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ONTOLOGY REPORT - ANNOTATIONS

Term:embryo development
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Accession:GO:0009790 term browser browse the term
Definition:The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
Synonyms:exact_synonym: embryogenesis;   embryonal development
 broad_synonym: embryogenesis and morphogenesis
 alt_id: GO:0009795
 xref: Wikipedia:Embryogenesis

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anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 acts_upstream_of_or_within ISO (PMID:21515572) MGI PMID:21515572 NCBI chrNW_004955403:24,315,712...24,326,271 JBrowse link
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) BHF-UCL PMID:17286298 MGI:3721767 NCBI chrNW_004955414:19,188,830...19,197,728
Ensembl chrNW_004955414:19,187,388...19,197,728 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21515572) MGI PMID:21515572 NCBI chrNW_004955417:26,401,337...26,533,297
Ensembl chrNW_004955417:26,401,363...26,533,297 		JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1 like acts_upstream_of_or_within ISO (PMID:26787558) MGI PMID:26787558 NCBI chrNW_004955455:7,739,105...7,879,489
Ensembl chrNW_004955455:7,739,463...7,882,427 		JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chrNW_004955524:2,439,594...2,506,539
Ensembl chrNW_004955524:2,439,594...2,506,538 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:8622765) MGI PMID:8622765 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO (PMID:9790191) MGI PMID:9790191 NCBI chrNW_004955420:25,476,975...25,479,969
Ensembl chrNW_004955420:25,477,122...25,479,969 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO (PMID:15870281) MGI PMID:15870281 NCBI chrNW_004955405:9,785,857...9,884,220
Ensembl chrNW_004955405:9,843,925...9,884,220 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO (MGI:6109647|PMID:28839193)
(PMID:28839193)		 UniProt PMID:28839193 MGI:6109647 NCBI chrNW_004955430:6,440,655...6,480,956
Ensembl chrNW_004955430:6,442,084...6,480,802 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:9207801) UniProt PMID:9207801 NCBI chrNW_004955455:15,988,153...16,000,156
Ensembl chrNW_004955455:15,988,663...16,000,063 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (PMID:14668413) MGI PMID:14668413 NCBI chrNW_004955424:2,139,576...2,286,183
Ensembl chrNW_004955424:2,137,865...2,286,181 		JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (MGI:4835157|PMID:9054360) BHF-UCL PMID:9054360 MGI:4835157 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:15967824) MGI PMID:15967824 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244 		JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within ISO (PMID:15967824) MGI PMID:15967824 NCBI chrNW_004955470:2,740,682...2,780,225 JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16245338) MGI PMID:16245338 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004955454:2,461,526...2,482,734
Ensembl chrNW_004955454:2,461,760...2,482,098 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004955496:666,728...732,829
Ensembl chrNW_004955496:666,404...717,862 		JBrowse link
G Slitrk6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:19936227) MGI PMID:19936227 NCBI chrNW_004955404:22,738,080...22,744,601
Ensembl chrNW_004955404:22,737,974...22,745,046 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO (PMID:24302887) MGI PMID:24302887 NCBI chrNW_004955424:20,723,592...21,114,801 JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd24 ankyrin repeat domain 24 involved_in ISO (MGI:6885507|PMID:35175278)
(PMID:35175278)		 UniProt PMID:35175278 MGI:6885507 NCBI chrNW_004955495:4,621,059...4,636,235 JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:11875276) MGI PMID:11875276 NCBI chrNW_004955561:1,727,935...1,851,907
Ensembl chrNW_004955561:1,727,935...1,851,907 		JBrowse link
G Cdh23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:7610888), (PMID:8790740), (PMID:9039475)
(PMID:11322776)
(PMID:11138008), (PMID:17050716), (PMID:23217710)
(PMID:12121736)
(PMID:15537665)		 MGI PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... NCBI chrNW_004955437:19,683,792...20,044,718
Ensembl chrNW_004955437:19,684,473...20,003,819 		JBrowse link
G Clic5 chloride intracellular channel 5 acts_upstream_of_or_within ISO (PMID:17021174) MGI PMID:17021174 NCBI chrNW_004955437:11,053,885...11,118,150
Ensembl chrNW_004955437:11,053,885...11,118,255 		JBrowse link
G Clrn1 clarin 1 acts_upstream_of_or_within ISO (PMID:19414487), (PMID:19423712) MGI PMID:19414487 PMID:19423712 NCBI chrNW_004955448:2,062,647...2,106,548
Ensembl chrNW_004955448:2,062,647...2,106,548 		JBrowse link
G Clrn2 clarin 2 involved_in ISO (MGI:6810803|PMID:33496845) UniProt PMID:33496845 MGI:6810803 NCBI chrNW_004955480:6,634,653...6,645,499
Ensembl chrNW_004955480:6,631,962...6,645,499 		JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within ISO (PMID:30380417) MGI PMID:30380417 NCBI chrNW_004955415:8,203,968...8,220,148
Ensembl chrNW_004955415:8,203,968...8,220,148 		JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within ISO (PMID:17876667), (PMID:23217710)
(PMID:15905332)		 MGI PMID:15905332 PMID:17876667 PMID:23217710 NCBI chrNW_004955437:3,644,448...3,650,688 JBrowse link
G Myo3a myosin IIIA involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chrNW_004955429:3,172,457...3,358,688
Ensembl chrNW_004955429:3,172,996...3,358,688 		JBrowse link
G Myo3b myosin IIIB involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chrNW_004955449:4,128,816...4,546,651
Ensembl chrNW_004955449:4,129,823...4,546,296 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO (PMID:11753415)
(PMID:12121736)
(PMID:17050716)		 MGI PMID:11753415 PMID:12121736 PMID:17050716 NCBI chrNW_004955414:14,576,356...14,647,500
Ensembl chrNW_004955414:14,576,356...14,647,500 		JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 acts_upstream_of_or_within ISO (PMID:24920589) MGI PMID:24920589 NCBI chrNW_004955553:1,639,267...1,656,850
Ensembl chrNW_004955553:1,639,267...1,656,850 		JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO (PMID:11124469)
(PMID:10978835)
(PMID:16887306)
(PMID:15537665)
(PMID:23217710)		 MGI PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 NCBI chrNW_004955425:8,443,523...9,203,177
Ensembl chrNW_004955425:8,428,680...8,899,028 		JBrowse link
G Pdzd7 PDZ domain containing 7 acts_upstream_of_or_within ISO (PMID:24334608) MGI PMID:24334608 NCBI chrNW_004955485:9,166,721...9,183,129
Ensembl chrNW_004955485:9,166,745...9,182,427 		JBrowse link
G Pls1 plastin 1 involved_in ISO (MGI:5608770|PMID:25124451) UniProt PMID:25124451 MGI:5608770 NCBI chrNW_004955508:3,215,304...3,324,240
Ensembl chrNW_004955508:3,213,646...3,260,554 		JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in ISO (MGI:5789047|PMID:27269051) UniProt PMID:27269051 MGI:5789047 NCBI chrNW_004955483:2,048,236...2,257,078
Ensembl chrNW_004955483:2,048,324...2,256,589 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004955454:2,461,526...2,482,734
Ensembl chrNW_004955454:2,461,760...2,482,098 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004955496:666,728...732,829
Ensembl chrNW_004955496:666,404...717,862 		JBrowse link
G Sod1 superoxide dismutase 1 acts_upstream_of_or_within ISO (PMID:10464373), (PMID:10466888) MGI PMID:10464373 PMID:10466888 NCBI chrNW_004955407:31,261,451...31,267,657
Ensembl chrNW_004955407:31,263,863...31,267,727 		JBrowse link
G Strc stereocilin involved_in
acts_upstream_of_or_within		 ISO (MGI:5430850|PMID:21165971)
(PMID:30801007)
(PMID:18849963)		 UniProt
MGI		 PMID:18849963 PMID:21165971 PMID:30801007 MGI:5430850 NCBI chrNW_004955416:10,139,420...10,141,906 JBrowse link
G Tecta tectorin alpha acts_upstream_of_or_within ISO (PMID:30801007) MGI PMID:30801007 NCBI chrNW_004955412:22,062,618...22,132,037
Ensembl chrNW_004955412:22,062,618...22,131,442 		JBrowse link
G Tprn taperin acts_upstream_of_or_within ISO (PMID:30380417) MGI PMID:30380417 NCBI chrNW_004955513:5,196,871...5,205,945
Ensembl chrNW_004955513:5,197,280...5,203,445 		JBrowse link
G Whrn whirlin acts_upstream_of_or_within ISO (PMID:27117407) MGI PMID:27117407 NCBI chrNW_004955419:13,116,001...13,207,266
Ensembl chrNW_004955419:13,116,001...13,207,266 		JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO (PMID:9230313) MGI PMID:9230313 NCBI chrNW_004955442:16,845,728...16,898,301
Ensembl chrNW_004955442:16,843,152...16,898,430 		JBrowse link
G Epha2 EPH receptor A2 acts_upstream_of_or_within ISO (PMID:11287184) MGI PMID:11287184 NCBI chrNW_004955527:2,120,447...2,151,932
Ensembl chrNW_004955527:2,120,266...2,152,781 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:14511481) MGI PMID:14511481 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20630950) MGI PMID:20630950 NCBI chrNW_004955475:10,687,168...10,710,286
Ensembl chrNW_004955475:10,687,367...10,710,053 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541 		JBrowse link
blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1b1 ATPase Na+/K+ transporting subunit beta 1 acts_upstream_of_or_within ISO MGI MGI:1888635 NCBI chrNW_004955462:8,072,519...8,095,311
Ensembl chrNW_004955462:8,073,679...8,094,880 		JBrowse link
G Bnip2 BCL2 interacting protein 2 acts_upstream_of_or_within ISO (PMID:19117032) MGI PMID:19117032 NCBI chrNW_004955450:15,157,411...15,180,069
Ensembl chrNW_004955450:15,157,226...15,180,069 		JBrowse link
G Capn2 calpain 2 acts_upstream_of_or_within ISO (PMID:16433929) MGI PMID:16433929 NCBI chrNW_004955520:1,287,829...1,315,318
Ensembl chrNW_004955520:1,286,356...1,315,328 		JBrowse link
G Cdk11b cyclin dependent kinase 11B acts_upstream_of_or_within ISO (PMID:15060143) MGI PMID:15060143 NCBI chrNW_004955486:9,251,242...9,270,218 JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within ISO (PMID:15788452) MGI PMID:15788452 NCBI chrNW_004955497:7,316,372...7,321,627 JBrowse link
G Dad1 defender against cell death 1 acts_upstream_of_or_within ISO (PMID:10748466) MGI PMID:10748466 NCBI chrNW_004955409:37,670,266...37,688,226
Ensembl chrNW_004955409:37,670,274...37,688,391 		JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 acts_upstream_of_or_within ISO (PMID:15452149) MGI PMID:15452149 NCBI chrNW_004955477:863,388...899,703 JBrowse link
G Elf3 E74 like ETS transcription factor 3 acts_upstream_of_or_within ISO (PMID:16630543) MGI PMID:16630543 NCBI chrNW_004955406:38,126,633...38,131,292
Ensembl chrNW_004955406:38,126,349...38,132,123 		JBrowse link
G Emg1 EMG1 N1-specific pseudouridine methyltransferase acts_upstream_of_or_within ISO (PMID:20858271) MGI PMID:20858271 NCBI chrNW_004955413:4,563,864...4,570,809
Ensembl chrNW_004955413:4,563,864...4,570,809 		JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO (PMID:15788452) MGI PMID:15788452 NCBI chrNW_004955430:19,280,460...19,287,060
Ensembl chrNW_004955430:19,281,602...19,286,867 		JBrowse link
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (PMID:16630543) MGI PMID:16630543 NCBI chrNW_004955468:4,857,023...4,859,926
Ensembl chrNW_004955468:4,857,595...4,860,531 		JBrowse link
G G2e3 G2/M-phase specific E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:18511420) MGI PMID:18511420 NCBI chrNW_004955409:29,908,075...29,965,331
Ensembl chrNW_004955409:29,908,148...29,945,497 		JBrowse link
G Gdf9 growth differentiation factor 9 involved_in ISO (PMID:24313324) AgBase PMID:24313324 NCBI chrNW_004955408:4,234,208...4,239,795 JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 involved_in ISO (PMID:11802795) BHF-UCL PMID:11802795 NCBI chrNW_004955408:8,848,723...8,851,804
Ensembl chrNW_004955408:8,848,559...8,851,994 		JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO (PMID:16880268) MGI PMID:16880268 NCBI chrNW_004955455:10,694,102...10,717,613
Ensembl chrNW_004955455:10,694,102...10,717,613 		JBrowse link
G Hormad1 HORMA domain containing 1 involved_in ISO (MGI:4868505|PMID:21079677) UniProt PMID:21079677 MGI:4868505 NCBI chrNW_004955413:130,214...155,381
Ensembl chrNW_004955413:132,711...152,720 		JBrowse link
G Kpna7 karyopherin subunit alpha 7 acts_upstream_of_or_within ISO (PMID:20699224) MGI PMID:20699224 NCBI chrNW_004955460:14,901,350...14,931,209
Ensembl chrNW_004955460:14,901,207...14,924,746 		JBrowse link
G Med21 mediator complex subunit 21 acts_upstream_of_or_within ISO (PMID:10500093) MGI PMID:10500093 NCBI chrNW_004955413:21,898,579...21,904,759
Ensembl chrNW_004955413:21,898,514...21,908,167 		JBrowse link
G N4bp2l2 NEDD4 binding protein 2 like 2 acts_upstream_of_or_within ISO (PMID:18360097) MGI PMID:18360097 NCBI chrNW_004955431:13,314,075...13,418,090 JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (MGI:3694318|PMID:16728391) UniProt PMID:16728391 MGI:3694318 NCBI chrNW_004955464:12,667,050...12,697,021
Ensembl chrNW_004955464:12,667,050...12,697,769 		JBrowse link
G Nek2 NIMA related kinase 2 acts_upstream_of_or_within ISO (PMID:19117032) MGI PMID:19117032 NCBI chrNW_004955406:5,553,661...5,563,648
Ensembl chrNW_004955406:5,553,819...5,566,361 		JBrowse link
G Npm2 nucleophosmin/nucleoplasmin 2 involved_in ISO (PMID:12714744) UniProt PMID:12714744 NCBI chrNW_004955403:45,517,426...45,539,216
Ensembl chrNW_004955403:45,517,396...45,539,274 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (MGI:4946964|PMID:21258368)
(PMID:21258368)		 BHF-UCL PMID:21258368 MGI:4946964 NCBI chrNW_004955583:995,707...1,003,202 JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma acts_upstream_of_or_within ISO (PMID:12606345) MGI PMID:12606345 NCBI chrNW_004955482:7,582,605...7,605,340
Ensembl chrNW_004955482:7,578,782...7,606,132 		JBrowse link
G Psmc3 proteasome 26S subunit, ATPase 3 acts_upstream_of_or_within ISO (PMID:10945464) MGI PMID:10945464 NCBI chrNW_004955422:837,934...843,161
Ensembl chrNW_004955422:837,573...845,341 		JBrowse link
G Psmc4 proteasome 26S subunit, ATPase 4 acts_upstream_of_or_within ISO (PMID:10945464) MGI PMID:10945464 NCBI chrNW_004955578:1,113,445...1,120,050
