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ONTOLOGY REPORT - ANNOTATIONS

Term:response to biotic stimulus
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Accession:GO:0009607 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.
Comment:Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
Synonyms:synonym: Not4Curation
 narrow_synonym: response to biotic stress

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activation of innate immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aim2 absent in melanoma 2 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936740:1,447,869...1,460,836 JBrowse link
G Casp6 caspase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936563:912,502...920,025 JBrowse link
G Cgas cyclic GMP-AMP synthase involved_in ISO (PMID:23258413)
(MGI:5505711|PMID:23929945), (MGI:5908326|PMID:24077100), (MGI:6119245|PMID:29426904), (MGI:6754862|PMID:32911480), (MGI:6810288|PMID:32911481), (MGI:6828894|PMID:32913000)
(PMID:23929945), (PMID:24077100), (PMID:26046437), (PMID:28363908), (PMID:29426904), (PMID:30007416), (PMID:32817552), (PMID:32911482), (PMID:32912999), (PMID:33542149)
(MGI:5487472|PMID:23258413)		 UniProt PMID:23258413 PMID:23929945 PMID:24077100 PMID:26046437 PMID:28363908 More... MGI:5487472 MGI:5505711 MGI:5908326 MGI:6119245 MGI:6754862 MGI:6810288 MGI:6828894 NCBI chrNW_004936859:797,469...807,036 JBrowse link
G Hexim1 HEXIM P-TEFb complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,458,474...1,463,039 JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:24971542) UniProt PMID:24971542 NCBI chrNW_004936472:25,236,728...25,246,585 JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in ISO (PMID:20628368) UniProt PMID:20628368 NCBI chrNW_004936835:316,767...321,999 JBrowse link
G LOC101961439 twinfilin-2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:3,538,813...3,555,562 JBrowse link
G LOC110596870 RNA-binding protein 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,968,178...2,984,033 JBrowse link
G Matr3 matrin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:8,385,919...8,418,753 JBrowse link
G Mavs mitochondrial antiviral signaling protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:14,842,778...14,859,163 JBrowse link
G Nlrc4 NLR family CARD domain containing 4 involved_in ISO (MGI:3662990|PMID:16648852) UniProt PMID:16648852 MGI:3662990 NCBI chrNW_004936493:1,189,940...1,233,408 JBrowse link
G Nono non-POU domain containing octamer binding involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:322,413...343,126 JBrowse link
G Pqbp1 polyglutamine binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:825,171...830,010 JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,722,914...4,887,615 JBrowse link
G Pspc1 paraspeckle component 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936720:1,876,726...1,941,705 JBrowse link
G Pycard PYD and CARD domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:13,550,702...13,552,774 JBrowse link
G Sfpq splicing factor proline and glutamine rich involved_in ISO (PMID:28712728) UniProt PMID:28712728 NCBI chrNW_004936474:17,776,490...17,791,966 JBrowse link
G Sin3a SIN3 transcription regulator family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:34,206,084...34,260,538 JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936531:8,555,966...8,562,829 JBrowse link
G Tbk1 TANK binding kinase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3530402|PMID:15661922) MGI
Ensembl		 PMID:15661922 GO_REF:0000107 MGI:3530402 NCBI chrNW_004936545:2,763,755...2,809,229 JBrowse link
G Tlr4 toll like receptor 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3530402|PMID:15661922) MGI
Ensembl		 PMID:15661922 GO_REF:0000107 MGI:3530402 NCBI chrNW_004936487:6,519,140...6,532,018 JBrowse link
G Tomm70 translocase of outer mitochondrial membrane 70 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:2,906,573...2,938,837 JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936586:1,055,478...1,137,924 JBrowse link
G Xrcc6 X-ray repair cross complementing 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:303,843...325,812 JBrowse link
G Zbp1 Z-DNA binding protein 1 involved_in ISO (MGI:6434626|PMID:32296175), (MGI:6436412|PMID:32200799)
(MGI:6453154|PMID:32350114), (MGI:6490907|PMID:33109609)		 UniProt PMID:32200799 PMID:32296175 PMID:32350114 PMID:33109609 MGI:6434626 MGI:6436412 MGI:6453154 MGI:6490907 NCBI chrNW_004936530:398,980...408,798 JBrowse link
G Zcchc3 zinc finger CCHC-type containing 3 involved_in ISO (PMID:30135424), (PMID:30193849)
(MGI:6209107|PMID:30135424), (MGI:6271678|PMID:30193849)		 UniProt PMID:30135424 PMID:30193849 MGI:6209107 MGI:6271678 NCBI chrNW_004936670:3,048,914...3,049,809 JBrowse link
G Znfx1 zinc finger NFX1-type containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:4,964,844...4,992,004 JBrowse link
antibacterial humoral response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adm adrenomedullin involved_in ISO (PMID:10225288) UniProt PMID:10225288 NCBI chrNW_004936528:8,005,223...8,007,586 JBrowse link
G Ang angiogenin involved_in ISO (PMID:12548285)
(MGI:2652649|PMID:12548285)		 UniProt PMID:12548285 MGI:2652649 NCBI chrNW_004936880:39,372...40,070 JBrowse link
G B2m beta-2-microglobulin involved_in ISO (PMID:23144825) UniProt PMID:23144825 NCBI chrNW_004936471:7,646,504...7,655,656 JBrowse link
G Bpi bactericidal permeability increasing protein involved_in ISO (PMID:1937776) UniProt PMID:1937776 NCBI chrNW_004936561:3,043,520...3,069,680 JBrowse link
G Defb1 defensin beta 1 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chrNW_004936615:4,780,229...4,790,516 JBrowse link
G Fau FAU ubiquitin like and ribosomal protein S30 fusion involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:4,246,681...4,248,142 JBrowse link
G Jchain joining chain of multimeric IgA and IgM involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936598:4,061,827...4,140,895 JBrowse link
G LOC101959175 amyloid beta precursor protein involved_in ISO (PMID:20209079) UniProt PMID:20209079 RGD:10400853 NCBI chrNW_004936640:1,549,977...1,787,436 JBrowse link
G LOC101959956 cathepsin G-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:34,410...37,097 JBrowse link
G LOC101960095 antileukoproteinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:7,618,382...7,620,790 JBrowse link
G LOC101962700 cathelicidin antimicrobial peptide-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:1,711,313...1,713,213 JBrowse link
G LOC101967584 histone H2B type 2-E involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chrNW_004936580:217,772...220,559 JBrowse link
G LOC101969863 sperm-associated antigen 11B-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937117:109,397...111,539 JBrowse link
G LOC101977899 vasoactive intestinal peptide involved_in ISO (PMID:18603306) UniProt PMID:18603306 NCBI chrNW_004936489:5,425,778...5,434,483 JBrowse link
G LOC106145530 sperm-associated antigen 11-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937117:125,303...128,754 JBrowse link
G Ltf lactotransferrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:344,287...373,788 JBrowse link
G Npy neuropeptide Y involved_in ISO (PMID:18603306) UniProt PMID:18603306 NCBI chrNW_004936478:1,289,437...1,296,819 JBrowse link
G Pla2g1b phospholipase A2 group IB involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936668:608,848...616,982 JBrowse link
G Pla2g6 phospholipase A2 group VI involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:3,011,752...3,060,962 JBrowse link
G Rnase6 ribonuclease A family member k6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936880:78,532...79,342 JBrowse link
G Rpl39 ribosomal protein L39 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chrNW_004936479:10,132,965...10,136,506 JBrowse link
G Tac1 tachykinin precursor 1 involved_in ISO (PMID:18603306) UniProt PMID:18603306 NCBI chrNW_004936585:2,932,783...2,941,141 JBrowse link
