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ONTOLOGY REPORT - ANNOTATIONS


Term:entrainment of circadian clock
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Accession:GO:0009649 term browser browse the term
Definition:The synchronization of a circadian rhythm to environmental time cues such as light.
Synonyms:related_synonym: regulation of circadian rhythm phase


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entrainment of circadian clock term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh7 atonal bHLH transcription factor 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2445865|PMID:12451142) MGI
Ensembl
PMID:12451142 GO_REF:0000107 MGI:2445865 NCBI chrNW_004936521:10,038,345...10,039,345 JBrowse link
G Chrm1 cholinergic receptor muscarinic 1 involved_in ISS AgBase GO_REF:0000024 NCBI chrNW_004936581:387,939...400,740 JBrowse link
G Clock clock circadian regulator ISO RGD PMID:10095082 RGD:632379 NCBI chrNW_004936482:17,789,834...17,900,371 JBrowse link
G Gna11 G protein subunit alpha 11 involved_in ISS AgBase GO_REF:0000024 NCBI chrNW_004936588:1,770,777...1,789,143 JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO (MGI:3838062|PMID:19217292) MGI PMID:19217292 MGI:3838062 NCBI chrNW_004936532:5,236,175...5,238,689 JBrowse link
G Phlpp1 PH domain and leucine rich repeat protein phosphatase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4420841|PMID:20080691) MGI
Ensembl
PMID:20080691 GO_REF:0000107 MGI:4420841 NCBI chrNW_004936497:2,467,776...2,683,794 JBrowse link
G Sox14 SRY-box transcription factor 14 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5440343|PMID:22920256) MGI
Ensembl
PMID:22920256 GO_REF:0000107 MGI:5440343 NCBI chrNW_004936540:160,638...162,662 JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh7 atonal bHLH transcription factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,038,345...10,039,345 JBrowse link
G Bhlhe40 basic helix-loop-helix family member e40 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936577:4,316,099...4,321,193 JBrowse link
G Crtc1 CREB regulated transcription coactivator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,551,621...2,625,327 JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:7,929,138...7,994,797 JBrowse link
G Cry2 cryptochrome circadian regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:3,133,849...3,168,472 JBrowse link
G Fbxl3 F-box and leucine rich repeat protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936511:4,259,066...4,280,501 JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISO (MGI:3838062|PMID:19217292) UniProt PMID:19217292 MGI:3838062 NCBI chrNW_004936532:5,236,175...5,238,689 JBrowse link
G LOC101973554 F-box/LRR-repeat protein 21 involved_in ISO (MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856) UniProt PMID:23452855 PMID:23452856 MGI:5470183 MGI:5487698 NCBI chrNW_004936597:3,037,282...3,045,145 JBrowse link
G LOC101976473 RNA-binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,960,066...2,968,092 JBrowse link
G Mta1 metastasis associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:117,785...140,917 JBrowse link
G Nr2f6 nuclear receptor subfamily 2 group F member 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530176|PMID:15741322) MGI
Ensembl
PMID:15741322 GO_REF:0000107 MGI:3530176 NCBI chrNW_004936596:3,596,720...3,606,283 JBrowse link
G Opn4 opsin 4 acts_upstream_of_or_within ISO (MGI:5925970|PMID:26320947) MGI PMID:26320947 MGI:5925970 NCBI chrNW_004936804:261,210...272,449 JBrowse link
G Opn5 opsin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:12,740,038...12,766,310 JBrowse link
G Pde6b phosphodiesterase 6B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:22,418,037...22,472,251 JBrowse link
G Per1 period circadian regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,366,883...1,382,138 JBrowse link
G Pml PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:33,135,186...33,173,218 JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,345,982...2,348,494 JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:3,981,364...4,002,083 JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:3,631,794...3,651,754 JBrowse link
G Rbm4b RNA binding motif protein 4B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,934,951...2,945,753 JBrowse link
G Sik1 salt inducible kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:774,749...784,326 JBrowse link
G Tp53 tumor protein p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Usp2 ubiquitin specific peptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,284,243...4,310,545 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14993
    regulation of biological process 10186
      regulation of circadian rhythm 130
        entrainment of circadian clock 28
          entrainment of circadian clock by photoperiod 23
Path 2
Term Annotations click to browse term
  biological_process 14993
    rhythmic process 371
      circadian rhythm 257
        regulation of circadian rhythm 130
          entrainment of circadian clock 28
            entrainment of circadian clock by photoperiod 23
paths to the root