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ONTOLOGY REPORT - ANNOTATIONS


Term:embryo development
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Accession:GO:0009790 term browser browse the term
Definition:The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
Synonyms:exact_synonym: embryogenesis;   embryonal development
 synonym: Not4Curation
 broad_synonym: embryogenesis and morphogenesis
 alt_id: GO:0009795
 xref: Wikipedia:Embryogenesis



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activation of prostate induction by androgen receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AR androgen receptor acts_upstream_of_or_within ISO (MGI:3714080|PMID:17317769) MGI PMID:17317769 MGI:3714080 NCBI chr24:34,713,390...34,731,461
NCBI chr  X:51,969,785...52,167,450
Ensembl chr  X:51,969,785...52,151,912
JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASP3 caspase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5050793|PMID:21515572) Ensembl
MGI
Ensembl
PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr16:45,920,074...45,940,507
Ensembl chr16:45,920,071...45,940,505
JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5050793|PMID:21515572) Ensembl
MGI
PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr13:3,204,898...3,362,533
Ensembl chr13:3,204,925...3,362,096
JBrowse link
G LOC609612 folate receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:25,944,350...25,951,010 JBrowse link
G SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like acts_upstream_of_or_within ISO (MGI:6101898|PMID:26787558) MGI PMID:26787558 MGI:6101898 NCBI chr26:27,994,278...28,127,383
Ensembl chr26:28,025,987...28,125,695
JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATAD2A GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chr20:43,736,471...43,853,505
Ensembl chr20:43,739,849...43,846,370
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:80520|PMID:8622765) MGI PMID:8622765 MGI:80520 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3580203|PMID:15870281) Ensembl
Ensembl
MGI
PMID:15870281 GO_REF:0000107 MGI:3580203 NCBI chr10:11,445,843...11,552,325
Ensembl chr10:11,539,994...11,552,890
JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:16,123,788...16,126,634
Ensembl chr37:16,123,798...16,125,567
JBrowse link
G TASOR transcription activation suppressor involved_in ISO (MGI:6109647|PMID:28839193) UniProt PMID:28839193 MGI:6109647 NCBI chr20:33,665,231...33,713,264
Ensembl chr20:33,646,000...33,712,936
JBrowse link
G TBX3 T-box transcription factor 3 involved_in ISO (PMID:9207801) UniProt PMID:9207801 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
JBrowse link
G TCF7L1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:3043490 NCBI chr17:39,699,958...39,859,167
Ensembl chr17:39,699,958...39,858,182
JBrowse link
G TDGF1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO (MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:1303194 NCBI chr20:42,137,939...42,140,590 JBrowse link
G WNT5A Wnt family member 5A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3581932|PMID:15967824) MGI
Ensembl
PMID:15967824 GO_REF:0000107 MGI:3581932 NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464
JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within ISO (MGI:3581932|PMID:15967824) MGI PMID:15967824 MGI:3581932 NCBI chr17:35,619,804...35,665,782
Ensembl chr17:35,619,582...35,664,587
JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:3608163|PMID:16245338) MGI PMID:16245338 MGI:3608163 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR96 microRNA mir-96 acts_upstream_of_or_within ISO (MGI:4353582|PMID:19363478) MGI PMID:19363478 MGI:4353582 NCBI chr14:7,068,754...7,068,842
Ensembl chr14:7,068,754...7,068,842
JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (MGI:4430014|PMID:20016102) MGI PMID:20016102 MGI:4430014 NCBI chr 6:11,726,259...11,758,532
Ensembl chr 6:11,655,494...11,757,216
JBrowse link
G SCRIB scribble planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chr13:37,356,405...37,374,765
Ensembl chr13:37,356,405...37,374,681
JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chr32:29,671,702...29,766,628
Ensembl chr32:29,671,738...29,772,192
JBrowse link
G SLITRK6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (MGI:4413621|PMID:19936227) MGI PMID:19936227 MGI:4413621 NCBI chr22:37,911,533...37,918,273
Ensembl chr22:37,912,612...37,925,177
JBrowse link
G WDPCP WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO (MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:5544506 NCBI chr10:62,894,818...63,316,555
Ensembl chr10:62,877,527...63,316,345
JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANAPC2 anaphase promoting complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:48,475,777...48,486,715
Ensembl chr 9:48,471,584...48,609,303
JBrowse link
G ANAPC2 anaphase promoting complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:48,488,897...48,490,044
Ensembl chr 9:48,471,584...48,609,303
JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (MGI:3709803|PMID:11875276) MGI PMID:11875276 MGI:3709803 NCBI chr20:7,665,468...8,037,407
Ensembl chr20:7,749,807...8,034,474
JBrowse link
G CDH23 cadherin related 23 acts_upstream_of_or_within ISO (MGI:3625226|PMID:12121736)
(MGI:75953|PMID:7610888), (MGI:81497|PMID:8790740), (MGI:86134|PMID:9039475)
(MGI:3526751|PMID:15537665)
(MGI:1933915|PMID:11322776)
(MGI:1929001|PMID:11138008), (MGI:3686545|PMID:17050716), (MGI:5468200|PMID:23217710)
MGI PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... MGI:1929001 MGI:1933915 MGI:3526751 MGI:3625226 MGI:3686545 MGI:5468200 MGI:75953 MGI:81497 MGI:86134 NCBI chr 4:22,206,972...22,570,875
Ensembl chr 4:22,207,001...22,571,131
JBrowse link
G CLIC5 chloride intracellular channel 5 acts_upstream_of_or_within ISO (MGI:3663248|PMID:17021174) MGI PMID:17021174 MGI:3663248 NCBI chr12:14,160,524...14,318,174
Ensembl chr12:14,144,390...14,318,582
JBrowse link
G CLRN1 clarin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3849925|PMID:19414487), (MGI:4353469|PMID:19423712) Ensembl
MGI
PMID:19414487 PMID:19423712 GO_REF:0000107 MGI:3849925 MGI:4353469 NCBI chr23:45,512,639...45,551,010
Ensembl chr23:45,513,416...45,551,178
JBrowse link
G CLRN2 clarin 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:62,958,242...62,967,878
Ensembl chr 3:62,959,224...62,967,994
JBrowse link
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6278501|PMID:30380417) Ensembl
MGI
Ensembl
PMID:30380417 GO_REF:0000107 MGI:6278501 NCBI chr 2:40,310,285...40,330,200
Ensembl chr 2:40,315,807...40,328,240
JBrowse link
G LHFPL5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3578102|PMID:15905332)
(MGI:3759710|PMID:17876667), (MGI:5468200|PMID:23217710)
MGI
Ensembl
PMID:15905332 PMID:17876667 PMID:23217710 GO_REF:0000107 MGI:3578102 MGI:3759710 MGI:5468200 NCBI chr12:4,919,732...4,936,823
Ensembl chr12:4,902,832...4,936,413
JBrowse link
G MYO3A myosin IIIA involved_in ISO (MGI:5766107|PMID:26754646) MGI PMID:26754646 MGI:5766107 NCBI chr 2:7,455,125...7,695,483
Ensembl chr 2:7,455,625...7,696,043
JBrowse link
G MYO3B myosin IIIB involved_in ISO (MGI:5766107|PMID:26754646) MGI PMID:26754646 MGI:5766107 NCBI chr36:14,804,662...15,229,597
Ensembl chr36:14,803,514...15,209,820
JBrowse link
G MYO7A myosin VIIA acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3625226|PMID:12121736)
(MGI:2156358|PMID:11753415)
(MGI:3686545|PMID:17050716)
MGI
Ensembl
Ensembl
PMID:11753415 PMID:12121736 PMID:17050716 GO_REF:0000107 MGI:2156358 MGI:3625226 MGI:3686545 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279
JBrowse link
G PCDH15 protocadherin related 15 acts_upstream_of_or_within ISO (MGI:5468200|PMID:23217710)
(MGI:3619110|PMID:11124469)
(MGI:3654702|PMID:16887306)
(MGI:1928787|PMID:10978835)
(MGI:3526751|PMID:15537665)
MGI PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 MGI:1928787 MGI:3526751 MGI:3619110 MGI:3654702 MGI:5468200 NCBI chr26:33,426,728...34,589,208
Ensembl chr26:33,719,839...34,588,017
JBrowse link
G PDZD7 PDZ domain containing 7 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:5565635|PMID:24334608)
(PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:24334608 MGI:5565635 NCBI chr28:13,693,032...13,711,654
Ensembl chr28:13,693,023...13,711,784
JBrowse link
G PLS1 plastin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr23:38,243,631...38,347,195
Ensembl chr23:38,243,024...38,347,202
JBrowse link
G REST RE1 silencing transcription factor involved_in ISO (MGI:6193260|PMID:29961578) UniProt PMID:29961578 MGI:6193260 NCBI chr13:49,041,082...49,062,596
Ensembl chr13:49,041,047...49,059,388
JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 involved_in ISO (MGI:5789047|PMID:27269051) UniProt PMID:27269051 MGI:5789047 NCBI chr35:22,823,053...23,041,765
Ensembl chr35:22,824,106...23,041,743
JBrowse link
G SCRIB scribble planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chr13:37,356,405...37,374,765
Ensembl chr13:37,356,405...37,374,681
JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chr32:29,671,702...29,766,628
Ensembl chr32:29,671,738...29,772,192
JBrowse link
G SLC9A3R1 SLC9A3 regulator 1 acts_upstream_of_or_within ISO (MGI:5578076|PMID:24920589) MGI PMID:24920589 MGI:5578076 NCBI chr 9:5,661,792...5,679,783
Ensembl chr 9:5,662,464...5,679,570
JBrowse link
G SOD1 superoxide dismutase 1 acts_upstream_of_or_within ISO (MGI:1344578|PMID:10466888), (MGI:3700629|PMID:10464373) MGI PMID:10464373 PMID:10466888 MGI:1344578 MGI:3700629 NCBI chr31:26,540,291...26,544,212
Ensembl chr31:26,486,274...26,662,815
JBrowse link
G STRC stereocilin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3818235|PMID:18849963) MGI
Ensembl
PMID:18849963 GO_REF:0000107 MGI:3818235 NCBI chr30:10,444,726...10,459,058
Ensembl chr30:10,444,793...10,460,785
JBrowse link
G TPRN taperin acts_upstream_of_or_within ISO (MGI:6278501|PMID:30380417) MGI PMID:30380417 MGI:6278501
G TRIOBP TRIO and F-actin binding protein acts_upstream_of_or_within ISO (MGI:4881391|PMID:20510926) MGI PMID:20510926 MGI:4881391 NCBI chr10:26,856,981...26,913,330
Ensembl chr10:26,857,678...26,911,083
JBrowse link
G WHRN whirlin acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:5796227|PMID:27117407)
(PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:27117407 MGI:5796227 NCBI chr11:68,617,383...68,699,824
Ensembl chr11:68,617,377...68,699,977
JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:894149|PMID:9230313) MGI
Ensembl
PMID:9230313 GO_REF:0000107 MGI:894149 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343
JBrowse link
G EPHA2 EPH receptor A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1934524|PMID:11287184) MGI
Ensembl
PMID:11287184 GO_REF:0000107 MGI:1934524 NCBI chr 2:81,534,130...81,561,722
Ensembl chr 2:81,534,125...81,561,725
JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2677178|PMID:14511481) MGI
Ensembl
PMID:14511481 GO_REF:0000107 MGI:2677178 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G MED12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839483|PMID:20630950) MGI PMID:20630950 MGI:4839483 NCBI chr  X:55,487,629...55,508,941
Ensembl chr  X:55,482,013...55,509,992
JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412
JBrowse link
blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1B1 ATPase Na+/K+ transporting subunit beta 1 acts_upstream_of_or_within ISO MGI MGI:1888635 NCBI chr 7:29,464,132...29,487,124
Ensembl chr 7:29,464,132...29,487,947
JBrowse link
G BNIP2 BCL2 interacting protein 2 acts_upstream_of_or_within ISO (MGI:3848119|PMID:19117032) MGI PMID:19117032 MGI:3848119 NCBI chr30:24,522,397...24,546,968
Ensembl chr30:24,503,092...24,539,440
JBrowse link
G CAPN2 calpain 2 acts_upstream_of_or_within ISO (MGI:3620446|PMID:16433929) MGI PMID:16433929 MGI:3620446 NCBI chr 7:40,333,379...40,367,158
Ensembl chr 7:40,334,012...40,377,037
JBrowse link
G CDX2 caudal type homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3578587|PMID:15788452) MGI
Ensembl
PMID:15788452 GO_REF:0000107 MGI:3578587 NCBI chr25:11,701,134...11,707,883
Ensembl chr25:11,700,779...11,707,127
JBrowse link
G DAD1 defender against cell death 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1858316|PMID:10748466) MGI
Ensembl
Ensembl
PMID:10748466 GO_REF:0000107 MGI:1858316 NCBI chr 8:2,963,719...2,984,978 JBrowse link
G DMBT1 deleted in malignant brain tumors 1 acts_upstream_of_or_within ISO (MGI:3057099|PMID:15452149) MGI PMID:15452149 MGI:3057099 NCBI chr28:32,198,250...32,286,517
Ensembl chr28:32,219,448...32,286,532
JBrowse link
G ELF3 E74 like ETS transcription factor 3 acts_upstream_of_or_within ISO (MGI:3624255|PMID:16630543) MGI PMID:16630543 MGI:3624255 NCBI chr 7:959,408...965,533
Ensembl chr 7:859,585...963,788
JBrowse link
G EMG1 EMG1 N1-specific pseudouridine methyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4839400|PMID:20858271) Ensembl
Ensembl
MGI
PMID:20858271 GO_REF:0000107 MGI:4839400 NCBI chr27:38,069,089...38,075,577
Ensembl chr27:38,068,231...38,076,300
JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within ISO (MGI:3578587|PMID:15788452) MGI PMID:15788452 MGI:3578587 NCBI chr23:16,476,498...16,512,406
Ensembl chr23:16,506,032...16,511,527
JBrowse link
G ETV2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (MGI:3624255|PMID:16630543) MGI PMID:16630543 MGI:3624255 NCBI chr 1:116,971,238...116,974,831
Ensembl chr 1:116,971,365...116,985,796
JBrowse link
G G2E3 G2/M-phase specific E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (MGI:3807157|PMID:18511420) MGI PMID:18511420 MGI:3807157 NCBI chr 8:9,914,276...9,968,798
Ensembl chr 8:9,914,008...9,965,623
JBrowse link
G GDF9 growth differentiation factor 9 involved_in ISO (PMID:24313324) AgBase PMID:24313324 NCBI chr11:21,143,982...21,148,945
Ensembl chr11:21,143,975...21,149,825
JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:55,231,061...55,234,640
Ensembl chr 4:55,231,481...55,234,265
JBrowse link
G HNF1A HNF1 homeobox A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3653309|PMID:16880268) Ensembl
MGI
PMID:16880268 GO_REF:0000107 MGI:3653309 NCBI chr26:16,805,690...16,826,065
Ensembl chr26:16,805,690...16,824,790
JBrowse link
G HORMAD1 HORMA domain containing 1 involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr17:59,860,527...59,883,031
Ensembl chr17:59,860,934...59,882,980
JBrowse link
G KPNA7 karyopherin subunit alpha 7 acts_upstream_of_or_within ISO (MGI:5913752|PMID:20699224) MGI PMID:20699224 MGI:5913752 NCBI chr 6:10,344,320...10,363,755
Ensembl chr 6:10,329,617...10,363,624
JBrowse link
G LOC489591 cyclin-dependent kinase 11B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3041915|PMID:15060143) MGI
Ensembl
Ensembl
PMID:15060143 GO_REF:0000107 MGI:3041915 NCBI chr 5:56,698,267...56,714,075 JBrowse link
G MED21 mediator complex subunit 21 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1345774|PMID:10500093) MGI
Ensembl
Ensembl
PMID:10500093 GO_REF:0000107 MGI:1345774 NCBI chr27:20,611,263...20,619,215
Ensembl chr27:20,612,295...20,619,130
JBrowse link
G N4BP2L2 NEDD4 binding protein 2 like 2 acts_upstream_of_or_within ISO (MGI:3797340|PMID:18360097) MGI PMID:18360097 MGI:3797340 NCBI chr25:7,622,032...7,694,396
Ensembl chr25:7,623,670...7,694,398
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (MGI:3694318|PMID:16728391) UniProt PMID:16728391 MGI:3694318 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G NEK2 NIMA related kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3848119|PMID:19117032) Ensembl
Ensembl
MGI
PMID:19117032 GO_REF:0000107 MGI:3848119 NCBI chr 7:10,039,617...10,052,511
Ensembl chr 7:10,040,187...10,052,512
JBrowse link
G NLRP9 NLR family pyrin domain containing 9 acts_upstream_of_or_within ISO (MGI:6507372|PMID:32413845) MGI PMID:32413845 MGI:6507372 NCBI chr 1:102,013,911...102,036,700
Ensembl chr 1:102,013,909...102,036,811
JBrowse link
G NPM2 nucleophosmin/nucleoplasmin 2 involved_in ISO (PMID:12714744) UniProt PMID:12714744 NCBI chr25:35,204,905...35,226,226 JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 acts_upstream_of_or_within ISO (MGI:1860964|PMID:10945464) MGI PMID:10945464 MGI:1860964 NCBI chr18:42,212,083...42,218,958 JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1860964|PMID:10945464) Ensembl
Ensembl
MGI
PMID:10945464 GO_REF:0000107 MGI:1860964 NCBI chr 1:113,548,351...113,557,725
Ensembl chr 1:113,548,373...113,557,630
JBrowse link
G RPL13 ribosomal protein L13 involved_in
acts_upstream_of
IEA
ISO
(MGI:6116315|PMID:26902285) Ensembl
MGI
Ensembl
PMID:26902285 GO_REF:0000107 MGI:6116315 NCBI chr 5:63,978,424...63,980,698
Ensembl chr 5:63,978,424...63,980,603
JBrowse link
G RRM2 ribonucleotide reductase regulatory subunit M2 acts_upstream_of ISO (MGI:6116315|PMID:26902285) MGI PMID:26902285 MGI:6116315 NCBI chr17:7,106,515...7,113,868
Ensembl chr17:7,104,961...7,122,939
JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1932782|PMID:11263494)
(MGI:1933896|PMID:11313485)
MGI
Ensembl
PMID:11263494 PMID:11313485 GO_REF:0000107 MGI:1932782 MGI:1933896 NCBI chr26:28,692,610...28,728,778
Ensembl chr26:28,692,899...28,728,783
JBrowse link
G SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 acts_upstream_of_or_within ISO (MGI:6726619|PMID:34166821) MGI PMID:34166821 MGI:6726619 NCBI chr 5:39,936,851...40,163,249
Ensembl chr 5:39,940,165...40,137,627
JBrowse link
G SPIC Spi-C transcription factor acts_upstream_of_or_within ISO (MGI:3624255|PMID:16630543) MGI PMID:16630543 MGI:3624255 NCBI chr15:40,443,132...40,453,894
Ensembl chr15:40,442,945...40,453,334
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1326851|PMID:9921650) MGI
Ensembl
PMID:9921650 GO_REF:0000107 MGI:1326851 NCBI chr11:56,191,383...56,223,042
Ensembl chr11:56,161,772...56,218,594
JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (MGI:1326851|PMID:9921650) MGI PMID:9921650 MGI:1326851 NCBI chr 6:57,025,096...57,220,240
Ensembl chr 6:57,025,112...57,217,121
JBrowse link
G THOC2 THO complex 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5529717|PMID:24315442) Ensembl
MGI
PMID:24315442 GO_REF:0000107 MGI:5529717 NCBI chr  X:95,087,209...95,217,450
Ensembl chr  X:95,095,711...95,199,747
JBrowse link
G THOC5 THO complex 5 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) MGI PMID:24315442 MGI:5529717 NCBI chr26:22,748,857...22,785,288
Ensembl chr26:22,748,895...22,784,143
JBrowse link
G XAB2 XPA binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3574001|PMID:15725628) Ensembl
Ensembl
MGI
PMID:15725628 GO_REF:0000107 MGI:3574001 NCBI chr20:52,392,521...52,406,071
Ensembl chr20:52,392,566...52,405,997
JBrowse link
G YAP1 Yes1 associated transcriptional regulator acts_upstream_of ISO (MGI:6116315|PMID:26902285) MGI PMID:26902285 MGI:6116315 NCBI chr 5:29,394,760...29,495,977
Ensembl chr 5:29,394,541...29,496,251
JBrowse link
blastocyst formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5913376|PMID:27869233) MGI
Ensembl
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr34:12,922,506...12,988,334
Ensembl chr34:12,960,699...12,987,962
JBrowse link
G BYSL bystin like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3700849|PMID:17242206) MGI
Ensembl
PMID:17242206 GO_REF:0000107 MGI:3700849 NCBI chr12:10,580,881...10,592,313
Ensembl chr12:10,581,217...10,591,923
JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 acts_upstream_of_or_within ISO (MGI:3757893|PMID:17784788) MGI PMID:17784788 MGI:3757893 NCBI chr15:17,673,065...17,701,701
Ensembl chr15:17,673,609...17,695,336
JBrowse link
G FURIN furin, paired basic amino acid cleaving enzyme involved_in ISO (MGI:5702364|PMID:26416966) CACAO PMID:26416966 MGI:5702364 NCBI chr 3:53,357,491...53,368,285
Ensembl chr 3:53,358,045...53,365,423
JBrowse link
G GABPA GA binding protein transcription factor subunit alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5913376|PMID:27869233) MGI
Ensembl
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr31:21,216,931...21,251,658
Ensembl chr31:21,216,710...21,248,792
JBrowse link
G KDM4C lysine demethylase 4C acts_upstream_of_or_within ISO (MGI:4421125|PMID:19696013) MGI PMID:19696013 MGI:4421125 NCBI chr11:27,662,764...28,101,432
Ensembl chr11:27,693,536...28,101,801
JBrowse link
G MATR3 matrin 3 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr11:26,736,728...26,790,449
Ensembl chr11:26,758,261...26,790,449
JBrowse link
G MFN2 mitofusin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3587532|PMID:16083859) Ensembl
Ensembl
MGI
PMID:16083859 GO_REF:0000107 MGI:3587532 NCBI chr 2:84,284,719...84,310,715
Ensembl chr 2:84,284,719...84,308,225
JBrowse link
G MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr10:27,082,616...27,098,994
Ensembl chr10:27,082,789...27,098,617
JBrowse link
G MXI1 MAX interactor 1, dimerization protein acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr28:21,584,856...21,655,233
Ensembl chr28:21,584,638...21,652,920
JBrowse link
G NOP2 NOP2 nucleolar protein acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr27:38,441,259...38,453,946
Ensembl chr27:38,441,690...38,453,824
JBrowse link
G PBRM1 polybromo 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr20:37,110,437...37,231,676
Ensembl chr20:37,110,766...37,229,203
JBrowse link
G PNLDC1 PARN like ribonuclease domain containing exonuclease 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 1:49,045,153...49,063,008
Ensembl chr 1:49,044,979...49,062,802
JBrowse link
G PRICKLE2 prickle planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:5319591|PMID:22333836) MGI PMID:22333836 MGI:5319591 NCBI chr20:26,810,167...27,131,864
Ensembl chr20:26,809,958...27,220,057
JBrowse link
G PTPN18 protein tyrosine phosphatase non-receptor type 18 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr25:18,996,194...19,010,715 JBrowse link
G RPL7L1 ribosomal protein L7 like 1 acts_upstream_of_or_within ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) MGI PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr12:11,445,225...11,451,147 JBrowse link
G RRP7 ribosomal RNA processing 7 homolog involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) Ensembl
MGI
PMID:23211737 PMID:27869233 GO_REF:0000107 MGI:5605165 MGI:5913376 NCBI chr10:22,882,662...22,892,301
Ensembl chr10:22,882,717...22,890,806
JBrowse link
G RTN4 reticulon 4 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr10:55,884,452...55,954,476
Ensembl chr10:55,885,125...55,936,574
JBrowse link
G SF3B1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) MGI PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr37:6,922,150...6,962,474
Ensembl chr37:6,924,047...6,962,896
JBrowse link
G SF3B6 splicing factor 3b subunit 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:23211737 PMID:27869233 GO_REF:0000107 MGI:5605165 MGI:5913376 NCBI chr17:18,548,633...18,559,694
Ensembl chr17:18,548,622...18,704,161
JBrowse link
G SKIL SKI like proto-oncogene acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1858539|PMID:10811619) MGI
Ensembl
Ensembl
PMID:10811619 GO_REF:0000107 MGI:1858539 NCBI chr34:34,871,770...34,898,681
Ensembl chr34:34,871,574...34,894,854
JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 9:42,859,154...42,896,044
Ensembl chr 9:42,859,361...42,904,487
JBrowse link
G TEAD4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO (MGI:3811945|PMID:18804437) MGI PMID:18804437 MGI:3811945 NCBI chr27:41,744,100...41,783,223
Ensembl chr27:41,748,871...41,803,556
JBrowse link
G TJP1 tight junction protein 1 acts_upstream_of_or_within ISO (MGI:3797149|PMID:18423437) MGI PMID:18423437 MGI:3797149 NCBI chr 3:38,997,122...39,076,617
Ensembl chr 3:38,997,076...39,241,574
JBrowse link
G TM4SF1 transmembrane 4 L six family member 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr23:44,149,265...44,160,699
Ensembl chr23:44,151,971...44,155,172
JBrowse link
G TXNRD3 thioredoxin reductase 3 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr20:782,653...844,159
Ensembl chr20:782,653...831,351
JBrowse link
G USPL1 ubiquitin specific peptidase like 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr25:9,397,575...9,430,058
Ensembl chr25:9,397,763...9,427,431
JBrowse link
G WDR74 WD repeat domain 74 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5287298|PMID:21799883), (MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:21799883 PMID:27869233 GO_REF:0000107 MGI:5287298 MGI:5913376 NCBI chr18:53,855,207...53,861,700
Ensembl chr18:53,855,282...53,861,698
JBrowse link
G ZP3 zona pellucida glycoprotein 3 involved_in ISS
IEA
UniProt
UniProt
Ensembl
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:7,586,212...7,594,610
Ensembl chr 6:7,585,970...7,594,610
JBrowse link
blastocyst growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5528755|PMID:24036311) Ensembl
Ensembl
MGI
PMID:24036311 GO_REF:0000107 MGI:5528755 NCBI chr21:33,915,804...33,949,597
Ensembl chr21:33,915,772...33,949,103
JBrowse link
G INTS1 integrator complex subunit 1 acts_upstream_of_or_within ISO (MGI:3722560|PMID:17544522) MGI PMID:17544522 MGI:3722560 NCBI chr 6:15,453,491...15,483,240
Ensembl chr 6:15,447,391...15,483,239
JBrowse link
G LOC481709 POU domain, class 5, transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:860,702...866,099 JBrowse link
G NBN nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:35,416,093...35,477,569
Ensembl chr29:35,416,093...35,477,563
JBrowse link
G RAD51B RAD51 paralog B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1349263|PMID:10567591) MGI
Ensembl
PMID:10567591 GO_REF:0000107 MGI:1349263 NCBI chr 8:41,779,435...42,357,362
Ensembl chr 8:41,778,714...42,357,298
JBrowse link
G RLN2 relaxin 2 involved_in ISO (PMID:21272344) CACAO PMID:21272344 NCBI chr 1:93,500,682...93,505,098
Ensembl chr 1:93,500,682...93,505,098
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (MGI:5528755|PMID:24036311) MGI PMID:24036311 MGI:5528755 NCBI chr30:8,468,001...8,524,712
Ensembl chr30:8,467,761...8,522,874
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:1929360|PMID:11163203) MGI PMID:11163203 MGI:1929360 NCBI chr20:50,175,489...50,268,865
Ensembl chr20:50,175,687...50,268,836
JBrowse link
G ZNF830 zinc finger protein 830 acts_upstream_of_or_within ISO (MGI:3582017|PMID:15988037) MGI PMID:15988037 MGI:3582017 NCBI chr 9:38,382,508...38,384,060
Ensembl chr 9:38,382,900...38,384,015
JBrowse link
blastocyst hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP3 A-kinase anchoring protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5913376|PMID:27869233) MGI
Ensembl
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr27:40,217,313...40,255,934
Ensembl chr27:40,218,035...40,250,954
JBrowse link
G ARHGDIG Rho GDP dissociation inhibitor gamma acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr 6:40,222,014...40,225,037
Ensembl chr 6:40,221,103...40,223,115
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr20:48,398,615...48,406,889 JBrowse link
G BCOR BCL6 corepressor acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr  X:34,621,314...34,735,502
Ensembl chr  X:34,621,886...34,645,766
JBrowse link
G C12H6orf141 chromosome 12 C6orf141 homolog acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr12:17,390,391...17,392,003
Ensembl chr12:17,390,411...17,391,314
JBrowse link
G CCDC24 coiled-coil domain containing 24 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr15:16,267,994...16,269,499 JBrowse link
G CCDC62 coiled-coil domain containing 62 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr26:6,655,819...6,697,283
Ensembl chr26:6,655,700...6,697,115
JBrowse link
G CMTM3 CKLF like MARVEL transmembrane domain containing 3 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr 5:82,660,995...82,667,360