Ensembl chrNW_004955578:1,113,445...1,120,370 		JBrowse link
G Rpl13 ribosomal protein L13 acts_upstream_of ISO (PMID:26902285) MGI PMID:26902285 NCBI chrNW_004955541:3,149,438...3,152,210
Ensembl chrNW_004955541:3,149,438...3,152,210 		JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 acts_upstream_of ISO (PMID:26902285) MGI PMID:26902285 NCBI chrNW_004955487:5,477,097...5,481,422
Ensembl chrNW_004955487:5,476,954...5,483,049 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 acts_upstream_of_or_within ISO (PMID:11263494)
(PMID:11313485)		 MGI PMID:11263494 PMID:11313485 NCBI chrNW_004955455:8,420,263...8,457,105
Ensembl chrNW_004955455:8,415,839...8,457,097 		JBrowse link
G Spic Spi-C transcription factor acts_upstream_of_or_within ISO (PMID:16630543) MGI PMID:16630543 NCBI chrNW_004955405:36,946,481...36,956,472
Ensembl chrNW_004955405:36,946,395...36,957,418 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:9921650) MGI PMID:9921650 NCBI chrNW_004955419:26,490,899...26,546,349
Ensembl chrNW_004955419:26,490,899...26,547,017 		JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (PMID:9921650) MGI PMID:9921650 NCBI chrNW_004955423:2,573,851...2,765,353
Ensembl chrNW_004955423:2,573,795...2,765,772 		JBrowse link
G Thoc2 THO complex 2 acts_upstream_of_or_within ISO (PMID:24315442) MGI PMID:24315442 NCBI chrNW_004955473:11,029,860...11,143,493
Ensembl chrNW_004955473:11,029,714...11,144,880 		JBrowse link
G Thoc5 THO complex subunit 5 acts_upstream_of_or_within ISO (PMID:24315442) MGI PMID:24315442 NCBI chrNW_004955455:3,761,933...3,795,517
Ensembl chrNW_004955455:3,761,874...3,795,517 		JBrowse link
G Xab2 XPA binding protein 2 acts_upstream_of_or_within ISO (PMID:15725628) MGI PMID:15725628 NCBI chrNW_004955563:1,630,403...1,638,333
Ensembl chrNW_004955563:1,630,403...1,641,037 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of ISO (PMID:26902285) MGI PMID:26902285 NCBI chrNW_004955412:5,423,866...5,533,728
Ensembl chrNW_004955412:5,423,855...5,534,408 		JBrowse link
blastocyst formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin like 6A acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955420:8,745,390...8,764,993
Ensembl chrNW_004955420:8,744,597...8,764,993 		JBrowse link
G Bysl bystin like acts_upstream_of_or_within ISO (PMID:17242206) MGI PMID:17242206 NCBI chrNW_004955437:8,257,081...8,266,627
Ensembl chrNW_004955437:8,257,081...8,266,875 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 acts_upstream_of_or_within ISO (PMID:17784788) MGI PMID:17784788 NCBI chrNW_004955550:1,108,764...1,138,862
Ensembl chrNW_004955550:1,108,449...1,138,862 		JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme involved_in ISO (MGI:5702364|PMID:26416966)
(PMID:26416966)		 CACAO PMID:26416966 MGI:5702364 NCBI chrNW_004955416:14,915,031...14,947,634
Ensembl chrNW_004955416:14,936,546...14,949,252 		JBrowse link
G Gabpa GA binding protein transcription factor subunit alpha acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955407:25,609,840...25,641,886
Ensembl chrNW_004955407:25,609,972...25,641,879 		JBrowse link
G Kdm4c lysine demethylase 4C acts_upstream_of_or_within ISO (PMID:19696013) MGI PMID:19696013 NCBI chrNW_004955434:10,646,524...11,000,589
Ensembl chrNW_004955434:10,685,704...11,000,644 		JBrowse link
G Matr3 matrin 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955418:1,213,503...1,269,755
Ensembl chrNW_004955418:1,213,503...1,269,746 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO (PMID:16083859) MGI PMID:16083859 NCBI chrNW_004955486:1,937,873...1,962,577
Ensembl chrNW_004955486:1,937,802...1,962,772 		JBrowse link
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955413:23,901,987...23,917,720
Ensembl chrNW_004955413:23,902,707...23,917,542 		JBrowse link
G Mxi1 MAX interactor 1, dimerization protein acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955485:1,088,175...1,156,521
Ensembl chrNW_004955485:1,088,175...1,156,925 		JBrowse link
G Nop2 NOP2 nucleolar protein acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955413:4,180,463...4,190,827
Ensembl chrNW_004955413:4,180,573...4,190,490 		JBrowse link
G Pbrm1 polybromo 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955430:2,536,086...2,671,094
Ensembl chrNW_004955430:2,536,086...2,670,617 		JBrowse link
G Pnldc1 PARN like ribonuclease domain containing exonuclease 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955439:21,039,638...21,058,558
Ensembl chrNW_004955439:21,035,825...21,058,549 		JBrowse link
G Ptpn18 protein tyrosine phosphatase non-receptor type 18 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955459:65,191...90,459
Ensembl chrNW_004955459:65,612...91,545 		JBrowse link
G Rpl7l1 ribosomal protein L7 like 1 acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chrNW_004955437:8,903,274...8,916,598
Ensembl chrNW_004955437:8,903,274...8,908,717 		JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chrNW_004955413:27,936,427...27,941,311
Ensembl chrNW_004955413:27,933,775...27,941,334 		JBrowse link
G Rtn4 reticulon 4 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955424:28,061,346...28,125,838 JBrowse link
G Sf3b1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chrNW_004955403:3,134,960...3,163,395
Ensembl chrNW_004955403:3,134,955...3,166,121 		JBrowse link
G Sf3b6 splicing factor 3b subunit 6 acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chrNW_004955469:6,275,894...6,286,908
Ensembl chrNW_004955469:6,275,900...6,286,908 		JBrowse link
G Skil SKI like proto-oncogene acts_upstream_of_or_within ISO (PMID:10811619) MGI PMID:10811619 NCBI chrNW_004955420:530,531...554,308
Ensembl chrNW_004955420:530,528...554,551 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955481:4,462,270...4,497,364
Ensembl chrNW_004955481:4,462,270...4,497,364 		JBrowse link
G Tead4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO (PMID:18804437) MGI PMID:18804437 NCBI chrNW_004955429:18,497,223...18,552,504
Ensembl chrNW_004955429:18,497,223...18,552,504 		JBrowse link
G Tjp1 tight junction protein 1 acts_upstream_of_or_within ISO (PMID:18423437) MGI PMID:18423437 NCBI chrNW_004955416:28,640,807...28,869,717
Ensembl chrNW_004955416:28,654,905...28,870,555 		JBrowse link
G Tm4sf1 transmembrane 4 L six family member 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955448:608,724...617,189
Ensembl chrNW_004955448:608,605...633,288 		JBrowse link
G Txnrd3 thioredoxin reductase 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955429:16,845,466...16,880,481
Ensembl chrNW_004955429:16,845,526...16,879,797 		JBrowse link
G Uspl1 ubiquitin specific peptidase like 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955431:15,173,448...15,212,443
Ensembl chrNW_004955431:15,173,625...15,209,473 		JBrowse link
G Wdr74 WD repeat domain 74 acts_upstream_of_or_within ISO (PMID:21799883), (PMID:27869233) MGI PMID:21799883 PMID:27869233 NCBI chrNW_004955599:408,076...413,770
Ensembl chrNW_004955599:407,207...413,770 		JBrowse link
G Zp3 zona pellucida glycoprotein 3 involved_in ISO (MGI:4943828|PMID:20382503) UniProt PMID:20382503 MGI:4943828 NCBI chrNW_004955456:15,013,472...15,020,809 JBrowse link
blastocyst growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (PMID:24036311) MGI PMID:24036311 NCBI chrNW_004955414:26,347,508...26,373,726
Ensembl chrNW_004955414:26,347,508...26,373,785 		JBrowse link
G Ints1 integrator complex subunit 1 acts_upstream_of_or_within ISO (PMID:17544522) MGI PMID:17544522 NCBI chrNW_004955460:9,116,650...9,149,470
Ensembl chrNW_004955460:9,116,891...9,143,120 		JBrowse link
G Nbn nibrin involved_in ISO (MGI:2680772|PMID:14612522)
(PMID:14612522)		 UniProt PMID:14612522 MGI:2680772 NCBI chrNW_004955417:6,840,916...6,880,479
Ensembl chrNW_004955417:6,839,312...6,880,133 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:24036311) MGI PMID:24036311 NCBI chrNW_004955583:995,707...1,003,202 JBrowse link
G Rad51b RAD51 paralog B acts_upstream_of_or_within ISO (PMID:10567591) MGI PMID:10567591 NCBI chrNW_004955466:1,686,472...2,388,146
Ensembl chrNW_004955466:2,137,192...2,381,450 		JBrowse link
G Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (PMID:24036311) MGI PMID:24036311 NCBI chrNW_004955416:8,237,439...8,293,802
Ensembl chrNW_004955416:8,237,439...8,293,802 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:11163203) MGI PMID:11163203 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397 		JBrowse link
G Znf830 zinc finger protein 830 acts_upstream_of_or_within ISO (PMID:15988037) MGI PMID:15988037 NCBI chrNW_004955481:9,661,791...9,663,326
Ensembl chrNW_004955481:9,661,830...9,662,918 		JBrowse link
blastocyst hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap3 A-kinase anchoring protein 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955413:2,411,618...2,432,658
Ensembl chrNW_004955413:2,411,553...2,433,388 		JBrowse link
G Arhgdig Rho GDP dissociation inhibitor gamma acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955442:16,901,951...16,903,147
Ensembl chrNW_004955442:16,898,552...16,903,685 		JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955415:32,818,592...32,828,651
Ensembl chrNW_004955415:32,817,547...32,828,651 		JBrowse link
G Bcor BCL6 corepressor acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955566:1,412,540...1,510,339
Ensembl chrNW_004955566:1,412,540...1,457,329 		JBrowse link
G Ccdc24 coiled-coil domain containing 24 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955537:3,516,502...3,520,559
Ensembl chrNW_004955537:3,517,132...3,520,219 		JBrowse link
G Ccdc62 coiled-coil domain containing 62 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955482:5,911,233...5,948,178
Ensembl chrNW_004955482:5,912,200...5,948,461 		JBrowse link
G Cmtm3 CKLF like MARVEL transmembrane domain containing 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955433:23,178,062...23,185,666
Ensembl chrNW_004955433:23,178,061...23,185,666 		JBrowse link
G Coprs coordinator of PRMT5 and differentiation stimulator acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955481:6,794,088...6,797,723
Ensembl chrNW_004955481:6,787,135...6,800,696 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955414:26,347,508...26,373,726
Ensembl chrNW_004955414:26,347,508...26,373,785 		JBrowse link
G CUNH6orf141 chromosome unknown C6orf141 homolog acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955410:33,414,621...33,420,002 JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO (PMID:15901638) MGI PMID:15901638 NCBI chrNW_004955451:17,368,600...17,371,981
Ensembl chrNW_004955451:17,368,428...17,372,377 		JBrowse link
G Hcfc1 host cell factor C1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955580:616,477...636,849
Ensembl chrNW_004955580:616,477...635,597 		JBrowse link
G Hs3st6 heparan sulfate-glucosamine 3-sulfotransferase 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955442:15,337,106...15,344,453
Ensembl chrNW_004955442:15,337,106...15,347,251 		JBrowse link
G Lpar6 lysophosphatidic acid receptor 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955431:2,077,093...2,079,000
Ensembl chrNW_004955431:2,077,269...2,078,300 		JBrowse link
G Ndufa2 NADH:ubiquinone oxidoreductase subunit A2 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955418:52,952...55,060
Ensembl chrNW_004955418:52,952...55,060 		JBrowse link
G Necab1 N-terminal EF-hand calcium binding protein 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955417:7,573,861...7,737,920
Ensembl chrNW_004955417:7,573,861...7,737,913 		JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955577:365,031...443,138
Ensembl chrNW_004955577:367,288...443,138 		JBrowse link
G Phf6 PHD finger protein 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955473:527,005...586,589
Ensembl chrNW_004955473:527,005...586,627 		JBrowse link
G Plpp4 phospholipid phosphatase 4 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955551:1,328,652...1,458,714
Ensembl chrNW_004955551:1,328,652...1,459,077 		JBrowse link
G Ppp4r4 protein phosphatase 4 regulatory subunit 4 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955438:16,237,472...16,332,542
Ensembl chrNW_004955438:16,237,472...16,332,542 		JBrowse link
G Rbbp8 RB binding protein 8, endonuclease acts_upstream_of_or_within ISO (PMID:15831459) MGI PMID:15831459 NCBI chrNW_004955402:11,245,857...11,331,872
Ensembl chrNW_004955402:11,245,819...11,335,367 		JBrowse link
G Slc25a34 solute carrier family 25 member 34 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955527:2,433,577...2,437,348
Ensembl chrNW_004955527:2,433,577...2,437,343 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:11163203) MGI PMID:11163203 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 acts_upstream_of_or_within ISO (PMID:11313485)
(PMID:11263494)		 MGI PMID:11263494 PMID:11313485 NCBI chrNW_004955455:8,420,263...8,457,105
Ensembl chrNW_004955455:8,415,839...8,457,097 		JBrowse link
G Smim14 small integral membrane protein 14 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955443:7,762,760...7,828,545
Ensembl chrNW_004955443:7,773,552...7,828,545 		JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955429:10,538,660...10,660,493
Ensembl chrNW_004955429:10,538,661...10,658,008 		JBrowse link
G Stmn3 stathmin 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955528:577,536...583,850
Ensembl chrNW_004955528:577,536...583,850 		JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955455:12,981,899...13,017,194
Ensembl chrNW_004955455:12,981,194...13,017,194 		JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955543:258,479...271,128
Ensembl chrNW_004955543:258,479...272,473 		JBrowse link
G Tbl1xr1 TBL1X/Y related 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955420:6,546,529...6,705,481
Ensembl chrNW_004955420:6,546,529...6,705,487 		JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955534:411,602...485,964
