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ONTOLOGY REPORT - ANNOTATIONS


Term:entrainment of circadian clock
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Accession:GO:0009649 term browser browse the term
Definition:The synchronization of a circadian rhythm to environmental time cues such as light.
Synonyms:related_synonym: regulation of circadian rhythm phase



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entrainment of circadian clock term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOH7 atonal bHLH transcription factor 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2445865|PMID:12451142) MGI
Ensembl
PMID:12451142 GO_REF:0000107 MGI:2445865 NCBI chr 4:19,466,476...19,479,279
Ensembl chr 4:19,478,694...19,479,152
JBrowse link
G CHRM1 cholinergic receptor muscarinic 1 involved_in ISS AgBase GO_REF:0000024 NCBI chr18:53,783,938...53,797,750
Ensembl chr18:53,795,326...53,796,708
JBrowse link
G CLOCK clock circadian regulator ISO RGD PMID:10095082 RGD:632379 NCBI chr13:47,684,409...47,825,733
Ensembl chr13:47,691,709...47,758,784
JBrowse link
G GNAQ G protein subunit alpha q involved_in ISS AgBase
AgBase
GO_REF:0000024 NCBI chr 1:80,733,530...80,928,065
Ensembl chr 1:80,715,366...80,928,065
JBrowse link
G LOC102151783 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO (MGI:3838062|PMID:19217292) MGI PMID:19217292 MGI:3838062 NCBI chr10:54,954,852...54,957,116 JBrowse link
G PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 acts_upstream_of_or_within ISO (MGI:4420841|PMID:20080691) MGI PMID:20080691 MGI:4420841 NCBI chr 1:14,027,741...14,234,229
Ensembl chr 1:14,028,652...14,234,229
JBrowse link
G SOX14 SRY-box transcription factor 14 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5440343|PMID:22920256) MGI
Ensembl
Ensembl
PMID:22920256 GO_REF:0000107 MGI:5440343 NCBI chr23:34,079,534...34,081,598
Ensembl chr23:34,080,037...34,080,759
JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOH7 atonal bHLH transcription factor 7 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:19,466,476...19,479,279
Ensembl chr 4:19,478,694...19,479,152
JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:12,641,872...12,647,519
Ensembl chr20:12,642,702...12,647,525
JBrowse link
G CRTC1 CREB regulated transcription coactivator 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:44,315,021...44,394,385
Ensembl chr20:44,319,858...44,394,599
JBrowse link
G CRY1 cryptochrome circadian regulator 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr10:31,681,098...31,792,995
Ensembl chr10:31,681,288...31,780,306
JBrowse link
G CRY2 cryptochrome circadian regulator 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:43,538,335...43,573,651
Ensembl chr18:43,539,612...43,573,875
JBrowse link
G FBXL12 F-box and leucine rich repeat protein 12 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:51,183,064...51,187,605
Ensembl chr20:51,183,285...51,187,738
JBrowse link
G FBXL17 F-box and leucine rich repeat protein 17 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:3,602,105...4,086,182
Ensembl chr 3:3,618,236...4,083,554
JBrowse link
G FBXL21 F-box and leucine rich repeat protein 21 involved_in ISO (MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856) UniProt PMID:23452855 PMID:23452856 MGI:5470183 MGI:5487698 NCBI chr11:23,846,512...23,859,141 JBrowse link
G FBXL22 F-box and leucine rich repeat protein 22 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:28,187,452...28,191,019
Ensembl chr30:28,187,473...28,191,004
JBrowse link
G FBXL3 F-box and leucine rich repeat protein 3 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr22:30,579,598...30,598,879
Ensembl chr22:30,581,474...30,598,886
JBrowse link
G FBXL6 F-box and leucine rich repeat protein 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:37,780,991...37,783,976
Ensembl chr13:37,780,974...37,785,045
JBrowse link
G FBXL8 F-box and leucine rich repeat protein 8 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:82,201,732...82,206,058 JBrowse link
G LOC102151783 inhibitor of DNA binding 2 involved_in ISO (MGI:3838062|PMID:19217292) UniProt PMID:19217292 MGI:3838062 NCBI chr10:54,954,852...54,957,116 JBrowse link
G MTA1 metastasis associated 1 involved_in ISO (MGI:5582861|PMID:24089055) UniProt PMID:24089055 MGI:5582861 NCBI chr 8:72,752,894...72,772,236
Ensembl chr 8:72,753,178...72,772,762
JBrowse link
G NR2F6 nuclear receptor subfamily 2 group F member 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3530176|PMID:15741322) Ensembl
MGI
Ensembl
PMID:15741322 GO_REF:0000107 MGI:3530176 NCBI chr20:45,490,113...45,500,606
Ensembl chr20:45,464,356...45,500,608
JBrowse link
G OPN4 opsin 4 acts_upstream_of_or_within ISO (MGI:5925970|PMID:26320947) MGI PMID:26320947 MGI:5925970 NCBI chr 4:34,350,058...34,365,410
Ensembl chr 4:34,355,128...34,365,215
JBrowse link
G OPN5 opsin 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:15,831,311...15,858,121
Ensembl chr12:15,831,311...15,877,721
JBrowse link
G PDE6B phosphodiesterase 6B involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:91,746,571...91,775,372
Ensembl chr 3:91,746,571...91,775,372
JBrowse link
G PER1 period circadian regulator 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:32,957,517...32,972,368
Ensembl chr 5:32,957,127...32,968,465
JBrowse link
G PER2 period circadian regulator 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:48,716,499...48,761,617
Ensembl chr25:48,717,173...48,758,755
JBrowse link
G PER3 period circadian regulator 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:61,445,580...61,499,393
Ensembl chr 5:61,445,461...61,498,499
JBrowse link
G PML PML nuclear body scaffold involved_in ISO (MGI:5314433|PMID:22274616) UniProt PMID:22274616 MGI:5314433 NCBI chr30:37,232,337...37,278,434
Ensembl chr30:37,232,306...37,277,741
JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha involved_in IEA
ISS
Ensembl
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr18:50,062,352...50,065,166
Ensembl chr18:50,062,352...50,065,166
JBrowse link
G PPP1CB protein phosphatase 1 catalytic subunit beta involved_in ISO (MGI:5086036|PMID:21712997) UniProt PMID:21712997 MGI:5086036 NCBI chr17:22,680,691...22,699,999
Ensembl chr17:22,679,783...22,699,999
JBrowse link
G PPP1CC protein phosphatase 1 catalytic subunit gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:8,497,350...8,518,467
Ensembl chr26:8,495,067...8,518,675
JBrowse link
G RBM4B RNA binding motif protein 4B involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr18:50,676,138...50,686,061
Ensembl chr18:50,676,162...50,685,573
JBrowse link
G SIK1 salt inducible kinase 1 involved_in ISO (MGI:5532783|PMID:23993098) UniProt PMID:23993098 MGI:5532783 NCBI chr31:37,455,130...37,466,829 JBrowse link
G TP53 tumor protein p53 involved_in ISS
IEA
UniProt
Ensembl
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
G USP2 ubiquitin specific peptidase 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:14,525,685...14,550,914
Ensembl chr 5:14,525,797...14,549,291
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17250
    regulation of biological process 11767
      regulation of circadian rhythm 135
        entrainment of circadian clock 34
          entrainment of circadian clock by photoperiod 29
Path 2
Term Annotations click to browse term
  biological_process 17250
    rhythmic process 394
      circadian rhythm 268
        regulation of circadian rhythm 135
          entrainment of circadian clock 34
            entrainment of circadian clock by photoperiod 29
paths to the root