Ensembl chr 5:82,661,256...82,667,372
JBrowse link
G COPRS coordinator of PRMT5 and differentiation stimulator acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr 9:41,098,226...41,104,035
Ensembl chr 9:41,102,541...41,103,994
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr21:33,915,804...33,949,597
Ensembl chr21:33,915,772...33,949,103
JBrowse link
G FBLL1 fibrillarin like 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr 4:43,214,112...43,216,772 JBrowse link
G GRN granulin precursor acts_upstream_of_or_within ISO (MGI:3589098|PMID:15901638) MGI PMID:15901638 MGI:3589098 NCBI chr 9:19,077,430...19,085,443
Ensembl chr 9:19,077,427...19,082,268
JBrowse link
G HCFC1 host cell factor C1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr  X:121,790,585...121,815,395
Ensembl chr  X:121,791,660...121,814,715
JBrowse link
G HS3ST6 heparan sulfate-glucosamine 3-sulfotransferase 6 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr 6:38,997,299...39,002,611 JBrowse link
G LOC102157134 zinc finger protein 420-like acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr 1:115,588,509...115,614,040 JBrowse link
G LOC489590 solute carrier family 35 member E2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 5:56,715,798...56,739,464
Ensembl chr 5:56,718,550...56,738,420
JBrowse link
G LPAR6 lysophosphatidic acid receptor 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5913376|PMID:27869233) MGI
Ensembl
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr22:3,110,797...3,112,973
Ensembl chr22:3,111,462...3,112,499
JBrowse link
G NDUFA2 NADH:ubiquinone oxidoreductase subunit A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 2:35,803,452...35,805,530
Ensembl chr 2:35,803,453...35,805,531
JBrowse link
G NECAB1 N-terminal EF-hand calcium binding protein 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr29:36,154,555...36,332,111
Ensembl chr29:36,154,510...36,329,460
JBrowse link
G PEMT phosphatidylethanolamine N-methyltransferase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5913376|PMID:27869233) MGI
Ensembl
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 5:41,871,685...41,960,831
Ensembl chr 5:41,872,108...41,960,828
JBrowse link
G PHF6 PHD finger protein 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr  X:105,044,232...105,093,663
Ensembl chr  X:105,043,556...105,091,795
JBrowse link
G PLPP4 phospholipid phosphatase 4 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr28:30,502,287...30,585,324
Ensembl chr28:30,491,381...30,585,322
JBrowse link
G PPP4R4 protein phosphatase 4 regulatory subunit 4 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr 8:63,203,297...63,300,354
Ensembl chr 8:63,202,553...63,299,253
JBrowse link
G RBBP8 RB binding protein 8, endonuclease acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3575978|PMID:15831459) MGI
Ensembl
Ensembl
PMID:15831459 GO_REF:0000107 MGI:3575978 NCBI chr 7:65,218,288...65,319,696
Ensembl chr 7:65,218,297...65,297,099
JBrowse link
G SLC25A34 solute carrier family 25 member 34 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 2:81,859,294...81,864,808
Ensembl chr 2:81,860,234...81,863,494
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:1929360|PMID:11163203) MGI PMID:11163203 MGI:1929360 NCBI chr20:50,175,489...50,268,865
Ensembl chr20:50,175,687...50,268,836
JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1933896|PMID:11313485)
(MGI:1932782|PMID:11263494)
Ensembl
Ensembl
MGI
PMID:11263494 PMID:11313485 GO_REF:0000107 MGI:1932782 MGI:1933896 NCBI chr26:28,692,610...28,728,778
Ensembl chr26:28,692,899...28,728,783
JBrowse link
G SMIM14 small integral membrane protein 14 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913376|PMID:27869233) Ensembl
MGI
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 3:72,839,897...72,934,335
Ensembl chr 3:72,839,920...72,963,208
JBrowse link
G ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5913376|PMID:27869233) MGI
Ensembl
Ensembl
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 2:19,392,690...19,618,127
Ensembl chr 2:19,482,468...19,616,339
JBrowse link
G STMN3 stathmin 3 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr24:47,209,738...47,220,146
Ensembl chr24:47,209,784...47,219,472
JBrowse link
G SUDS3 SDS3 homolog, SIN3A corepressor complex component acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr26:14,716,759...14,749,475
Ensembl chr26:14,716,562...15,019,622
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr  X:41,894,623...41,907,854
Ensembl chr  X:41,893,045...41,906,403
JBrowse link
G TBL1XR1 TBL1X/Y related 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr34:40,573,631...40,690,975
Ensembl chr34:40,578,507...40,739,352
JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr  X:91,608,936...91,617,993
Ensembl chr  X:91,529,855...91,617,086
JBrowse link
G ZBED6 zinc finger BED-type containing 6 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr38:461,394...467,894 JBrowse link
G ZFP14 ZFP14 zinc finger protein involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 1:115,997,080...116,024,037 JBrowse link
G ZFP82 ZFP82 zinc finger protein acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) MGI PMID:27869233 MGI:5913376 NCBI chr 1:115,994,605...116,060,291 JBrowse link
BMP signaling pathway involved in mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ETV2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr 1:116,971,238...116,974,831
Ensembl chr 1:116,971,365...116,985,796
JBrowse link
branching involved in labyrinthine layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADM adrenomedullin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3689296|PMID:16981008) MGI
Ensembl
PMID:16981008 GO_REF:0000107 MGI:3689296 NCBI chr21:33,472,197...33,474,472
Ensembl chr21:33,471,623...33,474,495
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:1197797|PMID:9435295) MGI
UniProt
PMID:9435295 GO_REF:0000024 MGI:1197797 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G FZD5 frizzled class receptor 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5494335|PMID:23610556) MGI
Ensembl
PMID:23610556 GO_REF:0000107 MGI:5494335 NCBI chr37:16,123,788...16,126,634
Ensembl chr37:16,123,798...16,125,567
JBrowse link
G GCM1 glial cells missing transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1860502|PMID:10888880) MGI
Ensembl
Ensembl
PMID:10888880 GO_REF:0000107 MGI:1860502 NCBI chr12:20,623,593...20,642,861
Ensembl chr12:20,623,717...20,640,193
JBrowse link
G GRB2 growth factor receptor bound protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1934095|PMID:11369229) Ensembl
Ensembl
MGI
PMID:11369229 GO_REF:0000107 MGI:1934095 NCBI chr 9:5,108,128...5,182,091
Ensembl chr 9:5,117,164...5,180,296
JBrowse link
G IL10 interleukin 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3664708|PMID:12842419) MGI
Ensembl
Ensembl
PMID:12842419 GO_REF:0000107 MGI:3664708 NCBI chr 7:5,933,285...5,937,057
Ensembl chr 7:5,933,285...5,937,057
JBrowse link
G LLGL2 LLGL scribble cell polarity complex component 2 acts_upstream_of_or_within ISO (MGI:5052233|PMID:21606200) MGI PMID:21606200 MGI:5052233 NCBI chr 9:4,975,309...5,008,383
Ensembl chr 9:4,975,660...4,996,775
JBrowse link
G RSPO3 R-spondin 3 acts_upstream_of_or_within ISO (MGI:3695333|PMID:16963017) MGI PMID:16963017 MGI:3695333 NCBI chr 1:65,858,822...65,936,160
Ensembl chr 1:65,858,794...65,936,322
JBrowse link
G SOCS3 suppressor of cytokine signaling 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2137984|PMID:11481489) MGI
Ensembl
PMID:11481489 GO_REF:0000107 MGI:2137984 NCBI chr 9:2,859,267...2,859,944 JBrowse link
G SPINT1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3700412|PMID:17174946) MGI
Ensembl
PMID:17174946 GO_REF:0000107 MGI:3700412 NCBI chr30:7,976,094...7,989,019
Ensembl chr30:7,975,235...7,988,339
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:6260081|PMID:30236446) MGI PMID:30236446 MGI:6260081 NCBI chr26:6,039,046...6,047,490
Ensembl chr26:6,039,405...6,047,459
JBrowse link
cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EOMES eomesodermin involved_in ISO (MGI:1354065|PMID:10716450) UniProt PMID:10716450 MGI:1354065 NCBI chr23:16,476,498...16,512,406
Ensembl chr23:16,506,032...16,511,527
JBrowse link
G GCM1 glial cells missing transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
(MGI:1860502|PMID:10888880)
(PMID:21873635)
MGI
Ensembl
GO_Central
PMID:10888880 PMID:21873635 GO_REF:0000107 MGI:1860502 NCBI chr12:20,623,593...20,642,861
Ensembl chr12:20,623,717...20,640,193
JBrowse link
G KRT19 keratin 19 acts_upstream_of_or_within ISO (MGI:1926669|PMID:11062258) MGI PMID:11062258 MGI:1926669 NCBI chr 9:21,240,778...21,245,039 JBrowse link
G KRT8 keratin 8 acts_upstream_of_or_within ISO (MGI:1926669|PMID:11062258) MGI PMID:11062258 MGI:1926669 NCBI chr27:2,221,608...2,229,343 JBrowse link
G STK3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4412133|PMID:19786569) Ensembl
Ensembl
MGI
PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr13:647,363...920,887
Ensembl chr13:648,216...920,847
JBrowse link
G STK4 serine/threonine kinase 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4412133|PMID:19786569) MGI
Ensembl
PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr24:32,375,630...32,463,848
Ensembl chr24:32,375,189...32,521,042
JBrowse link
cell migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMOT angiomotin acts_upstream_of_or_within ISO (MGI:2655854|PMID:12676095) MGI PMID:12676095 MGI:2655854 NCBI chr  X:85,742,610...85,807,557
Ensembl chr  X:85,745,207...85,807,353
JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (MGI:3042338|PMID:15004567) MGI PMID:15004567 MGI:3042338 NCBI chr11:35,155,568...35,159,085
Ensembl chr11:35,156,430...35,158,942
JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (MGI:3045836|PMID:15142971) MGI PMID:15142971 MGI:3045836 NCBI chr18:49,439,494...49,555,375
Ensembl chr18:49,439,483...49,516,396
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3045836|PMID:15142971) MGI PMID:15142971 MGI:3045836 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in ISO (PMID:23063620) UniProt PMID:23063620 NCBI chr 1:112,020,344...112,063,120
Ensembl chr 1:112,021,960...112,024,773
JBrowse link
G MIXL1 Mix paired-like homeobox acts_upstream_of_or_within ISO (MGI:3695524|PMID:17151016) MGI PMID:17151016 MGI:3695524 NCBI chr 7:38,651,481...38,652,560 JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr36:25,965,243...26,054,775
Ensembl chr36:25,965,938...26,054,760
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3042338|PMID:15004567) MGI
Ensembl
PMID:15004567 GO_REF:0000107 MGI:3042338 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151
JBrowse link
G RIC8A RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO (MGI:4849883|PMID:21069829) MGI PMID:21069829 MGI:4849883 NCBI chr18:25,363,031...25,368,645
Ensembl chr18:25,362,875...25,368,378
JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (MGI:4946462|PMID:21146513) MGI PMID:21146513 MGI:4946462 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (MGI:1341493|PMID:10421635) MGI PMID:10421635 MGI:1341493 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468
JBrowse link
cell-cell adhesion involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RIC8A RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO (MGI:4849883|PMID:21069829) MGI PMID:21069829 MGI:4849883 NCBI chr18:25,363,031...25,368,645
Ensembl chr18:25,362,875...25,368,378
JBrowse link
chordate embryonic development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA1 BRCA1 DNA repair associated involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:707942|PMID:9171368)
GO_Central
GO_Central
Ensembl
Ensembl
MGI
PMID:9171368 PMID:21873635 GO_REF:0000107 MGI:707942 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494
JBrowse link
G BRCA2 BRCA2 DNA repair associated acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:707942|PMID:9171368) MGI
Ensembl
PMID:9171368 GO_REF:0000107 MGI:707942 NCBI chr25:7,734,450...7,797,851
Ensembl chr25:7,734,453...7,797,815
JBrowse link
G CENPU centromere protein U acts_upstream_of_or_within ISO (MGI:5517606|PMID:23724000) MGI PMID:23724000 MGI:5517606 NCBI chr16:45,821,111...45,857,636
Ensembl chr16:45,820,667...45,857,647
JBrowse link
G FAS Fas cell surface death receptor ISO RGD PMID:11331665 RGD:8686426 NCBI chr26:38,738,811...38,763,298
Ensembl chr26:38,737,611...38,763,321
JBrowse link
G LIMS1 LIM zinc finger domain containing 1 acts_upstream_of_or_within ISO (MGI:3575965|PMID:15798193) MGI PMID:15798193 MGI:3575965 NCBI chr10:35,192,582...35,339,100 JBrowse link
G TRIP6 thyroid hormone receptor interactor 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10826496) UniProt
Ensembl
Ensembl
PMID:10826496 GO_REF:0000107 NCBI chr 6:8,894,390...8,898,397
Ensembl chr 6:8,894,390...8,898,173
JBrowse link
G VEZT vezatin, adherens junctions transmembrane protein acts_upstream_of_or_within ISO (MGI:3610287|PMID:16199027) MGI PMID:16199027 MGI:3610287 NCBI chr15:35,162,734...35,232,689
Ensembl chr15:35,162,833...35,228,040
JBrowse link
chorio-allantoic fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP5 bone morphogenetic protein 5 involved_in ISO (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chr12:23,089,429...23,202,176
Ensembl chr12:23,089,459...23,202,348
JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in ISO (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653
JBrowse link
G CCN1 cellular communication network factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2446415|PMID:12446788) Ensembl
MGI
PMID:12446788 GO_REF:0000107 MGI:2446415 NCBI chr 6:62,443,285...62,446,246
Ensembl chr 6:62,443,675...62,445,994
JBrowse link
G DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO (MGI:1329806|PMID:10021343) MGI PMID:10021343 MGI:1329806 NCBI chr16:19,792,957...19,849,299
Ensembl chr16:19,768,639...19,848,139
JBrowse link
G ERF ETS2 repressor factor acts_upstream_of_or_within ISO (MGI:3718929|PMID:17502352) MGI PMID:17502352 MGI:3718929 NCBI chr 1:112,117,338...112,124,464
Ensembl chr 1:112,117,141...112,124,077
JBrowse link
G ITGA4 integrin subunit alpha 4 acts_upstream_of_or_within ISO (MGI:70927|PMID:7539359) MGI PMID:7539359 MGI:70927 NCBI chr36:24,670,464...24,686,719
Ensembl chr36:24,653,408...24,729,057
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1334099|PMID:10090727) MGI
Ensembl
PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr32:28,516,002...28,633,759
Ensembl chr32:28,517,108...28,634,019
JBrowse link
G VCAM1 vascular cell adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:70297|PMID:7530222)
(MGI:70924|PMID:7539357)
MGI PMID:7530222 PMID:7539357 MGI:70297 MGI:70924 NCBI chr 6:49,341,669...49,359,841
Ensembl chr 6:49,342,151...49,359,933
JBrowse link
G WNT7B Wnt family member 7B acts_upstream_of_or_within ISO (MGI:2150456|PMID:11543617) MGI PMID:11543617 MGI:2150456 NCBI chr10:20,160,916...20,208,786
Ensembl chr10:20,160,206...20,243,160
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3047495|PMID:15226444) Ensembl
Ensembl
MGI
PMID:15226444 GO_REF:0000107 MGI:3047495 NCBI chr 8:42,663,287...42,668,665
Ensembl chr 8:42,664,223...42,668,514
JBrowse link
chromatin reprogramming in the zygote term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL23 methyltransferase like 23 involved_in ISO (MGI:6103984|PMID:28930672) UniProt PMID:28930672 MGI:6103984 NCBI chr 9:4,031,941...4,037,012
Ensembl chr 9:4,031,955...4,037,127
JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHACTR4 phosphatase and actin regulator 4 involved_in IEA UniProt
UniProt
Ensembl
GO_REF:0000104 GO_REF:0000107 NCBI chr 2:71,982,524...72,079,916
Ensembl chr 2:71,984,730...72,080,194
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTHRC1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO (MGI:3814781|PMID:18606138) MGI PMID:18606138 MGI:3814781 NCBI chr13:4,801,049...4,811,565
Ensembl chr13:4,805,577...4,811,282
JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3589836|PMID:16116426) Ensembl
MGI
PMID:16116426 GO_REF:0000107 MGI:3589836 NCBI chr 5:56,507,803...56,519,382
Ensembl chr 5:56,507,739...56,519,491
JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3589836|PMID:16116426)
(MGI:3821448|PMID:19008950)
Ensembl
Ensembl
MGI
PMID:16116426 PMID:19008950 GO_REF:0000107 MGI:3589836 MGI:3821448 NCBI chr 5:32,194,326...32,201,922
Ensembl chr 5:32,194,313...32,201,857
JBrowse link
G DVL3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (MGI:3821448|PMID:19008950) MGI PMID:19008950 MGI:3821448 NCBI chr34:17,053,534...17,069,965
Ensembl chr34:17,053,343...17,068,389
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1335261|PMID:10072433) Ensembl
MGI
PMID:10072433 GO_REF:0000107 MGI:1335261 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G FRZB frizzled related protein acts_upstream_of_or_within ISO (MGI:3714704|PMID:17433286) MGI PMID:17433286 MGI:3714704 NCBI chr36:25,884,557...25,907,436
Ensembl chr36:25,884,557...25,907,369
JBrowse link
G FZD2 frizzled class receptor 2 acts_upstream_of_or_within ISO (MGI:4837757|PMID:20940229) MGI PMID:20940229 MGI:4837757 NCBI chr 9:18,888,711...18,890,549
Ensembl chr 9:18,888,696...18,890,525
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3709667|PMID:17395647) MGI PMID:17395647 MGI:3709667 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GRHL3 grainyhead like transcription factor 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4819429|PMID:20643356) MGI
Ensembl
Ensembl
PMID:20643356 GO_REF:0000107 MGI:4819429 NCBI chr 2:75,290,594...75,324,593
Ensembl chr 2:75,290,596...75,324,496
JBrowse link
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr14:40,267,033...40,272,212
Ensembl chr14:40,267,528...40,269,681
JBrowse link
G HPN hepsin involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:117,486,308...117,503,127
Ensembl chr 1:117,486,340...117,502,583
JBrowse link
G MYO3A myosin IIIA involved_in ISO (MGI:5766107|PMID:26754646) UniProt PMID:26754646 MGI:5766107 NCBI chr 2:7,455,125...7,695,483
Ensembl chr 2:7,455,625...7,696,043
JBrowse link
G MYO3B myosin IIIB involved_in ISO (MGI:5766107|PMID:26754646) UniProt PMID:26754646 MGI:5766107 NCBI chr36:14,804,662...15,229,597
Ensembl chr36:14,803,514...15,209,820
JBrowse link
G NEUROG1 neurogenin 1 involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr11:23,563,128...23,564,819
Ensembl chr11:23,563,803...23,564,543
JBrowse link
G PAX2 paired box 2 involved_in
acts_upstream_of_or_within
ISO (MGI:84247|PMID:8951055)
(MGI:3702803|PMID:16916509)
(MGI:4822275|PMID:20727173)
DFLAT
MGI
UniProt
PMID:8951055 PMID:16916509 PMID:20727173 MGI:3702803 MGI:4822275 MGI:84247 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094
JBrowse link
G POU3F4 POU class 3 homeobox 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:64,427,161...64,428,825
Ensembl chr  X:64,427,325...64,428,410
JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4830023|PMID:20704721) Ensembl
Ensembl
MGI
PMID:20704721 GO_REF:0000107 MGI:4830023 NCBI chr12:11,593,017...11,657,149
Ensembl chr12:11,593,043...11,656,320
JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (MGI:4430014|PMID:20016102) MGI PMID:20016102 MGI:4430014 NCBI chr 6:11,726,259...11,758,532
Ensembl chr 6:11,655,494...11,757,216
JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2671031|PMID:12874121) Ensembl
Ensembl
MGI
PMID:12874121 GO_REF:0000107 MGI:2671031 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:4454502|PMID:20346939) UniProt
UniProt
MGI
PMID:20346939 GO_REF:0000024 MGI:4454502 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:3765363|PMID:17825816) MGI
UniProt
PMID:17825816 GO_REF:0000024 MGI:3765363 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784
JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (MGI:3788971|PMID:18353863) MGI PMID:18353863 MGI:3788971 NCBI chr12:44,901,076...44,929,730
Ensembl chr12:44,873,119...44,929,205
JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736
JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,492,317...23,495,825
Ensembl chr11:23,492,867...23,493,352
JBrowse link
G TSHR thyroid stimulating hormone receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3652455|PMID:10575115) Ensembl
Ensembl
MGI
PMID:10575115 GO_REF:0000107 MGI:3652455 NCBI chr 8:53,327,280...53,482,898
Ensembl chr 8:53,326,655...53,482,898
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3714704|PMID:17433286)
(MGI:4819429|PMID:20643356)
(MGI:3589836|PMID:16116426), (MGI:3814781|PMID:18606138)
(MGI:3821448|PMID:19008950)
(MGI:4837757|PMID:20940229)
MGI PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... MGI:3589836 MGI:3714704 MGI:3814781 MGI:3821448 MGI:4819429 MGI:4837757 NCBI chr38:21,822,873...21,824,537 JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3714704|PMID:17433286) MGI
Ensembl
Ensembl
PMID:17433286 GO_REF:0000107 MGI:3714704 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (MGI:5294688|PMID:21980308) MGI PMID:21980308 MGI:5294688 NCBI chr 2:15,300,401...15,481,535
Ensembl chr 2:15,299,723...15,481,495
JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chr23:29,662,486...29,703,629
Ensembl chr23:29,645,641...29,703,805
JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DVL1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624185|PMID:16571627) Ensembl
MGI
PMID:16571627 GO_REF:0000107 MGI:3624185 NCBI chr 5:56,507,803...56,519,382
Ensembl chr 5:56,507,739...56,519,491
JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624185|PMID:16571627) Ensembl
MGI
Ensembl
PMID:16571627 GO_REF:0000107 MGI:3624185 NCBI chr 5:32,194,326...32,201,922
Ensembl chr 5:32,194,313...32,201,857
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3624185|PMID:16571627), (MGI:3703464|PMID:17229766) MGI PMID:16571627 PMID:17229766 MGI:3624185 MGI:3703464 NCBI chr38:21,822,873...21,824,537 JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964
JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CALM2 calmodulin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:49,299,698...49,314,533
Ensembl chr10:49,299,897...49,314,457
JBrowse link
G METTL23 methyltransferase like 23 acts_upstream_of_or_within ISO (MGI:6103984|PMID:28930672) UniProt PMID:28930672 MGI:6103984 NCBI chr 9:4,031,941...4,037,012
Ensembl chr 9:4,031,955...4,037,127
JBrowse link
G STPG4 sperm-tail PG-rich repeat containing 4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:6103984|PMID:28930672)
GO_Central
UniProt
PMID:21873635 PMID:28930672 MGI:6103984 NCBI chr10:49,255,715...49,294,752
Ensembl chr10:49,255,723...49,294,708
JBrowse link
G TET3 tet methylcytosine dioxygenase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:48,976,510...49,083,454
Ensembl chr17:48,981,558...49,082,675
JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 acts_upstream_of_or_within_positive_effect ISO (MGI:6270117|PMID:29117290)
(MGI:6151717|PMID:27841881)
(MGI:49689|PMID:1606615)
MGI PMID:1606615 PMID:27841881 PMID:29117290 MGI:49689 MGI:6151717 MGI:6270117 NCBI chr20:50,872,213...50,928,352
Ensembl chr20:50,879,527...50,928,029
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO (MGI:1347183|PMID:10555141)
(MGI:6151717|PMID:27841881)
(MGI:3045942|PMID:15215868)
(MGI:5014027|PMID:20385583)
MGI
UniProt
PMID:10555141 PMID:15215868 PMID:20385583 PMID:27841881 MGI:1347183 MGI:3045942 MGI:5014027 MGI:6151717 NCBI chr17:19,489,524...19,563,074
Ensembl chr17:19,492,193...19,563,902
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:1347183|PMID:10555141)
(MGI:6151717|PMID:27841881)
(PMID:18814855)
MGI
UniProt
PMID:10555141 PMID:18814855 PMID:27841881 MGI:1347183 MGI:6151717 NCBI chr24:22,096,386...22,123,378
Ensembl chr24:22,096,349...22,122,900
JBrowse link
G TRIM28 tripartite motif containing 28 acts_upstream_of_or_within ISO (MGI:5319411|PMID:22495301) MGI PMID:22495301 MGI:5319411 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
G ZDBF2 zinc finger DBF-type containing 2 acts_upstream_of_or_within ISO (MGI:6151717|PMID:27841881) MGI PMID:27841881 MGI:6151717 NCBI chr37:14,867,344...14,897,552
Ensembl chr37:14,871,575...14,894,047
JBrowse link
G ZFP57 ZFP57 zinc finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:18622393)
(MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
UniProt
MGI
PMID:18622393 PMID:18854139 PMID:33500348 MGI:3826319 MGI:6506156 NCBI chr35:26,267,358...26,269,429 JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3046395|PMID:15218525) Ensembl
Ensembl
MGI
PMID:15218525 GO_REF:0000107 MGI:3046395 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G ELL elongation factor for RNA polymerase II involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:44,512,665...44,592,156
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G FKBP8 FKBP prolyl isomerase 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3806189|PMID:18590716)
(MGI:3774974|PMID:18003640)
MGI
Ensembl
Ensembl
PMID:18003640 PMID:18590716 GO_REF:0000107 MGI:3774974 MGI:3806189 NCBI chr20:44,494,856...44,504,084
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G FOXA1 forkhead box A1 acts_upstream_of_or_within ISO (MGI:5486225|PMID:23383217) MGI PMID:23383217 MGI:5486225 NCBI chr 8:16,072,629...16,083,105
Ensembl chr 8:16,079,140...16,083,807
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716)
(MGI:894511|PMID:9226455)
(MGI:5486225|PMID:23383217)
MGI PMID:9226455 PMID:18590716 PMID:23383217 MGI:3806189 MGI:5486225 MGI:894511 NCBI chr24:1,010,370...1,013,791
Ensembl chr24:1,010,651...1,013,072
JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3710451|PMID:17504941)
(MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940)
MGI PMID:17504940 PMID:17504941 MGI:3710451 MGI:3710452 NCBI chr 1:72,927,346...72,930,119
Ensembl chr 1:72,927,670...72,928,827
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674)
(MGI:894564|PMID:9247260)
MGI PMID:9247260 PMID:18590716 PMID:19286674 MGI:3806189 MGI:3841503 MGI:894564 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GSC goosecoid homeobox acts_upstream_of_or_within ISO (MGI:894511|PMID:9226455) MGI PMID:9226455 MGI:894511 NCBI chr 8:63,684,149...63,707,030
Ensembl chr 8:63,684,137...63,707,054
JBrowse link
G ISYNA1 inositol-3-phosphate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:44,594,816...44,598,495
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within
involved_in
ISO (MGI:3806189|PMID:18590716)
(MGI:4888042|PMID:21209331)
(MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674)
MGI
BHF-UCL
PMID:18590716 PMID:19286674 PMID:21209331 MGI:3806189 MGI:3841503 MGI:4888042 NCBI chr11:20,988,516...21,044,151
Ensembl chr11:20,928,655...21,044,090
JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr16:19,509,038...19,514,378
Ensembl chr16:19,499,582...19,512,836
JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (MGI:3806189|PMID:18590716) MGI PMID:18590716 MGI:3806189 NCBI chr 2:79,813,835...79,952,490
Ensembl chr 2:79,815,748...79,915,003
JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1347695|PMID:10557208) Ensembl
Ensembl
MGI
PMID:10557208 GO_REF:0000107 MGI:1347695 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532
JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208) MGI PMID:10557208 MGI:1347695 NCBI chr 7:38,147,157...38,163,023
Ensembl chr 7:38,147,173...38,166,722
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within ISO (MGI:1095757|PMID:9262482) MGI PMID:9262482 MGI:1095757 NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662
JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in ISO (MGI:69552|PMID:7720556) UniProt PMID:7720556 MGI:69552 NCBI chr12:24,388,530...24,438,956
Ensembl chr12:24,387,643...24,421,869
JBrowse link
G RNF220 ring finger protein 220 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6220747|PMID:30177510) MGI
Ensembl
PMID:30177510 GO_REF:0000107 MGI:6220747 NCBI chr15:15,664,025...15,898,564
Ensembl chr15:15,664,876...15,891,748
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3710451|PMID:17504941)
(MGI:3710017|PMID:17442700), (MGI:3806189|PMID:18590716)
Ensembl
MGI
PMID:17442700 PMID:17504941 PMID:18590716 GO_REF:0000107 MGI:3710017 MGI:3710451 MGI:3806189 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3806189|PMID:18590716) MGI
Ensembl
PMID:18590716 GO_REF:0000107 MGI:3806189 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033
JBrowse link
G TCTN1 tectonic family member 1 acts_upstream_of_or_within ISO (MGI:3610767|PMID:16357211) MGI PMID:16357211 MGI:3610767 NCBI chr26:8,411,429...8,444,640
Ensembl chr26:8,407,105...8,437,027
JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within ISO (MGI:3841503|PMID:19286674) MGI PMID:19286674 MGI:3841503 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097
JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (MGI:64780|PMID:8299937) MGI PMID:8299937 MGI:64780 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412
JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1861752|PMID:10932191) MGI
Ensembl
PMID:10932191 GO_REF:0000107 MGI:1861752 NCBI chr29:11,115,865...11,284,713
Ensembl chr29:11,156,340...11,283,627
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G GJB6 gap junction protein beta 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2447513|PMID:12490528) MGI
Ensembl
PMID:12490528 GO_REF:0000107 MGI:2447513 NCBI chr25:17,912,036...17,922,310
Ensembl chr25:17,911,262...17,921,605
JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:3050165|PMID:15190012) MGI
UniProt
PMID:15190012 GO_REF:0000024 MGI:3050165 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784
JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5314316|PMID:22228095) MGI
Ensembl
PMID:22228095 GO_REF:0000107 MGI:5314316 NCBI chr 3:73,115,560...73,213,823
Ensembl chr 3:73,137,250...73,221,512
JBrowse link
ectoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr24:1,010,370...1,013,791
Ensembl chr24:1,010,651...1,013,072
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:1344734|PMID:10498685) UniProt
Ensembl
MGI
PMID:10498685 GO_REF:0000024 GO_REF:0000107 MGI:1344734 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164
JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELF5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO (MGI:5616945|PMID:25446535) MGI PMID:25446535 MGI:5616945 NCBI chr18:33,342,962...33,376,012
Ensembl chr18:33,332,324...33,374,828
JBrowse link
G ETS2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5616945|PMID:25446535) MGI
Ensembl
Ensembl
PMID:25446535 GO_REF:0000107 MGI:5616945 NCBI chr31:33,846,821...33,861,394
Ensembl chr31:33,839,010...33,860,330
JBrowse link
G LOC481709 POU domain, class 5, transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:860,702...866,099 JBrowse link
embryo development ending in birth or egg hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACE angiotensin I converting enzyme ISO RGD PMID:1784836 RGD:12879818 NCBI chr 9:11,497,182...11,516,362
Ensembl chr 9:11,497,182...11,516,358
JBrowse link
G AKIRIN2 akirin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:47,113,856...47,132,800
Ensembl chr12:47,113,857...47,132,555
JBrowse link
G CAMSAP3 calmodulin regulated spectrin associated protein family member 3 involved_in ISO (MGI:6094483|PMID:28860385) UniProt PMID:28860385 MGI:6094483 NCBI chr20:52,378,532...52,391,452
Ensembl chr20:52,381,567...52,391,203
JBrowse link
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 involved_in ISO PMID:11276227 UniProt PMID:11276227 RGD:8554712 NCBI chr 9:40,481,111...40,502,689
Ensembl chr 9:40,501,646...40,502,569
JBrowse link
G EVX1 even-skipped homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:68131|PMID:7958869) MGI
Ensembl
Ensembl
PMID:7958869 GO_REF:0000107 MGI:68131 NCBI chr14:40,416,167...40,422,412
Ensembl chr14:40,418,589...40,423,482
JBrowse link
G FGF2 fibroblast growth factor 2 ISO RGD PMID:19476451 RGD:2315829 NCBI chr19:17,403,288...17,463,143
Ensembl chr19:16,994,661...17,463,151
JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (MGI:2684487|PMID:14623825) MGI PMID:14623825 MGI:2684487 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468
JBrowse link
G FXN frataxin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1858550|PMID:10767347) Ensembl
Ensembl
MGI
PMID:10767347 GO_REF:0000107 MGI:1858550 NCBI chr 1:88,288,566...88,311,228
Ensembl chr 1:88,288,566...88,311,228
JBrowse link
G HUS1 HUS1 checkpoint clamp component involved_in ISO (MGI:3582004|PMID:15919177) UniProt PMID:15919177 MGI:3582004 NCBI chr16:93,596...104,908
Ensembl chr16:93,626...125,597
JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(PMID:11520675) UniProt
Ensembl
UniProt
PMID:11520675 GO_REF:0000024 GO_REF:0000107 NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225
JBrowse link
G RARS2 arginyl-tRNA synthetase 2, mitochondrial involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:46,993,787...47,047,295
Ensembl chr12:46,992,959...47,047,240
JBrowse link
G RICTOR RPTOR independent companion of MTOR complex 2 involved_in ISO (MGI:3702793|PMID:16962829) UniProt PMID:16962829 MGI:3702793 NCBI chr 4:69,903,393...70,013,168
Ensembl chr 4:69,936,379...70,010,566
JBrowse link
G SCEL sciellin involved_in ISO (MGI:1928154|PMID:11112355) UniProt PMID:11112355 MGI:1928154 NCBI chr22:30,874,267...31,171,598
Ensembl chr22:31,045,878...31,171,033
JBrowse link
G SEBOX SEBOX homeobox acts_upstream_of_or_within ISO (MGI:3836092|PMID:18753614) MGI PMID:18753614 MGI:3836092 NCBI chr 9:42,614,770...42,616,412
Ensembl chr 9:42,614,941...42,630,864
JBrowse link
G STOX2 storkhead box 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:46,422,717...46,679,516
Ensembl chr16:46,428,213...46,637,959
JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624572|PMID:16702401) MGI
Ensembl
PMID:16702401 GO_REF:0000107 MGI:3624572 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
G TP53BP2 tumor protein p53 binding protein 2 acts_upstream_of_or_within ISO (MGI:3624572|PMID:16702401) MGI PMID:16702401 MGI:3624572 NCBI chr 7:40,296,278...40,329,818
Ensembl chr 7:40,252,697...40,329,828
JBrowse link
G UBR3 ubiquitin protein ligase E3 component n-recognin 3 involved_in ISO (MGI:3718176|PMID:17462990) UniProt PMID:17462990 MGI:3718176 NCBI chr36:14,537,900...14,723,942
Ensembl chr36:14,537,921...14,721,790
JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (MGI:1928546|PMID:11118896) MGI PMID:11118896 MGI:1928546 NCBI chr34:17,255,770...17,264,776
Ensembl chr34:17,255,562...17,271,713
JBrowse link
G CHRDL1 chordin like 1 involved_in ISO (MGI:1928546|PMID:11118896), (MGI:1934402|PMID:11401399) MGI PMID:11118896 PMID:11401399 MGI:1928546 MGI:1934402 NCBI chr  X:83,816,131...83,936,497
Ensembl chr  X:83,817,880...83,936,949
JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:56,327,104...56,332,608
Ensembl chr  X:56,327,182...56,332,047
JBrowse link
G COBL cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr18:2,206,957...2,386,333
Ensembl chr18:2,208,260...2,459,206
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:894149|PMID:9230313) MGI PMID:9230313 MGI:894149 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G FRAT1 frequently rearranged in advanced T-cell lymphomas acts_upstream_of_or_within ISO (MGI:1349209|PMID:10534617) MGI PMID:10534617 MGI:1349209 NCBI chr28:10,635,959...10,637,321
Ensembl chr28:10,635,944...10,636,787
JBrowse link
G FZD5 frizzled class receptor 5 involved_in ISO (PMID:12121999) BHF-UCL PMID:12121999 NCBI chr37:16,123,788...16,126,634
Ensembl chr37:16,123,798...16,125,567
JBrowse link
G STIL STIL centriolar assembly protein acts_upstream_of_or_within ISO (MGI:1339521|PMID:10385121) MGI PMID:10385121 MGI:1339521 NCBI chr15:13,369,292...13,431,677
Ensembl chr15:13,371,925...13,430,951
JBrowse link
G WNT1 Wnt family member 1 involved_in ISO (MGI:4822553|PMID:2534596) BHF-UCL PMID:2534596 MGI:4822553 NCBI chr27:5,588,151...5,592,254
Ensembl chr27:5,574,940...5,592,060
JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
JBrowse link
embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDON cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (MGI:3624617|PMID:16647303)
(MGI:3624618|PMID:16647304)
MGI PMID:16647303 PMID:16647304 MGI:3624617 MGI:3624618 NCBI chr 5:8,439,606...8,536,088
Ensembl chr 5:8,446,346...8,533,426
JBrowse link
G FUZ fuzzy planar cell polarity protein involved_in ISO (MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618) UniProt PMID:19767740 PMID:21935430 PMID:23806618 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chr 1:106,742,381...106,752,543
Ensembl chr 1:106,747,860...106,805,699
JBrowse link
G GATAD2A GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chr20:43,736,471...43,853,505
Ensembl chr20:43,739,849...43,846,370
JBrowse link
G GREM2 gremlin 2, DAN family BMP antagonist involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:32,048,151...32,157,698
Ensembl chr 7:32,048,183...32,157,146
JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
JBrowse link
G MAB21L2 mab-21 like 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3510098|PMID:15385160) Ensembl
Ensembl
MGI
PMID:15385160 GO_REF:0000107 MGI:3510098 NCBI chr15:48,538,912...48,541,651
Ensembl chr15:48,539,955...48,541,034
JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr36:25,965,243...26,054,775
Ensembl chr36:25,965,938...26,054,760
JBrowse link
G OFD1 OFD1 centriole and centriolar satellite protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr  X:10,140,439...10,194,478
Ensembl chr  X:10,140,067...10,194,472
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:3037149|PMID:15013802) MGI PMID:15013802 MGI:3037149 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
G ZNF281 zinc finger protein 281 involved_in ISO (MGI:5448369|PMID:21915945) UniProt PMID:21915945 MGI:5448369 NCBI chr 7:2,716,575...2,721,524
Ensembl chr 7:2,716,974...2,719,613
JBrowse link
embryonic brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO RGD PMID:19819228 RGD:11537397 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351
JBrowse link
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:13,040,016...13,044,364
Ensembl chr28:13,040,573...13,044,323
JBrowse link
G CC2D2A coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO (MGI:5696765|PMID:24947469) MGI PMID:24947469 MGI:5696765 NCBI chr 3:64,731,165...64,867,743
Ensembl chr 3:64,731,171...64,867,547
JBrowse link
G CDC40 cell division cycle 40 involved_in ISO (PMID:33220177) UniProt PMID:33220177 NCBI chr12:66,897,953...66,950,131
Ensembl chr12:66,897,412...66,949,366
JBrowse link
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr 1:97,623,126...97,662,668
Ensembl chr 1:97,622,998...97,662,662
JBrowse link
G CNTNAP2 contactin associated protein 2 involved_in ISO (MGI:6467171|PMID:32879327) MGI PMID:32879327 MGI:6467171 NCBI chr16:2,239,953...4,208,718
Ensembl chr16:2,243,918...4,208,416
JBrowse link
G CTNNB1 catenin beta 1 involved_in ISO (MGI:1931800|PMID:11262227) ParkinsonsUK-UCL PMID:11262227 MGI:1931800 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G DIP2A disco interacting protein 2 homolog A acts_upstream_of_or_within ISO (MGI:5696764|PMID:25220058) MGI PMID:25220058 MGI:5696764 NCBI chr31:39,695,620...39,778,527
Ensembl chr31:39,686,465...39,777,484
JBrowse link
G EN1 engrailed homeobox 1 involved_in ISO (MGI:75252|PMID:7624797) ParkinsonsUK-UCL PMID:7624797 MGI:75252 NCBI chr19:31,124,325...31,129,538 JBrowse link
G EN2 engrailed homeobox 2 involved_in ISO (MGI:75252|PMID:7624797) ParkinsonsUK-UCL PMID:7624797 MGI:75252 NCBI chr16:18,358,100...18,365,827 JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within ISO (MGI:5505384|PMID:23469164) MGI PMID:23469164 MGI:5505384 NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758
JBrowse link
G LOC478702 tubulin beta-2B chain acts_upstream_of_or_within ISO (MGI:5050793|PMID:21515572) MGI PMID:21515572 MGI:5050793 NCBI chr35:3,494,982...3,498,274
Ensembl chr35:3,495,277...3,498,248
JBrowse link
G MED12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:4839544 NCBI chr  X:55,487,629...55,508,941
Ensembl chr  X:55,482,013...55,509,992
JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A NOT|involved_in ISO (MGI:6196220|PMID:30074985) ARUK-UCL PMID:30074985 MGI:6196220 NCBI chr15:2,966,433...2,979,030
Ensembl chr15:2,966,461...2,978,968
JBrowse link
G MIR34B microRNA mir-34b acts_upstream_of_or_within ISO (MGI:5578416|PMID:24982181) MGI PMID:24982181 MGI:5578416 NCBI chr 5:21,558,685...21,558,768
Ensembl chr 5:21,558,685...21,558,768
JBrowse link
G MIR34C microRNA mir-34c acts_upstream_of_or_within ISO (MGI:5578416|PMID:24982181) MGI PMID:24982181 MGI:5578416 NCBI chr 5:21,558,106...21,558,160 JBrowse link
G MIR449A microRNA mir-449a acts_upstream_of_or_within ISO (MGI:5578416|PMID:24982181) MGI PMID:24982181 MGI:5578416 NCBI chr 2:42,541,949...42,542,039
Ensembl chr 2:42,541,949...42,542,039
JBrowse link
G MIR449B microRNA mir-449b acts_upstream_of_or_within ISO (MGI:5578416|PMID:24982181) MGI PMID:24982181 MGI:5578416 NCBI chr 2:42,542,049...42,542,177
Ensembl chr 2:42,542,049...42,542,177
JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5487695|PMID:23454480) Ensembl
Ensembl
MGI
PMID:23454480 GO_REF:0000107 MGI:5487695 NCBI chr 9:32,865,972...32,878,712
Ensembl chr 9:32,860,995...32,879,338
JBrowse link
G PHF10 PHD finger protein 10 ISO RGD PMID:24056535 RGD:9588230 NCBI chr12:71,955,354...71,998,283
