078...118,928,281 		JBrowse link
cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EOMES eomesodermin involved_in ISO (MGI:1354065|PMID:10716450)
(PMID:10716450)		 UniProt PMID:10716450 MGI:1354065 NCBI chr15:72,257,626...72,264,563 JBrowse link
G GCM1 glial cells missing transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10888880) Ensembl
TreeGrafter
MGI		 PMID:10888880 GO_REF:0000107 GO_REF:0000118 NCBI chr17:19,421,054...19,444,311
Ensembl chr17:19,424,896...19,443,079 		JBrowse link
G KRT19 keratin 19 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11062258) Ensembl
MGI		 PMID:11062258 GO_REF:0000107 NCBI chr16:64,714,497...64,719,805
Ensembl chr16:64,714,970...64,719,678 		JBrowse link
G KRT8 keratin 8 acts_upstream_of_or_within ISO (PMID:11062258) MGI PMID:11062258 NCBI chr11:49,027,879...49,051,753 JBrowse link
G STK3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19786569) Ensembl
MGI		 PMID:19786569 GO_REF:0000107 NCBI chr 8:93,374,528...93,698,143
Ensembl chr 8:93,374,517...93,697,758 		JBrowse link
G STK4 serine/threonine kinase 4 acts_upstream_of_or_within ISO (PMID:19786569) MGI PMID:19786569 NCBI chr 2:18,737,484...18,844,610
Ensembl chr 2:18,742,162...18,844,647 		JBrowse link
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU5F1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr17:41,306,523...41,313,065 JBrowse link
cell migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMOT angiomotin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12676095) Ensembl
MGI		 PMID:12676095 GO_REF:0000107 NCBI chr  X:100,520,735...100,578,923
Ensembl chr  X:100,520,733...100,578,998 		JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (PMID:15004567) MGI PMID:15004567 NCBI chr12:64,859,301...64,865,676
Ensembl chr12:64,860,958...64,863,544 		JBrowse link
G LOC103230001 left-right determination factor 1 acts_upstream_of_or_within ISO (PMID:15004567) MGI PMID:15004567 NCBI chr25:3,881,085...3,884,596
Ensembl chr25:3,881,837...3,884,151 		JBrowse link
G LRP5 LDL receptor related protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15142971) Ensembl
MGI		 PMID:15142971 GO_REF:0000107 NCBI chr 1:6,090,048...6,224,956
Ensembl chr 1:6,089,930...6,190,383 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15142971) MGI PMID:15142971 NCBI chr11:12,016,542...12,170,496
Ensembl chr11:12,021,560...12,170,663 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:36,529,848...36,580,213
Ensembl chr 6:36,530,014...36,582,525 		JBrowse link
G MIXL1 Mix paired-like homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17151016) Ensembl
MGI		 PMID:17151016 GO_REF:0000107 NCBI chr25:3,542,923...3,546,561
Ensembl chr25:3,544,169...3,546,305 		JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chr10:68,434,839...68,546,431
Ensembl chr10:68,433,258...68,545,990 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:15004567) MGI PMID:15004567 NCBI chr 9:60,852,567...60,863,225
Ensembl chr 9:60,853,763...60,862,839 		JBrowse link
G RIC8A RIC8 guanine nucleotide exchange factor A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21069829) Ensembl
MGI		 PMID:21069829 GO_REF:0000107 NCBI chr 1:18,597...25,398
Ensembl chr 1:19,013...25,473 		JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:21146513) MGI PMID:21146513 NCBI chr 8:50,523,816...50,527,360
Ensembl chr 8:50,524,893...50,527,847 		JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10421635) Ensembl
MGI		 PMID:10421635 GO_REF:0000107 NCBI chr 9:94,797,157...94,803,725
Ensembl chr 9:94,798,088...94,803,629 		JBrowse link
cell-cell adhesion involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RIC8A RIC8 guanine nucleotide exchange factor A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21069829) Ensembl
MGI		 PMID:21069829 GO_REF:0000107 NCBI chr 1:18,597...25,398
Ensembl chr 1:19,013...25,473 		JBrowse link
chordate embryonic development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA1 BRCA1 DNA repair associated acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9171368) MGI
TreeGrafter		 PMID:9171368 GO_REF:0000118 NCBI chr16:63,162,827...63,243,928 JBrowse link
G BRCA2 BRCA2 DNA repair associated acts_upstream_of_or_within ISO (PMID:9171368) MGI PMID:9171368 NCBI chr 3:11,070,086...11,155,257
Ensembl chr 3:11,071,682...11,155,213 		JBrowse link
G CENPU centromere protein U acts_upstream_of_or_within ISO (PMID:23724000) MGI PMID:23724000 NCBI chr 7:130,653,805...130,697,329
Ensembl chr 7:130,653,967...130,697,233 		JBrowse link
G LIMS1 LIM zinc finger domain containing 1 acts_upstream_of_or_within ISO (PMID:15798193) MGI PMID:15798193 NCBI chr14:12,059,347...12,210,779
Ensembl chr14:12,059,411...12,213,064 		JBrowse link
G TRIP6 thyroid hormone receptor interactor 6 involved_in ISO (MGI:5509005|PMID:10826496) UniProt PMID:10826496 MGI:5509005 NCBI chr28:12,352,310...12,358,530
Ensembl chr28:12,352,448...12,358,131 		JBrowse link
G VEZT vezatin, adherens junctions transmembrane protein acts_upstream_of_or_within ISO (PMID:16199027) MGI PMID:16199027 NCBI chr11:90,622,655...90,708,046 JBrowse link
chorio-allantoic fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP5 bone morphogenetic protein 5 involved_in ISO (MGI:1332253|PMID:10079236)
(PMID:10079236)		 BHF-UCL PMID:10079236 MGI:1332253 NCBI chr17:15,696,379...15,819,454
Ensembl chr17:15,696,580...15,819,564 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:6,856,396...6,954,948
Ensembl chr 2:6,856,453...6,954,944 		JBrowse link
G CCN1 cellular communication network factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12446788) Ensembl
MGI		 PMID:12446788 GO_REF:0000107 NCBI chr20:47,783,270...47,786,216
Ensembl chr20:47,783,935...47,785,997 		JBrowse link
G DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO (PMID:10021343) MGI PMID:10021343 NCBI chr21:125,455,782...125,544,495
Ensembl chr21:125,469,957...125,544,820 		JBrowse link
G ERF ETS2 repressor factor acts_upstream_of_or_within ISO (PMID:17502352) MGI PMID:17502352 NCBI chr 6:36,452,604...36,460,188
Ensembl chr 6:36,452,577...36,460,122 		JBrowse link
G ITGA4 integrin subunit alpha 4 acts_upstream_of_or_within ISO (PMID:7539359) MGI PMID:7539359 NCBI chr10:66,984,687...67,063,158
Ensembl chr10:66,984,887...67,061,636 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:10090727) MGI PMID:10090727 NCBI chr 7:55,974,770...56,096,214
Ensembl chr 7:55,990,621...56,094,110 		JBrowse link
G VCAM1 vascular cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:7530222)
(PMID:7539357)		 MGI PMID:7530222 PMID:7539357 NCBI chr20:32,616,425...32,635,903
Ensembl chr20:32,615,333...32,635,862 		JBrowse link
G WNT7B Wnt family member 7B acts_upstream_of_or_within ISO (PMID:11543617) MGI PMID:11543617 NCBI chr19:28,387,324...28,444,019
Ensembl chr19:28,385,422...28,441,350 		JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 acts_upstream_of_or_within ISO (PMID:15226444) MGI PMID:15226444 NCBI chr24:46,000,222...46,005,455
Ensembl chr24:45,999,623...46,006,218 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHACTR4 phosphatase and actin regulator 4 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr20:104,303,966...104,435,342
Ensembl chr20:104,302,429...104,367,831 		JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr14:101,982,551...101,991,305
Ensembl chr14:101,989,895...101,991,220 		JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTHRC1 collagen triple helix repeat containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18606138) Ensembl
MGI		 PMID:18606138 GO_REF:0000107 NCBI chr 8:98,227,661...98,239,984
Ensembl chr 8:98,227,705...98,240,753 		JBrowse link
G DCANP1 dendritic cell associated nuclear protein 1 involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr23:38,224,287...38,227,481 JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16116426) Ensembl
MGI		 PMID:16116426 GO_REF:0000107 NCBI chr20:130,105,032...130,118,978
Ensembl chr20:130,104,639...130,117,139 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16116426)
(PMID:19008950)		 Ensembl
MGI		 PMID:16116426 PMID:19008950 GO_REF:0000107 NCBI chr16:6,599,056...6,608,613
Ensembl chr16:6,599,579...6,608,544 		JBrowse link
G DVL3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (PMID:19008950) MGI PMID:19008950 NCBI chr15:5,254,764...5,270,661
Ensembl chr15:5,254,661...5,270,403 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:10072433) MGI PMID:10072433 NCBI chr 8:66,902,961...67,238,149
Ensembl chr 8:66,902,972...67,060,567 		JBrowse link
G FRZB frizzled related protein acts_upstream_of_or_within ISO (PMID:17433286) MGI PMID:17433286 NCBI chr10:68,353,393...68,385,135
Ensembl chr10:68,351,922...68,385,110 		JBrowse link
G FZD2 frizzled class receptor 2 acts_upstream_of_or_within ISO (PMID:20940229) MGI PMID:20940229 NCBI chr16:61,837,202...61,839,126
Ensembl chr16:61,837,304...61,839,013 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:17395647) MGI PMID:17395647 NCBI chr10:9,302,890...9,561,287
Ensembl chr10:9,304,645...9,369,115 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20643356) Ensembl
MGI		 PMID:20643356 GO_REF:0000107 NCBI chr20:108,338,891...108,375,351
Ensembl chr20:108,330,121...108,361,887 		JBrowse link
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr21:31,272,410...31,275,503
Ensembl chr21:31,272,889...31,275,551 		JBrowse link
G HPN hepsin involved_in ISO (MGI:5306554|PMID:20683358)
(PMID:20683358)		 UniProt PMID:20683358 MGI:5306554 NCBI chr 6:29,973,743...29,998,701
Ensembl chr 6:29,973,867...29,998,855 		JBrowse link
G LOC103216393 paired box protein Pax-2 involved_in
acts_upstream_of_or_within		 ISO (MGI:84247|PMID:8951055)
(PMID:20727173)
(PMID:16916509)
(MGI:4822275|PMID:20727173)		 DFLAT
UniProt
MGI		 PMID:8951055 PMID:16916509 PMID:20727173 MGI:4822275 MGI:84247 NCBI chr 9:93,763,975...93,847,180 JBrowse link
G MYO3A myosin IIIA involved_in ISO (MGI:5766107|PMID:26754646) UniProt PMID:26754646 MGI:5766107 NCBI chr 9:25,635,918...25,902,552 JBrowse link
G MYO3B myosin IIIB involved_in ISO (MGI:5766107|PMID:26754646)
(PMID:26754646)		 UniProt PMID:26754646 MGI:5766107 NCBI chr10:55,710,658...56,184,514 JBrowse link
G NEUROG1 neurogenin 1 involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr23:38,318,432...38,320,099
Ensembl chr23:38,319,121...38,319,834 		JBrowse link