antibacterial peptide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lgals4 galectin 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6507238|PMID:27427436) MGI
Ensembl		 PMID:27427436 GO_REF:0000107 MGI:6507238 NCBI chrNW_004936661:1,772,394...1,780,590 JBrowse link
G Mmp7 matrix metallopeptidase 7 acts_upstream_of_or_within ISO (MGI:4838964|PMID:20056603) MGI PMID:20056603 MGI:4838964 NCBI chrNW_004936551:5,388,456...5,395,071 JBrowse link
antibacterial peptide secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmp7 matrix metallopeptidase 7 acts_upstream_of_or_within ISO (MGI:3698376|PMID:11248802) MGI PMID:11248802 MGI:3698376 NCBI chrNW_004936551:5,388,456...5,395,071 JBrowse link
antifungal humoral response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adm adrenomedullin NOT|involved_in ISO (PMID:10225288) UniProt PMID:10225288 NCBI chrNW_004936528:8,005,223...8,007,586 JBrowse link
G Ang angiogenin involved_in ISO (PMID:12548285)
(MGI:2652649|PMID:12548285)		 UniProt PMID:12548285 MGI:2652649 NCBI chrNW_004936880:39,372...40,070 JBrowse link
G Fam3a FAM3 metabolism regulating signaling molecule A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:1,248,865...1,258,894 JBrowse link
G Il36rn interleukin 36 receptor antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,396,720...1,404,416 JBrowse link
G LOC101959175 amyloid beta precursor protein involved_in ISO (PMID:20209079) UniProt PMID:20209079 RGD:10400853 NCBI chrNW_004936640:1,549,977...1,787,436 JBrowse link
G LOC101969863 sperm-associated antigen 11B-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937117:109,397...111,539 JBrowse link
G LOC101977899 vasoactive intestinal peptide involved_in ISO (PMID:18603306) UniProt PMID:18603306 NCBI chrNW_004936489:5,425,778...5,434,483 JBrowse link
G LOC106145530 sperm-associated antigen 11-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937117:125,303...128,754 JBrowse link
G Ltf lactotransferrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:344,287...373,788 JBrowse link
G Npy neuropeptide Y involved_in ISO (PMID:18603306) UniProt PMID:18603306 NCBI chrNW_004936478:1,289,437...1,296,819 JBrowse link
G Rarres2 retinoic acid receptor responder 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:5,949,161...5,952,367 JBrowse link
G Tac1 tachykinin precursor 1 involved_in ISO (PMID:18603306) UniProt PMID:18603306 NCBI chrNW_004936585:2,932,783...2,941,141 JBrowse link
antifungal innate immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl10 BCL10 immune signaling adaptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936608:434,740...442,162 JBrowse link
G Card9 caspase recruitment domain family member 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:1,428,208...1,438,012 JBrowse link
G Clec4d C-type lectin domain family 4 member D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936858:303,639...312,092 JBrowse link
G Clec4e C-type lectin domain family 4 member E involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936858:316,954...321,668 JBrowse link
G Cx3cr1 C-X3-C motif chemokine receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:28,508,726...28,535,640 JBrowse link
G Defb114 defensin beta 114 involved_in ISO (PMID:23482568) UniProt PMID:23482568 NCBI chrNW_004936476:10,651,162...10,657,785 JBrowse link
G LOC101955647 beta-defensin 121 involved_in ISO (PMID:24449502) UniProt PMID:24449502 NCBI chrNW_004936485:18,426,481...18,427,866 JBrowse link
G Plcg2 phospholipase C gamma 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:29,248,533...29,377,335 JBrowse link
G Rarres2 retinoic acid receptor responder 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:5,949,161...5,952,367 JBrowse link
antimicrobial humoral immune response mediated by antimicrobial peptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adm adrenomedullin involved_in ISO (PMID:10225288) UniProt PMID:10225288 NCBI chrNW_004936528:8,005,223...8,007,586 JBrowse link
G Ang angiogenin involved_in ISO (PMID:12548285)
(MGI:2652649|PMID:12548285)		 UniProt PMID:12548285 MGI:2652649 NCBI chrNW_004936880:39,372...40,070 JBrowse link
G B2m beta-2-microglobulin involved_in ISO (PMID:23144825) UniProt PMID:23144825 NCBI chrNW_004936471:7,646,504...7,655,656 JBrowse link
G Bpi bactericidal permeability increasing protein involved_in ISO (PMID:1937776) UniProt PMID:1937776 NCBI chrNW_004936561:3,043,520...3,069,680 JBrowse link
G Calca calcitonin related polypeptide alpha involved_in ISO (PMID:18603306) UniProt PMID:18603306 NCBI chrNW_004936528:3,800,801...3,806,000 JBrowse link
G Ccl1 C-C motif chemokine ligand 1 involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936538:781,687...784,199 JBrowse link
G Ccl17 C-C motif chemokine ligand 17 involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936475:9,475,013...9,476,326 JBrowse link
G Ccl19 C-C motif chemokine ligand 19 involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936524:2,765,271...2,767,259 JBrowse link
G Ccl20 C-C motif chemokine ligand 20 involved_in ISO (PMID:12949249), (PMID:19109182) UniProt PMID:12949249 PMID:19109182 NCBI chrNW_004936525:8,238,128...8,240,974 JBrowse link
G Ccl21 C-C motif chemokine ligand 21 involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936524:2,787,963...2,789,116 JBrowse link
G Ccl22 C-C motif chemokine ligand 22 involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936475:9,432,505...9,436,240 JBrowse link
G Ccl25 C-C motif chemokine ligand 25 involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936588:4,973,476...4,998,365 JBrowse link
G Ccl27 C-C motif chemokine ligand 27 involved_in ISO (PMID:19109182) UniProt PMID:19109182 NCBI chrNW_004936524:2,743,106...2,743,759 JBrowse link
G Ccl28 C-C motif chemokine ligand 28 involved_in ISO (PMID:12538707)
(MGI:5897759|PMID:12538707)		 UniProt PMID:12538707 MGI:5897759 NCBI chrNW_004936480:18,819,012...18,824,981 JBrowse link
G Ccl8 C-C motif chemokine ligand 8 involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936538:805,273...806,715 JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936676:60,869...63,028 JBrowse link
G Cxcl11 C-X-C motif chemokine ligand 11 involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936676:72,383...73,697 JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936617:4,224,131...4,239,080 JBrowse link
G Cxcl13 C-X-C motif chemokine ligand 13 involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936676:1,309,625...1,314,532 JBrowse link
G Cxcl14 C-X-C motif chemokine ligand 14 involved_in ISO (PMID:12949249), (PMID:19109182)
(MGI:3822386|PMID:19109182)		 UniProt PMID:12949249 PMID:19109182 MGI:3822386 NCBI chrNW_004936597:2,746,415...2,754,169 JBrowse link
G Cxcl9 C-X-C motif chemokine ligand 9 involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936676:33,580...40,323 JBrowse link
G Defb1 defensin beta 1 involved_in ISO (PMID:12860195)
(PMID:25122636)		 UniProt PMID:12860195 PMID:25122636 NCBI chrNW_004936615:4,780,229...4,790,516 JBrowse link
G Defb127 defensin beta 127 involved_in ISO (PMID:19373462) UniProt PMID:19373462 NCBI chrNW_004936485:18,255,550...18,257,277 JBrowse link
G Defb130b defensin beta 130B involved_in ISO (PMID:28181499) UniProt PMID:28181499 NCBI chrNW_004937117:30,234...38,633 JBrowse link
G F2 coagulation factor II, thrombin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:2,371,725...2,388,617 JBrowse link
G Fam3a FAM3 metabolism regulating signaling molecule A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:1,248,865...1,258,894 JBrowse link
G Fau FAU ubiquitin like and ribosomal protein S30 fusion involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:4,246,681...4,248,142 JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase involved_in ISO (PMID:22832495) UniProt PMID:22832495 NCBI chrNW_004936709:1,243,149...1,247,782 JBrowse link
G Hrg histidine rich glycoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:3,285,986...3,295,876 JBrowse link
G Kng1 kininogen 1 involved_in ISO (PMID:12074933) UniProt PMID:12074933 NCBI chrNW_004936578:3,255,335...3,281,296 JBrowse link