Ensembl chr12:71,787,082...71,998,243
JBrowse link
G PPIL1 peptidylprolyl isomerase like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:5,916,524...5,936,276
Ensembl chr12:5,917,228...5,942,943
JBrowse link
G RNF112 ring finger protein 112 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:40,792,049...40,798,534
Ensembl chr 5:40,793,107...40,806,073
JBrowse link
G RPL10 ribosomal protein L10 involved_in ISO (PMID:25316788) UniProt PMID:25316788 NCBI chr  X:122,098,020...122,100,719
Ensembl chr  X:122,098,020...122,100,719
JBrowse link
G SLC6A8 solute carrier family 6 member 8 ISO RGD PMID:15918910 RGD:1599815 NCBI chr  X:121,505,117...121,511,674
Ensembl chr  X:121,505,141...121,510,347
JBrowse link
G TBC1D23 TBC1 domain family member 23 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr33:6,883,199...6,939,788
Ensembl chr33:6,883,336...6,938,318
JBrowse link
G TRA2B transformer 2 beta homolog acts_upstream_of_or_within ISO (MGI:5304203|PMID:22194695) MGI PMID:22194695 MGI:5304203 NCBI chr34:18,637,725...18,656,869
Ensembl chr34:18,638,325...18,657,862
JBrowse link
G TTBK2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (MGI:5049817|PMID:21548880) MGI PMID:21548880 MGI:5049817 NCBI chr30:9,674,911...9,844,860
Ensembl chr30:9,676,828...9,844,838
JBrowse link
G WNT1 Wnt family member 1 involved_in ISO (MGI:3045659|PMID:15121182) ParkinsonsUK-UCL PMID:15121182 MGI:3045659 NCBI chr27:5,588,151...5,592,254
Ensembl chr27:5,574,940...5,592,060
JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3700411|PMID:17184764) MGI
Ensembl
Ensembl
PMID:17184764 GO_REF:0000107 MGI:3700411 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within
involved_in
ISO (MGI:3700411|PMID:17184764)
(MGI:3042765|PMID:14623956)
MGI
UniProt
PMID:14623956 PMID:17184764 MGI:3042765 MGI:3700411 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664
JBrowse link
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr 1:97,623,126...97,662,668
Ensembl chr 1:97,622,998...97,662,662
JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3588480|PMID:15958512) Ensembl
Ensembl
MGI
PMID:15958512 GO_REF:0000107 MGI:3588480 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FZD5 frizzled class receptor 5 acts_upstream_of_or_within ISO (MGI:3821812|PMID:18791178) MGI PMID:18791178 MGI:3821812 NCBI chr37:16,123,788...16,126,634
Ensembl chr37:16,123,798...16,125,567
JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within ISO (MGI:5505384|PMID:23469164) MGI PMID:23469164 MGI:5505384 NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758
JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:1347482|PMID:10572050)
(MGI:1344731|PMID:10498698)
MGI PMID:10498698 PMID:10572050 MGI:1344731 MGI:1347482 NCBI chr32:30,710,161...30,730,162
Ensembl chr32:30,710,685...30,730,273
JBrowse link
G PPP1R13L protein phosphatase 1 regulatory subunit 13 like acts_upstream_of_or_within ISO (MGI:3530389|PMID:15661756) MGI PMID:15661756 MGI:3530389 NCBI chr 1:110,149,393...110,166,029
Ensembl chr 1:110,156,749...110,165,915
JBrowse link
G RARA retinoic acid receptor alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:69060|PMID:7607067) MGI
Ensembl
Ensembl
PMID:7607067 GO_REF:0000107 MGI:69060 NCBI chr 9:22,254,803...22,298,614
Ensembl chr 9:22,254,806...22,289,459
JBrowse link
G RARG retinoic acid receptor gamma acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:69060|PMID:7607067) MGI
Ensembl
PMID:7607067 GO_REF:0000107 MGI:69060 NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476
JBrowse link
G RDH10 retinol dehydrogenase 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709664|PMID:17473173) MGI
Ensembl
Ensembl
PMID:17473173 GO_REF:0000107 MGI:3709664 NCBI chr29:21,886,014...21,912,451
Ensembl chr29:21,885,012...21,911,303
JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chr25:48,782,448...48,836,993
Ensembl chr25:48,782,463...48,834,374
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3841503|PMID:19286674) Ensembl
MGI
PMID:19286674 GO_REF:0000107 MGI:3841503 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097
JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5314316|PMID:22228095) MGI
Ensembl
PMID:22228095 GO_REF:0000107 MGI:5314316 NCBI chr 3:73,115,560...73,213,823
Ensembl chr 3:73,137,250...73,221,512
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr30:37,331,834...37,359,449
Ensembl chr30:37,331,832...37,353,529
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (MGI:1332362|PMID:10049573) MGI PMID:10049573 MGI:1332362 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653
JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chr 1:31,522,911...31,525,342
Ensembl chr 1:31,523,799...31,524,995
JBrowse link
G CRYAA crystallin alpha A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3775669|PMID:18056999) Ensembl
Ensembl
MGI
PMID:18056999 GO_REF:0000107 MGI:3775669 NCBI chr31:37,307,070...37,310,262
Ensembl chr31:37,307,093...37,310,247
JBrowse link
G FOXF2 forkhead box F2 involved_in ISO (MGI:5297296|PMID:22022403) BHF-UCL PMID:22022403 MGI:5297296 NCBI chr35:1,841,165...1,846,649
Ensembl chr35:1,841,123...1,846,663
JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:16,123,788...16,126,634
Ensembl chr37:16,123,798...16,125,567
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:51,732,079...51,783,534
Ensembl chr17:51,732,016...51,781,063
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr16:9,066,957...9,256,916
Ensembl chr16:9,066,970...9,244,526
JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6094959|PMID:28778798) Ensembl
Ensembl
MGI
PMID:28778798 GO_REF:0000107 MGI:6094959 NCBI chr17:21,389,462...21,426,970
Ensembl chr17:21,389,482...21,426,796
JBrowse link
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr37:25,616,942...25,622,989 JBrowse link
G KDM2B lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chr26:7,625,857...7,746,049
Ensembl chr26:7,598,931...7,745,113
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3823171|PMID:18985738)
(MGI:4413396|PMID:19653321)
MGI PMID:18985738 PMID:19653321 MGI:3823171 MGI:4413396 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101
G SP1 Sp1 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr27:1,802,587...1,861,187
Ensembl chr27:1,805,184...1,847,226
JBrowse link
G SP3 Sp3 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr36:18,023,750...18,086,995
Ensembl chr36:18,024,627...18,077,587
JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
G TH tyrosine hydroxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:46,327,136...46,334,973
Ensembl chr18:46,327,137...46,335,602
JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (MGI:3790562|PMID:18436818) MGI PMID:18436818 MGI:3790562 NCBI chr 2:15,300,401...15,481,535
Ensembl chr 2:15,299,723...15,481,495
JBrowse link
embryonic cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AATF apoptosis antagonizing transcription factor acts_upstream_of
involved_in
ISO
IEA
(MGI:1927250|PMID:11071758) MGI
Ensembl
Ensembl
PMID:11071758 GO_REF:0000107 MGI:1927250 NCBI chr 9:36,773,313...36,878,752
Ensembl chr 9:36,773,312...36,878,745
JBrowse link
G CUL3 cullin 3 involved_in ISO (MGI:5312166|PMID:22358839) UniProt PMID:22358839 MGI:5312166 NCBI chr25:37,730,903...37,819,851
Ensembl chr25:37,733,229...37,800,886
JBrowse link
G DPPA3 developmental pluripotency associated 3 acts_upstream_of_or_within ISO (MGI:3056827|PMID:15018652) MGI PMID:15018652 MGI:3056827 NCBI chr27:37,114,192...37,196,434 JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (MGI:1101629|PMID:9426063) MGI PMID:9426063 MGI:1101629 NCBI chr 1:110,173,781...110,191,612
Ensembl chr 1:110,173,715...110,190,125
JBrowse link
G GDF9 growth differentiation factor 9 involved_in ISO (PMID:24313324) AgBase PMID:24313324 NCBI chr11:21,143,982...21,148,945
Ensembl chr11:21,143,975...21,149,825
JBrowse link
G KIF20A kinesin family member 20A involved_in ISO (PMID:25036038) AgBase PMID:25036038 NCBI chr11:25,826,140...25,834,220
Ensembl chr11:25,825,747...25,833,985
JBrowse link
G PADI6 peptidyl arginine deiminase 6 involved_in ISO (MGI:6508663|PMID:16137333) UniProt PMID:16137333 MGI:6508663 NCBI chr 2:80,888,961...80,907,780
Ensembl chr 2:80,888,961...80,907,780
JBrowse link
G PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta acts_upstream_of_or_within ISO (MGI:2177130|PMID:11919689) MGI PMID:11919689 MGI:2177130 NCBI chr23:34,832,661...34,955,410
Ensembl chr23:34,836,540...34,993,939
JBrowse link
G RHOA ras homolog family member A involved_in ISO (PMID:25485583) AgBase PMID:25485583 NCBI chr20:39,824,552...39,888,089
Ensembl chr20:39,824,575...39,887,215
JBrowse link
G TOP1 DNA topoisomerase I involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:83974|PMID:8943335) Ensembl
MGI
PMID:8943335 GO_REF:0000107 MGI:83974 NCBI chr24:29,075,267...29,166,733
Ensembl chr24:29,075,492...29,165,864
JBrowse link
G TOP2A DNA topoisomerase II alpha acts_upstream_of_or_within ISO (MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:2158879 NCBI chr 9:22,207,501...22,237,497
Ensembl chr 9:22,207,638...22,237,496
JBrowse link
G TPRA1 transmembrane protein adipocyte associated 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5525240|PMID:18459117) MGI
Ensembl
PMID:18459117 GO_REF:0000107 MGI:5525240 NCBI chr20:1,661,980...1,680,111
Ensembl chr20:1,653,855...1,671,666
JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX3 ALX homeobox 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:41,899,288...41,907,832
Ensembl chr 6:41,903,474...41,906,963
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1095762|PMID:9268572) Ensembl
Ensembl
MGI
PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G DLX2 distal-less homeobox 2 acts_upstream_of_or_within ISO (MGI:76977|PMID:7590232) MGI PMID:7590232 MGI:76977 NCBI chr36:16,499,009...16,502,365
Ensembl chr36:16,484,302...16,502,510
JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:1,582,950...1,593,893
Ensembl chr 9:1,582,993...1,593,892
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in ISO (PMID:7874170), (PMID:7987400) BHF-UCL PMID:7874170 PMID:7987400 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:86990|PMID:9106663) MGI
Ensembl
PMID:9106663 GO_REF:0000107 MGI:86990 NCBI chr 5:66,234,336...66,296,007
Ensembl chr 5:66,294,176...66,295,693
JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3713422|PMID:17525797) MGI PMID:17525797 MGI:3713422 NCBI chr 1:72,927,346...72,930,119
Ensembl chr 1:72,927,670...72,928,827
JBrowse link
G GNAS GNAS complex locus acts_upstream_of_or_within ISO (MGI:3619837|PMID:15797856) MGI PMID:15797856 MGI:3619837 NCBI chr24:43,643,409...43,658,641
Ensembl chr24:43,643,405...43,658,657
JBrowse link
G GRHL2 grainyhead like transcription factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4943100|PMID:21377456) MGI
Ensembl
PMID:21377456 GO_REF:0000107 MGI:4943100 NCBI chr13:3,204,898...3,362,533
Ensembl chr13:3,204,925...3,362,096
JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within ISO (MGI:5505384|PMID:23469164) MGI PMID:23469164 MGI:5505384 NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758
JBrowse link
G IRX5 iroquois homeobox 5 involved_in ISO (PMID:22581230) UniProt PMID:22581230 NCBI chr 2:60,957,353...60,978,782
Ensembl chr 2:60,968,193...61,041,385
JBrowse link
G MMP14 matrix metallopeptidase 14 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3771253|PMID:18022611) Ensembl
Ensembl
MGI
PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr 8:3,183,419...3,193,079
Ensembl chr 8:3,183,606...3,194,122
JBrowse link
G MMP16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3771253|PMID:18022611) Ensembl
Ensembl
MGI
PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr29:33,896,133...34,207,560
Ensembl chr29:33,917,907...34,207,466
JBrowse link
G NIPBL NIPBL cohesin loading factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4367301|PMID:19763162) MGI
Ensembl
PMID:19763162 GO_REF:0000107 MGI:4367301 NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2155575|PMID:11311163) MGI
Ensembl
PMID:11311163 GO_REF:0000107 MGI:2155575 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151
JBrowse link
G PAX5 paired box 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5476374|PMID:23349049) MGI
Ensembl
Ensembl
PMID:23349049 GO_REF:0000107 MGI:5476374 NCBI chr11:53,194,905...53,390,204
Ensembl chr11:53,201,344...53,390,974
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:46,729,722...46,775,828
Ensembl chr13:46,730,703...46,773,278
JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1306737|PMID:9729491)
(MGI:73363|PMID:7758948)
Ensembl
Ensembl
MGI
PMID:7758948 PMID:9729491 GO_REF:0000107 MGI:1306737 MGI:73363 NCBI chr 7:28,065,570...28,138,734
Ensembl chr 7:28,068,711...28,138,787
JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (MGI:1306737|PMID:9729491) MGI PMID:9729491 MGI:1306737 NCBI chr 9:54,089,046...54,112,595
Ensembl chr 9:54,093,163...54,096,348
JBrowse link
G RUNX2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO (MGI:3042355|PMID:15030764) MGI PMID:15030764 MGI:3042355 NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785
Ensembl chr12:13,628,539...13,840,785
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4431136|PMID:20133625) Ensembl
Ensembl
MGI
PMID:20133625 GO_REF:0000107 MGI:4431136 NCBI chr20:41,675,539...41,800,697
Ensembl chr20:41,675,599...41,800,612
JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:4822095|PMID:20515681) UniProt
Ensembl
UniProt
MGI
PMID:20515681 GO_REF:0000024 GO_REF:0000107 MGI:4822095 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534
JBrowse link
G SIX2 SIX homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4822095|PMID:20515681) Ensembl
Ensembl
MGI
PMID:20515681 GO_REF:0000107 MGI:4822095 NCBI chr10:47,399,152...47,403,503