G POU3F4 POU class 3 homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:72,379,656...72,381,186
Ensembl chr  X:72,379,979...72,381,064 		JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20704721) Ensembl
MGI		 PMID:20704721 GO_REF:0000107 NCBI chr17:29,001,797...29,083,767
Ensembl chr17:29,001,805...29,083,700 		JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chr28:15,583,609...15,610,753
Ensembl chr28:15,583,516...15,610,328 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12874121) Ensembl
MGI		 PMID:12874121 GO_REF:0000107 NCBI chr24:37,840,399...37,855,801
Ensembl chr24:37,840,309...37,845,192 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20346939) Ensembl
MGI		 PMID:20346939 GO_REF:0000107 NCBI chr16:49,519,749...49,523,967
Ensembl chr16:49,518,185...49,523,898 		JBrowse link
G TBX1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5284768|PMID:18231833)
(PMID:18231833)
(PMID:17825816)		 UniProt
MGI		 PMID:17825816 PMID:18231833 MGI:5284768 NCBI chr19:5,980,114...5,986,313
Ensembl chr19:5,980,587...5,987,244 		JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:18353863) MGI PMID:18353863 NCBI chr13:9,407,384...9,441,157
Ensembl chr13:9,411,004...9,439,642 		JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:32,627,296...32,636,797
Ensembl chr16:32,627,819...32,636,880 		JBrowse link
G TIFAB TIFA inhibitor involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr23:38,228,904...38,232,892 JBrowse link
G TSHR thyroid stimulating hormone receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10575115) Ensembl
MGI		 PMID:10575115 GO_REF:0000107 NCBI chr24:58,268,546...58,462,742
Ensembl chr24:58,384,224...58,460,432 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:20940229)
(PMID:17433286)
(PMID:19008950)
(PMID:20643356)
(PMID:16116426), (PMID:18606138)		 MGI PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... NCBI chr20:3,521,066...3,549,301
Ensembl chr20:3,521,060...3,548,718 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (PMID:17433286) MGI PMID:17433286 NCBI chr22:16,809,454...16,836,815
Ensembl chr22:16,809,451...16,825,048 		JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21980308) Ensembl
MGI		 PMID:21980308 GO_REF:0000107 NCBI chr 9:30,674,893...30,862,682
Ensembl chr 9:30,674,578...30,863,250 		JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chr15:57,550,878...57,629,106
Ensembl chr15:57,551,189...57,592,661 		JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DVL1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571627) Ensembl
MGI		 PMID:16571627 GO_REF:0000107 NCBI chr20:130,105,032...130,118,978
Ensembl chr20:130,104,639...130,117,139 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571627) Ensembl
MGI		 PMID:16571627 GO_REF:0000107 NCBI chr16:6,599,056...6,608,613
Ensembl chr16:6,599,579...6,608,544 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:16571627), (PMID:17229766) MGI PMID:16571627 PMID:17229766 NCBI chr20:3,521,066...3,549,301
Ensembl chr20:3,521,060...3,548,718 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18257070) Ensembl
MGI		 PMID:18257070 GO_REF:0000107 NCBI chr 8:39,243,775...39,289,050
Ensembl chr 8:39,243,780...39,288,984 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:15218525) MGI PMID:15218525 NCBI chr24:31,097,673...31,104,774
Ensembl chr24:31,097,538...31,101,225 		JBrowse link
G FKBP8 FKBP prolyl isomerase 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18003640)
(PMID:18590716)		 Ensembl
MGI		 PMID:18003640 PMID:18590716 GO_REF:0000107 NCBI chr 6:17,007,764...17,018,409
Ensembl chr 6:17,007,390...17,017,714 		JBrowse link
G FOXA1 forkhead box A1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23383217) Ensembl
MGI		 PMID:23383217 GO_REF:0000107 NCBI chr24:14,397,759...14,403,078
Ensembl chr24:14,396,702...14,403,094 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:9226455)
(PMID:18590716)
(PMID:23383217)		 MGI PMID:9226455 PMID:18590716 PMID:23383217 NCBI chr 2:51,577,127...51,585,168
Ensembl chr 2:51,577,833...51,580,297 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504941)
(PMID:17504940), (PMID:17504941)		 MGI PMID:17504940 PMID:17504941 NCBI chr12:97,590,381...97,593,209
Ensembl chr12:97,591,762...97,592,805 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:18590716), (PMID:19286674)
(PMID:9247260)		 MGI PMID:9247260 PMID:18590716 PMID:19286674 NCBI chr10:9,302,890...9,561,287
Ensembl chr10:9,304,645...9,369,115 		JBrowse link
G GSC goosecoid homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9226455) Ensembl
MGI		 PMID:9226455 GO_REF:0000107 NCBI chr24:72,581,639...72,585,745
Ensembl chr24:72,581,915...72,583,423 		JBrowse link
G KIF3A kinesin family member 3A involved_in
acts_upstream_of_or_within		 ISO (MGI:4888042|PMID:21209331)
(PMID:18590716)
(PMID:18590716), (PMID:19286674)		 BHF-UCL
MGI		 PMID:18590716 PMID:19286674 PMID:21209331 MGI:4888042 NCBI chr23:35,496,770...35,554,536
Ensembl chr23:35,514,130...35,551,472 		JBrowse link
G LOC103219825 protein patched homolog 1 acts_upstream_of_or_within ISO (PMID:9262482) MGI PMID:9262482 NCBI chr12:107,580,895...107,656,443
Ensembl chr12:107,590,663...107,652,985 		JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chr21:125,132,517...125,138,520
Ensembl chr21:125,133,194...125,138,217 		JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chr20:113,810,646...113,929,136
Ensembl chr20:113,823,392...113,928,548 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10557208) Ensembl
MGI		 PMID:10557208 GO_REF:0000107 NCBI chr24:50,394,310...50,476,521
Ensembl chr24:50,405,590...50,472,132 		JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chr25:2,862,354...2,888,735
Ensembl chr25:2,862,251...2,877,386 		JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in ISO (MGI:69552|PMID:7720556)
(PMID:7720556)		 UniProt PMID:7720556 MGI:69552 NCBI chr17:14,383,064...14,418,144
Ensembl chr17:14,383,155...14,414,698 		JBrowse link
G RNF220 ring finger protein 220 acts_upstream_of_or_within ISO (PMID:30177510) MGI PMID:30177510 NCBI chr20:88,134,359...88,387,402 JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17504941)
(PMID:17442700), (PMID:18590716)		 Ensembl
MGI		 PMID:17442700 PMID:17504941 PMID:18590716 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18590716) Ensembl
MGI		 PMID:18590716 GO_REF:0000107 NCBI chr21:97,788,955...97,814,549
Ensembl chr21:97,788,624...97,814,709 		JBrowse link
G TCTN1 tectonic family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16357211) Ensembl
MGI		 PMID:16357211 GO_REF:0000107 NCBI chr11:105,855,138...105,898,764
Ensembl chr11:105,855,288...105,891,093 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chr11:2,956,762...3,005,309
Ensembl chr11:2,956,895...3,006,735 		JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (PMID:8299937) MGI PMID:8299937 NCBI chr25:1,664,316...1,675,006
Ensembl chr25:1,666,053...1,719,881 		JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO (PMID:10932191) MGI PMID:10932191 NCBI chr 8:56,654,939...56,782,803
Ensembl chr 8:56,657,826...56,785,804 		JBrowse link
G GJB6 gap junction protein beta 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12490528) Ensembl
MGI		 PMID:12490528 GO_REF:0000107 NCBI chr 3:775,410...783,770
Ensembl chr 3:782,251...783,036 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:35,748,112...35,940,075
Ensembl chr 4:35,829,386...35,941,271 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15190012) MGI PMID:15190012 NCBI chr19:5,980,114...5,986,313
Ensembl chr19:5,980,587...5,987,244 		JBrowse link
G WDR19 WD repeat domain 19 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22228095) Ensembl
MGI		 PMID:22228095 GO_REF:0000107 NCBI chr27:11,019,897...11,113,760
Ensembl chr27:11,018,827...11,113,666 		JBrowse link
ectoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chr 2:51,577,127...51,585,168
Ensembl chr 2:51,577,833...51,580,297 		JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chr16:30,843,062...30,850,182
Ensembl chr16:30,842,652...30,849,465 		JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELF5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO (PMID:25446535) MGI PMID:25446535 NCBI chr 1:30,746,054...30,785,670 JBrowse link
G ETS2 ETS proto-oncogene 2, transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25446535) Ensembl
MGI		 PMID:25446535 GO_REF:0000107 NCBI chr 2:82,751,196...82,770,051
Ensembl chr 2:82,757,930...82,770,165 		JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100 NCBI chr17:41,306,523...41,313,065 JBrowse link
embryo development ending in birth or egg hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKIRIN2 akirin 2 involved_in ISO (MGI:3771766|PMID:18066067)
(PMID:18066067)		 UniProt PMID:18066067 MGI:3771766 NCBI chr13:12,146,228...12,175,198 JBrowse link
G CAMSAP3 calmodulin regulated spectrin associated protein family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:7,085,113...7,104,133
Ensembl chr 6:7,085,282...7,103,885 		JBrowse link
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 involved_in ISO PMID:11276227 UniProt PMID:11276227 RGD:8554712 NCBI chr16:26,044,751...26,048,920
Ensembl chr16:26,045,061...26,049,101 		JBrowse link
G EVX1 even-skipped homeobox 1 acts_upstream_of_or_within ISO (PMID:7958869) MGI PMID:7958869 NCBI chr21:31,118,911...31,130,186
Ensembl chr21:31,123,397...31,126,792 		JBrowse link
G FGF2 fibroblast growth factor 2 ISO RGD PMID:19476451 RGD:2315829 NCBI chr 7:70,089,394...70,157,423 JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14623825) Ensembl
MGI		 PMID:14623825 GO_REF:0000107 NCBI chr 9:94,797,157...94,803,725
Ensembl chr 9:94,798,088...94,803,629 		JBrowse link
G FXN frataxin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10767347) Ensembl
MGI		 PMID:10767347 GO_REF:0000107 NCBI chr12:80,133,899...80,173,950
Ensembl chr12:80,134,422...80,173,168 		JBrowse link
G HUS1 HUS1 checkpoint clamp component involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:10,826,799...10,841,579
Ensembl chr21:10,826,846...10,841,382 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:93,831,218...93,839,098
Ensembl chr 8:93,831,480...93,839,263 		JBrowse link
G RICTOR RPTOR independent companion of MTOR complex 2 involved_in ISO (MGI:3702793|PMID:16962829) UniProt PMID:16962829 MGI:3702793 NCBI chr 4:37,758,531...37,885,323
