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ONTOLOGY REPORT - ANNOTATIONS


Term:entrainment of circadian clock
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Accession:GO:0009649 term browser browse the term
Definition:The synchronization of a circadian rhythm to environmental time cues such as light.
Synonyms:related_synonym: regulation of circadian rhythm phase



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entrainment of circadian clock term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh7 atonal bHLH transcription factor 7 acts_upstream_of_or_within ISO MGI:2159013 (MGI:2445865|PMID:12451142) RGD PMID:12451142 MGI:2445865 NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275
JBrowse link
G Chrm1 cholinergic receptor, muscarinic 1 involved_in ISO (PMID:12196552) RGD PMID:12196552 NCBI chr 1:205,567,046...205,583,001
Ensembl chr 1:205,567,220...205,582,356
JBrowse link
G Clock clock circadian regulator IEP RGD PMID:10095082 RGD:632379 NCBI chr14:31,908,542...31,992,673
Ensembl chr14:31,908,566...31,990,400
JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO MGI:3838359 (MGI:3838062|PMID:19217292) RGD PMID:19217292 MGI:3838062 NCBI chr 6:41,740,556...41,742,393
Ensembl chr 6:41,728,946...41,744,400
JBrowse link
G Phlpp1 PH domain and leucine rich repeat protein phosphatase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4421807 (MGI:4420841|PMID:20080691)
Ensembl
RGD
PMID:20080691 GO_REF:0000107 MGI:4420841 NCBI chr13:22,308,532...22,530,978
Ensembl chr13:22,308,548...22,530,977
JBrowse link
G Sox14 SRY-box transcription factor 14 acts_upstream_of_or_within ISO (MGI:5440343|PMID:22920256) RGD PMID:22920256 MGI:5440343 NCBI chr 8:100,421,982...100,423,918
Ensembl chr 8:100,421,982...100,423,918
JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase TAS RGD PMID:8770929 RGD:1298540 NCBI chr10:101,827,072...101,831,805
Ensembl chr10:101,827,301...101,831,801
JBrowse link
G Atoh7 atonal bHLH transcription factor 7 involved_in ISO (MGI:5699646|PMID:26392540) RGD PMID:26392540 MGI:5699646 NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275
JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 involved_in IEA
ISO
GO_REF:0000107
(MGI:3798698|PMID:18411297)
Ensembl
RGD
PMID:18411297 GO_REF:0000107 MGI:3798698 NCBI chr 4:141,618,453...141,624,154
Ensembl chr 4:141,618,476...141,624,774
JBrowse link
G Crtc1 CREB regulated transcription coactivator 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5532783|PMID:23993098)
UniProt
RGD
PMID:23993098 GO_REF:0000024 MGI:5532783 NCBI chr16:18,988,197...19,046,913
Ensembl chr16:18,988,250...19,043,381
JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5490394|PMID:23616524)
PMID:21873635
UniProt
RGD
PMID:23616524 PMID:21873635 GO_REF:0000024 MGI:5490394, RGD:13792537 NCBI chr 7:18,529,823...18,594,092
Ensembl chr 7:18,529,823...18,594,091
JBrowse link
G Cry2 cryptochrome circadian regulator 2 involved_in ISS
ISO
IBA
IEA
GO_REF:0000024
(MGI:5490394|PMID:23616524)
PMID:21873635
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23616524 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5490394, RGD:13792537 NCBI chr 3:78,374,995...78,405,001
Ensembl chr 3:78,374,995...78,404,965
JBrowse link
G Fbxl12 F-box and leucine-rich repeat protein 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:19,175,864...19,183,373
Ensembl chr 8:19,160,352...19,183,607
JBrowse link
G Fbxl21 F-box and leucine-rich repeat protein 21 involved_in IBA
ISO
PMID:21873635
(MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856)
RGD PMID:23452855 PMID:23452856 PMID:21873635 MGI:5470183 MGI:5487698, RGD:13792537 NCBI chr17:8,060,412...8,077,415
Ensembl chr17:8,060,414...8,073,359
JBrowse link
G Fbxl22 F-box and leucine-rich repeat protein 22 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:67,069,998...67,076,685
Ensembl chr 8:67,069,998...67,076,685
JBrowse link
G Fbxl3 F-box and leucine-rich repeat protein 3 involved_in IBA
ISO
PMID:21873635
(MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856), (MGI:5490394|PMID:23616524)
RGD PMID:23452855 PMID:23452856 PMID:23616524 PMID:21873635 MGI:5470183 MGI:5487698 MGI:5490394, RGD:13792537 NCBI chr15:79,906,795...79,926,678
Ensembl chr15:79,906,795...79,927,867
JBrowse link
G Fbxl6 F-box and leucine-rich repeat protein 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:108,259,097...108,262,528
Ensembl chr 7:108,257,160...108,262,513
JBrowse link
G Fbxl8 F-box and leucine-rich repeat protein 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:33,142,653...33,147,268