Ensembl chr10:47,400,034...47,403,509
JBrowse link
G SIX4 SIX homeobox 4 acts_upstream_of_or_within ISO (MGI:4822095|PMID:20515681) MGI PMID:20515681 MGI:4822095 NCBI chr 8:35,735,893...35,748,976
Ensembl chr 8:35,737,058...35,748,893
JBrowse link
G SLC39A1 solute carrier family 39 member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3624433|PMID:16652366) Ensembl
Ensembl
MGI
PMID:16652366 GO_REF:0000107 MGI:3624433 NCBI chr 7:43,171,219...43,174,876
Ensembl chr 7:43,171,287...43,174,036
JBrowse link
G SLC39A3 solute carrier family 39 member 3 acts_upstream_of_or_within ISO (MGI:3624433|PMID:16652366) MGI PMID:16652366 MGI:3624433 NCBI chr20:56,458,318...56,464,099
Ensembl chr20:56,458,035...56,463,922
JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618021|PMID:15183723) MGI
Ensembl
Ensembl
PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr 7:43,696,883...43,778,063
Ensembl chr 7:43,700,445...43,769,983
JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618021|PMID:15183723) MGI
Ensembl
PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:3050165|PMID:15190012) MGI
UniProt
PMID:15190012 GO_REF:0000024 MGI:3050165 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784
JBrowse link
G TBX15 T-box transcription factor 15 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3604843|PMID:15728667) Ensembl
MGI
PMID:15728667 GO_REF:0000107 MGI:3604843 NCBI chr17:56,079,739...56,190,417
Ensembl chr17:56,081,411...56,204,192
JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in
acts_upstream_of_or_within
ISO (MGI:80519|PMID:8622766)
(MGI:80520|PMID:8622765)
UniProt
MGI
PMID:8622765 PMID:8622766 MGI:80519 MGI:80520 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3701721|PMID:16806156) MGI
Ensembl
PMID:16806156 GO_REF:0000107 MGI:3701721 NCBI chr11:56,191,383...56,223,042
Ensembl chr11:56,161,772...56,218,594
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:13,886,869...13,946,480
Ensembl chr23:13,889,000...13,977,636
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
ISO (PMID:8988166), (PMID:8988167)
(MGI:1100098|PMID:8988167)
(MGI:3042355|PMID:15030764)
BHF-UCL
MGI
PMID:8988166 PMID:8988167 PMID:15030764 MGI:1100098 MGI:3042355
G TWIST2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:3042355|PMID:15030764) MGI PMID:15030764 MGI:3042355 NCBI chr25:49,165,450...49,216,545
Ensembl chr25:49,165,641...49,166,123
JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5314316|PMID:22228095) MGI
Ensembl
PMID:22228095 GO_REF:0000107 MGI:5314316 NCBI chr 3:73,115,560...73,213,823
Ensembl chr 3:73,137,250...73,221,512
JBrowse link
G WNT9B Wnt family member 9B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3696935|PMID:16998816)
(MGI:3588895|PMID:16054034)
Ensembl
MGI
PMID:16054034 PMID:16998816 GO_REF:0000107 MGI:3588895 MGI:3696935 NCBI chr 9:10,157,607...10,172,664
Ensembl chr 9:10,149,842...10,172,654
JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:74163|PMID:7670465) MGI
Ensembl
PMID:7670465 GO_REF:0000107 MGI:74163 NCBI chr24:32,083,786...32,119,810
Ensembl chr24:32,083,931...32,111,160
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3663954|PMID:16806149) MGI
Ensembl
Ensembl
PMID:16806149 GO_REF:0000107 MGI:3663954 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:62,435,035...62,438,354
Ensembl chr13:62,434,422...62,438,354
JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611702|PMID:16308329) MGI
Ensembl
PMID:16308329 GO_REF:0000107 MGI:3611702 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611702|PMID:16308329) MGI
Ensembl
Ensembl
PMID:16308329 GO_REF:0000107 MGI:3611702 NCBI chr25:16,630,321...16,665,935
Ensembl chr25:16,632,812...16,663,550
JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
G FOXF2 forkhead box F2 acts_upstream_of_or_within ISO (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chr35:1,841,165...1,846,649
Ensembl chr35:1,841,123...1,846,663
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:1353327 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:1353327 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G MYB MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (MGI:1346939|PMID:10523863) MGI PMID:10523863 MGI:1346939 NCBI chr 1:27,908,309...27,991,984
Ensembl chr 1:27,908,364...27,991,969
JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (MGI:3795695|PMID:18519639)
(PMID:18519639)
BHF-UCL PMID:18519639 MGI:3795695 NCBI chr 1:82,088,090...82,506,131
Ensembl chr 1:82,090,664...82,555,145
JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic involved_in ISO (MGI:3813934|PMID:19097194) UniProt PMID:19097194 MGI:3813934 NCBI chr17:33,659,352...33,669,237
Ensembl chr17:33,659,272...33,668,892
JBrowse link
G RARB retinoic acid receptor beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:18,207,253...18,931,128
Ensembl chr23:18,207,760...18,482,652
JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:14,671,345...14,675,000
Ensembl chr16:14,671,130...14,674,926
JBrowse link
G SALL1 spalt like transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:64,242,742...64,260,021
Ensembl chr 2:64,243,987...64,259,521
JBrowse link
G SCT secretin ISO RGD PMID:1711228 RGD:729899
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr30:37,331,834...37,359,449
Ensembl chr30:37,331,832...37,353,529
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISS
IEA
AgBase
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242
JBrowse link
G TNF tumor necrosis factor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:1,074,561...1,076,425
Ensembl chr12:1,074,552...1,076,425
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3040447|PMID:15017552)
(MGI:3722952|PMID:16618415)
Ensembl
Ensembl
MGI
PMID:15017552 PMID:16618415 GO_REF:0000107 MGI:3040447 MGI:3722952 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:3722952|PMID:16618415), (MGI:5317412|PMID:21492869)
(MGI:5285062|PMID:21550054)
MGI
UniProt
PMID:16618415 PMID:21492869 PMID:21550054 GO_REF:0000024 MGI:3722952 MGI:5285062 MGI:5317412 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G FOXF1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:3590399|PMID:16127717) MGI PMID:16127717 MGI:3590399 NCBI chr25:26,126,172...26,211,474
Ensembl chr25:26,127,853...26,182,989
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:3608164|PMID:16247775) MGI PMID:16247775 MGI:3608164 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G HLX H2.0 like homeobox acts_upstream_of_or_within ISO (MGI:79044|PMID:8557196) MGI PMID:8557196 MGI:79044 NCBI chr38:15,538,744...15,543,686
Ensembl chr38:15,539,029...15,542,152
JBrowse link
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807614|PMID:18635606) Ensembl
Ensembl
MGI
PMID:18635606 GO_REF:0000107 MGI:3807614 NCBI chr 9:37,437,992...37,493,200
Ensembl chr 9:37,438,583...37,492,993
JBrowse link
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1858523|PMID:10821773) MGI PMID:10821773 MGI:1858523 NCBI chr37:25,616,942...25,622,989 JBrowse link
G LOC102151783 inhibitor of DNA binding 2 involved_in ISO (MGI:4399020|PMID:16888283) UniProt PMID:16888283 MGI:4399020 NCBI chr10:54,954,852...54,957,116 JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852
JBrowse link
G OVOL2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (MGI:3618450|PMID:16423343) MGI PMID:16423343 MGI:3618450 NCBI chr24:5,020,608...5,050,487
Ensembl chr24:5,020,813...5,050,309
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:46,729,722...46,775,828
Ensembl chr13:46,730,703...46,773,278
JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr32:30,710,161...30,730,162
Ensembl chr32:30,710,685...30,730,273
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1858523|PMID:10821773) Ensembl
MGI
PMID:10821773 GO_REF:0000107 MGI:1858523 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SHOX2 short stature homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3604918|PMID:16141225) Ensembl
Ensembl
MGI
PMID:16141225 GO_REF:0000107 MGI:3604918 NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566
JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:47,399,152...47,403,503
Ensembl chr10:47,400,034...47,403,509
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISO (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265
G TCF21 transcription factor 21 involved_in ISO
ISS
RGD
UniProt
PMID:11804032 GO_REF:0000024 RGD:727206 NCBI chr 1:26,856,281...26,859,654
Ensembl chr 1:26,856,587...26,859,647
JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr11:22,313,113...22,346,221
Ensembl chr11:22,313,105...22,344,004
JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr28:23,966,079...24,162,775
Ensembl chr28:23,966,073...24,163,737
JBrowse link
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (MGI:1095762|PMID:9268572)
(MGI:1095777|PMID:9272948)
MGI PMID:9268572 PMID:9272948 MGI:1095762 MGI:1095777 NCBI chr18:44,922,042...44,967,557
Ensembl chr18:44,922,150...44,967,550
JBrowse link
G B9D1 B9 domain containing 1 acts_upstream_of_or_within ISO (MGI:5300833|PMID:22179047) MGI PMID:22179047 MGI:5300833 NCBI chr 5:40,854,110...40,866,828
Ensembl chr 5:40,854,127...40,866,824
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1095762|PMID:9268572) Ensembl
Ensembl
MGI
PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4430000|PMID:20043884) Ensembl
Ensembl
MGI
PMID:20043884 GO_REF:0000107 MGI:4430000 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
JBrowse link
G BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3799383|PMID:18539921) Ensembl
MGI
PMID:18539921 GO_REF:0000107 MGI:3799383 NCBI chr29:8,176,977...8,215,561
Ensembl chr29:8,182,508...8,215,868
JBrowse link
G CHST11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (MGI:3767479|PMID:16079159) MGI PMID:16079159 MGI:3767479 NCBI chr10:33,555,629...33,810,808
Ensembl chr10:33,555,628...33,810,558
JBrowse link
G CPLANE1 ciliogenesis and planar polarity effector complex subunit 1 acts_upstream_of_or_within ISO (MGI:5648689|PMID:25877302) MGI PMID:25877302 MGI:5648689 NCBI chr 4:71,435,994...71,567,567
Ensembl chr 4:71,430,575...71,567,267
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:4430000|PMID:20043884)
(MGI:2670493|PMID:12923052)
MGI PMID:12923052 PMID:20043884 MGI:2670493 MGI:4430000 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G ECE1 endothelin converting enzyme 1 involved_in ISO (PMID:9915973) BHF-UCL PMID:9915973 NCBI chr 2:77,732,645...77,793,950
Ensembl chr 2:77,678,686...77,792,114
JBrowse link
G FBXW4 F-box and WD repeat domain containing 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1344213|PMID:10471509)
(MGI:1278141|PMID:9733575)
Ensembl
MGI
PMID:9733575 PMID:10471509 GO_REF:0000107 MGI:1278141 MGI:1344213 NCBI chr28:14,219,724...14,336,846
Ensembl chr28:14,219,893...14,301,924
JBrowse link
G FLVCR1 FLVCR heme transporter 1 acts_upstream_of_or_within ISO (MGI:3775000|PMID:18258918) MGI PMID:18258918 MGI:3775000 NCBI chr 7:11,001,155...11,038,910
Ensembl chr 7:11,001,101...11,035,980
JBrowse link
G FREM2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within ISO (MGI:5646594|PMID:26234751) MGI PMID:26234751 MGI:5646594 NCBI chr25:2,097,264...2,264,049
Ensembl chr25:2,102,849...2,264,456
JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4367921|PMID:19877275)
(MGI:5912570|PMID:27158779)
MGI PMID:19877275 PMID:27158779 MGI:4367921 MGI:5912570 NCBI chr 1:106,742,381...106,752,543
Ensembl chr 1:106,747,860...106,805,699
JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940) MGI PMID:17504940 PMID:17504941 MGI:3710451 MGI:3710452 NCBI chr 1:72,927,346...72,930,119
Ensembl chr 1:72,927,670...72,928,827
JBrowse link
G GJA1 gap junction protein alpha 1 acts_upstream_of_or_within ISO (MGI:3849919|PMID:19439426) MGI PMID:19439426 MGI:3849919 NCBI chr 1:60,941,772...60,944,694
Ensembl chr 1:60,929,097...60,942,936
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3833793|PMID:19056373) MGI PMID:19056373 MGI:3833793 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:5439039|PMID:22841643)
(MGI:3765370|PMID:17714700)
(MGI:1095762|PMID:9268572), (MGI:3692156|PMID:16254602), (MGI:3821634|PMID:19036983)
MGI PMID:9268572 PMID:16254602 PMID:17714700 PMID:19036983 PMID:22841643 MGI:1095762 MGI:3692156 MGI:3765370 MGI:3821634 MGI:5439039 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G GNA12 G protein subunit alpha 12 acts_upstream_of_or_within ISO (MGI:2182490|PMID:12077299) MGI PMID:12077299 MGI:2182490 NCBI chr 6:14,375,144...14,476,018
Ensembl chr 6:14,413,576...14,473,764
JBrowse link
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (MGI:2182490|PMID:12077299) MGI PMID:12077299 MGI:2182490 NCBI chr 1:80,733,530...80,928,065
Ensembl chr 1:80,715,366...80,928,065
JBrowse link
G GRHL2 grainyhead like transcription factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4943100|PMID:21377456) MGI
Ensembl
PMID:21377456 GO_REF:0000107 MGI:4943100 NCBI chr13:3,204,898...3,362,533
Ensembl chr13:3,204,925...3,362,096
JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (MGI:2429440|PMID:12070084) MGI PMID:12070084 MGI:2429440 NCBI chr25:24,140,496...24,143,143
Ensembl chr25:24,141,243...24,152,958
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:68,901,339...68,936,473
Ensembl chr 2:68,901,651...68,936,186
JBrowse link
G HDAC2 histone deacetylase 2 involved_in ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr12:70,053,822...70,083,491
Ensembl chr12:70,053,297...70,103,578
JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
JBrowse link
G HOXC11 homeobox C11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2667742|PMID:12869760) Ensembl
Ensembl
MGI
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr27:1,287,326...1,289,577
Ensembl chr27:1,287,380...1,289,372
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760)
(MGI:83869|PMID:8900279)
(MGI:3765370|PMID:17714700)