Ensembl chr 4:37,762,901...37,873,766 		JBrowse link
G SCEL sciellin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:56,473,748...56,733,336
Ensembl chr 3:56,621,817...56,730,830 		JBrowse link
G SEBOX SEBOX homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18753614) Ensembl
MGI		 PMID:18753614 GO_REF:0000107 NCBI chr16:22,130,183...22,131,889
Ensembl chr16:22,130,941...22,131,889 		JBrowse link
G STOX2 storkhead box 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:129,874,225...129,991,804
Ensembl chr 7:129,875,664...129,985,547 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16702401) Ensembl
MGI		 PMID:16702401 GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G TP53BP2 tumor protein p53 binding protein 2 acts_upstream_of_or_within ISO (PMID:16702401) MGI PMID:16702401 NCBI chr25:5,774,037...5,841,620
Ensembl chr25:5,774,063...5,841,709 		JBrowse link
G UBR3 ubiquitin protein ligase E3 component n-recognin 3 involved_in ISO (MGI:3718176|PMID:17462990)
(PMID:17462990)		 UniProt PMID:17462990 MGI:3718176 NCBI chr10:55,354,367...55,616,810
Ensembl chr10:55,354,365...55,614,520 		JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (PMID:11118896) MGI PMID:11118896 NCBI chr15:5,030,618...5,040,399
Ensembl chr15:5,030,457...5,039,991 		JBrowse link
G CHRDL1 chordin like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:98,490,291...98,611,811
Ensembl chr  X:98,489,874...98,611,951 		JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:62,126,383...62,131,919
Ensembl chr  X:62,126,320...62,130,220 		JBrowse link
G COBL cordon-bleu WH2 repeat protein involved_in ISO (MGI:76306|PMID:7586755)
(PMID:7586755)		 BHF-UCL PMID:7586755 MGI:76306 NCBI chr21:7,501,647...7,803,175
Ensembl chr21:7,598,126...7,803,177 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9230313) Ensembl
MGI		 PMID:9230313 GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G FRAT1 FRAT regulator of WNT signaling pathway 1 acts_upstream_of_or_within ISO (PMID:10534617) MGI PMID:10534617 NCBI chr 9:90,491,841...90,495,112
Ensembl chr 9:90,492,722...90,493,561 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:93,545,792...93,553,092
Ensembl chr10:93,550,189...93,551,946 		JBrowse link
G STIL STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chr20:85,600,171...85,662,732
Ensembl chr20:85,604,539...85,662,333 		JBrowse link
G WNT1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:45,217,402...45,222,996
Ensembl chr11:45,219,027...45,222,017 		JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:49,805,415...49,863,115
Ensembl chr22:49,805,463...49,862,830 		JBrowse link
embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDON cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16647303)
(PMID:16647304)		 Ensembl
MGI		 PMID:16647303 PMID:16647304 GO_REF:0000107 NCBI chr 1:117,091,778...117,255,354
Ensembl chr 1:117,092,178...117,152,030 		JBrowse link
G FUZ fuzzy planar cell polarity protein involved_in ISO (MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618)
(PMID:19767740), (PMID:21935430), (PMID:23806618)		 UniProt PMID:19767740 PMID:21935430 PMID:23806618 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chr 6:42,968,715...42,975,374
Ensembl chr 6:42,969,000...42,975,368 		JBrowse link
G GATAD2A GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chr 6:17,847,310...17,971,219
Ensembl chr 6:17,847,307...17,971,220 		JBrowse link
G GREM2 gremlin 2, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:77,600,306...77,724,090
Ensembl chr25:77,602,803...77,603,309 		JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chr22:51,528,383...51,616,757
Ensembl chr22:51,528,254...51,616,682 		JBrowse link
G MAB21L2 mab-21 like 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15385160) Ensembl
MGI		 PMID:15385160 GO_REF:0000107 NCBI chr 7:97,173,010...97,177,863
Ensembl chr 7:97,176,195...97,177,274 		JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chr10:68,434,839...68,546,431
Ensembl chr10:68,433,258...68,545,990 		JBrowse link
G OFD1 OFD1 centriole and centriolar satellite protein involved_in ISO (MGI:5498583|PMID:23806618)
(PMID:23806618)		 UniProt PMID:23806618 MGI:5498583 NCBI chr  X:12,222,396...12,256,802
Ensembl chr  X:12,222,760...12,256,557 		JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:15013802) MGI PMID:15013802 NCBI chr17:61,750,757...61,769,041 JBrowse link
G ZNF281 zinc finger protein 281 involved_in ISO (MGI:5448369|PMID:21915945)
(PMID:21915945)		 UniProt PMID:21915945 MGI:5448369 NCBI chr25:29,011,153...29,016,298
Ensembl chr25:29,011,516...29,014,215 		JBrowse link
embryonic brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO RGD PMID:19819228 RGD:11537397 NCBI chr13:37,918,902...38,138,838
Ensembl chr13:37,924,440...38,139,366 		JBrowse link
G CC2D2A coiled-coil and C2 domain containing 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24947469) Ensembl
MGI		 PMID:24947469 GO_REF:0000107 NCBI chr27:34,625,701...34,761,873
Ensembl chr27:34,625,105...34,761,745 		JBrowse link
G CDC40 cell division cycle 40 involved_in ISO (PMID:33220177) UniProt PMID:33220177 NCBI chr13:63,666,294...63,718,628
Ensembl chr13:63,666,294...63,718,521 		JBrowse link
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (PMID:28817564) MGI PMID:28817564 NCBI chr12:98,522,596...98,530,734
Ensembl chr12:98,522,333...98,530,817 		JBrowse link
G CNTNAP2 contactin associated protein 2 involved_in ISO (PMID:32879327) MGI PMID:32879327 NCBI chr21:114,741,918...116,988,691 JBrowse link
G CTNNB1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G EN1 engrailed homeobox 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr10:11,475,221...11,479,475 JBrowse link
G EN2 engrailed homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:123,590,840...123,596,381 JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chr 5:1,419,432...1,523,342
Ensembl chr 5:1,415,664...1,521,843 		JBrowse link
G LOC103216935 uncharacterized LOC103216935 involved_in ISO (MGI:75252|PMID:7624797)
(PMID:7624797)		 ParkinsonsUK-UCL PMID:7624797 MGI:75252 NCBI chr10:11,470,295...11,558,688
Ensembl chr10:11,475,221...11,479,475 		JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20589884) Ensembl
MGI		 PMID:20589884 GO_REF:0000107 NCBI chr  X:60,915,796...60,939,220
Ensembl chr  X:60,915,703...60,937,677 		JBrowse link
G MEGF8 multiple EGF like domains 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:32203821) MGI
Ensembl		 PMID:32203821 GO_REF:0000107 NCBI chr 6:36,529,848...36,580,213
Ensembl chr 6:36,530,014...36,582,525 		JBrowse link
G MFSD2A MFSD2 lysolipid transporter A, lysophospholipid NOT|involved_in ISO (MGI:6196220|PMID:30074985)
(PMID:30074985)		 ARUK-UCL PMID:30074985 MGI:6196220 NCBI chr20:92,926,217...92,941,191
Ensembl chr20:92,926,067...92,941,159 		JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23454480) Ensembl
MGI		 PMID:23454480 GO_REF:0000107 NCBI chr16:35,182,276...35,196,167
Ensembl chr16:35,182,568...35,199,858 		JBrowse link
G PCNT pericentrin acts_upstream_of_or_within ISO (PMID:25220058) MGI PMID:25220058 NCBI chr 2:89,934,888...90,046,767
Ensembl chr 2:89,936,210...90,046,328 		JBrowse link
G PHF10 PHD finger protein 10 ISO RGD PMID:24056535 RGD:9588230 NCBI chr13:97,512,754...97,532,903
Ensembl chr13:97,512,867...97,532,896 		JBrowse link
G PPIL1 peptidylprolyl isomerase like 1 involved_in ISO (PMID:33220177) UniProt PMID:33220177 NCBI chr17:35,260,471...35,281,367 JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in ISO (PMID:17868671) MGI PMID:17868671 NCBI chr11:38,696,771...38,819,324
Ensembl chr11:38,694,602...38,718,519 		JBrowse link
G PRICKLE2 prickle planar cell polarity protein 2 involved_in ISO (PMID:17868671) MGI PMID:17868671 NCBI chr22:25,128,160...25,481,385
Ensembl chr22:25,133,352...25,303,131 		JBrowse link
G RNF112 ring finger protein 112 involved_in ISO (MGI:6154439|PMID:26951452)
(PMID:26951452)		 UniProt PMID:26951452 MGI:6154439 NCBI chr16:17,996,532...18,002,842
Ensembl chr16:17,996,915...18,001,716 		JBrowse link
G RPL10 ribosomal protein L10 involved_in ISO (PMID:25316788) UniProt PMID:25316788
G SLC6A8 solute carrier family 6 member 8 ISO RGD PMID:15918910 RGD:1599815 NCBI chr  X:128,116,490...128,124,899
Ensembl chr  X:128,116,944...128,124,918 		JBrowse link
G TBC1D23 TBC1 domain family member 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:80,555,115...80,619,251
Ensembl chr22:80,554,669...80,619,234 		JBrowse link
G TMEM94 transmembrane protein 94 acts_upstream_of_or_within ISO (PMID:30526868) MGI PMID:30526868 NCBI chr16:46,178,237...46,223,931
Ensembl chr16:46,177,181...46,202,463 		JBrowse link
G TRA2B transformer 2 beta homolog acts_upstream_of_or_within ISO (PMID:22194695) MGI PMID:22194695 NCBI chr15:3,493,287...3,514,421
Ensembl chr15:3,493,541...3,513,994 		JBrowse link
G TTBK2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (PMID:21548880) MGI PMID:21548880 NCBI chr26:40,048,802...40,228,083
Ensembl chr26:40,048,943...40,231,228 		JBrowse link
G WNT1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:45,217,402...45,222,996
Ensembl chr11:45,219,027...45,222,017 		JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:17184764) MGI PMID:17184764 NCBI chr26:25,439,159...25,557,199
Ensembl chr26:25,439,360...25,557,202 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within		 ISO (MGI:3042765|PMID:14623956)
(PMID:14623956)
(PMID:17184764)		 UniProt
MGI		 PMID:14623956 PMID:17184764 MGI:3042765 NCBI chr29:19,347,101...19,383,600 JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr29:19,352,008...19,383,622 JBrowse link
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (PMID:28817564) MGI PMID:28817564 NCBI chr12:98,522,596...98,530,734
Ensembl chr12:98,522,333...98,530,817 		JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15958512) Ensembl
MGI		 PMID:15958512 GO_REF:0000107 NCBI chr 4:43,080,387...43,163,355
Ensembl chr 4:43,081,831...43,163,432 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18791178) Ensembl
MGI		 PMID:18791178 GO_REF:0000107 NCBI chr10:93,545,792...93,553,092
Ensembl chr10:93,550,189...93,551,946 		JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chr 5:1,419,432...1,523,342
Ensembl chr 5:1,415,664...1,521,843 		JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:10498698)
(PMID:10572050)		 MGI PMID:10498698 PMID:10572050 NCBI chr 7:58,501,669...58,526,413