G Krt6a keratin 6A involved_in ISO (PMID:23006328)
(MGI:5466437|PMID:23006328)		 UniProt PMID:23006328 MGI:5466437 NCBI chrNW_004936512:9,903,206...9,908,009 JBrowse link
G Leap2 liver enriched antimicrobial peptide 2 involved_in ISO (PMID:12493837) UniProt PMID:12493837 NCBI chrNW_004936647:2,343,149...2,345,616 JBrowse link
G Lgals3 galectin 3 involved_in ISO (PMID:16982911) UniProt PMID:16982911 NCBI chrNW_004936697:20,861...38,568 JBrowse link
G LOC101958191 thymic stromal lymphopoietin involved_in ISO (PMID:24850429) UniProt PMID:24850429 NCBI chrNW_004936531:5,495,872...5,500,462 JBrowse link
G LOC101959175 amyloid beta precursor protein involved_in ISO (PMID:20209079) UniProt PMID:20209079 RGD:10400853 NCBI chrNW_004936640:1,549,977...1,787,436 JBrowse link
G LOC101959402 deleted in malignant brain tumors 1 protein involved_in ISO (PMID:11007786)
(PMID:19189310)		 UniProt PMID:11007786 PMID:19189310 NCBI chrNW_004936486:11,377,485...11,545,624 JBrowse link
G LOC101962700 cathelicidin antimicrobial peptide-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:1,711,313...1,713,213 JBrowse link
G LOC101963795 60S ribosomal protein L30 involved_in ISO (PMID:15019208) UniProt PMID:15019208 NCBI chrNW_004936493:7,942,669...7,943,133 JBrowse link
G LOC101964687 pro-platelet basic protein involved_in ISO (PMID:10877842) UniProt PMID:10877842 NCBI chrNW_004936598:1,719,501...1,720,890 JBrowse link
G LOC101964975 interleukin-8 involved_in ISO (PMID:19109182) UniProt PMID:19109182 NCBI chrNW_004936598:1,779,471...1,781,353 JBrowse link
G LOC101967584 histone H2B type 2-E involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chrNW_004936580:217,772...220,559 JBrowse link
G LOC101968920 eotaxin involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936538:835,436...848,907 JBrowse link
G LOC101970371 peptidoglycan recognition protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,184,904...3,197,203 JBrowse link
G LOC101970885 lymphotactin involved_in ISO (PMID:12949249) UniProt PMID:12949249 NCBI chrNW_004936481:17,825,714...17,828,955 JBrowse link
G LOC101970943 protein S100-A12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,244,756...3,246,223 JBrowse link
G LOC101972117 hepcidin antimicrobial peptide involved_in ISO (PMID:11034317), (PMID:11113131) UniProt PMID:11034317 PMID:11113131 NCBI chrNW_004936570:1,009,344...1,010,654 JBrowse link
G LOC101974774 peptidoglycan recognition protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,206,557...3,214,790 JBrowse link
G LOC101977899 vasoactive intestinal peptide involved_in ISO (PMID:18603306) UniProt PMID:18603306 NCBI chrNW_004936489:5,425,778...5,434,483 JBrowse link
G Ltf lactotransferrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:344,287...373,788 JBrowse link
G Muc7 mucin 7, secreted involved_in ISO (PMID:12543672) UniProt PMID:12543672
G Nppb natriuretic peptide B involved_in ISO (PMID:11410403) UniProt PMID:11410403 NCBI chrNW_004936474:683,325...684,662 JBrowse link
G Npy neuropeptide Y involved_in ISO (PMID:18603306)
(PMID:9756788)		 UniProt PMID:9756788 PMID:18603306 NCBI chrNW_004936478:1,289,437...1,296,819 JBrowse link
G Nts neurotensin involved_in ISO (PMID:12074933) UniProt PMID:12074933 NCBI chrNW_004936507:3,318,982...3,329,248 JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:2,317,137...2,320,993 JBrowse link
G Pla2g1b phospholipase A2 group IB involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936668:608,848...616,982 JBrowse link
G Pomc proopiomelanocortin involved_in ISO (PMID:10670585) UniProt PMID:10670585 NCBI chrNW_004936493:7,060,747...7,065,276 JBrowse link
G Reg3g regenerating family member 3 gamma involved_in ISO (PMID:16931762)
(MGI:5897756|PMID:16931762)		 UniProt PMID:16931762 MGI:5897756 NCBI chrNW_004936556:4,896,141...4,898,240 JBrowse link
G Rnase6 ribonuclease A family member k6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936880:78,532...79,342 JBrowse link
G Romo1 reactive oxygen species modulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:5,134,068...5,135,734 JBrowse link
G Rpl39 ribosomal protein L39 involved_in ISO (PMID:12860195) UniProt PMID:12860195 NCBI chrNW_004936479:10,132,965...10,136,506 JBrowse link
G Rps19 ribosomal protein S19 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:568,443...575,973 JBrowse link
G S100a9 S100 calcium binding protein A9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,228,097...3,230,652 JBrowse link
G Tac1 tachykinin precursor 1 involved_in ISO (PMID:12074933), (PMID:18603306)
(PMID:18603306)		 UniProt PMID:12074933 PMID:18603306 NCBI chrNW_004936585:2,932,783...2,941,141 JBrowse link
antimicrobial humoral response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl3 BCL3 transcription coactivator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:85481|PMID:9009202) MGI
Ensembl		 PMID:9009202 GO_REF:0000107 MGI:85481 NCBI chrNW_004936706:1,410,848...1,427,822 JBrowse link
G Colec11 collectin subfamily member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:1,757,288...1,776,053 JBrowse link
antiviral innate immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap1 A-kinase anchoring protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:5,829,728...5,842,217 JBrowse link
G Clpb caseinolytic mitochondrial matrix peptidase chaperone subunit B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:1,590,655...1,730,815 JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936676:60,869...63,028 JBrowse link
G Ddx58 DExD/H-box helicase 58 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:1,141,840...1,200,638 JBrowse link
G Dhx15 DEAH-box helicase 15 involved_in ISO (PMID:24990078)
(MGI:5699624|PMID:26494172)
(MGI:6833928|PMID:34678144)		 UniProt PMID:24990078 PMID:26494172 PMID:34678144 MGI:5699624 MGI:6833928 NCBI chrNW_004936477:4,797,345...4,844,804 JBrowse link
G LOC101971789 interferon-induced GTP-binding protein Mx1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:2,332,140...2,353,650 JBrowse link
G LOC101976400 ATPase family AAA domain-containing protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936737:1,711,972...1,731,163 JBrowse link
G Nlrp1 NLR family pyrin domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:2,248,153...2,290,802 JBrowse link
G Nlrp6 NLR family pyrin domain containing 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936888:145,642...151,716 JBrowse link
G Nmb neuromedin B involved_in ISO (MGI:6435299|PMID:31601264) UniProt PMID:31601264 MGI:6435299 NCBI chrNW_004936483:16,712,382...16,715,397 JBrowse link
G Nmbr neuromedin B receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936625:3,872,786...3,883,478 JBrowse link
G Phb1 prohibitin 1 involved_in ISO (PMID:31522117) UniProt PMID:31522117 NCBI chrNW_004936490:12,127,065...12,138,870 JBrowse link
G Phb2 prohibitin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:854,493...859,182 JBrowse link
G Rnf135 ring finger protein 135 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:2,741,308...2,757,042 JBrowse link
G Senp7 SUMO specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:1,840,761...1,978,500 JBrowse link
G Zdhhc1 zinc finger DHHC-type containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,849,772...17,869,140 JBrowse link
biosynthetic process of antibacterial peptides active against Gram-negative bacteria term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101961846 neutrophil elastase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:345,678...347,420 JBrowse link
biosynthetic process of antibacterial peptides active against Gram-positive bacteria term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nod2 nucleotide binding oligomerization domain containing 2 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:3528786|PMID:15692051) MGI
Ensembl		 PMID:15692051 GO_REF:0000107 MGI:3528786 NCBI chrNW_004936475:3,708,069...3,742,845 JBrowse link