Ensembl chrNW_004955534:409,947...421,888 		JBrowse link
G Zbed6 zinc finger BED-type containing 6 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chrNW_004955406:39,679,365...39,683,454
Ensembl chrNW_004955406:39,680,253...39,683,192 		JBrowse link
branching involved in labyrinthine layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adm adrenomedullin acts_upstream_of_or_within ISO (PMID:16981008) MGI PMID:16981008 NCBI chrNW_004955414:25,951,473...25,953,593
Ensembl chrNW_004955414:25,951,349...25,953,645 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:9435295) MGI PMID:9435295 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO (PMID:23610556) MGI PMID:23610556 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918 		JBrowse link
G Gcm1 glial cells missing transcription factor 1 acts_upstream_of_or_within ISO (PMID:10888880) MGI PMID:10888880 NCBI chrNW_004955411:2,872,758...2,917,154
Ensembl chrNW_004955411:2,898,693...2,917,168 		JBrowse link
G Grb2 growth factor receptor bound protein 2 acts_upstream_of_or_within ISO (PMID:11369229) MGI PMID:11369229 NCBI chrNW_004955553:2,186,590...2,258,964
Ensembl chrNW_004955553:2,186,590...2,259,456 		JBrowse link
G Il10 interleukin 10 acts_upstream_of_or_within ISO (PMID:12842419) MGI PMID:12842419 NCBI chrNW_004955406:42,307,789...42,312,255
Ensembl chrNW_004955406:42,307,664...42,312,779 		JBrowse link
G Llgl2 LLGL scribble cell polarity complex component 2 acts_upstream_of_or_within ISO (PMID:21606200) MGI PMID:21606200 NCBI chrNW_004955553:2,377,640...2,415,152
Ensembl chrNW_004955553:2,378,101...2,415,152 		JBrowse link
G Rspo3 R-spondin 3 acts_upstream_of_or_within ISO (PMID:16963017) MGI PMID:16963017 NCBI chrNW_004955436:8,151,122...8,235,183
Ensembl chrNW_004955436:8,151,122...8,237,861 		JBrowse link
G Socs3 suppressor of cytokine signaling 3 acts_upstream_of_or_within ISO (PMID:11481489) MGI PMID:11481489 NCBI chrNW_004955506:4,222,455...4,225,563
Ensembl chrNW_004955506:4,222,455...4,225,563 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within ISO (PMID:17174946) MGI PMID:17174946 NCBI chrNW_004955416:7,715,536...7,728,759
Ensembl chrNW_004955416:7,715,536...7,729,158 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:30236446) MGI PMID:30236446 NCBI chrNW_004955482:5,404,739...5,415,243
Ensembl chrNW_004955482:5,404,739...5,415,243 		JBrowse link
cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in ISO (MGI:1354065|PMID:10716450) UniProt PMID:10716450 MGI:1354065 NCBI chrNW_004955430:19,280,460...19,287,060
Ensembl chrNW_004955430:19,281,602...19,286,867 		JBrowse link
G Gcm1 glial cells missing transcription factor 1 acts_upstream_of_or_within ISO (PMID:10888880) MGI PMID:10888880 NCBI chrNW_004955411:2,872,758...2,917,154
Ensembl chrNW_004955411:2,898,693...2,917,168 		JBrowse link
G Krt8 keratin 8 acts_upstream_of_or_within ISO (PMID:11062258) MGI PMID:11062258 NCBI chrNW_004955458:178,954...190,310 JBrowse link
G Stk3 serine/threonine kinase 3 acts_upstream_of_or_within ISO (PMID:19786569) MGI PMID:19786569 NCBI chrNW_004955417:14,098,851...14,381,553
Ensembl chrNW_004955417:14,095,694...14,381,607 		JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within ISO (PMID:19786569) MGI PMID:19786569 NCBI chrNW_004955445:12,308,285...12,399,012
Ensembl chrNW_004955445:12,308,285...12,399,012 		JBrowse link
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chrNW_004955583:995,707...1,003,202 JBrowse link
cell migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amot angiomotin acts_upstream_of_or_within ISO (PMID:12676095) MGI PMID:12676095 NCBI chrNW_004955490:2,965,899...3,042,541
Ensembl chrNW_004955490:2,965,539...3,042,606 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (PMID:15004567) MGI PMID:15004567 NCBI chrNW_004955434:17,738,281...17,740,823
Ensembl chrNW_004955434:17,734,495...17,740,823 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:15142971) MGI PMID:15142971 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15142971) MGI PMID:15142971 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISO (PMID:23063620) UniProt PMID:23063620 NCBI chrNW_004955555:549,921...591,978
Ensembl chrNW_004955555:548,416...591,978 		JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within ISO (PMID:17151016) MGI PMID:17151016 NCBI chrNW_004955489:418,650...422,428 JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004955403:14,476,689...14,554,380
Ensembl chrNW_004955403:14,480,162...14,554,702 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:15004567) MGI PMID:15004567 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO (PMID:21069829) MGI PMID:21069829 NCBI chrNW_004955476:11,827,004...11,833,495
Ensembl chrNW_004955476:11,827,004...11,833,162 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:21146513) MGI PMID:21146513 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:10421635) MGI PMID:10421635 NCBI chrNW_004955485:8,517,412...8,521,732
Ensembl chrNW_004955485:8,517,412...8,521,770 		JBrowse link
cell-cell adhesion involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO (PMID:21069829) MGI PMID:21069829 NCBI chrNW_004955476:11,827,004...11,833,495
Ensembl chrNW_004955476:11,827,004...11,833,162 		JBrowse link
chordate embryonic development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1 DNA repair associated acts_upstream_of_or_within ISO (PMID:9171368) MGI PMID:9171368 NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528 		JBrowse link
G Brca2 BRCA2 DNA repair associated acts_upstream_of_or_within ISO (PMID:9171368) MGI PMID:9171368 NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432 		JBrowse link
G Cenpu centromere protein U acts_upstream_of_or_within ISO (PMID:23724000) MGI PMID:23724000 NCBI chrNW_004955403:24,245,197...24,278,631
Ensembl chrNW_004955403:24,245,185...24,279,734 		JBrowse link
G Fas Fas cell surface death receptor ISO RGD PMID:11331665 RGD:8686426 NCBI chrNW_004955425:3,961,671...3,987,513
Ensembl chrNW_004955425:3,961,013...3,987,455 		JBrowse link
G Lims1 LIM zinc finger domain containing 1 acts_upstream_of_or_within ISO (PMID:15798193) MGI PMID:15798193 NCBI chrNW_004955470:12,142,997...12,158,273 JBrowse link
G Trip6 thyroid hormone receptor interactor 6 involved_in ISO (MGI:5509005|PMID:10826496) UniProt PMID:10826496 MGI:5509005 NCBI chrNW_004955573:102,649...107,047
Ensembl chrNW_004955573:102,639...107,047 		JBrowse link
G Vezt vezatin, adherens junctions transmembrane protein acts_upstream_of_or_within ISO (PMID:16199027) MGI PMID:16199027 NCBI chrNW_004955405:31,801,946...31,869,588
Ensembl chrNW_004955405:31,801,979...31,867,693 		JBrowse link
chorio-allantoic fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in ISO (MGI:1332253|PMID:10079236)
(PMID:10079236)		 BHF-UCL PMID:10079236 MGI:1332253 NCBI chrNW_004955411:450,674...557,213
Ensembl chrNW_004955411:450,674...558,650 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chrNW_004955445:2,154,057...2,235,594
Ensembl chrNW_004955445:2,153,170...2,235,795 		JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:12446788) MGI PMID:12446788 NCBI chrNW_004955423:8,416,498...8,419,029
Ensembl chrNW_004955423:8,413,725...8,419,166 		JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO (PMID:10021343) MGI PMID:10021343 NCBI chrNW_004955579:240,058...298,592
Ensembl chrNW_004955579:240,058...298,592 		JBrowse link
G Erf ETS2 repressor factor acts_upstream_of_or_within ISO (PMID:17502352) MGI PMID:17502352 NCBI chrNW_004955555:654,945...661,097
Ensembl chrNW_004955555:654,414...665,277 		JBrowse link
G Itga4 integrin subunit alpha 4 acts_upstream_of_or_within ISO (PMID:7539359) MGI PMID:7539359 NCBI chrNW_004955403:15,726,296...15,807,055
Ensembl chrNW_004955403:15,723,785...15,807,111 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:10090727) MGI PMID:10090727 NCBI chrNW_004955496:1,728,840...1,827,749
Ensembl chrNW_004955496:1,728,840...1,828,698 		JBrowse link
G Vcam1 vascular cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:7530222)
(PMID:7539357)		 MGI PMID:7530222 PMID:7539357 NCBI chrNW_004955435:5,390,745...5,410,025
Ensembl chrNW_004955435:5,390,751...5,411,691 		JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO (PMID:11543617) MGI PMID:11543617 NCBI chrNW_004955413:30,146,185...30,185,693
Ensembl chrNW_004955413:30,144,869...30,181,791 		JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 acts_upstream_of_or_within ISO (PMID:15226444) MGI PMID:15226444 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in ISO (MGI:3719969|PMID:17609112)
(PMID:17609112)		 UniProt PMID:17609112 MGI:3719969 NCBI chrNW_004955452:7,505,647...7,593,302
Ensembl chrNW_004955452:7,532,966...7,596,546 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004955487:2,678,961...2,680,869
Ensembl chrNW_004955487:2,679,145...2,680,521 		JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO (PMID:18606138) MGI PMID:18606138 NCBI chrNW_004955417:27,520,420...27,525,907 JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO (PMID:16116426) MGI PMID:16116426 NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO (PMID:19008950)
(PMID:16116426)		 MGI PMID:16116426 PMID:19008950 NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (PMID:19008950) MGI PMID:19008950 NCBI chrNW_004955420:23,291,650...23,301,695
Ensembl chrNW_004955420:23,293,222...23,301,694 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:10072433) MGI PMID:10072433 NCBI chrNW_004955444:8,336,071...8,655,041
Ensembl chrNW_004955444:8,495,530...8,655,100 		JBrowse link
G Frzb frizzled related protein acts_upstream_of_or_within ISO (PMID:17433286) MGI PMID:17433286 NCBI chrNW_004955403:14,598,765...14,627,997
Ensembl chrNW_004955403:14,598,765...14,631,154 		JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within ISO (PMID:20940229) MGI PMID:20940229 NCBI chrNW_004955451:17,501,410...17,503,726 JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:17395647) MGI PMID:17395647 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within ISO (PMID:20643356) MGI PMID:20643356 NCBI chrNW_004955452:4,125,792...4,159,699
Ensembl chrNW_004955452:4,128,269...4,160,683 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chrNW_004955410:28,788,245...28,790,971
Ensembl chrNW_004955410:28,787,817...28,790,962 		JBrowse link
G Hpn hepsin involved_in ISO (MGI:5306554|PMID:20683358) UniProt PMID:20683358 MGI:5306554 NCBI chrNW_004955468:4,384,630...4,399,881
Ensembl chrNW_004955468:4,384,630...4,400,379 		JBrowse link
G Myo3a myosin IIIA involved_in ISO (MGI:5766107|PMID:26754646) UniProt PMID:26754646 MGI:5766107 NCBI chrNW_004955429:3,172,457...3,358,688
Ensembl chrNW_004955429:3,172,996...3,358,688 		JBrowse link
G Myo3b myosin IIIB involved_in ISO (MGI:5766107|PMID:26754646)
(PMID:26754646)		 UniProt PMID:26754646 MGI:5766107 NCBI chrNW_004955449:4,128,816...4,546,651
Ensembl chrNW_004955449:4,129,823...4,546,296 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004955408:30,693,893...30,695,453
Ensembl chrNW_004955408:30,694,496...30,695,221 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:4822275|PMID:20727173)
(PMID:16916509)
(MGI:84247|PMID:8951055)		 UniProt
MGI
DFLAT		 PMID:8951055 PMID:16916509 PMID:20727173 MGI:4822275 MGI:84247 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
G Pou3f4 POU class 3 homeobox 4 involved_in ISO (MGI:5284768|PMID:18231833) UniProt PMID:18231833 MGI:5284768 NCBI chrNW_004955529:2,726,121...2,727,311
Ensembl chrNW_004955529:2,726,133...2,727,218 		JBrowse link
G Ptk7 protein tyrosine kinase 7 (inactive) acts_upstream_of_or_within ISO (PMID:20704721) MGI PMID:20704721 NCBI chrNW_004955437:9,037,933...9,094,237
Ensembl chrNW_004955437:9,037,661...9,094,287 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO (PMID:12874121) MGI PMID:12874121 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:20346939) MGI PMID:20346939 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5284768|PMID:18231833)
(PMID:18231833)
(PMID:17825816)		 UniProt
MGI		 PMID:17825816 PMID:18231833 MGI:5284768 NCBI chrNW_004955442:18,320,674...18,327,062
Ensembl chrNW_004955442:18,319,762...18,325,337 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:18353863) MGI PMID:18353863 NCBI chrNW_004955411:12,194,560...12,232,374
Ensembl chrNW_004955411:12,194,550...12,232,374 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:6710296|PMID:33795231) UniProt PMID:33795231 MGI:6710296 NCBI chrNW_004955451:2,458,612...2,466,264
Ensembl chrNW_004955451:2,457,568...2,466,639 		JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within ISO (PMID:10575115) MGI PMID:10575115 NCBI chrNW_004955438:4,601,765...4,758,922
Ensembl chrNW_004955438:4,614,584...4,761,582 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:17433286)
(PMID:20643356)
(PMID:20940229)
(PMID:16116426), (PMID:18606138)
(PMID:19008950)		 MGI PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:17433286) MGI PMID:17433286 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:21980308) MGI PMID:21980308 NCBI chrNW_004955429:23,011,627...23,198,188
Ensembl chrNW_004955429:23,010,790...23,198,250 		JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chrNW_004955501:5,799,879...5,837,022
Ensembl chrNW_004955501:5,799,879...5,837,022 		JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO (PMID:16571627) MGI PMID:16571627 NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO (PMID:16571627) MGI PMID:16571627 NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:16571627)
(PMID:16571627), (PMID:17229766)		 MGI PMID:16571627 PMID:17229766 NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:15218525) MGI PMID:15218525 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO (PMID:18590716)
(PMID:18003640)		 MGI PMID:18003640 PMID:18590716 NCBI chrNW_004955524:3,037,825...3,044,296