Ensembl chr 7:58,501,559...58,507,318 		JBrowse link
G PPP1R13L protein phosphatase 1 regulatory subunit 13 like acts_upstream_of_or_within ISO (PMID:15661756) MGI PMID:15661756 NCBI chr 6:38,828,564...38,853,760 JBrowse link
G RARA retinoic acid receptor alpha acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chr16:65,817,849...65,866,862
Ensembl chr16:65,817,757...65,866,878 		JBrowse link
G RARG retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chr11:49,319,104...49,340,725
Ensembl chr11:49,319,839...49,328,656 		JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17473173) Ensembl
MGI		 PMID:17473173 GO_REF:0000107 NCBI chr 8:68,903,665...68,933,536
Ensembl chr 8:68,904,352...68,933,792 		JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chr10:124,348,763...124,428,522
Ensembl chr10:124,348,916...124,429,716 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chr11:2,956,762...3,005,309
Ensembl chr11:2,956,895...3,006,735 		JBrowse link
G WDR19 WD repeat domain 19 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22228095) Ensembl
MGI		 PMID:22228095 GO_REF:0000107 NCBI chr27:11,019,897...11,113,760
Ensembl chr27:11,018,827...11,113,666 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr26:9,275,317...9,311,302
Ensembl chr26:9,278,303...9,311,475 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:39,040,178...39,042,384
Ensembl chr21:39,040,547...39,041,146 		JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10049573) Ensembl
MGI		 PMID:10049573 GO_REF:0000107 NCBI chr 2:6,856,396...6,954,948
Ensembl chr 2:6,856,453...6,954,944 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18653562) Ensembl
MGI		 PMID:18653562 GO_REF:0000107 NCBI chr13:34,009,527...34,011,924
Ensembl chr13:34,010,228...34,011,046 		JBrowse link
G FOXF2 forkhead box F2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:70,744,989...70,750,860
Ensembl chr17:70,745,011...70,750,652 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:93,545,792...93,553,092
Ensembl chr10:93,550,189...93,551,946 		JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:19,680,952...19,731,503
Ensembl chr20:19,680,778...19,730,129 		JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr21:108,310,782...108,533,274
Ensembl chr21:108,322,096...108,533,226 		JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:28778798) MGI PMID:28778798 NCBI chr22:51,528,383...51,616,757
Ensembl chr22:51,528,254...51,616,682 		JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:28778798) MGI PMID:28778798 NCBI chr14:80,130,436...80,171,259 JBrowse link
G IFT172 intraflagellar transport 172 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr14:80,138,354...80,171,200 JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18582859) Ensembl
MGI		 PMID:18582859 GO_REF:0000107 NCBI chr10:104,960,296...104,966,596
Ensembl chr10:104,960,120...104,966,585 		JBrowse link
G KDM2B lysine demethylase 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:116,805,541...116,957,236
Ensembl chr11:116,796,370...116,956,334 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19653321)
(PMID:18985738)		 MGI PMID:18985738 PMID:19653321 NCBI chr11:12,016,542...12,170,496
Ensembl chr11:12,021,560...12,170,663 		JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within ISO (PMID:18653562) MGI PMID:18653562 NCBI chr 1:33,386,165...33,414,605
Ensembl chr 1:33,392,970...33,414,587 		JBrowse link
G SP1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chr11:49,484,459...49,516,941
Ensembl chr11:49,484,518...49,512,541 		JBrowse link
G SP3 Sp3 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chr10:59,414,739...59,471,596
Ensembl chr10:59,416,152...59,470,456 		JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:32,627,296...32,636,797
Ensembl chr16:32,627,819...32,636,880 		JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:9811866) MGI PMID:9811866 NCBI chr17:61,750,757...61,769,041 JBrowse link
G TH tyrosine hydroxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:1,969,194...1,977,263
Ensembl chr 1:1,966,460...1,977,218 		JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18436818) Ensembl
MGI		 PMID:18436818 GO_REF:0000107 NCBI chr 9:30,674,893...30,862,682
Ensembl chr 9:30,674,578...30,863,250 		JBrowse link
embryonic cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AATF apoptosis antagonizing transcription factor involved_in
acts_upstream_of		 IEA
ISO		 (PMID:11071758) Ensembl
MGI		 PMID:11071758 GO_REF:0000107 NCBI chr16:30,728,070...30,838,816
Ensembl chr16:30,728,070...30,838,704 		JBrowse link
G CUL3 cullin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:110,425,895...110,541,431
Ensembl chr10:110,425,076...110,541,538 		JBrowse link
G DPPA3 developmental pluripotency associated 3 acts_upstream_of_or_within ISO (PMID:15018652) MGI PMID:15018652 NCBI chr11:7,743,045...7,751,285 JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9426063) Ensembl
MGI		 PMID:9426063 GO_REF:0000107 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G GDF9 growth differentiation factor 9 involved_in ISO (PMID:24313324) AgBase PMID:24313324 NCBI chr23:35,678,956...35,684,378
Ensembl chr23:35,679,368...35,682,338 		JBrowse link
G PADI6 peptidyl arginine deiminase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:115,174,421...115,207,721
Ensembl chr20:115,176,446...115,207,106 		JBrowse link
G PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta acts_upstream_of_or_within ISO (PMID:11919689) MGI PMID:11919689 NCBI chr15:51,705,585...51,885,848
Ensembl chr15:51,775,733...51,889,238 		JBrowse link
G RHOA ras homolog family member A involved_in ISO (PMID:25485583) AgBase PMID:25485583 NCBI chr22:10,757,381...10,809,257
Ensembl chr22:10,757,337...10,772,704 		JBrowse link
G TOP1 DNA topoisomerase I involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8943335) Ensembl
MGI		 PMID:8943335 GO_REF:0000107 NCBI chr 2:22,655,085...22,751,082
Ensembl chr 2:22,651,995...22,751,102 		JBrowse link
G TOP2A DNA topoisomerase II alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11835580) Ensembl
MGI		 PMID:11835580 GO_REF:0000107 NCBI chr16:65,761,391...65,792,041
Ensembl chr16:65,761,416...65,792,701 		JBrowse link
G TPRA1 transmembrane protein adipocyte associated 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18459117) Ensembl
MGI		 PMID:18459117 GO_REF:0000107 NCBI chr22:53,447,383...53,467,709
Ensembl chr22:53,449,903...53,468,442 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chr24:31,097,673...31,104,774
Ensembl chr24:31,097,538...31,101,225 		JBrowse link
G CDH11 cadherin 11 acts_upstream_of_or_within ISO (PMID:17143286) MGI PMID:17143286 NCBI chr 5:50,652,628...50,825,640
Ensembl chr 5:50,649,627...50,775,440 		JBrowse link
G DLX2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7590232) Ensembl
MGI		 PMID:7590232 GO_REF:0000107 NCBI chr10:57,604,989...57,609,487
Ensembl chr10:57,606,084...57,608,079 		JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:24360810) UniProt PMID:24360810 NCBI chr16:72,097,692...72,113,112 JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in ISO (PMID:7874170), (PMID:7987400) BHF-UCL PMID:7874170 PMID:7987400 NCBI chr 9:114,234,344...114,354,736
Ensembl chr 9:114,234,250...114,354,704 		JBrowse link
G FOXC2 forkhead box C2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9106663) Ensembl
MGI		 PMID:9106663 GO_REF:0000107 NCBI chr 5:71,951,980...71,955,021
Ensembl chr 5:71,952,632...71,954,134 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17525797) MGI PMID:17525797 NCBI chr12:97,590,381...97,593,209
Ensembl chr12:97,591,762...97,592,805 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21377456) MGI PMID:21377456 NCBI chr 8:96,340,459...96,526,366
Ensembl chr 8:96,342,189...96,526,363 		JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chr 5:1,419,432...1,523,342
Ensembl chr 5:1,415,664...1,521,843 		JBrowse link
G IRX5 iroquois homeobox 5 involved_in ISO (PMID:22581230) UniProt PMID:22581230 NCBI chr 5:40,705,061...40,708,749 JBrowse link
G LOC103233656 zinc transporter ZIP3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16652366) Ensembl
MGI		 PMID:16652366 GO_REF:0000107 NCBI chr 6:2,508,561...2,518,659
Ensembl chr 6:2,507,954...2,518,657 		JBrowse link
G LOC103243509 neuroendocrine secretory protein 55 acts_upstream_of_or_within ISO (PMID:15797856) MGI PMID:15797856 NCBI chr 2:5,233,893...5,303,433
Ensembl chr 2:5,233,874...5,249,192 		JBrowse link
G MMP14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO (PMID:18022611) MGI PMID:18022611 NCBI chr29:23,201,425...23,212,408
Ensembl chr29:23,201,112...23,212,679 		JBrowse link
G MMP16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18022611) Ensembl
MGI		 PMID:18022611 GO_REF:0000107 NCBI chr 8:83,122,904...83,407,910
Ensembl chr 8:83,132,315...83,407,933 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19763162) Ensembl
MGI		 PMID:19763162 GO_REF:0000107 NCBI chr 4:35,748,112...35,940,075
Ensembl chr 4:35,829,386...35,941,271 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chr 9:60,852,567...60,863,225
Ensembl chr 9:60,853,763...60,862,839 		JBrowse link
G PAX5 paired box 5 acts_upstream_of_or_within ISO (PMID:23349049) MGI PMID:23349049 NCBI chr12:43,547,399...43,748,202
Ensembl chr12:43,548,914...43,740,962 		JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:14,243,291...14,307,373
Ensembl chr 7:14,241,070...14,307,422 		JBrowse link
G PRRX1 paired related homeobox 1 acts_upstream_of_or_within ISO (PMID:9729491)
(PMID:7758948)		 MGI PMID:7758948 PMID:9729491 NCBI chr25:58,347,686...58,423,454
Ensembl chr25:58,347,704...58,421,980 		JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491) MGI PMID:9729491 NCBI chr12:8,424,415...8,447,959
Ensembl chr12:8,424,737...8,480,393 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15030764) Ensembl
MGI		 PMID:15030764 GO_REF:0000107 NCBI chr17:26,679,386...26,807,812
Ensembl chr17:26,683,175...26,807,319 		JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:20133625) MGI PMID:20133625 NCBI chr22:8,421,178...8,567,221
Ensembl chr22:8,420,960...8,567,201 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20515681) Ensembl
MGI		 PMID:20515681 GO_REF:0000107 NCBI chr24:37,840,399...37,855,801
Ensembl chr24:37,840,309...37,845,192 		JBrowse link