cell surface pattern recognition receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec7a C-type lectin domain containing 7A acts_upstream_of_or_within ISO (MGI:3042099|PMID:12719478) MGI PMID:12719478 MGI:3042099 NCBI chrNW_004936902:436,224...446,435 JBrowse link
G LOC101965964 ficolin-1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:2,421,092...2,428,240 JBrowse link
G LOC101971238 free fatty acid receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936570:895,364...896,356 JBrowse link
G Masp1 MBL associated serine protease 1 involved_in ISO (PMID:22966085) ComplexPortal PMID:22966085 NCBI chrNW_004936578:2,804,460...2,857,731 JBrowse link
G Masp2 MBL associated serine protease 2 involved_in ISO (PMID:22966085) ComplexPortal PMID:22966085 NCBI chrNW_004936474:100,584...113,781 JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of_or_within ISO (MGI:3042099|PMID:12719478) MGI PMID:12719478 MGI:3042099 NCBI chrNW_004936576:522,234...531,660 JBrowse link
cellular response to bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd36 CD36 molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3528769|PMID:15690042) Ensembl
MGI		 PMID:15690042 GO_REF:0000107 MGI:3528769 NCBI chrNW_004936810:791,823...838,303 JBrowse link
G LOC101967682 TIR domain containing adaptor protein acts_upstream_of_or_within ISO (MGI:3528769|PMID:15690042) MGI PMID:15690042 MGI:3528769 NCBI chrNW_004936572:5,926,193...5,938,621 JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of_or_within ISO (MGI:3528769|PMID:15690042) MGI PMID:15690042 MGI:3528769 NCBI chrNW_004936576:522,234...531,660 JBrowse link
cellular response to diacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd14 CD14 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:9,572,392...9,575,771 JBrowse link
G Cd36 CD36 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936810:791,823...838,303 JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19931471) MGI
Ensembl		 PMID:19931471 GO_REF:0000107 NCBI chrNW_004936576:522,234...531,660 JBrowse link
G Tlr6 toll like receptor 6 acts_upstream_of_or_within
involved_in		 ISO (PMID:19931471)
(PMID:16880211)		 MGI
UniProt		 PMID:16880211 PMID:19931471 NCBI chrNW_004936482:6,607,723...6,610,161 JBrowse link
cellular response to external biotic stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1 ATP binding cassette subfamily B member 1 ISO RGD PMID:16353156 RGD:2316359 NCBI chrNW_004936763:1,225,355...1,308,257 JBrowse link
G Cda cytidine deaminase ISO K-selection - confluent culture RGD PMID:16353156 RGD:2316359 NCBI chrNW_004936474:6,543,295...6,564,575 JBrowse link
cellular response to interferon-gamma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acod1 aconitate decarboxylase 1 involved_in ISO (MGI:5489057|PMID:19014335) UniProt PMID:19014335 MGI:5489057 NCBI chrNW_004936511:4,322,198...4,326,562 JBrowse link
G Actg1 actin gamma 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936594:5,170,711...5,173,251 JBrowse link
G Actr2 actin related protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936491:9,980,228...10,021,417 JBrowse link
G Actr3 actin related protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936469:55,639,345...55,699,330 JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif 13 ISO RGD PMID:18433458 RGD:2315954 NCBI chrNW_004936669:3,449,259...3,478,471 JBrowse link
G Aif1 allograft inflammatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,907,493...1,909,350 JBrowse link
G Aqp4 aquaporin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936550:5,931,201...5,943,999 JBrowse link
G Arg2 arginase 2 ISO RGD PMID:11250887 RGD:4144048 NCBI chrNW_004936495:11,004,296...11,045,467 JBrowse link
G Asl argininosuccinate lyase ISO with TNFalpha RGD PMID:11072090 RGD:4139899 NCBI chrNW_004936543:7,688,788...7,699,842 JBrowse link
G Ass1 argininosuccinate synthase 1 ISO with TNFalpha RGD PMID:11072090 PMID:12589771 RGD:1599307 RGD:4139899 NCBI chrNW_004936487:17,482,307...17,527,407 JBrowse link
G Atl3 atlastin GTPase 3 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936599:5,442,060...5,503,298 JBrowse link
G Capg capping actin protein, gelsolin like acts_upstream_of_or_within ISO (MGI:3828867|PMID:19144319) MGI PMID:19144319 MGI:3828867 NCBI chrNW_004936712:1,793,666...1,803,621 JBrowse link
G Ccl5 C-C motif chemokine ligand 5 involved_in ISO (PMID:9407497) UniProt PMID:9407497 NCBI chrNW_004936490:253,279...259,947 JBrowse link
G Cdc42 cell division cycle 42 acts_upstream_of_or_within ISO (MGI:3828867|PMID:19144319) MGI PMID:19144319 MGI:3828867 NCBI chrNW_004936474:7,556,765...7,598,687 JBrowse link
G Cdc42ep4 CDC42 effector protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936655:943,754...963,018 JBrowse link
G Ciita class II major histocompatibility complex transactivator ISO RGD PMID:11071855 RGD:632488 NCBI chrNW_004936530:9,033,510...9,073,341 JBrowse link
G Cldn1 claudin 1 ISO RGD PMID:18768927 RGD:11344890 NCBI chrNW_004936578:98,489...113,125 JBrowse link
G Dapk1 death associated protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936680:2,842,930...3,020,757 JBrowse link
G Dapk3 death associated protein kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,246,142...2,257,733 JBrowse link
G Daxx death domain associated protein ISO RGD PMID:21572393 RGD:9587767 NCBI chrNW_004936476:25,546,091...25,550,390 JBrowse link
G Edn1 endothelin 1 ISO RGD PMID:22301113 RGD:8662301 NCBI chrNW_004936534:885,489...892,292 JBrowse link
G Eprs1 glutamyl-prolyl-tRNA synthetase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5466658|PMID:23071094) MGI
Ensembl		 PMID:23071094 GO_REF:0000107 MGI:5466658 NCBI chrNW_004936650:2,145,614...2,219,812 JBrowse link
G Evl Enah/Vasp-like acts_upstream_of_or_within ISO (MGI:3828867|PMID:19144319) MGI PMID:19144319 MGI:3828867 NCBI chrNW_004936604:3,720,038...3,819,928 JBrowse link
G Fas Fas cell surface death receptor ISO RGD PMID:10029626 RGD:14700709 NCBI chrNW_004936735:209,369...234,582 JBrowse link
G Faslg Fas ligand ISO RGD PMID:10029626 RGD:14700709 NCBI chrNW_004936481:14,789,547...14,795,780 JBrowse link
G Flnb filamin B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936473:8,268,326...8,413,955 JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase involved_in ISO (PMID:15479637) UniProt PMID:15479637 NCBI chrNW_004936709:1,243,149...1,247,782 JBrowse link
G Gsn gelsolin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936487:9,749,755...9,802,787 JBrowse link
G Icam1 intercellular adhesion molecule 1 ISO RGD PMID:7865494 RGD:11520781 NCBI chrNW_004936659:616,570...627,172 JBrowse link
G Il12b interleukin 12B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4412460|PMID:18025219) MGI
Ensembl		 PMID:18025219 GO_REF:0000107 MGI:4412460 NCBI chrNW_004936515:4,056,214...4,066,121 JBrowse link
G Il12rb1 interleukin 12 receptor subunit beta 1 involved_in ISO (PMID:12023369) BHF-UCL PMID:12023369 NCBI chrNW_004936596:3,062,620...3,076,349 JBrowse link
G Il18 interleukin 18 ISO RGD PMID:18547159 RGD:4889457 NCBI chrNW_004936612:2,306,963...2,325,086 JBrowse link
G Irf8 interferon regulatory factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:2,608,109...2,622,446 JBrowse link
G Kif16b kinesin family member 16B acts_upstream_of_or_within ISO (MGI:3828867|PMID:19144319) MGI PMID:19144319 MGI:3828867 NCBI chrNW_004936485:3,443,878...3,728,613 JBrowse link
G Kif5b kinesin family member 5B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936574:780,074...823,858 JBrowse link
G Lgals9 galectin 9 involved_in ISO (PMID:23817958) UniProt PMID:23817958 NCBI chrNW_004936538:4,034,467...4,050,240 JBrowse link
G LOC101957863 guanylate-binding protein 1-like involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936732:52,642...67,706 JBrowse link
G LOC101958908 HLA class II histocompatibility antigen, DP alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:25,743,512...25,750,809 JBrowse link
G LOC101961426 guanylate-binding protein 5 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936991:83,446...95,310 JBrowse link