Ensembl chrNW_004955524:3,036,953...3,044,296 		JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within ISO (PMID:23383217) MGI PMID:23383217 NCBI chrNW_004955409:23,598,127...23,599,827
Ensembl chrNW_004955409:23,598,127...23,599,461 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:23383217)
(PMID:18590716)
(PMID:9226455)		 MGI PMID:9226455 PMID:18590716 PMID:23383217 NCBI chrNW_004955415:29,982,940...29,987,093
Ensembl chrNW_004955415:29,982,940...29,986,255 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504941)
(PMID:17504940), (PMID:17504941)		 MGI PMID:17504940 PMID:17504941 NCBI chrNW_004955432:727,784...729,096 JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:18590716), (PMID:19286674)
(PMID:9247260)		 MGI PMID:9247260 PMID:18590716 PMID:19286674 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO (PMID:9226455) MGI PMID:9226455 NCBI chrNW_004955438:17,653,149...17,655,091
Ensembl chrNW_004955438:17,653,271...17,656,878 		JBrowse link
G Kif3a kinesin family member 3A involved_in
acts_upstream_of_or_within		 ISO (MGI:4888042|PMID:21209331)
(PMID:18590716)
(PMID:18590716), (PMID:19286674)		 BHF-UCL
MGI		 PMID:18590716 PMID:19286674 PMID:21209331 MGI:4888042 NCBI chrNW_004955408:4,072,823...4,115,975
Ensembl chrNW_004955408:4,069,639...4,115,998 		JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004955579:51,862...74,985 JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004955527:474,450...573,869
Ensembl chrNW_004955527:474,403...574,689 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004955406:5,727,367...5,748,798
Ensembl chrNW_004955406:5,727,367...5,752,234 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:9262482) MGI PMID:9262482 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (MGI:69552|PMID:7720556)
(PMID:7720556)		 UniProt PMID:7720556 MGI:69552 NCBI chrNW_004955502:2,947,170...2,980,634
Ensembl chrNW_004955502:2,950,562...2,980,634 		JBrowse link
G Rnf220 ring finger protein 220 acts_upstream_of_or_within ISO (PMID:30177510) MGI PMID:30177510 NCBI chrNW_004955464:13,579,828...13,795,266
Ensembl chrNW_004955464:13,580,742...13,801,837 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISO (MGI:4888042|PMID:21209331)
(PMID:17442700), (PMID:18590716)
(PMID:17504941)		 BHF-UCL
MGI		 PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 MGI:4888042 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO (PMID:16357211) MGI PMID:16357211 NCBI chrNW_004955482:7,504,554...7,533,605
Ensembl chrNW_004955482:7,504,532...7,528,542 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:8299937) MGI PMID:8299937 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541 		JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO (PMID:10932191) MGI PMID:10932191 NCBI chrNW_004955444:17,859,999...18,067,623
Ensembl chrNW_004955444:17,858,771...18,067,248 		JBrowse link
G Gjb6 gap junction protein beta 6 acts_upstream_of_or_within ISO (PMID:12490528) MGI PMID:12490528 NCBI chrNW_004955497:1,018,610...1,027,593
Ensembl chrNW_004955497:1,018,610...1,027,360 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:8291537) BHF-UCL PMID:8291537 NCBI chrNW_004955426:21,666,958...21,841,515
Ensembl chrNW_004955426:21,666,857...21,841,515 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15190012) MGI PMID:15190012 NCBI chrNW_004955442:18,320,674...18,327,062
Ensembl chrNW_004955442:18,319,762...18,325,337 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004955443:8,053,847...8,122,918
Ensembl chrNW_004955443:8,053,847...8,123,110 		JBrowse link
ectoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chrNW_004955415:29,982,940...29,987,093
Ensembl chrNW_004955415:29,982,940...29,986,255 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elf5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO (PMID:25446535) MGI PMID:25446535 NCBI chrNW_004955422:11,751,073...11,779,313
Ensembl chrNW_004955422:11,750,774...11,780,310 		JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO (PMID:25446535) MGI PMID:25446535 NCBI chrNW_004955407:37,747,152...37,764,170
Ensembl chrNW_004955407:37,747,000...37,765,237 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100 NCBI chrNW_004955583:995,707...1,003,202 JBrowse link
embryo development ending in birth or egg hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akirin2 akirin 2 involved_in ISO (MGI:3771766|PMID:18066067)
(PMID:18066067)		 UniProt PMID:18066067 MGI:3771766 NCBI chrNW_004955411:14,600,106...14,619,374
Ensembl chrNW_004955411:14,600,106...14,619,069 		JBrowse link
G Camsap3 calmodulin regulated spectrin associated protein family member 3 involved_in ISO (MGI:6094483|PMID:28860385) UniProt PMID:28860385 MGI:6094483 NCBI chrNW_004955563:1,639,369...1,648,826
Ensembl chrNW_004955563:1,639,600...1,648,818 		JBrowse link
G Cdk5r1 cyclin dependent kinase 5 regulatory subunit 1 involved_in ISO PMID:11276227 UniProt PMID:11276227 RGD:8554712 NCBI chrNW_004955481:7,408,089...7,411,813
Ensembl chrNW_004955481:7,408,205...7,409,128 		JBrowse link
G Evx1 even-skipped homeobox 1 acts_upstream_of_or_within ISO (PMID:7958869) MGI PMID:7958869 NCBI chrNW_004955410:28,939,416...28,942,751
Ensembl chrNW_004955410:28,939,416...28,942,751 		JBrowse link
G Fgf2 fibroblast growth factor 2 ISO RGD PMID:19476451 RGD:2315829 NCBI chrNW_004955428:17,840,554...17,894,779
Ensembl chrNW_004955428:17,840,628...17,894,773 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:14623825) MGI PMID:14623825 NCBI chrNW_004955485:8,517,412...8,521,732
Ensembl chrNW_004955485:8,517,412...8,521,770 		JBrowse link
G Fxn frataxin acts_upstream_of_or_within ISO (PMID:10767347) MGI PMID:10767347 NCBI chrNW_004955434:3,983,225...4,008,324
Ensembl chrNW_004955434:3,980,653...4,008,761 		JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in ISO (MGI:3582004|PMID:15919177)
(PMID:15919177)		 UniProt PMID:15919177 MGI:3582004 NCBI chrNW_004955456:5,465,180...5,476,380
Ensembl chrNW_004955456:5,465,182...5,474,303 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO (MGI:2149941|PMID:11520675) UniProt PMID:11520675 MGI:2149941 NCBI chrNW_004955417:14,502,450...14,510,015
Ensembl chrNW_004955417:14,502,451...14,510,160 		JBrowse link
G Rictor RPTOR independent companion of MTOR complex 2 involved_in ISO (MGI:3702793|PMID:16962829) UniProt PMID:16962829 MGI:3702793 NCBI chrNW_004955426:23,468,112...23,582,587
Ensembl chrNW_004955426:23,468,112...23,582,587 		JBrowse link
G Scel sciellin involved_in ISO (MGI:1928154|PMID:11112355) UniProt PMID:11112355 MGI:1928154 NCBI chrNW_004955404:29,619,710...29,727,873
Ensembl chrNW_004955404:29,620,693...29,728,006 		JBrowse link
G Sebox SEBOX homeobox acts_upstream_of_or_within ISO (PMID:18753614) MGI PMID:18753614 NCBI chrNW_004955481:4,768,121...4,770,611
Ensembl chrNW_004955481:4,769,063...4,769,953 		JBrowse link
G Stox2 storkhead box 2 involved_in ISO (PMID:20643876) UniProt PMID:20643876 NCBI chrNW_004955403:24,871,867...25,106,267
Ensembl chrNW_004955403:24,878,118...24,980,659 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:16702401) MGI PMID:16702401 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928 		JBrowse link
G Tp53bp2 tumor protein p53 binding protein 2 acts_upstream_of_or_within ISO (PMID:16702401) MGI PMID:16702401 NCBI chrNW_004955520:1,254,853...1,285,118
Ensembl chrNW_004955520:1,257,216...1,285,322 		JBrowse link
G Ubr3 ubiquitin protein ligase E3 component n-recognin 3 involved_in ISO (MGI:3718176|PMID:17462990)
(PMID:17462990)		 UniProt PMID:17462990 MGI:3718176 NCBI chrNW_004955449:4,583,114...4,773,474
Ensembl chrNW_004955449:4,585,494...4,773,413 		JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:11118896) MGI PMID:11118896 NCBI chrNW_004955420:23,111,690...23,120,038
Ensembl chrNW_004955420:23,112,093...23,120,036 		JBrowse link
G Chrdl1 chordin like 1 involved_in ISO (PMID:11118896), (PMID:11401399) MGI PMID:11118896 PMID:11401399 NCBI chrNW_004955490:5,108,308...5,218,679
Ensembl chrNW_004955490:5,108,308...5,257,445 		JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chrNW_004955475:11,722,514...11,725,067 JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:9230313) MGI PMID:9230313 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Frat1 FRAT regulator of WNT signaling pathway 1 acts_upstream_of_or_within ISO (PMID:10534617) MGI PMID:10534617 NCBI chrNW_004955507:3,472,035...3,486,868 JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:12121999) BHF-UCL PMID:12121999 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918 		JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004955464:11,213,265...11,288,648
Ensembl chrNW_004955464:11,228,667...11,289,648 		JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO (MGI:4822553|PMID:2534596)
(PMID:2534596)		 BHF-UCL PMID:2534596 MGI:4822553 NCBI chrNW_004955500:7,797,063...7,811,142
Ensembl chrNW_004955500:7,797,060...7,811,167 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) BHF-UCL PMID:16826533 NCBI chrNW_004955429:12,647,993...12,693,998
Ensembl chrNW_004955429:12,647,993...12,694,895 		JBrowse link
embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (PMID:16647303)
(PMID:16647304)		 MGI PMID:16647303 PMID:16647304 NCBI chrNW_004955412:27,004,391...27,093,968
Ensembl chrNW_004955412:27,003,919...27,065,989 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in ISO (MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618) UniProt PMID:19767740 PMID:21935430 PMID:23806618 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chrNW_004955559:1,112,670...1,117,620
Ensembl chrNW_004955559:1,112,855...1,117,413 		JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chrNW_004955524:2,439,594...2,506,539
Ensembl chrNW_004955524:2,439,594...2,506,538 		JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist involved_in ISO (MGI:5543884|PMID:23850456) UniProt PMID:23850456 MGI:5543884 NCBI chrNW_004955406:11,245,960...11,343,677
Ensembl chrNW_004955406:11,245,960...11,343,677 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G Mab21l2 mab-21 like 2 acts_upstream_of_or_within ISO (PMID:15385160) MGI PMID:15385160 NCBI chrNW_004955471:5,296,292...5,298,432
Ensembl chrNW_004955471:5,297,259...5,298,338 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004955403:14,476,689...14,554,380
Ensembl chrNW_004955403:14,480,162...14,554,702 		JBrowse link
G Ofd1 OFD1 centriole and centriolar satellite protein involved_in ISO (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chrNW_004955519:4,433,747...4,470,842
Ensembl chrNW_004955519:4,433,855...4,471,070 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:15013802) MGI PMID:15013802 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
G Znf281 zinc finger protein 281 involved_in ISO (MGI:5448369|PMID:21915945)
(PMID:21915945)		 UniProt PMID:21915945 MGI:5448369 NCBI chrNW_004955406:36,592,771...36,599,543
Ensembl chrNW_004955406:36,592,771...36,599,543 		JBrowse link
embryonic brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO RGD PMID:19819228 RGD:11537397 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO (PMID:24947469) MGI PMID:24947469 NCBI chrNW_004955480:8,404,239...8,514,792
Ensembl chrNW_004955480:8,400,284...8,514,736 		JBrowse link
G Cdc40 cell division cycle 40 involved_in ISO (PMID:33220177) UniProt PMID:33220177 NCBI chrNW_004955411:34,966,797...35,007,577
Ensembl chrNW_004955411:34,966,339...35,007,558 		JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:32879327) MGI PMID:32879327 NCBI chrNW_004955491:1,983,002...3,982,510
Ensembl chrNW_004955491:1,984,050...3,981,830 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in ISO (MGI:1931800|PMID:11262227)
(PMID:11262227)		 ParkinsonsUK-UCL PMID:11262227 MGI:1931800 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G En1 engrailed homeobox 1 involved_in ISO (MGI:75252|PMID:7624797)
(PMID:7624797)		 ParkinsonsUK-UCL PMID:7624797 MGI:75252 NCBI chrNW_004955459:10,839,581...10,844,198 JBrowse link
G En2 engrailed homeobox 2 involved_in ISO (MGI:75252|PMID:7624797) ParkinsonsUK-UCL PMID:7624797 MGI:75252 NCBI chrNW_004955491:8,422,295...8,427,038 JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20589884) MGI PMID:20589884 NCBI chrNW_004955475:10,687,168...10,710,286
Ensembl chrNW_004955475:10,687,367...10,710,053 		JBrowse link
G Megf8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (PMID:32203821) MGI PMID:32203821 NCBI chrNW_004955555:549,921...591,978
Ensembl chrNW_004955555:548,416...591,978 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid NOT|involved_in ISO (MGI:6196220|PMID:30074985)
(PMID:30074985)		 ARUK-UCL PMID:30074985 MGI:6196220 NCBI chrNW_004955452:17,430,850...17,443,830
Ensembl chrNW_004955452:17,430,219...17,443,830 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:23454480) MGI PMID:23454480 NCBI chrNW_004955451:4,805,542...4,818,233
Ensembl chrNW_004955451:4,804,838...4,821,556 		JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (PMID:25220058) MGI PMID:25220058 NCBI chrNW_004955407:42,735,078...42,835,851
Ensembl chrNW_004955407:42,735,188...42,835,465 		JBrowse link
G Phf10 PHD finger protein 10 ISO RGD PMID:24056535 RGD:9588230 NCBI chrNW_004955411:3,911,966...3,926,995
Ensembl chrNW_004955411:3,911,791...3,930,912 		JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 involved_in ISO (PMID:33220177) UniProt PMID:33220177 NCBI chrNW_004955437:6,131,013...6,143,474
Ensembl chrNW_004955437:6,131,013...6,143,529 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:17868671) MGI PMID:17868671 NCBI chrNW_004955500:1,897,899...1,990,791
Ensembl chrNW_004955500:1,897,912...1,990,875 		JBrowse link
G Prickle2 prickle planar cell polarity protein 2 involved_in ISO (PMID:17868671) MGI PMID:17868671 NCBI chrNW_004955517:1,501,322...1,806,996
Ensembl chrNW_004955517:1,501,706...1,802,169 		JBrowse link
G Rnf112 ring finger protein 112 involved_in ISO (MGI:6154439|PMID:26951452)
(PMID:26951452)		 UniProt PMID:26951452 MGI:6154439 NCBI chrNW_004955467:349,703...355,922