G SIX2 SIX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20515681) Ensembl
MGI		 PMID:20515681 GO_REF:0000107 NCBI chr14:62,212,920...62,219,976
Ensembl chr14:62,213,115...62,220,069 		JBrowse link
G SIX4 SIX homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20515681) Ensembl
MGI		 PMID:20515681 GO_REF:0000107 NCBI chr24:37,899,463...37,911,875
Ensembl chr24:37,900,909...37,911,612 		JBrowse link
G SLC39A1 solute carrier family 39 member 1 acts_upstream_of_or_within ISO (PMID:16652366) MGI PMID:16652366 NCBI chr20:9,847,928...9,852,998
Ensembl chr20:9,847,968...9,853,413 		JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chr18:33,017,138...33,105,320
Ensembl chr18:33,017,492...33,104,606 		JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chr26:16,319,959...16,446,472
Ensembl chr26:16,320,933...16,446,527 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15190012) MGI PMID:15190012 NCBI chr19:5,980,114...5,986,313
Ensembl chr19:5,980,587...5,987,244 		JBrowse link
G TBX15 T-box transcription factor 15 acts_upstream_of_or_within ISO (PMID:15728667) MGI PMID:15728667 NCBI chr20:14,762,073...14,870,417
Ensembl chr20:14,818,525...14,871,196 		JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in
acts_upstream_of_or_within		 ISO (MGI:80519|PMID:8622766)
(PMID:8622766)
(PMID:8622765)		 UniProt
MGI		 PMID:8622765 PMID:8622766 MGI:80519 NCBI chr17:61,750,757...61,769,041 JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:16806156) MGI PMID:16806156 NCBI chr12:40,272,507...40,321,740
Ensembl chr12:40,276,916...40,297,372 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:75,112,903...75,200,263
Ensembl chr15:75,112,561...75,197,711 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15030764) Ensembl
MGI		 PMID:15030764 GO_REF:0000107 NCBI chr21:39,040,178...39,042,384
Ensembl chr21:39,040,547...39,041,146 		JBrowse link
G TWIST2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chr10:124,889,954...124,953,135
Ensembl chr10:124,890,134...124,890,613 		JBrowse link
G WDR19 WD repeat domain 19 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22228095) Ensembl
MGI		 PMID:22228095 GO_REF:0000107 NCBI chr27:11,019,897...11,113,760
Ensembl chr27:11,018,827...11,113,666 		JBrowse link
G WNT9B Wnt family member 9B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16054034)
(PMID:16998816)		 Ensembl
MGI		 PMID:16054034 PMID:16998816 GO_REF:0000107 NCBI chr16:60,560,132...60,596,782
Ensembl chr16:60,581,258...60,586,596 		JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase acts_upstream_of_or_within ISO (PMID:7670465) MGI PMID:7670465 NCBI chr 2:19,167,209...19,200,233 JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:16806149) MGI PMID:16806149 NCBI chr26:25,439,159...25,557,199
Ensembl chr26:25,439,360...25,557,202 		JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr 7:22,202,497...22,205,730
Ensembl chr 7:22,202,527...22,204,068 		JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16308329) Ensembl
MGI		 PMID:16308329 GO_REF:0000107 NCBI chr 4:43,080,387...43,163,355
Ensembl chr 4:43,081,831...43,163,432 		JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within ISO (PMID:16308329) MGI PMID:16308329 NCBI chr 3:1,779,126...1,811,427
Ensembl chr 3:1,779,192...1,812,784 		JBrowse link
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16439479) Ensembl
MGI		 PMID:16439479 GO_REF:0000107 NCBI chr 5:71,898,473...71,902,624
Ensembl chr 5:71,898,786...71,903,661 		JBrowse link
G FOXF2 forkhead box F2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16439479) Ensembl
MGI		 PMID:16439479 GO_REF:0000107 NCBI chr17:70,744,989...70,750,860
Ensembl chr17:70,745,011...70,750,652 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:10693670) MGI PMID:10693670 NCBI chr10:9,302,890...9,561,287
Ensembl chr10:9,304,645...9,369,115 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10693670) Ensembl
MGI		 PMID:10693670 GO_REF:0000107 NCBI chr21:16,386,700...16,665,648
Ensembl chr21:16,549,789...16,662,238 		JBrowse link
G MYB MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (PMID:10523863) MGI PMID:10523863 NCBI chr13:38,203,923...38,242,148
Ensembl chr13:38,203,731...38,241,864 		JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (MGI:3795695|PMID:18519639)
(PMID:18519639)		 BHF-UCL PMID:18519639 MGI:3795695 NCBI chr12:86,907,173...87,367,935
Ensembl chr12:87,042,557...87,367,033 		JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic involved_in ISO (MGI:3813934|PMID:19097194)
(PMID:19097194)		 UniProt PMID:19097194 MGI:3813934 NCBI chr14:65,203,757...65,214,386
Ensembl chr14:65,204,620...65,214,190 		JBrowse link
G RARB retinoic acid receptor beta involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chr15:69,851,447...70,266,215
Ensembl chr15:70,096,117...70,264,905 		JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:118,487,199...118,490,561
Ensembl chr21:118,487,506...118,489,516 		JBrowse link
G SALL1 spalt like transcription factor 1 involved_in ISO (PMID:18280297) UniProt PMID:18280297 NCBI chr 5:36,928,711...36,944,158
Ensembl chr 5:36,927,990...36,943,630 		JBrowse link
G SCT secretin ISO RGD PMID:1711228 RGD:729899 NCBI chr 1:444,487...445,535
Ensembl chr 1:444,601...445,339 		JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr26:9,275,317...9,311,302
Ensembl chr26:9,278,303...9,311,475 		JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:11,163,651...11,259,868
Ensembl chr25:11,163,100...11,258,470 		JBrowse link
G TNF tumor necrosis factor involved_in ISO (PMID:20875417) DFLAT PMID:20875417
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16618415)
(PMID:15017552)		 Ensembl
MGI		 PMID:15017552 PMID:16618415 GO_REF:0000107 NCBI chr 4:43,080,387...43,163,355
Ensembl chr 4:43,081,831...43,163,432 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:21550054)
(PMID:16618415), (PMID:21492869)		 MGI PMID:16618415 PMID:21492869 PMID:21550054 NCBI chr 9:114,234,344...114,354,736
Ensembl chr 9:114,234,250...114,354,704 		JBrowse link
G FOXF1 forkhead box F1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:71,898,473...71,902,624
Ensembl chr 5:71,898,786...71,903,661 		JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:16127717) MGI PMID:16127717 NCBI chr 8:7,348,145...7,432,574
Ensembl chr 8:7,349,660...7,400,562 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16247775) Ensembl
MGI		 PMID:16247775 GO_REF:0000107 NCBI chr21:16,386,700...16,665,648
Ensembl chr21:16,549,789...16,662,238 		JBrowse link
G HLX H2.0 like homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8557196) Ensembl
MGI		 PMID:8557196 GO_REF:0000107 NCBI chr25:8,641,386...8,647,485
Ensembl chr25:8,641,752...8,646,563 		JBrowse link
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18635606) Ensembl
MGI		 PMID:18635606 GO_REF:0000107 NCBI chr16:30,033,486...30,097,106
Ensembl chr16:30,036,766...30,097,088 		JBrowse link
G ID2 inhibitor of DNA binding 2 involved_in ISO (MGI:4399020|PMID:16888283)
(PMID:16888283)		 UniProt PMID:16888283 MGI:4399020 NCBI chr14:98,962,001...98,964,486 JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10821773) Ensembl
MGI		 PMID:10821773 GO_REF:0000107 NCBI chr10:104,960,296...104,966,596
Ensembl chr10:104,960,120...104,966,585 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:35,748,112...35,940,075
Ensembl chr 4:35,829,386...35,941,271 		JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16423343) Ensembl
MGI		 PMID:16423343 GO_REF:0000107 NCBI chr 2:47,082,294...47,118,880
Ensembl chr 2:47,082,167...47,117,521 		JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in ISO (MGI:1860627|PMID:10903171)
(PMID:10903171)		 UniProt PMID:10903171 MGI:1860627 NCBI chr 7:14,243,291...14,307,373
Ensembl chr 7:14,241,070...14,307,422 		JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chr 7:58,501,669...58,526,413
Ensembl chr 7:58,501,559...58,507,318 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10821773) Ensembl
MGI		 PMID:10821773 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16141225) Ensembl
MGI		 PMID:16141225 GO_REF:0000107 NCBI chr15:32,684,598...32,694,640
Ensembl chr15:32,684,705...32,692,699 		JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:62,212,920...62,219,976
Ensembl chr14:62,213,115...62,220,069 		JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISO (MGI:3052265|PMID:15254231)
(PMID:15254231)		 UniProt PMID:15254231 MGI:3052265 NCBI chr14:101,982,551...101,991,305
Ensembl chr14:101,989,895...101,991,220 		JBrowse link
G TCF21 transcription factor 21 ISO RGD PMID:11804032 RGD:727206 NCBI chr13:39,607,179...39,610,336
Ensembl chr13:39,607,182...39,610,388 		JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chr23:36,919,648...36,953,088
Ensembl chr23:36,919,745...36,951,192 		JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chr 9:105,828,834...106,047,810 JBrowse link
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9272948)
(PMID:9268572)		 Ensembl
MGI		 PMID:9268572 PMID:9272948 GO_REF:0000107 NCBI chr 1:21,051,413...21,099,159
Ensembl chr 1:21,051,580...21,097,605 		JBrowse link
G B9D1 B9 domain containing 1 acts_upstream_of_or_within ISO (PMID:22179047) MGI PMID:22179047 NCBI chr16:17,925,741...17,945,879
Ensembl chr16:17,925,134...17,945,878 		JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chr24:31,097,673...31,104,774
Ensembl chr24:31,097,538...31,101,225 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20043884) Ensembl
MGI		 PMID:20043884 GO_REF:0000107 NCBI chr 9:44,944,463...45,108,832
Ensembl chr 9:44,941,460...45,027,275 		JBrowse link
G BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within ISO (PMID:18539921) MGI PMID:18539921 NCBI chr 8:52,962,686...52,999,006
Ensembl chr 8:52,968,532...52,998,996 		JBrowse link
G C2CD3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chr 1:65,282,311...65,436,007
Ensembl chr 1:65,282,318...65,435,834 		JBrowse link
G CHST11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (PMID:16079159) MGI PMID:16079159 NCBI chr11:99,662,890...99,982,276
Ensembl chr11:99,665,290...99,981,977 		JBrowse link
G CPLANE1 ciliogenesis and planar polarity effector complex subunit 1 acts_upstream_of_or_within ISO (PMID:25877302) MGI PMID:25877302 NCBI chr 4:35,981,299...36,131,575
Ensembl chr 4:35,979,110...36,130,565 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20043884)