G LOC101962564 guanylate-binding protein 4 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936991:322,048...343,758 JBrowse link
G LOC101967799 leukocyte surface antigen CD47 involved_in ISO PMID:12023387 ARUK-UCL PMID:12023387 RGD:625650 NCBI chrNW_004936645:1,363,406...1,408,624 JBrowse link
G LOC101968779 HLA class II histocompatibility antigen, DQ beta 1 chain-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:361,446...368,507 JBrowse link
G LOC101969104 synaptotagmin binding cytoplasmic RNA interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936510:5,643,072...5,672,258 JBrowse link
G LOC101972667 immunity related GTPase M acts_upstream_of_or_within ISO (MGI:3828867|PMID:19144319) MGI PMID:19144319 MGI:3828867 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G Mrc1 mannose receptor C-type 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5486412|PMID:22832163) MGI
Ensembl		 PMID:22832163 GO_REF:0000107 MGI:5486412 NCBI chrNW_004936520:9,463,007...9,547,321 JBrowse link
G Mst1 macrophage stimulating 1 ISO RGD PMID:21572393 RGD:9587767 NCBI chrNW_004936529:1,298,853...1,306,088 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:7524476 RGD:10059620 NCBI chrNW_004936470:20,480,844...20,485,955 JBrowse link
G Myo18a myosin XVIIIA acts_upstream_of_or_within ISO (MGI:3828867|PMID:19144319) MGI PMID:19144319 MGI:3828867 NCBI chrNW_004936538:5,257,165...5,351,757 JBrowse link
G Myo1c myosin IC acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936538:7,614,985...7,639,603 JBrowse link
G Nos2 nitric oxide synthase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4412460|PMID:18025219) MGI
Ensembl		 PMID:18025219 GO_REF:0000107 MGI:4412460 NCBI chrNW_004936538:4,052,277...4,097,051 JBrowse link
G Pde12 phosphodiesterase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:7,894,026...7,897,844 JBrowse link
G Pecam1 platelet and endothelial cell adhesion molecule 1 ISO RGD PMID:18466611 RGD:2311658 NCBI chrNW_004936541:4,873,459...4,919,787 JBrowse link
G Rab11fip5 RAB11 family interacting protein 5 acts_upstream_of_or_within ISO (MGI:3828867|PMID:19144319) MGI PMID:19144319 MGI:3828867 NCBI chrNW_004936491:16,883,972...16,919,539 JBrowse link
G Rab12 RAB12, member RAS oncogene family acts_upstream_of_or_within ISO (MGI:3828867|PMID:19144319) MGI PMID:19144319 MGI:3828867 NCBI chrNW_004936670:2,315,930...2,338,489 JBrowse link
G Rab20 RAB20, member RAS oncogene family acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936472:2,234,826...2,264,613 JBrowse link
G Rab43 RAB43, member RAS oncogene family acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936798:176,772...180,387 JBrowse link
G Rab7b RAB7B, member RAS oncogene family acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936557:6,504,562...6,519,219 JBrowse link
G Rpl13a ribosomal protein L13a involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,352,535...3,356,196 JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:3,441,046...3,492,917 JBrowse link
G Sirpa signal regulatory protein alpha involved_in ISO PMID:12023387 ARUK-UCL PMID:12023387 RGD:625650 NCBI chrNW_004936485:16,608,317...16,654,552 JBrowse link
G Slc26a6 solute carrier family 26 member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:425,839...435,590 JBrowse link
G Socs1 suppressor of cytokine signaling 1 ISO RGD PMID:10707961 RGD:151232287 NCBI chrNW_004936530:9,312,965...9,315,593 JBrowse link
G Socs3 suppressor of cytokine signaling 3 ISO RGD PMID:10707961 RGD:151232287 NCBI chrNW_004936594:2,932,297...2,935,358 JBrowse link
G Star steroidogenic acute regulatory protein ISO RGD PMID:9564825 RGD:4891971 NCBI chrNW_004936710:1,523,289...1,530,181 JBrowse link
G Stat1 signal transducer and activator of transcription 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936506:7,196,860...7,235,854 JBrowse link
G Stx4 syntaxin 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936501:13,401,095...13,408,316 JBrowse link
G Stx8 syntaxin 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936595:2,328,763...2,578,788 JBrowse link
G Stxbp1 syntaxin binding protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936487:15,300,758...15,367,475 JBrowse link
G Stxbp2 syntaxin binding protein 2 acts_upstream_of_or_within ISO (MGI:3828867|PMID:19144319) MGI PMID:19144319 MGI:3828867 NCBI chrNW_004936588:4,688,221...4,696,075 JBrowse link
G Stxbp3 syntaxin binding protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936704:330,195...396,913 JBrowse link
G Stxbp4 syntaxin binding protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936490:7,406,130...7,553,389 JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 involved_in ISO (PMID:17720976) UniProt PMID:17720976 NCBI chrNW_004936596:451,483...453,892 JBrowse link
G Tlr2 toll like receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936576:522,234...531,660 JBrowse link
G Tlr3 toll like receptor 3 NOT ISO intestinal epithelial cells
thyrocytes		 RGD PMID:15661832 PMID:16638093 RGD:5128794 RGD:5128798 NCBI chrNW_004936554:3,370,766...3,388,125 JBrowse link
G Tlr4 toll like receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:6,519,140...6,532,018 JBrowse link
G Tnf tumor necrosis factor ISO RGD PMID:16525716 RGD:14985246 NCBI chrNW_004936727:1,936,066...1,937,766 JBrowse link
G Vamp3 vesicle associated membrane protein 3 acts_upstream_of_or_within ISO (MGI:3828867|PMID:19144319) MGI PMID:19144319 MGI:3828867 NCBI chrNW_004936623:2,280,534...2,287,898 JBrowse link
G Vamp4 vesicle associated membrane protein 4 acts_upstream_of_or_within ISO (MGI:3828867|PMID:19144319) MGI PMID:19144319 MGI:3828867 NCBI chrNW_004936481:15,480,865...15,515,851 JBrowse link
G Vamp8 vesicle associated membrane protein 8 acts_upstream_of_or_within ISO (MGI:3828867|PMID:19144319) MGI PMID:19144319 MGI:3828867 NCBI chrNW_004936712:1,688,126...1,689,742 JBrowse link
G Vim vimentin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936520:10,051,692...10,059,324 JBrowse link
G Vps26b VPS26, retromer complex component B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936684:1,597,706...1,617,689 JBrowse link
G Was WASP actin nucleation promoting factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936721:634,685...641,248 JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211 JBrowse link
G Zyx zyxin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828867|PMID:19144319) MGI
Ensembl		 PMID:19144319 GO_REF:0000107 MGI:3828867 NCBI chrNW_004936527:823,973...833,387 JBrowse link
cellular response to lectin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:2200903 RGD:10059628 NCBI chrNW_004936470:20,480,844...20,485,955 JBrowse link
G Plcg2 phospholipase C gamma 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:29,248,533...29,377,335 JBrowse link
G Syk spleen associated tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936780:1,553,605...1,601,036 JBrowse link
cellular response to lipopolysaccharide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:7,177,887...7,312,660 JBrowse link
G Abcb1 ATP binding cassette subfamily B member 1 ISO RGD PMID:20300455 RGD:39456124 NCBI chrNW_004936763:1,225,355...1,308,257 JBrowse link
G Abcc2 ATP binding cassette subfamily C member 2 ISO RGD PMID:20702406 RGD:11081005 NCBI chrNW_004936636:292,631...341,999 JBrowse link
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:82358|PMID:8806812) MGI
Ensembl		 PMID:8806812 GO_REF:0000107 MGI:82358 NCBI chrNW_004936487:17,690,206...17,819,619 JBrowse link
G Acod1 aconitate decarboxylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936511:4,322,198...4,326,562 JBrowse link
G Adam9 ADAM metallopeptidase domain 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936710:2,301,470...2,388,533 JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif 13 ISO RGD PMID:22871409 RGD:7207038 NCBI chrNW_004936669:3,449,259...3,478,471 JBrowse link
G Aicda activation induced cytidine deaminase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3817382|PMID:18762567) MGI