Ensembl chrNW_004955467:349,256...355,922 		JBrowse link
G Rpl10 ribosomal protein L10 involved_in ISO (PMID:25316788) UniProt PMID:25316788 NCBI chrNW_004955580:903,618...906,439
Ensembl chrNW_004955580:903,412...906,439 		JBrowse link
G Slc6a8 solute carrier family 6 member 8 ISO RGD PMID:15918910 RGD:1599815 NCBI chrNW_004955580:419,696...426,727 JBrowse link
G Tbc1d23 TBC1 domain family member 23 involved_in ISO (MGI:6094290|PMID:28823707) UniProt PMID:28823707 MGI:6094290 NCBI chrNW_004955427:1,811,132...1,849,348
Ensembl chrNW_004955427:1,810,096...1,852,828 		JBrowse link
G Tmem94 transmembrane protein 94 acts_upstream_of_or_within ISO (PMID:30526868) MGI PMID:30526868 NCBI chrNW_004955553:2,305,425...2,353,596
Ensembl chrNW_004955553:2,329,995...2,352,898 		JBrowse link
G Tra2b transformer 2 beta homolog acts_upstream_of_or_within ISO (PMID:22194695) MGI PMID:22194695 NCBI chrNW_004955420:21,707,618...21,728,186
Ensembl chrNW_004955420:21,707,618...21,728,186 		JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (PMID:21548880) MGI PMID:21548880 NCBI chrNW_004955416:9,412,297...9,518,561
Ensembl chrNW_004955416:9,412,297...9,559,655 		JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO (MGI:3045659|PMID:15121182)
(PMID:15121182)		 ParkinsonsUK-UCL PMID:15121182 MGI:3045659 NCBI chrNW_004955500:7,797,063...7,811,142
Ensembl chrNW_004955500:7,797,060...7,811,167 		JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:17184764) MGI PMID:17184764 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within		 ISO (MGI:3042765|PMID:14623956)
(PMID:17184764)		 UniProt
MGI		 PMID:14623956 PMID:17184764 MGI:3042765 NCBI chrNW_004955416:27,823,611...27,858,112
Ensembl chrNW_004955416:27,823,611...27,858,173 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:15958512) MGI PMID:15958512 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO (PMID:18791178) MGI PMID:18791178 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:10498698)
(PMID:10572050)		 MGI PMID:10498698 PMID:10572050 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
G Ppp1r13l protein phosphatase 1 regulatory subunit 13 like acts_upstream_of_or_within ISO (PMID:15661756) MGI PMID:15661756 NCBI chrNW_004955555:2,373,088...2,390,973
Ensembl chrNW_004955555:2,372,259...2,389,626 		JBrowse link
G Rara retinoic acid receptor alpha acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chrNW_004955451:14,876,663...14,917,134
Ensembl chrNW_004955451:14,897,726...14,917,134 		JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chrNW_004955458:480,257...501,172
Ensembl chrNW_004955458:480,070...501,356 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004955444:6,878,722...6,909,421
Ensembl chrNW_004955444:6,878,722...6,909,421 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004955542:2,264,472...2,301,083
Ensembl chrNW_004955542:2,265,901...2,301,215 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004955443:8,053,847...8,122,918
Ensembl chrNW_004955443:8,053,847...8,123,110 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chrNW_004955410:22,003,981...22,005,483 JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:10049573) MGI PMID:10049573 NCBI chrNW_004955445:2,154,057...2,235,594
Ensembl chrNW_004955445:2,153,170...2,235,795 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:18653562) MGI PMID:18653562 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677 		JBrowse link
G Cryaa crystallin alpha A acts_upstream_of_or_within ISO (PMID:18056999) MGI PMID:18056999 NCBI chrNW_004955407:38,880,088...38,892,946
Ensembl chrNW_004955407:38,880,086...38,925,642 		JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (MGI:5297296|PMID:22022403) BHF-UCL PMID:22022403 MGI:5297296 NCBI chrNW_004955465:11,740,374...11,744,619
Ensembl chrNW_004955465:11,740,323...11,744,619 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (MGI:3826935|PMID:18832390)
(PMID:18832390)		 CACAO PMID:18832390 MGI:3826935 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985)
(PMID:20579985)		 DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955435:17,201,866...17,257,371
Ensembl chrNW_004955435:17,172,651...17,257,371 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955494:3,365,826...3,554,735
Ensembl chrNW_004955494:3,393,049...3,554,844 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:28778798) MGI PMID:28778798 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:28778798) MGI PMID:28778798 NCBI chrNW_004955469:9,418,599...9,455,026
Ensembl chrNW_004955469:9,418,609...9,455,026 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:18582859) MGI PMID:18582859 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chrNW_004955482:6,774,021...6,885,113
Ensembl chrNW_004955482:6,774,059...6,887,171 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18985738)
(PMID:19653321)		 MGI PMID:18985738 PMID:19653321 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO (PMID:18653562) MGI PMID:18653562 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162 		JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004955458:644,435...677,360
Ensembl chrNW_004955458:644,378...677,441 		JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004955449:1,347,781...1,404,368 JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3487212|PMID:15459098)
(PMID:15459098)		 BHF-UCL PMID:15459098 MGI:3487212 NCBI chrNW_004955451:2,458,612...2,466,264
Ensembl chrNW_004955451:2,457,568...2,466,639 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:9811866) MGI PMID:9811866 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (MGI:3617102|PMID:16445854)
(PMID:16445854)		 BHF-UCL PMID:16445854 MGI:3617102 NCBI chrNW_004955422:13,943,590...13,951,102
Ensembl chrNW_004955422:13,943,552...13,951,137 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:18436818) MGI PMID:18436818 NCBI chrNW_004955429:23,011,627...23,198,188
Ensembl chrNW_004955429:23,010,790...23,198,250 		JBrowse link
embryonic cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aatf apoptosis antagonizing transcription factor acts_upstream_of ISO (PMID:11071758) MGI PMID:11071758 NCBI chrNW_004955451:929,278...1,033,665
Ensembl chrNW_004955451:929,510...1,033,492 		JBrowse link
G Cul3 cullin 3 involved_in ISO (MGI:5312166|PMID:22358839)
(PMID:22358839)		 UniProt PMID:22358839 MGI:5312166 NCBI chrNW_004955453:9,546,554...9,629,976
Ensembl chrNW_004955453:9,564,522...9,629,976 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:9426063) MGI PMID:9426063 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599 		JBrowse link
G Gdf9 growth differentiation factor 9 involved_in ISO (PMID:24313324) AgBase PMID:24313324 NCBI chrNW_004955408:4,234,208...4,239,795 JBrowse link
G Padi6 peptidyl arginine deiminase 6 involved_in ISO (MGI:6508663|PMID:16137333)
(PMID:16137333)		 UniProt PMID:16137333 MGI:6508663 NCBI chrNW_004955527:1,515,796...1,531,420
Ensembl chrNW_004955527:1,516,019...1,531,420 		JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta acts_upstream_of_or_within ISO (PMID:11919689) MGI PMID:11919689 NCBI chrNW_004955501:251,829...381,255
Ensembl chrNW_004955501:259,645...379,909 		JBrowse link
G Rhoa ras homolog family member A involved_in ISO (PMID:25485583) AgBase PMID:25485583 NCBI chrNW_004955532:1,300,821...1,347,453
Ensembl chrNW_004955532:1,300,462...1,347,451 		JBrowse link
G Top1 DNA topoisomerase I acts_upstream_of_or_within ISO (PMID:8943335) MGI PMID:8943335 NCBI chrNW_004955445:15,834,017...15,922,785
Ensembl chrNW_004955445:15,834,017...15,922,785 		JBrowse link
G Top2a DNA topoisomerase II alpha acts_upstream_of_or_within ISO (PMID:11835580) MGI PMID:11835580 NCBI chrNW_004955451:14,928,273...14,964,855
Ensembl chrNW_004955451:14,929,136...14,964,723 		JBrowse link
G Tpra1 transmembrane protein adipocyte associated 1 acts_upstream_of_or_within ISO (PMID:18459117) MGI PMID:18459117 NCBI chrNW_004955429:16,032,247...16,041,793
Ensembl chrNW_004955429:16,032,409...16,042,177 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Cdh11 cadherin 11 acts_upstream_of_or_within ISO (PMID:17143286) MGI PMID:17143286 NCBI chrNW_004955433:21,613,909...21,770,968
Ensembl chrNW_004955433:21,612,297...21,687,281 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:7590232) MGI PMID:7590232 NCBI chrNW_004955449:2,907,502...2,909,893
Ensembl chrNW_004955449:2,907,436...2,910,816 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:24360810) UniProt PMID:24360810 NCBI chrNW_004955506:2,749,534...2,760,873
Ensembl chrNW_004955506:2,749,534...2,760,873 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (PMID:7874170), (PMID:7987400) BHF-UCL PMID:7874170 PMID:7987400 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17525797) MGI PMID:17525797 NCBI chrNW_004955432:727,784...729,096 JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21377456) MGI PMID:21377456 NCBI chrNW_004955417:26,401,337...26,533,297
Ensembl chrNW_004955417:26,401,363...26,533,297 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484 		JBrowse link
G Irx5 iroquois homeobox 5 involved_in ISO (PMID:22581230) UniProt PMID:22581230 NCBI chrNW_004955433:12,518,786...12,522,744
Ensembl chrNW_004955433:12,519,338...12,522,118 		JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO (PMID:18022611) MGI PMID:18022611 NCBI chrNW_004955409:37,438,924...37,448,704
Ensembl chrNW_004955409:37,440,541...37,448,437 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within ISO (PMID:18022611) MGI PMID:18022611 NCBI chrNW_004955417:5,298,334...5,545,121
Ensembl chrNW_004955417:5,303,290...5,545,589 		JBrowse link
G Nipbl NIPBL cohesin loading factor acts_upstream_of_or_within ISO (PMID:19763162) MGI PMID:19763162 NCBI chrNW_004955426:21,666,958...21,841,515
Ensembl chrNW_004955426:21,666,857...21,841,515 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within ISO (PMID:23349049) MGI PMID:23349049 NCBI chrNW_004955419:29,395,631...29,577,272
Ensembl chrNW_004955419:29,395,389...29,570,952 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISO (MGI:894516|PMID:9226440)
(PMID:9226440)		 UniProt PMID:9226440 MGI:894516 NCBI chrNW_004955447:16,570,652...16,613,410
Ensembl chrNW_004955447:16,569,909...16,612,373 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO (PMID:7758948)
(PMID:9729491)		 MGI PMID:7758948 PMID:9729491 NCBI chrNW_004955462:6,919,905...6,991,733
Ensembl chrNW_004955462:6,919,899...6,991,733 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chrNW_004955437:10,598,145...10,885,858
Ensembl chrNW_004955437:10,598,145...10,800,560 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:20133625) MGI PMID:20133625 NCBI chrNW_004955420:25,070,626...25,178,410
Ensembl chrNW_004955420:25,090,798...25,177,760 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO (PMID:20515681) MGI PMID:20515681 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO (PMID:20515681) MGI PMID:20515681 NCBI chrNW_004955441:12,029,530...12,033,214
Ensembl chrNW_004955441:12,029,480...12,033,214 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO (PMID:20515681) MGI PMID:20515681 NCBI chrNW_004955466:8,902,728...8,915,685
Ensembl chrNW_004955466:8,902,517...8,915,723 		JBrowse link
G Slc39a1 solute carrier family 39 member 1 acts_upstream_of_or_within ISO (PMID:16652366) MGI PMID:16652366 NCBI chrNW_004955545:556,210...559,732
Ensembl chrNW_004955545:554,947...560,336 		JBrowse link
G Slc39a3 solute carrier family 39 member 3 acts_upstream_of_or_within ISO (PMID:16652366) MGI PMID:16652366 NCBI chrNW_004955899:808...9,721
Ensembl chrNW_004955899:590...9,721 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004955402:33,131,760...33,217,144
Ensembl chrNW_004955402:33,136,778...33,216,844 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15190012) MGI PMID:15190012 NCBI chrNW_004955442:18,320,674...18,327,062
Ensembl chrNW_004955442:18,319,762...18,325,337 		JBrowse link
G Tbx15 T-box transcription factor 15 acts_upstream_of_or_within ISO (PMID:15728667) MGI PMID:15728667 NCBI chrNW_004955435:21,874,154...21,993,510
Ensembl chrNW_004955435:21,872,201...21,993,772 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in
acts_upstream_of_or_within		 ISO (MGI:80519|PMID:8622766)
(PMID:8622766)
(PMID:8622765)		 UniProt
MGI		 PMID:8622765 PMID:8622766 MGI:80519 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:16806156) MGI PMID:16806156 NCBI chrNW_004955419:26,490,899...26,546,349
Ensembl chrNW_004955419:26,490,899...26,547,017 		JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in ISO (MGI:2678274|PMID:12975342) BHF-UCL PMID:12975342 MGI:2678274 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:8988166), (PMID:8988167)
(PMID:8988167)
(PMID:15030764)
(MGI:1100098|PMID:8988167)		 BHF-UCL
MGI		 PMID:8988166 PMID:8988167 PMID:15030764 MGI:1100098 NCBI chrNW_004955410:22,003,981...22,005,483 JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chrNW_004955542:1,959,765...2,000,665
Ensembl chrNW_004955542:1,959,765...2,000,665 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004955443:8,053,847...8,122,918
Ensembl chrNW_004955443:8,053,847...8,123,110 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:16998816)
(PMID:16054034)		 MGI PMID:16054034 PMID:16998816 NCBI chrNW_004955478:10,816,405...10,841,416
Ensembl chrNW_004955478:10,816,405...10,841,416 		JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:7670465) MGI PMID:7670465 NCBI chrNW_004955445:12,696,096...12,717,488
Ensembl chrNW_004955445:12,696,096...12,717,488 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:16806149) MGI PMID:16806149 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180 		JBrowse link
G Cxcl8 C-X-C motif chemokine ligand 8 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004955474:247,326...250,355
Ensembl chrNW_004955474:241,501...250,643 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:16308329) MGI PMID:16308329 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO (PMID:16308329) MGI PMID:16308329 NCBI chrNW_004955497:2,199,424...2,232,088
