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ONTOLOGY REPORT - ANNOTATIONS


Term:entrainment of circadian clock
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Accession:GO:0009649 term browser browse the term
Definition:The synchronization of a circadian rhythm to environmental time cues such as light.
Synonyms:related_synonym: regulation of circadian rhythm phase



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entrainment of circadian clock term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOH7 atonal bHLH transcription factor 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2445865|PMID:12451142) MGI
Ensembl
PMID:12451142 GO_REF:0000107 MGI:2445865 NCBI chr14:71,398,939...71,402,479
Ensembl chr14:71,400,980...71,401,447
JBrowse link
G CHRM1 cholinergic receptor muscarinic 1 involved_in IMP (PMID:12196552) AgBase
AgBase
PMID:12196552 NCBI chr 2:8,858,765...8,872,042 JBrowse link
G CLOCK clock circadian regulator ISO RGD PMID:10095082 RGD:632379 NCBI chr 8:54,793,323...54,910,192
Ensembl chr 8:54,793,342...54,877,777
JBrowse link
G GNA11 G protein subunit alpha 11 involved_in ISS AgBase
AgBase
GO_REF:0000024 NCBI chr 2:75,439,405...75,456,855
Ensembl chr 2:75,437,201...75,457,092
JBrowse link
G GNAQ G protein subunit alpha q involved_in ISS AgBase
AgBase
GO_REF:0000024 NCBI chr 1:230,607,469...230,906,988
Ensembl chr 1:230,605,265...230,907,674
JBrowse link
G ID2 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO (MGI:3838062|PMID:19217292) MGI PMID:19217292 MGI:3838062 NCBI chr 3:127,500,759...127,503,207
Ensembl chr 3:127,500,763...127,503,257
JBrowse link
G PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4420841|PMID:20080691) Ensembl
Ensembl
MGI
PMID:20080691 GO_REF:0000107 MGI:4420841 NCBI chr 1:158,642,810...158,863,643
Ensembl chr 1:158,642,818...158,862,106
JBrowse link
G SOX14 SRY-box transcription factor 14 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5440343|PMID:22920256) Ensembl
Ensembl
MGI
PMID:22920256 GO_REF:0000107 MGI:5440343 NCBI chr13:78,620,818...78,621,702
Ensembl chr13:78,620,984...78,622,577
JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOH7 atonal bHLH transcription factor 7 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:71,398,939...71,402,479
Ensembl chr14:71,400,980...71,401,447
JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:61,526,121...61,533,686
Ensembl chr13:61,526,116...61,533,674
JBrowse link
G CRTC1 CREB regulated transcription coactivator 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:59,069,334...59,157,196
Ensembl chr 2:59,069,335...59,157,176
JBrowse link
G CRY1 cryptochrome circadian regulator 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:13,275,265...13,429,566
Ensembl chr 5:13,275,545...13,364,593
JBrowse link
G CRY2 cryptochrome circadian regulator 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:16,587,101...16,620,380
Ensembl chr 2:16,587,109...16,620,385
JBrowse link
G FBXL12 F-box and leucine rich repeat protein 12 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:68,692,994...68,701,917
Ensembl chr 2:68,693,001...68,706,048
JBrowse link
G FBXL17 F-box and leucine rich repeat protein 17 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:112,989,134...113,480,564
Ensembl chr 2:112,989,145...113,480,210
JBrowse link
G FBXL21 F-box and leucine rich repeat protein 21 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:138,097,009...138,108,284 JBrowse link
G FBXL22 F-box and leucine rich repeat protein 22 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:108,408,227...108,411,937
Ensembl chr 1:108,408,995...108,411,768
JBrowse link
G FBXL3 F-box and leucine rich repeat protein 3 involved_in IEA
IBA
(PMID:21873635) Ensembl
Ensembl
GO_Central
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr11:49,131,663...49,151,380
Ensembl chr11:49,131,665...49,151,009
JBrowse link
G FBXL6 F-box and leucine rich repeat protein 6 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:424,433...427,799
Ensembl chr 4:424,508...427,799
JBrowse link
G FBXL8 F-box and leucine rich repeat protein 8 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 6:27,803,581...27,813,404
Ensembl chr 6:27,803,590...27,807,788
JBrowse link
G ID2 inhibitor of DNA binding 2 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 3:127,500,759...127,503,207
Ensembl chr 3:127,500,763...127,503,257
JBrowse link
G MTA1 metastasis associated 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107
G NR2F6 nuclear receptor subfamily 2 group F member 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3530176|PMID:15741322) Ensembl
Ensembl
MGI
PMID:15741322 GO_REF:0000107 MGI:3530176 NCBI chr 2:60,426,116...60,438,178
Ensembl chr 2:60,426,618...60,438,177
JBrowse link
G OPN4 opsin 4 acts_upstream_of_or_within ISO (MGI:5925970|PMID:26320947) MGI PMID:26320947 MGI:5925970 NCBI chr14:87,645,563...87,660,820
Ensembl chr14:87,647,238...87,658,815
JBrowse link
G OPN5 opsin 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:42,476,125...42,507,181
Ensembl chr 7:42,476,125...42,527,121
JBrowse link
G PDE6B phosphodiesterase 6B involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:80,378...111,960
Ensembl chr 8:80,378...110,672
JBrowse link
G PER1 period circadian regulator 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:53,361,863...53,376,723
Ensembl chr12:53,361,889...53,374,248
JBrowse link
G PER2 period circadian regulator 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr15:137,793,419...137,837,854
Ensembl chr15:137,793,422...137,837,070
JBrowse link
G PER3 period circadian regulator 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 6:68,487,634...68,548,718 JBrowse link
G PML PML nuclear body scaffold involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:59,405,044...59,450,155
Ensembl chr 7:59,405,053...59,450,105
JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:5,120,202...5,123,168
Ensembl chr 2:5,119,939...5,123,617
JBrowse link
G PPP1CB protein phosphatase 1 catalytic subunit beta involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 3:110,437,681...110,474,896
Ensembl chr 3:110,437,688...110,474,891
JBrowse link
G PPP1CC protein phosphatase 1 catalytic subunit gamma involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:32,071,472...32,091,267
Ensembl chr14:32,070,545...32,091,499
JBrowse link
G RBM4B RNA binding motif protein 4B involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 2:5,745,364...5,758,177 JBrowse link
G SIK1 salt inducible kinase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:206,454,695...206,465,802
Ensembl chr13:206,454,718...206,465,807
JBrowse link
G TP53 tumor protein p53 involved_in ISS
IEA
UniProt
UniProt
Ensembl
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,644...52,953,818
JBrowse link
G USP2 ubiquitin specific peptidase 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:46,563,469...46,590,392
Ensembl chr 9:46,563,482...46,590,392
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17341
    regulation of biological process 12204
      regulation of circadian rhythm 136
        entrainment of circadian clock 35
          entrainment of circadian clock by photoperiod 29
Path 2
Term Annotations click to browse term
  biological_process 17341
    rhythmic process 394
      circadian rhythm 270
        regulation of circadian rhythm 136
          entrainment of circadian clock 35
            entrainment of circadian clock by photoperiod 29
paths to the root