Ensembl		 PMID:18762567 GO_REF:0000107 MGI:3817382 NCBI chrNW_004936870:25,039...34,601 JBrowse link
G Akap8 A-kinase anchoring protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:5,123,988...5,142,326 JBrowse link
G Ankrd1 ankyrin repeat domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:3,502,844...3,510,919 JBrowse link
G Arg2 arginase 2 ISO RGD PMID:11250887 RGD:4144048 NCBI chrNW_004936495:11,004,296...11,045,467 JBrowse link
G Arid5a AT-rich interaction domain 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936744:539,150...545,021 JBrowse link
G Ass1 argininosuccinate synthase 1 ISO alveolar macrophages RGD PMID:9879717 RGD:4139906 NCBI chrNW_004936487:17,482,307...17,527,407 JBrowse link
G Axl AXL receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:3,658,140...3,687,290 JBrowse link
G B2m beta-2-microglobulin involved_in ISO (PMID:23144825) UniProt PMID:23144825 NCBI chrNW_004936471:7,646,504...7,655,656 JBrowse link
G Bcl10 BCL10 immune signaling adaptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936608:434,740...442,162 JBrowse link
G Bcr BCR activator of RhoGEF and GTPase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:71493|PMID:7889565) MGI
Ensembl		 PMID:7889565 GO_REF:0000107 MGI:71493 NCBI chrNW_004936619:288,377...432,297 JBrowse link
G Bpi bactericidal permeability increasing protein involved_in ISO (PMID:1937776) UniProt PMID:1937776 NCBI chrNW_004936561:3,043,520...3,069,680 JBrowse link
G Bysl bystin like ISO RGD PMID:15305856 RGD:2316201 NCBI chrNW_004936476:17,887,998...17,896,598 JBrowse link
G Cactin cactin, spliceosome C complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,051,636...2,061,651 JBrowse link
G Capn2 calpain 2 ISO RGD PMID:23390485 RGD:13792657 NCBI chrNW_004936526:879,765...932,682 JBrowse link
G Ccl20 C-C motif chemokine ligand 20 ISO RGD PMID:15618187 RGD:7483631 NCBI chrNW_004936525:8,238,128...8,240,974 JBrowse link
G Ccl5 C-C motif chemokine ligand 5 ISO RGD PMID:20578038 RGD:4889899 NCBI chrNW_004936490:253,279...259,947 JBrowse link
G Cd14 CD14 molecule involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:12594207) RGD
Ensembl
MGI		 PMID:12594207 PMID:22511970 GO_REF:0000107 RGD:7183752 NCBI chrNW_004936531:9,572,392...9,575,771 JBrowse link
G Cd180 CD180 molecule acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1860539|PMID:10880523) MGI
Ensembl		 PMID:10880523 GO_REF:0000107 MGI:1860539 NCBI chrNW_004936480:2,105,179...2,119,137 JBrowse link
G Cd36 CD36 molecule acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3587138|PMID:16061696) MGI
Ensembl		 PMID:16061696 GO_REF:0000107 MGI:3587138 NCBI chrNW_004936810:791,823...838,303 JBrowse link
G Cd40 CD40 molecule ISO RGD PMID:19271152 RGD:5491178 NCBI chrNW_004936514:6,936,915...6,947,246 JBrowse link
G Cd68 CD68 molecule involved_in ISO (MGI:6274946|PMID:16157452) ARUK-UCL PMID:16157452 MGI:6274946 NCBI chrNW_004936595:858,289...861,131 JBrowse link
G Cd80 CD80 molecule acts_upstream_of_or_within ISO (MGI:3828894|PMID:19047410) MGI PMID:19047410 MGI:3828894 NCBI chrNW_004936536:6,462,080...6,483,450 JBrowse link
G Cd86 CD86 molecule acts_upstream_of_or_within ISO (MGI:3828894|PMID:19047410) RGD
MGI		 PMID:19047410 PMID:21039614 MGI:3828894 RGD:4892198 NCBI chrNW_004936536:8,414,491...8,481,712 JBrowse link
G Cdc73 cell division cycle 73 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936638:1,365,457...1,482,497 JBrowse link
G Cdk19 cyclin dependent kinase 19 ISO RGD PMID:20066559 RGD:9590278 NCBI chrNW_004936564:6,443,041...6,584,767 JBrowse link
G Cdk4 cyclin dependent kinase 4 acts_upstream_of_or_within ISO (MGI:78049|PMID:8543804) MGI PMID:8543804 MGI:78049 NCBI chrNW_004936646:1,886,262...1,889,260 JBrowse link
G Cebpe CCAAT enhancer binding protein epsilon ISO RGD PMID:9593684 RGD:728287 NCBI chrNW_004936722:1,207,718...1,209,482 JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO (PMID:27812135) UniProt PMID:27812135 NCBI chrNW_004936524:1,804,643...1,820,491 JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:73245|PMID:7751651) MGI
Ensembl		 PMID:7751651 GO_REF:0000107 MGI:73245 NCBI chrNW_004936532:3,896,654...3,908,184 JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 ISO RGD PMID:21620800 RGD:9685153 NCBI chrNW_004936483:17,216,288...17,296,430 JBrowse link
G Csf2 colony stimulating factor 2 ISO RGD PMID:18387647 RGD:5131517 NCBI chrNW_004936647:3,081,896...3,083,864 JBrowse link
G Csf3 colony stimulating factor 3 ISO RGD PMID:19732808 RGD:5133735 NCBI chrNW_004936490:15,142,526...15,146,375 JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:7,585,937...7,613,022 JBrowse link
G Cx3cr1 C-X3-C motif chemokine receptor 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:10422773 GO_REF:0000107 RGD:4892028 NCBI chrNW_004936473:28,508,726...28,535,640 JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23776175) MGI
Ensembl		 PMID:23776175 GO_REF:0000107 NCBI chrNW_004936676:60,869...63,028 JBrowse link
G Cxcl16 C-X-C motif chemokine ligand 16 involved_in ISO (MGI:1891794|PMID:11017100) UniProt PMID:11017100 MGI:1891794 NCBI chrNW_004936677:3,157,173...3,162,599 JBrowse link
G Ednrb endothelin receptor type B ISO RGD PMID:18091567 RGD:4892289 NCBI chrNW_004936511:3,446,864...3,478,434 JBrowse link
G Efnb2 ephrin B2 ISO RGD PMID:33794069 RGD:127285659 NCBI chrNW_004936472:5,138,751...5,181,630 JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 ISO RGD PMID:23990338 RGD:9685490 NCBI chrNW_004936669:901,192...906,765 JBrowse link
G Epas1 endothelial PAS domain protein 1 ISO RGD PMID:12099714 RGD:11041576 NCBI chrNW_004936508:5,855,748...5,938,879 JBrowse link
G Ephb2 EPH receptor B2 ISO RGD PMID:33794069 RGD:127285659 NCBI chrNW_004936474:8,109,800...8,203,106 JBrowse link
G Fcgr2b Fc fragment of IgG receptor IIb ISO RGD PMID:19106808 RGD:5147925 NCBI chrNW_004937131:80,014...96,114 JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 ISO RGD PMID:30250515 RGD:25330356 NCBI chrNW_004936710:1,760,365...1,815,269 JBrowse link
G Fn1 fibronectin 1 ISO RGD PMID:11819312 RGD:7205475 NCBI chrNW_004936586:1,708,803...1,773,372 JBrowse link
G Fubp1 far upstream element binding protein 1 ISO RGD PMID:23797733 RGD:13673879 NCBI chrNW_004936571:4,729,135...4,760,943 JBrowse link
G Gata1 GATA binding protein 1 ISO RGD PMID:17687519 RGD:5131526 NCBI chrNW_004936721:742,862...750,843 JBrowse link
G Gfer growth factor, augmenter of liver regeneration ISO RGD PMID:23073658 RGD:9685733 NCBI chrNW_004936694:2,051,362...2,053,812 JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20547752) UniProt
Ensembl		 PMID:20547752 GO_REF:0000107 NCBI chrNW_004936537:6,610,565...6,618,509 JBrowse link
G Ghsr growth hormone secretagogue receptor ISO RGD PMID:15155262 RGD:12905047 NCBI chrNW_004936593:268,736...273,623 JBrowse link
G Git1 GIT ArfGAP 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:5,684,660...5,694,779 JBrowse link
G Grk6 G protein-coupled receptor kinase 6 ISO RGD PMID:23359120 RGD:13792782 NCBI chrNW_004936597:1,706,671...1,722,370 JBrowse link
G Gstp1 glutathione S-transferase pi 1 involved_in ISO (MGI:5009411|PMID:16023107) BHF-UCL PMID:16023107 MGI:5009411 NCBI chrNW_004936599:2,197,681...2,200,642 JBrowse link
G Hadhb hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:6,139,717...6,182,792 JBrowse link
G Havcr2 hepatitis A virus cellular receptor 2 involved_in ISO (MGI:5705210|PMID:25337993) UniProt PMID:25337993 MGI:5705210 NCBI chrNW_004936515:6,001,324...6,015,407 JBrowse link
G Hdac5 histone deacetylase 5 ISO RGD PMID:22933299 RGD:9590257 NCBI chrNW_004936541:561,721...598,915 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO RGD PMID:19940979 RGD:5147884 NCBI chrNW_004936495:5,770,988...5,816,157 JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (MGI:6244743|PMID:28096568) ARUK-UCL PMID:28096568 MGI:6244743 NCBI chrNW_004936472:25,236,728...25,246,585 JBrowse link