Ensembl chrNW_004955497:2,199,409...2,235,893 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004955465:11,740,374...11,744,619
Ensembl chrNW_004955465:11,740,323...11,744,619 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:10693670) MGI PMID:10693670 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:10693670) MGI PMID:10693670 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (PMID:10523863) MGI PMID:10523863 NCBI chrNW_004955439:1,523,516...1,560,185
Ensembl chrNW_004955439:1,521,292...1,560,220 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639)
(MGI:3795695|PMID:18519639)		 BHF-UCL PMID:18519639 MGI:3795695 NCBI chrNW_004955512:2,914,834...3,333,440
Ensembl chrNW_004955512:2,917,243...3,333,688 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in ISO (MGI:3813934|PMID:19097194) UniProt PMID:19097194 MGI:3813934 NCBI chrNW_004955441:9,462,530...9,471,446
Ensembl chrNW_004955441:9,462,530...9,471,446 		JBrowse link
G Rarb retinoic acid receptor beta involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chrNW_004955430:17,067,536...17,457,558
Ensembl chrNW_004955430:17,295,174...17,460,045 		JBrowse link
G Rarres2 retinoic acid receptor responder 2 involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chrNW_004955491:4,954,809...4,957,724
Ensembl chrNW_004955491:4,955,068...4,956,956 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (PMID:18280297) UniProt PMID:18280297 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171 		JBrowse link
G Sct secretin ISO RGD PMID:1711228 RGD:729899 NCBI chrNW_004955476:11,433,857...11,434,662
Ensembl chrNW_004955476:11,433,969...11,434,574 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600 		JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248 		JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700 		JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:16618415)
(PMID:15017552)		 MGI PMID:15017552 PMID:16618415 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:16618415), (PMID:21492869)
(PMID:21550054)		 MGI PMID:16618415 PMID:21492869 PMID:21550054 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:16127717) MGI PMID:16127717 NCBI chrNW_004955403:52,958,318...53,029,267
Ensembl chrNW_004955403:52,987,644...53,029,267 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16247775) MGI PMID:16247775 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Hlx H2.0 like homeobox acts_upstream_of_or_within ISO (PMID:8557196) MGI PMID:8557196 NCBI chrNW_004955520:2,937,131...2,941,170
Ensembl chrNW_004955520:2,936,815...2,941,170 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:18635606) MGI PMID:18635606 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420 		JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISO (MGI:4399020|PMID:16888283)
(PMID:16888283)		 UniProt PMID:16888283 MGI:4399020 NCBI chrNW_004955487:878,326...880,783
Ensembl chrNW_004955487:878,326...880,783 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10821773) MGI PMID:10821773 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:19242925), (PMID:8291537) BHF-UCL PMID:8291537 PMID:19242925 NCBI chrNW_004955426:21,666,958...21,841,515
Ensembl chrNW_004955426:21,666,857...21,841,515 		JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (PMID:16423343) MGI PMID:16423343 NCBI chrNW_004955415:26,825,284...26,843,438
Ensembl chrNW_004955415:26,825,284...26,843,438 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISO (MGI:1860627|PMID:10903171)
(PMID:10903171)		 UniProt PMID:10903171 MGI:1860627 NCBI chrNW_004955447:16,570,652...16,613,410
Ensembl chrNW_004955447:16,569,909...16,612,373 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10821773) MGI PMID:10821773 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:16141225) MGI PMID:16141225 NCBI chrNW_004955448:8,937,656...8,947,890
Ensembl chrNW_004955448:8,937,610...8,947,890 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (MGI:4365896|PMID:19660448)
(PMID:19660448)		 UniProt PMID:19660448 MGI:4365896 NCBI chrNW_004955441:12,029,530...12,033,214
Ensembl chrNW_004955441:12,029,480...12,033,214 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3052265|PMID:15254231)
(PMID:15254231)		 UniProt PMID:15254231 MGI:3052265 NCBI chrNW_004955487:2,678,961...2,680,869
Ensembl chrNW_004955487:2,679,145...2,680,521 		JBrowse link
G Tcf21 transcription factor 21 ISO RGD PMID:11804032 RGD:727206 NCBI chrNW_004955439:2,617,562...2,620,613
Ensembl chrNW_004955439:2,617,492...2,620,644 		JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004955408:5,362,423...5,388,684
Ensembl chrNW_004955408:5,362,084...5,388,527 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134 		JBrowse link
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:9272948)
(PMID:9268572)		 MGI PMID:9268572 PMID:9272948 NCBI chrNW_004955422:3,278,615...3,290,799
Ensembl chrNW_004955422:3,278,615...3,291,714 		JBrowse link
G B9d1 B9 domain containing 1 acts_upstream_of_or_within ISO (PMID:22179047) MGI PMID:22179047 NCBI chrNW_004955467:405,487...415,887
Ensembl chrNW_004955467:405,490...416,116 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:20043884) MGI PMID:20043884 NCBI chrNW_004955510:5,812,571...5,936,312
Ensembl chrNW_004955510:5,905,008...5,936,312 		JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within ISO (PMID:18539921) MGI PMID:18539921 NCBI chrNW_004955454:15,899,820...15,918,222 JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004955414:17,444,299...17,557,912
Ensembl chrNW_004955414:17,444,515...17,558,245 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (PMID:16079159) MGI PMID:16079159 NCBI chrNW_004955405:38,985,046...39,134,130
Ensembl chrNW_004955405:38,985,046...39,139,021 		JBrowse link
G Cplane1 ciliogenesis and planar polarity effector complex subunit 1 acts_upstream_of_or_within ISO (PMID:25877302) MGI PMID:25877302 NCBI chrNW_004955426:21,867,876...21,991,889
Ensembl chrNW_004955426:21,868,017...21,983,747 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:12923052)
(PMID:20043884)		 MGI PMID:12923052 PMID:20043884 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in ISO (PMID:9915973) BHF-UCL PMID:9915973 NCBI chrNW_004955452:1,653,783...1,704,619
Ensembl chrNW_004955452:1,651,316...1,751,489 		JBrowse link
G Fbxw4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within ISO (PMID:10471509)
(PMID:9733575)		 MGI PMID:9733575 PMID:10471509 NCBI chrNW_004955485:8,584,836...8,688,416
Ensembl chrNW_004955485:8,584,836...8,669,705 		JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO (PMID:18258918) MGI PMID:18258918 NCBI chrNW_004955406:4,673,797...4,702,858
Ensembl chrNW_004955406:4,674,140...4,702,763 		JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within ISO (PMID:26234751) MGI PMID:26234751 NCBI chrNW_004955431:7,364,937...7,541,419
Ensembl chrNW_004955431:7,364,937...7,541,648 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:19877275)
(PMID:27158779)		 MGI PMID:19877275 PMID:27158779 NCBI chrNW_004955559:1,112,670...1,117,620
Ensembl chrNW_004955559:1,112,855...1,117,413 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940), (PMID:17504941) MGI PMID:17504940 PMID:17504941 NCBI chrNW_004955432:727,784...729,096 JBrowse link
G Gja1 gap junction protein alpha 1 acts_upstream_of_or_within ISO (PMID:19439426) MGI PMID:19439426 NCBI chrNW_004955436:3,612,533...3,618,095
Ensembl chrNW_004955436:3,612,533...3,618,095 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:19056373) MGI PMID:19056373 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:9268572)
(PMID:16254602), (PMID:19036983), (PMID:9268572)
(PMID:22841643)
(PMID:17714700)		 MGI PMID:9268572 PMID:16254602 PMID:17714700 PMID:19036983 PMID:22841643 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Gna12 G protein subunit alpha 12 acts_upstream_of_or_within ISO (PMID:12077299) MGI PMID:12077299 NCBI chrNW_004955460:12,534,210...12,628,090
Ensembl chrNW_004955460:12,534,168...12,622,537 		JBrowse link
G Gnaq G protein subunit alpha q acts_upstream_of_or_within ISO (PMID:12077299) MGI PMID:12077299 NCBI chrNW_004955512:1,381,159...1,658,409 JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21377456) MGI PMID:21377456 NCBI chrNW_004955417:26,401,337...26,533,297
Ensembl chrNW_004955417:26,401,363...26,533,297 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (PMID:12070084) MGI PMID:12070084 NCBI chrNW_004955403:33,478,034...33,481,613
Ensembl chrNW_004955403:33,478,924...33,481,608 		JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chrNW_004955452:10,636,366...10,668,873
Ensembl chrNW_004955452:10,636,366...10,670,864 		JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO (MGI:4889029|PMID:21093383)
(PMID:21093383)		 BHF-UCL PMID:21093383 MGI:4889029 NCBI chrNW_004955526:2,739,099...2,759,640
Ensembl chrNW_004955526:2,728,377...2,759,707 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004955410:28,875,780...28,879,643
Ensembl chrNW_004955410:28,877,055...28,879,465 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004955458:1,231,625...1,234,785
Ensembl chrNW_004955458:1,231,445...1,234,798 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO (PMID:12869760)
(PMID:8900279)
(PMID:17714700)		 MGI PMID:8900279 PMID:12869760 PMID:17714700 NCBI chrNW_004955403:20,541,870...20,556,574 JBrowse link
G Hoxd12 homeobox D12 acts_upstream_of_or_within ISO (PMID:17714700)
(PMID:8900279)		 MGI PMID:8900279 PMID:17714700 NCBI chrNW_004955403:20,562,248...20,563,205
Ensembl chrNW_004955403:20,562,248...20,563,205 		JBrowse link
G Hoxd13 homeobox D13 acts_upstream_of_or_within ISO (PMID:17714700)
(PMID:9342042)
(PMID:8900279)		 MGI PMID:8900279 PMID:9342042 PMID:17714700 NCBI chrNW_004955403:20,568,314...20,575,579
Ensembl chrNW_004955403:20,568,314...20,575,579 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (PMID:15930098) MGI PMID:15930098 NCBI chrNW_004955445:13,542,726...13,580,204
Ensembl chrNW_004955445:13,543,804...13,580,204 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:12701101), (PMID:16254602)
(PMID:15755804), (PMID:15930098)
(PMID:15930098)
(PMID:19036983)		 MGI PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 NCBI chrNW_004955497:1,338,959...1,454,788
Ensembl chrNW_004955497:1,338,904...1,455,122 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISO (PMID:17889828)
(PMID:20660756)		 AgBase
MGI		 PMID:17889828 PMID:20660756 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
G Intu inturned planar cell polarity protein involved_in
acts_upstream_of_or_within		 ISO (PMID:27158779)
(PMID:25774014)		 GO_Central
MGI		 PMID:25774014 PMID:27158779 NCBI chrNW_004955428:13,670,756...13,743,030
Ensembl chrNW_004955428:13,668,774...13,743,090 		JBrowse link
G Lmbr1 limb development membrane protein 1 acts_upstream_of_or_within ISO (PMID:11606546) MGI PMID:11606546 NCBI chrNW_004955491:9,171,462...9,217,996 JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within ISO (PMID:9342042) MGI PMID:9342042 NCBI chrNW_004955403:20,654,961...20,728,173
Ensembl chrNW_004955403:20,654,961...20,729,954 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO (PMID:16517118) MGI PMID:16517118 NCBI chrNW_004955422:1,191,338...1,238,227
Ensembl chrNW_004955422:1,191,338...1,238,227 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:15142971) MGI PMID:15142971 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15142971)
(PMID:19795512)		 MGI PMID:15142971 PMID:19795512 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 involved_in ISO (PMID:26755636) UniProt PMID:26755636 NCBI chrNW_004955449:1,976,186...2,139,044 JBrowse link
G Megf8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (PMID:32203821) MGI PMID:32203821 NCBI chrNW_004955555:549,921...591,978
Ensembl chrNW_004955555:548,416...591,978 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:21045211)
(PMID:23454480)
(PMID:19776033)		 MGI PMID:19776033 PMID:21045211 PMID:23454480 NCBI chrNW_004955451:4,805,542...4,818,233
Ensembl chrNW_004955451:4,804,838...4,821,556 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chrNW_004955514:4,923,552...4,927,471
Ensembl chrNW_004955514:4,923,552...4,927,471 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chrNW_004955408:27,323,405...27,329,484
Ensembl chrNW_004955408:27,323,360...27,329,755 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chrNW_004955487:9,219,528...9,224,818
Ensembl chrNW_004955487:9,219,528...9,224,818 		JBrowse link
G Nog noggin involved_in ISO (PMID:10080184) BHF-UCL PMID:10080184 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:4950000|PMID:21262216)
(PMID:21262216)		 BHF-UCL PMID:21262216 MGI:4950000 NCBI chrNW_004955469:1,954,470...1,961,344
Ensembl chrNW_004955469:1,953,370...1,961,390 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO (MGI:4950000|PMID:21262216) BHF-UCL PMID:21262216 MGI:4950000 NCBI chrNW_004955417:14,502,450...14,510,015
Ensembl chrNW_004955417:14,502,451...14,510,160 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:23913870) MGI PMID:23913870 NCBI chrNW_004955500:1,897,899...1,990,791
Ensembl chrNW_004955500:1,897,912...1,990,875 		JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:15755804), (PMID:9636176) MGI PMID:9636176 PMID:15755804 NCBI chrNW_004955502:2,947,170...2,980,634
Ensembl chrNW_004955502:2,950,562...2,980,634 		JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:20660756) MGI PMID:20660756 NCBI chrNW_004955515:313,612...554,751
Ensembl chrNW_004955515:313,604...553,774 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (PMID:18280297)
(MGI:4461128|PMID:18470945)		 UniProt PMID:18280297 PMID:18470945 MGI:4461128 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:18729207) MGI PMID:18729207 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISO (MGI:5559673|PMID:11044396)
(PMID:11044396)
(PMID:17504940), (PMID:17504941)
(PMID:15930098)