(PMID:12923052)		 Ensembl
MGI		 PMID:12923052 PMID:20043884 GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G ECE1 endothelin converting enzyme 1 involved_in ISO (PMID:9915973) BHF-UCL PMID:9915973 NCBI chr20:111,212,567...111,342,755
Ensembl chr20:111,212,594...111,342,821 		JBrowse link
G FBXW4 F-box and WD repeat domain containing 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9733575)
(PMID:10471509)		 Ensembl
MGI		 PMID:9733575 PMID:10471509 GO_REF:0000107 NCBI chr 9:94,634,721...94,722,156
Ensembl chr 9:94,635,347...94,721,439 		JBrowse link
G FLVCR1 FLVCR choline and heme transporter 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18258918) Ensembl
MGI		 PMID:18258918 GO_REF:0000107 NCBI chr25:16,656,219...16,688,397
Ensembl chr25:16,652,246...16,688,376 		JBrowse link
G FREM2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within ISO (PMID:26234751) MGI PMID:26234751 NCBI chr 3:17,121,063...17,310,149
Ensembl chr 3:17,129,126...17,300,363 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:19877275)
(PMID:27158779)		 MGI PMID:19877275 PMID:27158779 NCBI chr 6:42,968,715...42,975,374
Ensembl chr 6:42,969,000...42,975,368 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940), (PMID:17504941) MGI PMID:17504940 PMID:17504941 NCBI chr12:97,590,381...97,593,209
Ensembl chr12:97,591,762...97,592,805 		JBrowse link
G GJA1 gap junction protein alpha 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19439426) Ensembl
MGI		 PMID:19439426 GO_REF:0000107 NCBI chr13:52,397,291...52,410,341
Ensembl chr13:52,396,109...52,410,339 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:19056373) MGI PMID:19056373 NCBI chr10:9,302,890...9,561,287
Ensembl chr10:9,304,645...9,369,115 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9268572)
(PMID:22841643)
(PMID:16254602), (PMID:19036983), (PMID:9268572)
(PMID:17714700)		 Ensembl
MGI		 PMID:9268572 PMID:16254602 PMID:17714700 PMID:19036983 PMID:22841643 GO_REF:0000107 NCBI chr21:16,386,700...16,665,648
Ensembl chr21:16,549,789...16,662,238 		JBrowse link
G GNA12 G protein subunit alpha 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12077299) Ensembl
MGI		 PMID:12077299 GO_REF:0000107 NCBI chr28:18,778,768...18,890,420
Ensembl chr28:18,778,847...18,888,922 		JBrowse link
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (PMID:12077299) MGI PMID:12077299 NCBI chr12:88,666,375...88,988,989
Ensembl chr12:88,670,424...88,871,154 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21377456) MGI PMID:21377456 NCBI chr 8:96,340,459...96,526,366
Ensembl chr 8:96,342,189...96,526,363 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12070084) Ensembl
MGI		 PMID:12070084 GO_REF:0000107 NCBI chr 7:119,635,697...119,639,415
Ensembl chr 7:119,634,741...119,638,546 		JBrowse link
G HDAC1 histone deacetylase 1 involved_in ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr20:100,529,782...100,575,953
Ensembl chr20:100,530,369...100,558,556 		JBrowse link
G HDAC2 histone deacetylase 2 involved_in ISO (MGI:4889029|PMID:21093383)
(PMID:21093383)		 BHF-UCL PMID:21093383 MGI:4889029 NCBI chr13:59,873,248...59,904,542
Ensembl chr13:59,873,767...59,905,742 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12869760) Ensembl
MGI		 PMID:12869760 GO_REF:0000107 NCBI chr21:31,180,232...31,187,709
Ensembl chr21:31,183,682...31,186,010 		JBrowse link
G HOXC11 homeobox C11 involved_in IEA Ensembl GO_REF:0000107
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:8900279)
(PMID:12869760)
(PMID:17714700)		 MGI PMID:8900279 PMID:12869760 PMID:17714700 NCBI chr10:61,681,474...61,693,974
Ensembl chr10:61,682,400...61,684,168 		JBrowse link
G HOXD12 homeobox D12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8900279)
(PMID:17714700)		 Ensembl
MGI		 PMID:8900279 PMID:17714700 GO_REF:0000107 NCBI chr10:61,674,853...61,679,412
Ensembl chr10:61,674,864...61,675,819 		JBrowse link
G HOXD13 homeobox D13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17714700)
(PMID:8900279)
(PMID:9342042)		 Ensembl
MGI		 PMID:8900279 PMID:9342042 PMID:17714700 GO_REF:0000107 NCBI chr10:61,662,670...61,670,955
Ensembl chr10:61,667,880...61,669,743 		JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr22:51,528,383...51,616,757
Ensembl chr22:51,528,254...51,616,682 		JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chr 5:1,419,432...1,523,342
Ensembl chr 5:1,415,664...1,521,843 		JBrowse link
G IFT52 intraflagellar transport 52 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15930098) Ensembl
MGI		 PMID:15930098 GO_REF:0000107 NCBI chr 2:20,154,246...20,211,754
Ensembl chr 2:20,152,036...20,211,682 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:12701101), (PMID:16254602)
(PMID:15755804), (PMID:15930098)
(PMID:19036983)
(PMID:15930098)		 MGI PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 NCBI chr 3:435,649...546,661
Ensembl chr 3:436,207...546,583 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20660756) Ensembl
MGI		 PMID:20660756 GO_REF:0000107 NCBI chr10:104,960,296...104,966,596
Ensembl chr10:104,960,120...104,966,585 		JBrowse link
G INTU inturned planar cell polarity protein involved_in
acts_upstream_of_or_within		 ISO (PMID:27158779)
(PMID:25774014)		 GO_Central
MGI		 PMID:25774014 PMID:27158779 NCBI chr 7:74,749,929...74,844,078
Ensembl chr 7:74,759,929...74,843,989 		JBrowse link
G LMBR1 limb development membrane protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11606546) Ensembl
MGI		 PMID:11606546 GO_REF:0000107 NCBI chr21:124,819,580...125,032,058
Ensembl chr21:124,819,887...124,981,008 		JBrowse link
G LNPK lunapark, ER junction formation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9342042) Ensembl
MGI		 PMID:9342042 GO_REF:0000107 NCBI chr10:61,498,749...61,575,166
Ensembl chr10:61,499,617...61,574,794 		JBrowse link
G LOC103233314 transmembrane protein 231 acts_upstream_of_or_within ISO (PMID:22179047) MGI PMID:22179047 NCBI chr 5:61,023,700...61,043,183
Ensembl chr 5:61,025,388...61,042,792 		JBrowse link
G LOC103238414 uncharacterized LOC103238414 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chr11:50,076,648...50,087,084
Ensembl chr11:50,083,893...50,086,060 		JBrowse link
G LRP4 LDL receptor related protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16517118) Ensembl
MGI		 PMID:16517118 GO_REF:0000107 NCBI chr 1:18,393,489...18,474,514
Ensembl chr 1:18,413,513...18,471,444 		JBrowse link
G LRP5 LDL receptor related protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15142971) Ensembl
MGI		 PMID:15142971 GO_REF:0000107 NCBI chr 1:6,090,048...6,224,956
Ensembl chr 1:6,089,930...6,190,383 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512)
(PMID:15142971)		 MGI PMID:15142971 PMID:19795512 NCBI chr11:12,016,542...12,170,496
Ensembl chr11:12,021,560...12,170,663 		JBrowse link
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 involved_in ISO (PMID:26755636) UniProt PMID:26755636 NCBI chr10:58,573,303...58,764,759 JBrowse link
G MEGF8 multiple EGF like domains 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:32203821) MGI
Ensembl		 PMID:32203821 GO_REF:0000107 NCBI chr 6:36,529,848...36,580,213
Ensembl chr 6:36,530,014...36,582,525 		JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23454480)
(PMID:21045211)
(PMID:19776033)		 Ensembl
MGI		 PMID:19776033 PMID:21045211 PMID:23454480 GO_REF:0000107 NCBI chr16:35,182,276...35,196,167
Ensembl chr16:35,182,568...35,199,858 		JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21465616) Ensembl
MGI		 PMID:21465616 GO_REF:0000107 NCBI chr27:41,028,763...41,032,676
Ensembl chr27:41,028,919...41,033,006 		JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chr23:76,873,499...76,879,935
Ensembl chr23:76,873,669...76,879,553 		JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chr14:91,685,376...91,692,091 JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:36,816,783...36,818,693
Ensembl chr16:36,817,476...36,818,174 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:88,364,115...88,371,258
Ensembl chr14:88,364,166...88,371,263 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:93,831,218...93,839,098
Ensembl chr 8:93,831,480...93,839,263 		JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in ISO (PMID:23913870) MGI PMID:23913870 NCBI chr11:38,696,771...38,819,324
Ensembl chr11:38,694,602...38,718,519 		JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:15755804), (PMID:9636176) MGI PMID:9636176 PMID:15755804 NCBI chr17:14,383,064...14,418,144
Ensembl chr17:14,383,155...14,414,698 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:20660756) MGI PMID:20660756 NCBI chr12:102,172,288...102,397,297 JBrowse link
G SALL1 spalt like transcription factor 1 involved_in ISO (MGI:4461128|PMID:18470945)
(PMID:18470945)
(PMID:18280297)		 UniProt PMID:18280297 PMID:18470945 MGI:4461128 NCBI chr 5:36,928,711...36,944,158
Ensembl chr 5:36,927,990...36,943,630 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:18729207) MGI PMID:18729207 NCBI chr 7:100,336,442...100,345,093
Ensembl chr 7:100,336,119...100,345,086 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20660756)
(PMID:15930098)
(PMID:17504940), (PMID:17504941)		 Ensembl
MGI		 PMID:15930098 PMID:17504940 PMID:17504941 PMID:20660756 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SMAD4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:29,894,157...29,951,445
Ensembl chr18:29,897,621...29,934,478 		JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chr13:52,518,428...52,742,961 JBrowse link
G TBC1D32 TBC1 domain family member 32 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr13:52,519,851...52,668,754 JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:32,627,296...32,636,797
Ensembl chr16:32,627,819...32,636,880 		JBrowse link
G TBX3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:12116211), (PMID:9207801)
(PMID:27046536)
(PMID:23844108)		 UniProt
MGI		 PMID:9207801 PMID:12116211 PMID:23844108 PMID:27046536 NCBI chr11:109,952,100...109,966,328
Ensembl chr11:109,952,054...109,965,065 		JBrowse link
G TMEM107 transmembrane protein 107 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,554,771...7,558,413
Ensembl chr16:7,555,009...7,557,085 		JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chr10:124,348,763...124,428,522
Ensembl chr10:124,348,916...124,429,716 		JBrowse link