G Hmgb2 high mobility group box 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936516:4,536,664...4,539,331 JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO RGD PMID:11578593 RGD:1599044 NCBI chrNW_004936627:4,451,847...4,473,163 JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M ISO RGD PMID:14597422 RGD:10054261 NCBI chrNW_004936588:5,241,276...5,283,952 JBrowse link
G Hsf1 heat shock transcription factor 1 ISO RGD PMID:21540803 RGD:10402943 NCBI chrNW_004936470:7,927,734...7,950,805 JBrowse link
G Icam1 intercellular adhesion molecule 1 ISO RGD PMID:20674665 RGD:4145373 NCBI chrNW_004936659:616,570...627,172 JBrowse link
G Ifng interferon gamma acts_upstream_of_or_within ISO (MGI:3821815|PMID:18791161) MGI PMID:18791161 MGI:3821815 NCBI chrNW_004936545:6,139,130...6,144,543 JBrowse link
G Il10 interleukin 10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828894|PMID:19047410), (MGI:5013871|PMID:21609717) MGI
Ensembl		 PMID:19047410 PMID:21609717 GO_REF:0000107 MGI:3828894 MGI:5013871 NCBI chrNW_004936557:5,834,874...5,838,502 JBrowse link
G Il12a interleukin 12A acts_upstream_of_or_within ISO (MGI:3828894|PMID:19047410) MGI PMID:19047410 MGI:3828894 NCBI chrNW_004936519:6,166,060...6,180,652 JBrowse link
G Il12b interleukin 12B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4412460|PMID:18025219), (MGI:5013875|PMID:21606371) MGI
Ensembl		 PMID:18025219 PMID:21606371 GO_REF:0000107 MGI:4412460 MGI:5013875 NCBI chrNW_004936515:4,056,214...4,066,121 JBrowse link
G Il18 interleukin 18 ISO RGD PMID:11739527 RGD:729357 NCBI chrNW_004936612:2,306,963...2,325,086 JBrowse link
G Il1b interleukin 1 beta ISO RGD PMID:23200736 RGD:7175528 NCBI chrNW_004936783:1,251,678...1,256,807 JBrowse link
G Il24 interleukin 24 ISO RGD PMID:12182458 RGD:5147432 NCBI chrNW_004936557:5,719,592...5,727,113 JBrowse link
G Il6 interleukin 6 acts_upstream_of_or_within ISO (MGI:3828894|PMID:19047410), (MGI:5013875|PMID:21606371)
(PMID:23776175)		 RGD
MGI		 PMID:2789217 PMID:19047410 PMID:21606371 PMID:23776175 MGI:3828894 MGI:5013875 RGD:11049548 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Irak1 interleukin 1 receptor associated kinase 1 ISO RGD PMID:15793310 RGD:1579809 NCBI chrNW_004936809:891,407...900,311 JBrowse link
G Irf3 interferon regulatory factor 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5013875|PMID:21606371) MGI
Ensembl		 PMID:21606371 GO_REF:0000107 MGI:5013875 NCBI chrNW_004936664:3,477,750...3,482,489 JBrowse link
G Irf8 interferon regulatory factor 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3653161|PMID:9348310) MGI
Ensembl		 PMID:9348310 GO_REF:0000107 MGI:3653161 NCBI chrNW_004936641:2,608,109...2,622,446 JBrowse link
G Jak2 Janus kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5013875|PMID:21606371) MGI
Ensembl		 PMID:21606371 GO_REF:0000107 MGI:5013875 NCBI chrNW_004936503:111,722...243,627 JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit involved_in ISO (PMID:25110868) AgBase PMID:25110868 NCBI chrNW_004936522:3,034,364...3,037,632 JBrowse link
G Kmo kynurenine 3-monooxygenase ISO RGD PMID:26524415 RGD:13703043 NCBI chrNW_004936526:8,877,085...8,928,280 JBrowse link
G Lcn2 lipocalin 2 ISO RGD PMID:19329498 RGD:2316495 NCBI chrNW_004936487:15,721,752...15,725,396 JBrowse link
G Ldoc1 LDOC1 regulator of NFKB signaling involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:6,481,758...6,486,018 JBrowse link
G Litaf lipopolysaccharide induced TNF factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3687609|PMID:16954198) MGI
Ensembl		 PMID:16954198 GO_REF:0000107 MGI:3687609 NCBI chrNW_004936530:9,409,378...9,421,974 JBrowse link
G LOC101955076 low affinity immunoglobulin gamma Fc region receptor III-A ISO RGD PMID:19106808 RGD:5147925 NCBI chrNW_004937131:42,523...49,533 JBrowse link
G LOC101958966 lipopolysaccharide binding protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12594207) MGI
Ensembl		 PMID:12594207 GO_REF:0000107 NCBI chrNW_004936561:3,017,471...3,035,481 JBrowse link
G LOC101959956 cathepsin G-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:34,410...37,097 JBrowse link
G LOC101962367 DAB2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:10,056,809...10,243,021 JBrowse link
G LOC101964975 interleukin-8 involved_in ISO
IEA		 RGD
Ensembl		 PMID:31442273 GO_REF:0000107 RGD:150540302 NCBI chrNW_004936598:1,779,471...1,781,353 JBrowse link
G LOC101965069 C-C chemokine receptor type 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:294,189...297,321 JBrowse link
G LOC101970767 steroid 17-alpha-hydroxylase/17,20 lyase ISO RGD PMID:20665543 RGD:4145535 NCBI chrNW_004936600:3,097,620...3,102,713 JBrowse link
G LOC101972117 hepcidin antimicrobial peptide ISO RGD PMID:23506423 RGD:11041627 NCBI chrNW_004936570:1,009,344...1,010,654 JBrowse link
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:25891078) UniProt PMID:25891078 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G LOC101973872 bcl-2-like protein 2 involved_in ISO (MGI:5795816|PMID:22844456) UniProt PMID:22844456 MGI:5795816 NCBI chrNW_004936722:1,039,970...1,044,942 JBrowse link
G LOC101975820 cholesterol side-chain cleavage enzyme, mitochondrial ISO RGD PMID:20665543 RGD:4145535 NCBI chrNW_004936471:33,367,810...33,380,764 JBrowse link
G Ltc4s leukotriene C4 synthase ISO RGD PMID:9794912 RGD:2316634 NCBI chrNW_004936739:975,494...978,426 JBrowse link
G Ly96 lymphocyte antigen 96 involved_in ISO (MGI:5645195|PMID:24380872) UniProt PMID:24380872 MGI:5645195 NCBI chrNW_004936648:2,653,252...2,671,453 JBrowse link
G Malt1 MALT1 paracaspase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16831874) UniProt
Ensembl		 PMID:16831874 GO_REF:0000107 NCBI chrNW_004936497:5,854,361...5,910,719 JBrowse link
G Map2k3 mitogen-activated protein kinase kinase 3 ISO RGD PMID:14670949 RGD:7495812 NCBI chrNW_004936741:362,682...386,633 JBrowse link
G Map2k7 mitogen-activated protein kinase kinase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:4,882,191...4,891,807 JBrowse link
G Mapk14 mitogen-activated protein kinase 14 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23776175) MGI
Ensembl		 PMID:23776175 GO_REF:0000107 NCBI chrNW_004936476:23,237,762...23,310,211 JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23776175) MGI
Ensembl		 PMID:23776175 GO_REF:0000107 NCBI chrNW_004936728:1,775,746...1,893,895 JBrowse link
G Mapk9 mitogen-activated protein kinase 9 ISO RGD PMID:9475517 RGD:2304245 NCBI chrNW_004936739:551,678...602,027 JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (MGI:3829850|PMID:18955699) UniProt PMID:18955699 MGI:3829850 NCBI chrNW_004936469:7,060,480...7,225,497 JBrowse link
G Mmp1 matrix metallopeptidase 1 ISO RGD PMID:21683124 RGD:7207286 NCBI chrNW_004936551:5,167,909...5,175,149 JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO RGD PMID:21683124 RGD:7207286 NCBI chrNW_004936514:7,038,240...7,045,873 JBrowse link
G Mrc1 mannose receptor C-type 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5486412|PMID:22832163) MGI
Ensembl		 PMID:22832163 GO_REF:0000107 MGI:5486412 NCBI chrNW_004936520:9,463,007...9,547,321 JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor involved_in ISO (MGI:6355543|PMID:17660297) ARUK-UCL PMID:17660297 MGI:6355543 NCBI chrNW_004936473:27,672,237...27,676,339 JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:23776175) RGD
Ensembl
MGI		 PMID:16842873 PMID:23776175 GO_REF:0000107 RGD:10045666 NCBI chrNW_004936520:733,760...850,563 JBrowse link
G Nfkbib NFKB inhibitor beta acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4437182|PMID:20060382) MGI
Ensembl		 PMID:20060382 GO_REF:0000107 MGI:4437182 NCBI chrNW_004936661:1,850,185...1,857,757 JBrowse link
G Nfkbil1 NFKB inhibitor like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,950,356...1,963,847 JBrowse link
G Nlrp3 NLR family pyrin domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936864:709,693...732,119 JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:3,708,069...3,742,845 JBrowse link
G Nos2 nitric oxide synthase 2 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (MGI:3821815|PMID:18791161), (MGI:4412460|PMID:18025219) RGD