(PMID:20660756)		 Roslin_Institute
MGI		 PMID:11044396 PMID:15930098 PMID:17504940 PMID:17504941 PMID:20660756 MGI:5559673 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Smad4 SMAD family member 4 involved_in ISO (MGI:5444318|PMID:23034633) CACAO PMID:23034633 MGI:5444318 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538 		JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004955436:3,385,216...3,542,497
Ensembl chrNW_004955436:3,386,180...3,540,933 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3487212|PMID:15459098)
(PMID:15459098)		 BHF-UCL PMID:15459098 MGI:3487212 NCBI chrNW_004955451:2,458,612...2,466,264
Ensembl chrNW_004955451:2,457,568...2,466,639 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:12116211), (PMID:9207801)
(PMID:23844108)
(PMID:27046536)		 UniProt
MGI		 PMID:9207801 PMID:12116211 PMID:23844108 PMID:27046536 NCBI chrNW_004955455:15,988,153...16,000,156
Ensembl chrNW_004955455:15,988,663...16,000,063 		JBrowse link
G Tmem107 transmembrane protein 107 involved_in ISO (MGI:5432629|PMID:22698544) UniProt PMID:22698544 MGI:5432629 NCBI chrNW_004955467:8,777,078...8,779,164
Ensembl chrNW_004955467:8,777,071...8,779,164 		JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within ISO (PMID:22179047) MGI PMID:22179047 NCBI chrNW_004955484:2,011,000...2,027,763
Ensembl chrNW_004955484:2,011,000...2,027,763 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004955542:2,264,472...2,301,083
Ensembl chrNW_004955542:2,265,901...2,301,215 		JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (PMID:23141541) MGI PMID:23141541 NCBI chrNW_004955416:9,412,297...9,518,561
Ensembl chrNW_004955416:9,412,297...9,559,655 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674), (PMID:19334287) MGI PMID:19286674 PMID:19334287 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chrNW_004955410:22,003,981...22,005,483 JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within		 ISO (PMID:27158779)
(PMID:24302887)		 GO_Central
MGI		 PMID:24302887 PMID:27158779 NCBI chrNW_004955424:20,723,592...21,114,801 JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) BHF-UCL PMID:16826533 NCBI chrNW_004955429:12,647,993...12,693,998
Ensembl chrNW_004955429:12,647,993...12,694,895 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 ISO RGD PMID:19191224 RGD:2312786 NCBI chrNW_004955412:15,668,332...15,845,384
Ensembl chrNW_004955412:15,668,332...15,845,372 		JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps52 VPS52 subunit of GARP complex acts_upstream_of_or_within ISO (PMID:23142660) MGI PMID:23142660 NCBI chrNW_004955437:1,820,355...1,833,615
Ensembl chrNW_004955437:1,820,817...1,833,363 		JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ret ret proto-oncogene acts_upstream_of_or_within ISO (PMID:15569713) MGI PMID:15569713 NCBI chrNW_004955546:1,221,995...1,252,147
Ensembl chrNW_004955546:1,221,995...1,253,946 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within ISO (PMID:15569713) MGI PMID:15569713 NCBI chrNW_004955413:33,660,025...33,714,649
Ensembl chrNW_004955413:33,660,022...33,712,796 		JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (PMID:16546160) MGI PMID:16546160 NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989 		JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within ISO (PMID:16207763)
(PMID:16207763), (PMID:16611695)
(PMID:16611695)		 MGI PMID:16207763 PMID:16611695 NCBI chrNW_004955416:27,823,611...27,858,112
Ensembl chrNW_004955416:27,823,611...27,858,173 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004955424:27,181,717...27,240,067
Ensembl chrNW_004955424:27,181,099...27,240,446 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004955409:5,281,603...5,502,547
Ensembl chrNW_004955409:5,281,603...5,504,761 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004955415:1,307,553...1,535,435
Ensembl chrNW_004955415:1,309,077...1,537,052 		JBrowse link
G Foxl2 forkhead box L2 acts_upstream_of_or_within ISO (PMID:15056605) MGI PMID:15056605 NCBI chrNW_004955501:83,965...84,476 JBrowse link
G Mfap2 microfibril associated protein 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004955527:1,826,528...1,832,058
Ensembl chrNW_004955527:1,826,528...1,832,052 		JBrowse link
G Rarb retinoic acid receptor beta acts_upstream_of_or_within ISO (PMID:16207763) MGI PMID:16207763 NCBI chrNW_004955430:17,067,536...17,457,558
Ensembl chrNW_004955430:17,295,174...17,460,045 		JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:16207763) MGI PMID:16207763 NCBI chrNW_004955458:480,257...501,172
Ensembl chrNW_004955458:480,070...501,356 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO (PMID:11830579)
(PMID:10595508)		 MGI PMID:10595508 PMID:11830579 NCBI chrNW_004955424:14,283,336...14,309,809
Ensembl chrNW_004955424:14,283,327...14,309,809 		JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:10921901) MGI PMID:10921901 NCBI chrNW_004955427:25,438,652...25,467,360
Ensembl chrNW_004955427:25,438,652...25,467,360 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:18692041) MGI PMID:18692041 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (PMID:18794329) MGI PMID:18794329 NCBI chrNW_004955459:9,641,926...9,783,718
Ensembl chrNW_004955459:9,641,884...9,784,173 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11493558) MGI PMID:11493558 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
G Foxp4 forkhead box P4 acts_upstream_of_or_within ISO (PMID:15361625) MGI PMID:15361625 NCBI chrNW_004955437:8,029,346...8,056,243
Ensembl chrNW_004955437:8,014,939...8,057,033 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136932)
(PMID:9136933)		 MGI PMID:9136932 PMID:9136933 NCBI chrNW_004955403:52,958,318...53,029,267
Ensembl chrNW_004955403:52,987,644...53,029,267 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004955403:14,476,689...14,554,380
Ensembl chrNW_004955403:14,480,162...14,554,702 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:9731532) MGI PMID:9731532 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004955402:33,131,760...33,217,144
Ensembl chrNW_004955402:33,136,778...33,216,844 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within		 ISO (MGI:4946573|PMID:21305474)
(PMID:19619492)
(PMID:18462699)		 BHF-UCL
MGI		 PMID:18462699 PMID:19619492 PMID:21305474 MGI:4946573 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:15069081), (PMID:20034106) MGI PMID:15069081 PMID:20034106 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004955435:13,584,129...13,594,316
Ensembl chrNW_004955435:13,583,611...13,594,316 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004955422:3,278,615...3,290,799
Ensembl chrNW_004955422:3,278,615...3,291,714 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) BHF-UCL PMID:15454078 NCBI chrNW_004955454:4,573,647...5,199,046
Ensembl chrNW_004955454:4,490,923...5,198,506 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within ISO (PMID:7720575) MGI PMID:7720575 NCBI chrNW_004955545:2,777,523...2,782,567
Ensembl chrNW_004955545:2,777,474...2,782,567 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:15371327) MGI PMID:15371327 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO (PMID:9362463) MGI PMID:9362463 NCBI chrNW_004955459:10,839,581...10,844,198 JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004955410:28,875,780...28,879,643
Ensembl chrNW_004955410:28,877,055...28,879,465 		JBrowse link
G Hoxa13 homeobox A13 acts_upstream_of_or_within ISO (PMID:15733672) MGI PMID:15733672 NCBI chrNW_004955410:28,887,952...28,893,515
Ensembl chrNW_004955410:28,890,171...28,893,515 		JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within ISO (PMID:8625797) MGI PMID:8625797 NCBI chrNW_004955410:28,856,661...28,861,803
Ensembl chrNW_004955410:28,856,661...28,861,803 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004955403:20,541,870...20,556,574 JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within ISO (PMID:8625797) MGI PMID:8625797 NCBI chrNW_004955451:12,619,722...12,621,320 JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331) BHF-UCL PMID:21209331 MGI:4888042 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within ISO (PMID:9342042)
(PMID:22916278)		 MGI PMID:9342042 PMID:22916278 NCBI chrNW_004955403:20,654,961...20,728,173
Ensembl chrNW_004955403:20,654,961...20,729,954 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15880584)
(PMID:18256198)
(PMID:19653321)
(PMID:11029008)		 MGI PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chrNW_004955448:18,259,847...18,542,085
Ensembl chrNW_004955448:18,259,083...18,439,646 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chrNW_004955514:4,923,552...4,927,471
Ensembl chrNW_004955514:4,923,552...4,927,471 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chrNW_004955408:27,323,405...27,329,484
Ensembl chrNW_004955408:27,323,360...27,329,755 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:19242925), (PMID:8291537) BHF-UCL PMID:8291537 PMID:19242925 NCBI chrNW_004955426:21,666,958...21,841,515
Ensembl chrNW_004955426:21,666,857...21,841,515 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:4950000|PMID:21262216) BHF-UCL PMID:21262216 MGI:4950000 NCBI chrNW_004955469:1,954,470...1,961,344
Ensembl chrNW_004955469:1,953,370...1,961,390 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO (MGI:4950000|PMID:21262216)
(PMID:21262216)
(MGI:2149941|PMID:11520675)		 BHF-UCL
UniProt		 PMID:11520675 PMID:21262216 MGI:2149941 MGI:4950000 NCBI chrNW_004955417:14,502,450...14,510,015
Ensembl chrNW_004955417:14,502,451...14,510,160 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004955444:6,878,722...6,909,421
Ensembl chrNW_004955444:6,878,722...6,909,421 		JBrowse link
G Reck reversion inducing cysteine rich protein with kazal motifs acts_upstream_of_or_within ISO (PMID:23213437) MGI PMID:23213437 NCBI chrNW_004955472:222,261...276,869
Ensembl chrNW_004955472:223,683...287,089 		JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17553904) MGI PMID:17553904 NCBI chrNW_004955433:11,321,504...11,423,981
Ensembl chrNW_004955433:11,322,590...11,424,569 		JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO (PMID:18256198) MGI PMID:18256198 NCBI chrNW_004955417:30,643,554...30,704,497
Ensembl chrNW_004955417:30,643,554...30,704,497 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004955437:10,598,145...10,885,858
Ensembl chrNW_004955437:10,598,145...10,800,560 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11118883), (PMID:11476582) MGI PMID:11118883 PMID:11476582 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004955448:8,937,656...8,947,890
Ensembl chrNW_004955448:8,937,610...8,947,890 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:12116211) UniProt PMID:12116211 NCBI chrNW_004955455:15,988,153...16,000,156
Ensembl chrNW_004955455:15,988,663...16,000,063 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within		 ISO (PMID:16183809)
(PMID:11572777), (PMID:12490567)		 UniProt
MGI		 PMID:11572777 PMID:12490567 PMID:16183809 NCBI chrNW_004955455:16,133,130...16,217,894
Ensembl chrNW_004955455:16,132,975...16,217,953 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (MGI:1313057|PMID:9811866)
(PMID:9811866)		 UniProt PMID:9811866 MGI:1313057 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO (PMID:25503409) MGI PMID:25503409 NCBI chrNW_004955420:18,178,639...18,384,786
Ensembl chrNW_004955420:18,176,155...18,384,786 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:12175489) MGI PMID:12175489 NCBI chrNW_004955410:22,003,981...22,005,483 JBrowse link
G Wnt7a Wnt family member 7A involved_in
acts_upstream_of_or_within		 ISO (PMID:16826533)
(PMID:15880584)
(PMID:9362463)		 BHF-UCL
MGI		 PMID:9362463 PMID:15880584 PMID:16826533 MGI:48652 NCBI chrNW_004955429:12,647,993...12,693,998
Ensembl chrNW_004955429:12,647,993...12,694,895 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO (PMID:15371327) MGI PMID:15371327 NCBI chrNW_004955581:422,028...438,321
Ensembl chrNW_004955581:421,451...438,380 		JBrowse link
embryonic genitalia morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:12004962) MGI PMID:12004962 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chrNW_004955515:313,612...554,751
Ensembl chrNW_004955515:313,604...553,774 		JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004955408:5,362,423...5,388,684
Ensembl chrNW_004955408:5,362,084...5,388,527 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134 		JBrowse link
embryonic heart tube development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apela apelin receptor early endogenous ligand involved_in ISO (MGI:5909243|PMID:28854362), (MGI:5913613|PMID:28663440) UniProt PMID:28663440 PMID:28854362 MGI:5909243 MGI:5913613 NCBI chrNW_004955403:40,257,467...40,266,275 JBrowse link
G Cdc42 cell division cycle 42 involved_in ISO (PMID:31219639) MGI PMID:31219639 NCBI chrNW_004955452:2,255,940...2,299,042
Ensembl chrNW_004955452:2,255,117...2,299,042 		JBrowse link
G Chrd chordin involved_in ISO (PMID:17685487) MGI PMID:17685487 NCBI chrNW_004955420:23,111,690...23,120,038
Ensembl chrNW_004955420:23,112,093...23,120,036 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:18231602) MGI PMID:18231602 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chrNW_004955452:1,653,783...1,704,619
Ensembl chrNW_004955452:1,651,316...1,751,489 		JBrowse link
G Edn1 endothelin 1 involved_in ISO (PMID:30735130)
(PMID:24875861)
(PMID:24875861), (PMID:31219639)		 MGI PMID:24875861 PMID:30735130 PMID:31219639 NCBI chrNW_004955465:2,287,906...2,314,945
Ensembl chrNW_004955465:2,287,798...2,314,753 		JBrowse link
G Ednra endothelin receptor type A involved_in ISO (PMID:30735130)
(PMID:24875861), (PMID:31219639)
(PMID:20929948)		 MGI PMID:20929948 PMID:24875861 PMID:30735130 PMID:31219639 NCBI chrNW_004955428:3,062,303...3,114,761
Ensembl chrNW_004955428:3,062,303...3,114,761 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16720879) MGI PMID:16720879 NCBI chrNW_004955485:8,517,412...8,521,732