G TTBK2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (PMID:23141541) MGI PMID:23141541 NCBI chr26:40,048,802...40,228,083
Ensembl chr26:40,048,943...40,231,228 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674), (PMID:19334287) MGI PMID:19286674 PMID:19334287 NCBI chr11:2,956,762...3,005,309
Ensembl chr11:2,956,895...3,006,735 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15030764) Ensembl
MGI		 PMID:15030764 GO_REF:0000107 NCBI chr21:39,040,178...39,042,384
Ensembl chr21:39,040,547...39,041,146 		JBrowse link
G WDPCP WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within		 ISO (PMID:27158779)
(PMID:24302887)		 GO_Central
MGI		 PMID:24302887 PMID:27158779 NCBI chr14:43,425,405...43,896,015
Ensembl chr14:43,526,525...43,898,300 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chr22:16,809,454...16,836,815
Ensembl chr22:16,809,451...16,825,048 		JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:49,805,415...49,863,115
Ensembl chr22:49,805,463...49,862,830 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 ISO RGD PMID:19191224 RGD:2312786 NCBI chr 1:105,446,067...105,648,771
Ensembl chr 1:105,449,994...105,643,344 		JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS52 VPS52 subunit of GARP complex involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23142660) Ensembl
MGI		 PMID:23142660 GO_REF:0000107 NCBI chr17:38,805,072...38,824,526
Ensembl chr17:38,805,355...38,825,383 		JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:71,898,473...71,902,624
Ensembl chr 5:71,898,786...71,903,661 		JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RET ret proto-oncogene involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15569713) Ensembl
MGI		 PMID:15569713 GO_REF:0000107 NCBI chr 9:38,746,088...38,798,773
Ensembl chr 9:38,769,170...38,796,712 		JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15569713) Ensembl
MGI		 PMID:15569713 GO_REF:0000107 NCBI chr19:33,155,695...33,209,679
Ensembl chr19:33,155,770...33,208,224 		JBrowse link
G WNT4 Wnt family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16546160) Ensembl
MGI		 PMID:16546160 GO_REF:0000107 NCBI chr20:110,517,391...110,543,802
Ensembl chr20:110,517,564...110,541,203 		JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:16207763), (PMID:16611695) MGI PMID:16207763 PMID:16611695 NCBI chr12:83,949,529...84,092,452
Ensembl chr12:83,949,399...84,009,003 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within ISO (PMID:16611695)
(PMID:16207763), (PMID:16611695)		 MGI PMID:16207763 PMID:16611695 NCBI chr29:19,347,101...19,383,600 JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr29:19,352,008...19,383,622 JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:50,989,553...51,048,149
Ensembl chr14:50,989,795...51,048,708 		JBrowse link
G FBN1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr26:34,637,916...34,877,499
Ensembl chr26:34,638,838...34,879,217 		JBrowse link
G FBN2 fibrillin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:31,204,652...31,476,677
Ensembl chr23:31,204,391...31,475,820 		JBrowse link
G FOXL2 forkhead box L2 acts_upstream_of_or_within ISO (PMID:15056605) MGI PMID:15056605 NCBI chr15:51,595,806...51,598,124
Ensembl chr15:51,596,218...51,597,348 		JBrowse link
G MFAP2 microfibril associated protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:115,610,590...115,616,983
Ensembl chr20:115,610,808...115,617,506 		JBrowse link
G MFAP5 microfibril associated protein 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:8,470,233...8,485,537
Ensembl chr11:8,468,307...8,485,493 		JBrowse link
G RARB retinoic acid receptor beta acts_upstream_of_or_within ISO (PMID:16207763) MGI PMID:16207763 NCBI chr15:69,851,447...70,266,215
Ensembl chr15:70,096,117...70,264,905 		JBrowse link
G RARG retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:16207763) MGI PMID:16207763 NCBI chr11:49,319,104...49,340,725
Ensembl chr11:49,319,839...49,328,656 		JBrowse link
G VAX2 ventral anterior homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10595508)
(PMID:11830579)		 Ensembl
MGI		 PMID:10595508 PMID:11830579 GO_REF:0000107 NCBI chr14:36,180,084...36,213,534
Ensembl chr14:36,180,324...36,213,439 		JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:10921901) MGI PMID:10921901 NCBI chr15:923,222...962,438 JBrowse link
G ACVR2B activin A receptor type 2B involved_in IEA Ensembl GO_REF:0000107 Ensembl chr15:933,070...939,419 JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18692041) Ensembl
MGI		 PMID:18692041 GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794329) Ensembl
MGI		 PMID:18794329 GO_REF:0000107 NCBI chr10:10,113,695...10,288,003
Ensembl chr10:10,121,075...10,287,954 		JBrowse link
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11493558) Ensembl
MGI		 PMID:11493558 GO_REF:0000107 NCBI chr 5:71,898,473...71,902,624
Ensembl chr 5:71,898,786...71,903,661 		JBrowse link
G FOXP4 forkhead box P4 acts_upstream_of_or_within ISO (PMID:15361625) MGI PMID:15361625 NCBI chr17:30,554,702...30,608,845
Ensembl chr17:30,554,055...30,589,849 		JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933)
(PMID:9136932)		 MGI PMID:9136932 PMID:9136933 NCBI chr 8:7,348,145...7,432,574
Ensembl chr 8:7,349,660...7,400,562 		JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chr10:68,434,839...68,546,431
Ensembl chr10:68,433,258...68,545,990 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9731532) Ensembl
MGI		 PMID:9731532 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chr18:33,017,138...33,105,320
Ensembl chr18:33,017,492...33,104,606 		JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chr26:16,319,959...16,446,472
Ensembl chr26:16,320,933...16,446,527 		JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within		 ISO (MGI:4946573|PMID:21305474)
(PMID:19619492)
(PMID:18462699)		 BHF-UCL
MGI		 PMID:18462699 PMID:19619492 PMID:21305474 MGI:4946573 NCBI chr 8:50,523,816...50,527,360
Ensembl chr 8:50,524,893...50,527,847 		JBrowse link
embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:15069081), (PMID:20034106) MGI PMID:15069081 PMID:20034106 NCBI chr26:25,439,159...25,557,199
Ensembl chr26:25,439,360...25,557,202 		JBrowse link
G ALX3 ALX homeobox 3 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chr20:23,471,651...23,482,317
Ensembl chr20:23,471,736...23,481,543 		JBrowse link
G ALX4 ALX homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11641221) Ensembl
MGI		 PMID:11641221 GO_REF:0000107 NCBI chr 1:21,051,413...21,099,159
Ensembl chr 1:21,051,580...21,097,605 		JBrowse link
G CACNA1C calcium voltage-gated channel subunit alpha1 C involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:2,107,722...2,753,970
Ensembl chr11:2,508,705...2,752,991 		JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within ISO (PMID:7720575) MGI PMID:7720575 NCBI chr20:7,159,022...7,164,586
Ensembl chr20:7,159,238...7,164,163 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15371327) Ensembl
MGI		 PMID:15371327 GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G EN1 engrailed homeobox 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr10:11,475,221...11,479,475 JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22916278) Ensembl
MGI		 PMID:22916278 GO_REF:0000107 NCBI chr21:31,180,232...31,187,709
Ensembl chr21:31,183,682...31,186,010 		JBrowse link
G HOXA13 homeobox A13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15733672) Ensembl
MGI		 PMID:15733672 GO_REF:0000107 NCBI chr21:31,168,239...31,175,960
Ensembl chr21:31,168,793...31,173,056 		JBrowse link
G HOXA9 homeobox A9 acts_upstream_of_or_within ISO (PMID:8625797) MGI PMID:8625797 NCBI chr21:31,199,573...31,206,455
Ensembl chr21:31,203,422...31,206,433 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chr10:61,681,474...61,693,974
Ensembl chr10:61,682,400...61,684,168 		JBrowse link
G HOXD9 homeobox D9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8625797) Ensembl
MGI		 PMID:8625797 GO_REF:0000107 NCBI chr10:61,695,065...61,699,936
Ensembl chr10:61,697,271...61,699,933 		JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331)
(PMID:21209331)		 BHF-UCL PMID:21209331 MGI:4888042 NCBI chr22:51,528,383...51,616,757
Ensembl chr22:51,528,254...51,616,682 		JBrowse link
G LNPK lunapark, ER junction formation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22916278)
(PMID:9342042)		 Ensembl
MGI		 PMID:9342042 PMID:22916278 GO_REF:0000107 NCBI chr10:61,498,749...61,575,166
Ensembl chr10:61,499,617...61,574,794 		JBrowse link
G LOC103216935 uncharacterized LOC103216935 acts_upstream_of_or_within ISO (PMID:9362463) MGI PMID:9362463 NCBI chr10:11,470,295...11,558,688
Ensembl chr10:11,475,221...11,479,475 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15880584)
(PMID:18256198)
(PMID:19653321)
(PMID:11029008)		 MGI PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321 NCBI chr11:12,016,542...12,170,496
Ensembl chr11:12,021,560...12,170,663 		JBrowse link
G MECOM MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chr15:19,726,423...20,320,832
Ensembl chr15:20,256,384...20,320,834 		JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21465616) Ensembl
MGI		 PMID:21465616 GO_REF:0000107 NCBI chr27:41,028,763...41,032,676
Ensembl chr27:41,028,919...41,033,006 		JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chr23:76,873,499...76,879,935
Ensembl chr23:76,873,669...76,879,553 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:35,748,112...35,940,075
Ensembl chr 4:35,829,386...35,941,271 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:88,364,115...88,371,258
Ensembl chr14:88,364,166...88,371,263 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:93,831,218...93,839,098
Ensembl chr 8:93,831,480...93,839,263 		JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17473173) Ensembl
MGI		 PMID:17473173 GO_REF:0000107 NCBI chr 8:68,903,665...68,933,536
Ensembl chr 8:68,904,352...68,933,792 		JBrowse link
G RECK reversion inducing cysteine rich protein with kazal motifs acts_upstream_of_or_within ISO (PMID:23213437) MGI PMID:23213437 NCBI chr12:44,431,807...44,517,893
Ensembl chr12:44,431,615...44,517,810 		JBrowse link
G RPGRIP1L RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17553904) MGI PMID:17553904 NCBI chr 5:39,388,632...39,487,223
Ensembl chr 5:39,387,107...39,487,092 		JBrowse link