Ensembl chr19:33,142,715...33,147,262
JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3838062|PMID:19217292)
UniProt
RGD
PMID:19217292 GO_REF:0000024 MGI:3838062 NCBI chr 6:41,740,556...41,742,393
Ensembl chr 6:41,728,946...41,744,400
JBrowse link
G Mta1 metastasis associated 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5582861|PMID:24089055)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24089055 GO_REF:0000024 GO_REF:0000107 MGI:5582861 NCBI chr 6:132,178,608...132,217,641
Ensembl chr 6:132,178,853...132,217,641
JBrowse link
G Nr2f6 nuclear receptor subfamily 2, group F, member 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3574037 (MGI:3530176|PMID:15741322)
Ensembl
RGD
PMID:15741322 GO_REF:0000107 MGI:3530176 NCBI chr16:18,046,012...18,053,914
Ensembl chr16:18,046,013...18,053,459
JBrowse link
G Opn4 opsin 4 acts_upstream_of_or_within ISO (MGI:5925970|PMID:26320947) RGD PMID:26320947 MGI:5925970 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Opn5 opsin 5 involved_in ISO (MGI:5699646|PMID:26392540), (MGI:6376341|PMID:31607531), (MGI:6378274|PMID:30240620) RGD PMID:26392540 PMID:30240620 PMID:31607531 MGI:5699646 MGI:6376341 MGI:6378274 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Pde6b phosphodiesterase 6B involved_in ISO (MGI:6378274|PMID:30240620) RGD PMID:30240620 MGI:6378274 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450
JBrowse link
G Per1 period circadian regulator 1 involved_in IBA
ISO
ISS
IEA
PMID:21873635
(MGI:3578039|PMID:15888647)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:15888647 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:3578039, RGD:13792537 NCBI chr10:53,800,126...53,814,963
Ensembl chr10:53,805,535...53,814,431
JBrowse link
G Per2 period circadian regulator 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459
JBrowse link
G Per3 period circadian regulator 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:161,460,228...161,495,404
Ensembl chr 5:161,459,533...161,495,607
JBrowse link
G Pml PML nuclear body scaffold involved_in ISO (MGI:5314433|PMID:22274616) RGD PMID:22274616 MGI:5314433 NCBI chr 8:58,627,347...58,661,927
Ensembl chr 8:58,628,837...58,658,971
JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha involved_in ISS
ISO
GO_REF:0000024
(MGI:5086036|PMID:21712997)
UniProt
RGD
PMID:21712997 GO_REF:0000024 MGI:5086036 NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta involved_in ISS
ISO
GO_REF:0000024
(MGI:5086036|PMID:21712997)
UniProt
RGD
PMID:21712997 GO_REF:0000024 MGI:5086036 NCBI chr 6:23,958,813...23,992,841
Ensembl chr 6:23,960,998...23,992,824
JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma involved_in ISS
ISO
GO_REF:0000024
(MGI:5086036|PMID:21712997)
UniProt
RGD
PMID:21712997 GO_REF:0000024 MGI:5086036 NCBI chr12:34,383,072...34,400,553
Ensembl chr12:34,383,072...34,400,553
JBrowse link
G Rbm4 RNA binding motif protein 4 involved_in ISO (MGI:3703208|PMID:17264215) RGD PMID:17264215 MGI:3703208 NCBI chr 1:202,078,442...202,087,506
Ensembl chr 1:202,085,279...202,105,380
JBrowse link
G Rbm4b RNA binding motif protein 4B involved_in ISS
ISO
GO_REF:0000024
(MGI:3703208|PMID:17264215)
UniProt
RGD
PMID:17264215 GO_REF:0000024 MGI:3703208 NCBI chr 1:202,047,934...202,058,025
Ensembl chr 1:202,047,927...202,058,020
JBrowse link
G Sik1 salt-inducible kinase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5532783|PMID:23993098)
UniProt
RGD
PMID:23993098 GO_REF:0000024 MGI:5532783 NCBI chr20:9,949,407...9,959,036
Ensembl chr20:9,947,396...9,958,991
JBrowse link
G Tp53 tumor protein p53 involved_in ISS
ISO
GO_REF:0000024
(MGI:5613453|PMID:24051492)
UniProt
RGD
PMID:24051492 GO_REF:0000024 MGI:5613453 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Usp2 ubiquitin specific peptidase 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5607210|PMID:23213472)
UniProt
RGD
PMID:23213472 GO_REF:0000024 MGI:5607210 NCBI chr 8:44,411,457...44,439,668
Ensembl chr 8:44,411,607...44,438,331
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19390
    regulation of biological process 12735
      regulation of circadian rhythm 134
        entrainment of circadian clock 34
          entrainment of circadian clock by photoperiod 30
Path 2
Term Annotations click to browse term
  biological_process 19390
    rhythmic process 398
      circadian rhythm 269
        regulation of circadian rhythm 134
          entrainment of circadian clock 34
            entrainment of circadian clock by photoperiod 30
paths to the root