MGI PMID:8900279 PMID:12869760 PMID:17714700 MGI:2667742 MGI:3765370 MGI:83869 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
JBrowse link
G HOXD12 homeobox D12 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3765370|PMID:17714700)
(MGI:83869|PMID:8900279)
Ensembl
MGI
PMID:8900279 PMID:17714700 GO_REF:0000107 MGI:3765370 MGI:83869 NCBI chr36:19,907,424...19,910,827
Ensembl chr36:19,907,442...19,908,408
JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (MGI:1097490|PMID:9342042)
(MGI:3765370|PMID:17714700)
(MGI:83869|PMID:8900279)
MGI PMID:8900279 PMID:9342042 PMID:17714700 MGI:1097490 MGI:3765370 MGI:83869 NCBI chr36:19,901,184...19,903,837 JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within ISO (MGI:5505384|PMID:23469164) MGI PMID:23469164 MGI:5505384 NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758
JBrowse link
G IFT52 intraflagellar transport 52 acts_upstream_of_or_within ISO (MGI:3579954|PMID:15930098) MGI PMID:15930098 MGI:3579954 NCBI chr24:31,295,987...31,334,825
Ensembl chr24:31,296,015...31,334,808
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:2660994|PMID:12701101), (MGI:3692156|PMID:16254602)
(MGI:3577662|PMID:15755804), (MGI:3579954|PMID:15930098)
(MGI:3579954|PMID:15930098)
(MGI:3821634|PMID:19036983)
MGI PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 MGI:2660994 MGI:3577662 MGI:3579954 MGI:3692156 MGI:3821634 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266
JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
ISO (PMID:17889828)
(MGI:4822496|PMID:20660756)
AgBase
MGI
PMID:17889828 PMID:20660756 MGI:4822496 NCBI chr37:25,616,942...25,622,989 JBrowse link
G INTU inturned planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5644615|PMID:25774014) Ensembl
Ensembl
MGI
PMID:25774014 GO_REF:0000107 MGI:5644615 NCBI chr19:13,193,252...13,276,593
Ensembl chr19:13,164,245...13,276,496
JBrowse link
G LMBR1 limb development membrane protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2151954|PMID:11606546) MGI
Ensembl
Ensembl
PMID:11606546 GO_REF:0000107 MGI:2151954 NCBI chr16:19,295,235...19,442,390
Ensembl chr16:19,296,149...19,442,369
JBrowse link
G LNPK lunapark, ER junction formation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1097490|PMID:9342042) MGI
Ensembl
PMID:9342042 GO_REF:0000107 MGI:1097490 NCBI chr36:19,731,523...19,809,349
Ensembl chr36:19,732,276...19,808,769
JBrowse link
G LRP4 LDL receptor related protein 4 acts_upstream_of_or_within ISO (MGI:3623169|PMID:16517118) MGI PMID:16517118 MGI:3623169 NCBI chr18:42,616,683...42,667,297
Ensembl chr18:42,616,426...42,665,794
JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (MGI:3045836|PMID:15142971) MGI PMID:15142971 MGI:3045836 NCBI chr18:49,439,494...49,555,375
Ensembl chr18:49,439,483...49,516,396
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3045836|PMID:15142971)
(MGI:4413372|PMID:19795512)
MGI PMID:15142971 PMID:19795512 MGI:3045836 MGI:4413372 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 involved_in
acts_upstream_of_or_within
ISO (PMID:26755636)
(MGI:5771618|PMID:26755636)
UniProt
MGI
PMID:26755636 MGI:5771618 NCBI chr36:17,353,829...17,515,247
Ensembl chr36:17,341,300...17,514,869
JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4367169|PMID:19776033)
(MGI:5487695|PMID:23454480)
(MGI:4868517|PMID:21045211)
Ensembl
Ensembl
MGI
PMID:19776033 PMID:21045211 PMID:23454480 GO_REF:0000107 MGI:4367169 MGI:4868517 MGI:5487695 NCBI chr 9:32,865,972...32,878,712
Ensembl chr 9:32,860,995...32,879,338
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407
JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (MGI:3790402|PMID:17360777) MGI PMID:17360777 MGI:3790402 NCBI chr17:11,720,857...11,724,308 JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 9:31,455,389...31,456,057 JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228
JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225
JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804) MGI PMID:9636176 PMID:15755804 MGI:1267118 MGI:3577662 NCBI chr12:24,388,530...24,438,956
Ensembl chr12:24,387,643...24,421,869
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (MGI:4822496|PMID:20660756) MGI PMID:20660756 MGI:4822496 NCBI chr 1:95,209,122...95,280,956
Ensembl chr 1:95,088,745...95,280,151
JBrowse link
G SALL1 spalt like transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:64,242,742...64,260,021
Ensembl chr 2:64,243,987...64,259,521
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3806414|PMID:18729207) Ensembl
Ensembl
MGI
PMID:18729207 GO_REF:0000107 MGI:3806414 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940)
(MGI:3039193|PMID:15075292), (MGI:4822496|PMID:20660756)
(MGI:3579954|PMID:15930098)
Ensembl
MGI
PMID:15075292 PMID:15930098 PMID:17504940 PMID:17504941 PMID:20660756 GO_REF:0000107 MGI:3039193 MGI:3579954 MGI:3710451 MGI:3710452 MGI:4822496 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SMAD4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:23,875,989...23,930,027
Ensembl chr 1:23,882,139...23,969,405
JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chr 1:60,662,704...60,873,881
Ensembl chr 1:60,667,721...60,873,614
JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736
JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within
involved_in
ISO (MGI:5532232|PMID:23844108)
(MGI:5776065|PMID:27046536)
(PMID:12116211), (PMID:9207801)
MGI
UniProt
PMID:9207801 PMID:12116211 PMID:23844108 PMID:27046536 MGI:5532232 MGI:5776065 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
JBrowse link
G TMEM107 transmembrane protein 107 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:32,991,000...32,993,319
Ensembl chr 5:32,991,021...32,993,248
JBrowse link
G TMEM231 transmembrane protein 231 acts_upstream_of_or_within ISO (MGI:5300833|PMID:22179047) MGI PMID:22179047 MGI:5300833 NCBI chr 5:75,246,043...75,266,705
Ensembl chr 5:75,246,043...75,265,021
JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chr25:48,782,448...48,836,993
Ensembl chr25:48,782,463...48,834,374
JBrowse link
G TTBK2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (MGI:5493390|PMID:23141541) MGI PMID:23141541 MGI:5493390 NCBI chr30:9,674,911...9,844,860
Ensembl chr30:9,676,828...9,844,838
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3841503|PMID:19286674), (MGI:3844764|PMID:19334287) Ensembl
MGI
PMID:19286674 PMID:19334287 GO_REF:0000107 MGI:3841503 MGI:3844764 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:3042355|PMID:15030764) MGI PMID:15030764 MGI:3042355
G UCP3 uncoupling protein 3 acts_upstream_of_or_within ISO (MGI:3821640|PMID:19004860) MGI PMID:19004860 MGI:3821640 NCBI chr21:24,272,522...24,290,304
Ensembl chr21:24,277,896...24,288,639
JBrowse link
G WDPCP WD repeat containing planar cell polarity effector acts_upstream_of_or_within
involved_in
ISO (MGI:5544506|PMID:24302887)
(PMID:27158779)
MGI
GO_Central
PMID:24302887 PMID:27158779 MGI:5544506 NCBI chr10:62,894,818...63,316,555
Ensembl chr10:62,877,527...63,316,345
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4413372|PMID:19795512) MGI
Ensembl
Ensembl
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 ISO RGD PMID:19191224 RGD:2312786 NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS52 VPS52 subunit of GARP complex acts_upstream_of_or_within ISO (MGI:5449815|PMID:23142660) MGI PMID:23142660 MGI:5449815 NCBI chr12:2,697,508...2,712,831
Ensembl chr12:2,697,508...2,712,831
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RET ret proto-oncogene acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3513229|PMID:15569713) MGI
Ensembl
Ensembl
PMID:15569713 GO_REF:0000107 MGI:3513229 NCBI chr28:3,946,132...3,995,505
Ensembl chr28:3,947,232...3,994,210
JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within ISO (MGI:3513229|PMID:15569713) MGI PMID:15569713 MGI:3513229 NCBI chr10:16,621,445...16,665,366 JBrowse link
G WNT4 Wnt family member 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624584|PMID:16546160) MGI
Ensembl
PMID:16546160 GO_REF:0000107 MGI:3624584 NCBI chr 2:77,112,045...77,129,702
Ensembl chr 2:77,101,300...77,127,111
JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) MGI PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within ISO (MGI:3608158|PMID:16207763)
(MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695)
(MGI:3624188|PMID:16611695)
MGI PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664
JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr10:56,632,801...56,694,872
Ensembl chr10:56,579,899...56,787,187
JBrowse link
G FBN1 fibrillin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:14,640,973...14,864,151
Ensembl chr30:14,640,973...14,864,151
JBrowse link
G FBN2 fibrillin 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr11:17,311,238...17,551,536
Ensembl chr11:17,311,226...17,551,536
JBrowse link
G FOXL2 forkhead box L2 acts_upstream_of_or_within ISO (MGI:3043431|PMID:15056605) MGI PMID:15056605 MGI:3043431 NCBI chr23:35,145,856...35,147,185 JBrowse link
G MFAP2 microfibril associated protein 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:81,217,197...81,223,726
Ensembl chr 2:81,220,431...81,224,243
JBrowse link
G MFAP5 microfibril associated protein 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:37,028,518...37,042,657
Ensembl chr27:37,028,037...37,040,592
JBrowse link
G RARB retinoic acid receptor beta involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3608158|PMID:16207763) Ensembl
MGI
PMID:16207763 GO_REF:0000107 MGI:3608158 NCBI chr23:18,207,253...18,931,128
Ensembl chr23:18,207,760...18,482,652
JBrowse link
G RARG retinoic acid receptor gamma acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3608158|PMID:16207763) MGI
Ensembl
PMID:16207763 GO_REF:0000107 MGI:3608158 NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476
JBrowse link
G VAX2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO (MGI:2157790|PMID:11830579)
(MGI:1349226|PMID:10595508)
MGI PMID:10595508 PMID:11830579 MGI:1349226 MGI:2157790 NCBI chr10:69,252,926...69,262,225 JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within ISO (MGI:1861876|PMID:10921901) MGI PMID:10921901 MGI:1861876 NCBI chr23:8,211,555...8,225,596
Ensembl chr23:8,192,483...8,218,894
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3820452|PMID:18692041) MGI PMID:18692041 MGI:3820452 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3821807|PMID:18794329) MGI
Ensembl
PMID:18794329 GO_REF:0000107 MGI:3821807 NCBI chr19:29,916,994...30,063,243
Ensembl chr19:29,921,636...30,063,216
JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:2135612|PMID:11493558) MGI PMID:11493558 MGI:2135612 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
G FOXP4 forkhead box P4 acts_upstream_of_or_within ISO (MGI:3054576|PMID:15361625) MGI PMID:15361625 MGI:3054576 NCBI chr12:10,239,402...10,292,892
Ensembl chr12:10,258,166...10,291,125
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:87488|PMID:9136932)
(MGI:87489|PMID:9136933)
MGI PMID:9136932 PMID:9136933 MGI:87488 MGI:87489 NCBI chr25:26,126,172...26,211,474
Ensembl chr25:26,127,853...26,182,989
JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr36:25,965,243...26,054,775
Ensembl chr36:25,965,938...26,054,760
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1277744|PMID:9731532) Ensembl
MGI
PMID:9731532 GO_REF:0000107 MGI:1277744 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618021|PMID:15183723) MGI
Ensembl
Ensembl
PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr 7:43,696,883...43,778,063
Ensembl chr 7:43,700,445...43,769,983
JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618021|PMID:15183723) MGI
Ensembl
PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337
JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in
ISO (MGI:4415813|PMID:18462699)
(MGI:4355651|PMID:19619492)
(MGI:4946573|PMID:21305474)
MGI
BHF-UCL
PMID:18462699 PMID:19619492 PMID:21305474 MGI:4355651 MGI:4415813 MGI:4946573 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
JBrowse link
embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3046038|PMID:15069081), (MGI:4422129|PMID:20034106) MGI
Ensembl
Ensembl
PMID:15069081 PMID:20034106 GO_REF:0000107 MGI:3046038 MGI:4422129 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
G ALX3 ALX homeobox 3 acts_upstream_of_or_within ISO (MGI:2151109|PMID:11641221) MGI PMID:11641221 MGI:2151109 NCBI chr 6:41,899,288...41,907,832
Ensembl chr 6:41,903,474...41,906,963
JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (MGI:2151109|PMID:11641221) MGI PMID:11641221 MGI:2151109 NCBI chr18:44,922,042...44,967,557
Ensembl chr18:44,922,150...44,967,550
JBrowse link
G CACNA1C calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) BHF-UCL PMID:15454078 NCBI chr27:44,007,363...44,748,251
Ensembl chr27:44,008,020...44,746,429
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:71462|PMID:7720575) MGI
Ensembl
PMID:7720575 GO_REF:0000107 MGI:71462 NCBI chr 7:41,277,580...41,282,158
Ensembl chr 7:41,277,644...41,281,833
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3055626|PMID:15371327) MGI PMID:15371327 MGI:3055626 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within ISO (MGI:1194987|PMID:9362463) MGI PMID:9362463 MGI:1194987 NCBI chr19:31,124,325...31,129,538 JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within ISO (MGI:5462316|PMID:22916278) MGI PMID:22916278 MGI:5462316 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
JBrowse link
G HOXA13 homeobox A13 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530958|PMID:15733672) MGI
Ensembl
Ensembl
PMID:15733672 GO_REF:0000107 MGI:3530958 NCBI chr14:40,371,234...40,375,261
Ensembl chr14:40,373,059...40,375,980
JBrowse link
G HOXA9 homeobox A9 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:78984|PMID:8625797) Ensembl