G RSPO2 R-spondin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18256198) Ensembl
MGI		 PMID:18256198 GO_REF:0000107 NCBI chr 8:102,632,060...102,804,181
Ensembl chr 8:102,632,060...102,801,911 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22916278) Ensembl
MGI		 PMID:22916278 GO_REF:0000107 NCBI chr17:26,679,386...26,807,812
Ensembl chr17:26,683,175...26,807,319 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11118883), (PMID:11476582) Ensembl
MGI		 PMID:11118883 PMID:11476582 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22916278) Ensembl
MGI		 PMID:22916278 GO_REF:0000107 NCBI chr15:32,684,598...32,694,640
Ensembl chr15:32,684,705...32,692,699 		JBrowse link
G TBX3 T-box transcription factor 3 involved_in ISO (PMID:12116211) UniProt PMID:12116211 NCBI chr11:109,952,100...109,966,328
Ensembl chr11:109,952,054...109,965,065 		JBrowse link
G TBX5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within		 ISO (PMID:16183809)
(PMID:11572777), (PMID:12490567)		 UniProt
MGI		 PMID:11572777 PMID:12490567 PMID:16183809 NCBI chr11:109,638,694...109,696,619
Ensembl chr11:109,638,715...109,689,177 		JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISO (MGI:1313057|PMID:9811866)
(PMID:9811866)		 UniProt PMID:9811866 MGI:1313057 NCBI chr17:61,750,757...61,769,041 JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within ISO (PMID:25503409) MGI PMID:25503409 NCBI chr15:83,861,489...84,126,675 JBrowse link
G TP63 tumor protein p63 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr15:84,093,957...84,123,905 JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12175489) Ensembl
MGI		 PMID:12175489 GO_REF:0000107 NCBI chr21:39,040,178...39,042,384
Ensembl chr21:39,040,547...39,041,146 		JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9362463)
(PMID:15880584)		 MGI
Ensembl		 PMID:9362463 PMID:15880584 GO_REF:0000107 MGI:48652 NCBI chr22:49,805,415...49,863,115
Ensembl chr22:49,805,463...49,862,830 		JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of_or_within ISO (PMID:15371327) MGI PMID:15371327 NCBI chr25:1,759,047...1,787,510
Ensembl chr25:1,781,826...1,788,663 		JBrowse link
embryonic genitalia morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12004962) Ensembl
MGI		 PMID:12004962 GO_REF:0000107 NCBI chr 4:43,080,387...43,163,355
Ensembl chr 4:43,081,831...43,163,432 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chr12:102,172,288...102,397,297 JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chr23:36,919,648...36,953,088
Ensembl chr23:36,919,745...36,951,192 		JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chr 9:105,828,834...106,047,810 JBrowse link
embryonic heart tube development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APELA apelin receptor early endogenous ligand involved_in ISO (MGI:5909243|PMID:28854362), (MGI:5913613|PMID:28663440) UniProt PMID:28663440 PMID:28854362 MGI:5909243 MGI:5913613
G CDC42 cell division cycle 42 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:110,568,004...110,608,318
Ensembl chr20:110,569,352...110,582,562 		JBrowse link
G CHRD chordin involved_in ISO (PMID:17685487) MGI PMID:17685487 NCBI chr15:5,030,618...5,040,399
Ensembl chr15:5,030,457...5,039,991 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18231602) Ensembl
MGI		 PMID:18231602 GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G ECE1 endothelin converting enzyme 1 involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chr20:111,212,567...111,342,755
Ensembl chr20:111,212,594...111,342,821 		JBrowse link
G EDN1 endothelin 1 involved_in ISO (PMID:24875861)
(PMID:30735130)
(PMID:24875861), (PMID:31219639)		 MGI PMID:24875861 PMID:30735130 PMID:31219639 NCBI chr17:59,854,186...59,861,319
Ensembl chr17:59,853,699...59,861,198 		JBrowse link
G EDNRA endothelin receptor type A involved_in ISO (PMID:20929948)
(PMID:30735130)
(PMID:24875861)
(PMID:24875861), (PMID:31219639)		 MGI PMID:20929948 PMID:24875861 PMID:30735130 PMID:31219639 NCBI chr 7:93,980,983...94,043,863
Ensembl chr 7:93,985,797...94,042,296 		JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16720879) Ensembl
TreeGrafter
MGI		 PMID:16720879 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:94,797,157...94,803,725
Ensembl chr 9:94,798,088...94,803,629 		JBrowse link
G FOXC1 forkhead box C1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16678147) Ensembl
MGI		 PMID:16678147 GO_REF:0000107 NCBI chr17:70,533,048...70,536,555
Ensembl chr17:70,534,821...70,536,476 		JBrowse link
G FOXC2 forkhead box C2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16678147) Ensembl
MGI		 PMID:16678147 GO_REF:0000107 NCBI chr 5:71,951,980...71,955,021
Ensembl chr 5:71,952,632...71,954,134 		JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933)
(PMID:9136932)		 MGI PMID:9136932 PMID:9136933 NCBI chr 8:7,348,145...7,432,574
Ensembl chr 8:7,349,660...7,400,562 		JBrowse link
G GJA1 gap junction protein alpha 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14732399) Ensembl
MGI		 PMID:14732399 GO_REF:0000107 NCBI chr13:52,397,291...52,410,341
Ensembl chr13:52,396,109...52,410,339 		JBrowse link
G GJA5 gap junction protein alpha 5 acts_upstream_of_or_within ISO (PMID:22203979)
(PMID:14732399)		 MGI PMID:14732399 PMID:22203979
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9500551) Ensembl
MGI		 PMID:9500551 GO_REF:0000107 NCBI chr23:56,928,164...56,935,675
Ensembl chr23:56,928,676...56,931,785 		JBrowse link
G HHEX hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:15459110) MGI PMID:15459110 NCBI chr 9:85,957,684...85,963,414
Ensembl chr 9:85,957,779...85,963,404 		JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668)
(PMID:19000668)		 UniProt PMID:19000668 MGI:3827087 NCBI chr22:51,528,383...51,616,757
Ensembl chr22:51,528,254...51,616,682 		JBrowse link
G LOC103246325 cell division control protein 42 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:34,420,934...34,422,472 JBrowse link
G MED1 mediator complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14500757) Ensembl
MGI		 PMID:14500757 GO_REF:0000107 NCBI chr16:66,719,393...66,764,902
Ensembl chr16:66,719,423...66,762,896 		JBrowse link
G MEF2C myocyte enhancer factor 2C involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chr 4:82,702,378...82,887,491
Ensembl chr 4:82,706,738...82,788,152 		JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chr10:68,434,839...68,546,431
Ensembl chr10:68,433,258...68,545,990 		JBrowse link
G NKX2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15843414) Ensembl
MGI		 PMID:15843414 GO_REF:0000107 NCBI chr23:75,391,833...75,399,003
Ensembl chr23:75,391,847...75,395,205 		JBrowse link
G NKX2-6 NK2 homeobox 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:21,820,940...21,827,124
Ensembl chr 8:21,821,711...21,825,801 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chr 9:60,852,567...60,863,225
Ensembl chr 9:60,853,763...60,862,839 		JBrowse link
G PCNT pericentrin acts_upstream_of_or_within ISO (PMID:25220058) MGI PMID:25220058 NCBI chr 2:89,934,888...90,046,767
Ensembl chr 2:89,936,210...90,046,328 		JBrowse link
G PLXNA4 plexin A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:100,779,307...101,223,184
Ensembl chr21:100,781,779...101,158,801 		JBrowse link
G SLC8A1 solute carrier family 8 member A1 acts_upstream_of_or_within ISO (PMID:21302256) MGI PMID:21302256 NCBI chr14:66,813,523...67,210,261 JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:17610846) MGI PMID:17610846 NCBI chr 8:50,523,816...50,527,360
Ensembl chr 8:50,524,893...50,527,847 		JBrowse link
G SOX18 SRY-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:17610846) MGI PMID:17610846 NCBI chr 2:195,418...197,221 JBrowse link
G TBX20 T-box transcription factor 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15843414) Ensembl
MGI		 PMID:15843414 GO_REF:0000107 NCBI chr21:23,166,020...23,222,416
Ensembl chr21:23,166,109...23,224,657 		JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:23844108) MGI PMID:23844108 NCBI chr11:109,952,100...109,966,328
Ensembl chr11:109,952,054...109,965,065 		JBrowse link
G TMEM94 transmembrane protein 94 acts_upstream_of_or_within ISO (PMID:30526868) MGI PMID:30526868 NCBI chr16:46,178,237...46,223,931
Ensembl chr16:46,177,181...46,202,463 		JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chr10:124,348,763...124,428,522
Ensembl chr10:124,348,916...124,429,716 		JBrowse link
embryonic heart tube elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TBX20 T-box transcription factor 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:23,166,020...23,222,416
Ensembl chr21:23,166,109...23,224,657 		JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11076684) Ensembl
MGI		 PMID:11076684 GO_REF:0000107 NCBI chr23:56,928,164...56,935,675
Ensembl chr23:56,928,676...56,931,785 		JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CIMAP3 ciliary microtubule associated protein 3 acts_upstream_of_or_within ISO (PMID:20643351) MGI PMID:20643351 NCBI chr20:22,250,933...22,269,420
Ensembl chr20:22,249,682...22,256,695 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:34,009,527...34,011,924
Ensembl chr13:34,010,228...34,011,046 		JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331)
(PMID:21209331)		 CACAO PMID:21209331 MGI:4888042 NCBI chr22:51,528,383...51,616,757
Ensembl chr22:51,528,254...51,616,682 		JBrowse link
G INVS inversin acts_upstream_of_or_within ISO (PMID:9192865) MGI PMID:9192865 NCBI chr12:39,138,586...39,333,758
Ensembl chr12:39,139,505...39,333,661 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:36,529,848...36,580,213
Ensembl chr 6:36,530,014...36,582,525 		JBrowse link
G NKX2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9192865) Ensembl
MGI		 PMID:9192865 GO_REF:0000107 NCBI chr23:75,391,833...75,399,003
Ensembl chr23:75,391,847...75,395,205 		JBrowse link
G PITX2 paired like homeodomain 2 involved_in ISO (MGI:3783941|PMID:17234970)
(PMID:17234970)		 BHF-UCL PMID:17234970 MGI:3783941 NCBI chr 7:58,501,669...58,526,413
Ensembl chr 7:58,501,559...58,507,318 		JBrowse link
embryonic heart tube morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in ISO (PMID:19506109) BHF-UCL PMID:19506109 NCBI chr10:43,139,396...43,281,024
Ensembl chr10:43,139,528...43,281,177 		JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:88,220,093...88,222,563