Ensembl chrNW_004955485:8,517,412...8,521,770 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933)
(PMID:9136932)		 MGI PMID:9136932 PMID:9136933 NCBI chrNW_004955403:52,958,318...53,029,267
Ensembl chrNW_004955403:52,987,644...53,029,267 		JBrowse link
G Gja1 gap junction protein alpha 1 acts_upstream_of_or_within ISO (PMID:14732399) MGI PMID:14732399 NCBI chrNW_004955436:3,612,533...3,618,095
Ensembl chrNW_004955436:3,612,533...3,618,095 		JBrowse link
G Gja5 gap junction protein alpha 5 acts_upstream_of_or_within ISO (PMID:14732399)
(PMID:22203979)		 MGI PMID:14732399 PMID:22203979 NCBI chrNW_004955568:635,319...652,692
Ensembl chrNW_004955568:635,042...653,349 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:9500551) MGI PMID:9500551 NCBI chrNW_004955408:8,848,723...8,851,804
Ensembl chrNW_004955408:8,848,559...8,851,994 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:15459110) MGI PMID:15459110 NCBI chrNW_004955425:737,506...742,775
Ensembl chrNW_004955425:735,378...742,775 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668)
(PMID:19000668)		 UniProt PMID:19000668 MGI:3827087 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:14500757) MGI PMID:14500757 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chrNW_004955418:22,537,388...22,701,434
Ensembl chrNW_004955418:22,537,285...22,701,434 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004955403:14,476,689...14,554,380
Ensembl chrNW_004955403:14,480,162...14,554,702 		JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within ISO (PMID:15843414) MGI PMID:15843414 NCBI chrNW_004955408:25,833,649...25,836,673
Ensembl chrNW_004955408:25,832,683...25,836,840 		JBrowse link
G Nkx2-6 NK2 homeobox 6 involved_in ISO (PMID:15649947)
(MGI:3828420|PMID:9545560)		 HGNC-UCL
BHF-UCL		 PMID:9545560 PMID:15649947 MGI:3828420 NCBI chrNW_004955403:46,831,758...46,836,358
Ensembl chrNW_004955403:46,831,696...46,836,333 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628 		JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (PMID:25220058) MGI PMID:25220058 NCBI chrNW_004955407:42,735,078...42,835,851
Ensembl chrNW_004955407:42,735,188...42,835,465 		JBrowse link
G Plxna4 plexin A4 involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453 		JBrowse link
G Slc8a1 solute carrier family 8 member A1 acts_upstream_of_or_within ISO (PMID:21302256) MGI PMID:21302256 NCBI chrNW_004955441:7,653,107...8,037,784
Ensembl chrNW_004955441:7,656,031...7,957,640 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:17610846) MGI PMID:17610846 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
G Sox18 SRY-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:17610846) MGI PMID:17610846 NCBI chrNW_004955528:204,729...206,772 JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within ISO (PMID:15843414) MGI PMID:15843414 NCBI chrNW_004955460:7,794,313...7,856,906
Ensembl chrNW_004955460:7,794,313...7,856,906 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:23844108) MGI PMID:23844108 NCBI chrNW_004955455:15,988,153...16,000,156
Ensembl chrNW_004955455:15,988,663...16,000,063 		JBrowse link
G Tmem94 transmembrane protein 94 acts_upstream_of_or_within ISO (PMID:30526868) MGI PMID:30526868 NCBI chrNW_004955553:2,305,425...2,353,596
Ensembl chrNW_004955553:2,329,995...2,352,898 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004955542:2,264,472...2,301,083
Ensembl chrNW_004955542:2,265,901...2,301,215 		JBrowse link
embryonic heart tube elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx20 T-box transcription factor 20 involved_in ISO (MGI:3579960|PMID:15901664)
(PMID:15901664)		 BHF-UCL PMID:15901664 MGI:3579960 NCBI chrNW_004955460:7,794,313...7,856,906
Ensembl chrNW_004955460:7,794,313...7,856,906 		JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:11076684) MGI PMID:11076684 NCBI chrNW_004955408:8,848,723...8,851,804
Ensembl chrNW_004955408:8,848,559...8,851,994 		JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cimap3 ciliary microtubule associated protein 3 acts_upstream_of_or_within ISO (PMID:20643351) MGI PMID:20643351 NCBI chrNW_004955435:14,888,554...14,898,274
Ensembl chrNW_004955435:14,892,459...14,898,092 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in ISO (MGI:3054669|PMID:15475956) BHF-UCL PMID:15475956 MGI:3054669 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331)
(PMID:21209331)		 CACAO PMID:21209331 MGI:4888042 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G Invs inversin acts_upstream_of_or_within ISO (PMID:9192865) MGI PMID:9192865 NCBI chrNW_004955419:25,445,404...25,584,244
Ensembl chrNW_004955419:25,444,582...25,581,201 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISO (MGI:5551355|PMID:24052814)
(PMID:24052814)		 UniProt PMID:24052814 MGI:5551355 NCBI chrNW_004955555:549,921...591,978
Ensembl chrNW_004955555:548,416...591,978 		JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within ISO (PMID:9192865) MGI PMID:9192865 NCBI chrNW_004955408:25,833,649...25,836,673
Ensembl chrNW_004955408:25,832,683...25,836,840 		JBrowse link
G Pitx2 paired like homeodomain 2 involved_in ISO (MGI:3783941|PMID:17234970)
(PMID:17234970)		 BHF-UCL PMID:17234970 MGI:3783941 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
embryonic heart tube morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in ISO (PMID:19506109) BHF-UCL PMID:19506109 NCBI chrNW_004955449:15,587,958...15,706,432
Ensembl chrNW_004955449:15,640,230...15,708,694 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in ISO (MGI:4354447|PMID:19609448)
(PMID:19609448)		 BHF-UCL PMID:19609448 MGI:4354447 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISO (MGI:5551355|PMID:24052814) UniProt PMID:24052814 MGI:5551355 NCBI chrNW_004955555:549,921...591,978
Ensembl chrNW_004955555:548,416...591,978 		JBrowse link
G Ryr2 ryanodine receptor 2 involved_in ISO (MGI:1267127|PMID:9628868) UniProt PMID:9628868 MGI:1267127 NCBI chrNW_004955492:2,647,597...3,275,512
Ensembl chrNW_004955492:2,648,956...3,076,509 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (MGI:4946573|PMID:21305474)
(PMID:21305474)		 BHF-UCL PMID:21305474 MGI:4946573 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
G Tbx20 T-box transcription factor 20 involved_in ISO (MGI:3579960|PMID:15901664)
(PMID:15901664)		 BHF-UCL PMID:15901664 MGI:3579960 NCBI chrNW_004955460:7,794,313...7,856,906
Ensembl chrNW_004955460:7,794,313...7,856,906 		JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004955414:28,166,562...28,341,275
Ensembl chrNW_004955414:28,175,543...28,333,856 		JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004955559:1,450,706...1,465,947
Ensembl chrNW_004955559:1,450,706...1,465,947 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004955412:5,423,866...5,533,728
Ensembl chrNW_004955412:5,423,855...5,534,408 		JBrowse link
embryonic hemopoiesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 involved_in ISO (MGI:2158533|PMID:11806972)
(PMID:11806972)		 UniProt PMID:11806972 MGI:2158533 NCBI chrNW_004955413:25,406,589...25,408,727
Ensembl chrNW_004955413:25,406,589...25,412,218 		JBrowse link
G Ccdc134 coiled-coil domain containing 134 acts_upstream_of_or_within ISO (PMID:29115376) MGI PMID:29115376 NCBI chrNW_004955413:27,248,879...27,265,635
Ensembl chrNW_004955413:27,249,272...27,265,635 		JBrowse link
G Flt3lg fms related receptor tyrosine kinase 3 ligand involved_in ISO (PMID:21149635) DFLAT PMID:21149635 NCBI chrNW_004955559:1,364,056...1,371,245
Ensembl chrNW_004955559:1,365,938...1,370,002 		JBrowse link
G Gata1 GATA binding protein 1 acts_upstream_of_or_within ISO (PMID:9576834) MGI PMID:9576834 NCBI chrNW_004955543:334,581...342,042
Ensembl chrNW_004955543:334,061...342,061 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO (PMID:10631184)
(PMID:7550312)		 MGI PMID:7550312 PMID:10631184 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:16787915) MGI PMID:16787915 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497 		JBrowse link
G Kat6a lysine acetyltransferase 6A acts_upstream_of_or_within ISO (PMID:16702405) MGI PMID:16702405 NCBI chrNW_004955536:900,198...1,015,520
Ensembl chrNW_004955536:900,198...1,015,520 		JBrowse link
G Kdr kinase insert domain receptor involved_in ISO (MGI:74276|PMID:7596435) UniProt PMID:7596435 MGI:74276 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583 		JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase involved_in ISO (MGI:4820916|PMID:20536544) UniProt PMID:20536544 MGI:4820916 NCBI chrNW_004955447:16,149,014...16,226,151
Ensembl chrNW_004955447:16,148,605...16,226,734 		JBrowse link
G Kitlg KIT ligand involved_in ISO (PMID:21149635) DFLAT PMID:21149635 NCBI chrNW_004955405:25,816,137...25,969,006
Ensembl chrNW_004955405:25,886,447...25,969,395 		JBrowse link
G Klf1 KLF transcription factor 1 acts_upstream_of_or_within ISO (PMID:19409822)
(PMID:7753194)		 MGI PMID:7753194 PMID:19409822 NCBI chrNW_004955415:31,939,994...31,943,539
Ensembl chrNW_004955415:31,939,873...31,943,545 		JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO (PMID:9639506) MGI PMID:9639506 NCBI chrNW_004955412:19,586,435...19,670,149
Ensembl chrNW_004955412:19,586,141...19,665,527 		JBrowse link
G Lmo2 LIM domain only 2 acts_upstream_of_or_within ISO (PMID:10631184) MGI PMID:10631184 NCBI chrNW_004955422:12,354,865...12,362,026
Ensembl chrNW_004955422:12,354,845...12,362,470 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:14500757) MGI PMID:14500757 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO (PMID:11468159) MGI PMID:11468159 NCBI chrNW_004955462:11,777,168...12,083,068
Ensembl chrNW_004955462:11,812,649...12,082,316 		JBrowse link
G Sh2b3 SH2B adaptor protein 3 acts_upstream_of_or_within
acts_upstream_of_negative_effect		 ISO (PMID:14612394) MGI
BHF-UCL		 PMID:14612394 NCBI chrNW_004955482:8,079,905...8,100,791
Ensembl chrNW_004955482:8,096,160...8,097,765 		JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in
acts_upstream_of_or_within		 ISO (MGI:3848867|PMID:19200805)
(PMID:19200805)
(PMID:9269761)
(PMID:7830794)
(PMID:7624372)
(PMID:15677556)		 UniProt
MGI		 PMID:7624372 PMID:7830794 PMID:9269761 PMID:15677556 PMID:19200805 MGI:3848867 NCBI chrNW_004955464:11,304,611...11,317,420
Ensembl chrNW_004955464:11,310,628...11,315,924 		JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in ISO (MGI:2678274|PMID:12975342) BHF-UCL PMID:12975342 MGI:2678274 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837 		JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (PMID:22187428) MGI PMID:22187428 NCBI chrNW_004955506:4,440,555...4,579,642
Ensembl chrNW_004955506:4,440,555...4,559,070 		JBrowse link
G Tpo thyroid peroxidase involved_in ISO (PMID:21149635) DFLAT PMID:21149635 NCBI chrNW_004955487:485,029...530,287
Ensembl chrNW_004955487:494,746...529,416 		JBrowse link
G Zfpm1 zinc finger protein, FOG family member 1 involved_in ISO (MGI:3583527|PMID:14614148) BHF-UCL PMID:14614148 MGI:3583527 NCBI chrNW_004955541:2,461,690...2,495,614 JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dact1 dishevelled binding antagonist of beta catenin 1 involved_in ISO (MGI:4457465|PMID:20145239)
(PMID:20145239)		 UniProt PMID:20145239 MGI:4457465 NCBI chrNW_004955466:12,367,760...12,374,141
Ensembl chrNW_004955466:12,367,775...12,373,036 		JBrowse link
G Hoxa13 homeobox A13 ISO RGD PMID:17161201 RGD:1599527 NCBI chrNW_004955410:28,887,952...28,893,515
Ensembl chrNW_004955410:28,890,171...28,893,515 		JBrowse link
G Hoxd13 homeobox D13 ISO RGD PMID:17161201 RGD:1599527 NCBI chrNW_004955403:20,568,314...20,575,579
Ensembl chrNW_004955403:20,568,314...20,575,579 		JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004955408:5,362,423...5,388,684
Ensembl chrNW_004955408:5,362,084...5,388,527 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134 		JBrowse link
embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff3 ALF transcription elongation factor 3 involved_in ISO (PMID:18616733)
(MGI:3819916|PMID:18616733)		 BHF-UCL PMID:18616733 MGI:3819916 NCBI chrNW_004955470:5,800,152...6,183,761
Ensembl chrNW_004955470:5,804,117...6,183,222 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004955435:13,584,129...13,594,316
Ensembl chrNW_004955435:13,583,611...13,594,316 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004955422:3,278,615...3,290,799
Ensembl chrNW_004955422:3,278,615...3,291,714 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:10964473) MGI PMID:10964473 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO (PMID:16207732) MGI PMID:16207732 NCBI chrNW_004955444:17,859,999...18,067,623
Ensembl chrNW_004955444:17,858,771...18,067,248 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:12923052)
(PMID:18231602)		 MGI PMID:12923052 PMID:18231602 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:16319892) MGI PMID:16319892 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (PMID:16245339) MGI PMID:16245339 NCBI chrNW_004955422:16,362,418...16,364,126 JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16245339) MGI PMID:16245339 NCBI chrNW_004955485:8,517,412...8,521,732
Ensembl chrNW_004955485:8,517,412...8,521,770 		JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO (PMID:10964473) MGI PMID:10964473 NCBI chrNW_004955473:969,627...1,431,706
Ensembl chrNW_004955473:969,800...1,431,483 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19653321)
(PMID:15880584)
(PMID:18256198)		 MGI PMID:15880584 PMID:18256198 PMID:19653321 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chrNW_004955448:18,259,847...18,542,085
Ensembl chrNW_004955448:18,259,083...18,439,646 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:14500757) MGI PMID:14500757 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Mmp13 matrix metallopeptidase 13 ISO RGD PMID:11850435 RGD:1582550 NCBI chrNW_004955412:6,106,994...6,118,760
Ensembl chrNW_004955412:6,106,994...6,118,760 		JBrowse link
G