Ensembl
MGI		 PMID:18025219 PMID:18791161 PMID:21975807 GO_REF:0000107 MGI:3821815 MGI:4412460 RGD:5508737 NCBI chrNW_004936538:4,052,277...4,097,051 JBrowse link
G Nr1d1 nuclear receptor subfamily 1 group D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,206,194...15,213,858 JBrowse link
G Nr1h3 nuclear receptor subfamily 1 group H member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,937,665...1,946,680 JBrowse link
G Nr1h4 nuclear receptor subfamily 1 group H member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:13,315,265...13,365,186 JBrowse link
G Nuggc nuclear GTPase, germinal center associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936675:885,015...931,657 JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase ISO RGD PMID:19098112 RGD:9590190 NCBI chrNW_004936762:99,335...137,833 JBrowse link
G Oprk1 opioid receptor kappa 1 ISO RGD PMID:9645969 RGD:9831421 NCBI chrNW_004936496:280,593...305,900 JBrowse link
G P2ry2 purinergic receptor P2Y2 ISO RGD PMID:18689605 RGD:2316659 NCBI chrNW_004936498:2,432,436...2,444,495 JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,236,121...2,241,086 JBrowse link
G Park7 Parkinsonism associated deglycase ISO RGD PMID:23847046 RGD:13462068 NCBI chrNW_004936623:2,422,780...2,436,817 JBrowse link
G Pdcd4 programmed cell death 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:1,684,167...1,705,387 JBrowse link
G Pde2a phosphodiesterase 2A acts_upstream_of_or_within ISO (PMID:21571906) UniProt PMID:21571906 NCBI chrNW_004936498:1,856,256...1,944,405 JBrowse link
G Pde4b phosphodiesterase 4B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3521611|PMID:15585880) MGI
Ensembl		 PMID:15585880 GO_REF:0000107 MGI:3521611 NCBI chrNW_004936591:5,152,491...5,666,728 JBrowse link
G Pde4d phosphodiesterase 4D acts_upstream_of_or_within ISO (MGI:3521611|PMID:15585880) MGI PMID:15585880 MGI:3521611 NCBI chrNW_004936480:8,123,437...9,235,586 JBrowse link
G Plaa phospholipase A2 activating protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936611:2,665,294...2,698,372 JBrowse link
G Plau plasminogen activator, urokinase ISO RGD PMID:19184369 RGD:7241806 NCBI chrNW_004936521:5,238,128...5,243,829 JBrowse link
G Plscr1 phospholipid scramblase 1 acts_upstream_of_or_within ISO (PMID:17590392) UniProt PMID:17590392 NCBI chrNW_004936519:8,759,702...8,790,823 JBrowse link
G Plscr3 phospholipid scramblase 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17590392) UniProt
Ensembl		 PMID:17590392 GO_REF:0000107 NCBI chrNW_004936595:674,754...679,979 JBrowse link
G Plscr4 phospholipid scramblase 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17590392) UniProt
Ensembl		 PMID:17590392 GO_REF:0000107 NCBI chrNW_004936519:8,977,763...9,022,761 JBrowse link
G Ppard peroxisome proliferator activated receptor delta ISO RGD PMID:15728586 RGD:1580656 NCBI chrNW_004936476:23,799,285...23,886,606 JBrowse link
G Ppargc1a PPARG coactivator 1 alpha ISO RGD PMID:19853624 RGD:10059687 NCBI chrNW_004936477:4,881,230...5,488,208 JBrowse link
G Prpf8 pre-mRNA processing factor 8 ISO RGD PMID:1345341 RGD:10045884 NCBI chrNW_004936538:7,780,022...7,814,575 JBrowse link
G Ptger3 prostaglandin E receptor 3 ISO RGD PMID:14636300 RGD:10043359 NCBI chrNW_004936591:1,174,364...1,250,233 JBrowse link
G Pycard PYD and CARD domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:13,550,702...13,552,774 JBrowse link
G Rara retinoic acid receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,376,217...15,420,638 JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:20547752) RGD
Ensembl
UniProt		 PMID:9918814 PMID:15728586 PMID:20547752 GO_REF:0000107 RGD:1580656 RGD:2298880 NCBI chrNW_004936599:3,800,142...3,810,583 JBrowse link
G Rhoa ras homolog family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:1,000,050...1,045,655 JBrowse link
G Ripk2 receptor interacting serine/threonine kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2176422|PMID:11894098)
(MGI:2176424|PMID:11894097)		 MGI
Ensembl		 PMID:11894097 PMID:11894098 GO_REF:0000107 MGI:2176422 MGI:2176424 NCBI chrNW_004936544:3,606,925...3,653,248 JBrowse link
G Sbno2 strawberry notch homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:509,244...556,424 JBrowse link
G Selenos selenoprotein S involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:2,589,773...2,600,837 JBrowse link
G Serpine1 serpin family E member 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:20060032 GO_REF:0000107 RGD:13208812 NCBI chrNW_004936543:1,032,543...1,040,956 JBrowse link
G Sgms1 sphingomyelin synthase 1 ISO RGD PMID:12353928 RGD:1302423 NCBI chrNW_004936735:1,702,754...1,984,141 JBrowse link
G Shpk sedoheptulokinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:314,328...342,892 JBrowse link
G Sirpa signal regulatory protein alpha involved_in ISO (MGI:3760575|PMID:17954568) ARUK-UCL PMID:17954568 MGI:3760575 NCBI chrNW_004936485:16,608,317...16,654,552 JBrowse link
G Slc12a2 solute carrier family 12 member 2 involved_in ISO (MGI:6451247|PMID:31786261) MGI PMID:31786261 MGI:6451247 NCBI chrNW_004936504:1,378,812...1,465,463 JBrowse link
G Slc7a5 solute carrier family 7 member 5 ISO RGD PMID:29687865 RGD:151357004 NCBI chrNW_004936641:1,513,110...1,538,955 JBrowse link
G Socs1 suppressor of cytokine signaling 1 ISO RGD PMID:21742974 RGD:151347181 NCBI chrNW_004936530:9,312,965...9,315,593 JBrowse link
G Spon2 spondin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2686801|PMID:14691481) MGI
Ensembl		 PMID:14691481 GO_REF:0000107 MGI:2686801 NCBI chrNW_004936477:22,087,450...22,093,677 JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO RGD PMID:20149623 RGD:2325014 NCBI chrNW_004936561:3,826,802...3,844,406 JBrowse link
G Stap1 signal transducing adaptor family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936582:877,241...908,697 JBrowse link
G Star steroidogenic acute regulatory protein ISO RGD PMID:20665543 RGD:4145535 NCBI chrNW_004936710:1,523,289...1,530,181 JBrowse link
G Stat1 signal transducer and activator of transcription 1 acts_upstream_of_or_within ISO (MGI:5013875|PMID:21606371) MGI PMID:21606371 MGI:5013875 NCBI chrNW_004936506:7,196,860...7,235,854 JBrowse link
G Tbxa2r thromboxane A2 receptor ISO RGD PMID:10513923 RGD:11059603 NCBI chrNW_004936588:2,040,712...2,044,635 JBrowse link
G Tfpi tissue factor pathway inhibitor ISO RGD PMID:11816723 RGD:727341 NCBI chrNW_004936506:10,103,120...10,172,800 JBrowse link
G Ticam1 toll like receptor adaptor molecule 1 involved_in ISO (MGI:3718934|PMID:17658277) ParkinsonsUK-UCL PMID:17658277 MGI:3718934 NCBI chrNW_004936588:2,818,909...2,827,797 JBrowse link
G Ticam2 toll like receptor adaptor molecule 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936742:743,191...745,332 JBrowse link
G Tlr4 toll like receptor 4 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (MGI:1860539|PMID:10880523), (MGI:5604854|PMID:24740015)
(MGI:2686801|PMID:14691481)		 RGD
Ensembl
MGI		 PMID:10880523 PMID:14691481 PMID:20438866 PMID:24740015 GO_REF:0000107 MGI:1860539 MGI:2686801 MGI:5604854 RGD:7777075 NCBI chrNW_004936487:6,519,140...6,532,018 JBrowse link
G Tlr5 toll like receptor 5 ISO RGD PMID:21308757 RGD:5129495 NCBI chrNW_004936526:383,490...387,007 JBrowse link
G Tnf tumor necrosis factor acts_upstream_of_or_within ISO (MGI:3828894|PMID:19047410), (MGI:4437182|PMID:20060382), (MGI:5013875|PMID:21606371) RGD
MGI		 PMID:10959811 PMID:15602748 PMID:17964727 PMID:19047410 PMID:20060382 More... MGI:3828894 MGI:4437182 MGI:5013875 RGD:14994703 RGD:14995441 RGD:1582142 NCBI chrNW_004936727:1,936,066...1,937,766 JBrowse link
G Tnfaip3 TNF alpha induced protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936560:5,124,955...5,138,988 JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:908,414...935,765 JBrowse link
G Tnfsf4 TNF superfamily member 4 involved_in ISO (PMID:20844189) BHF-UCL PMID:20844189 NCBI chrNW_004936481:14,391,359...14,409,514 JBrowse link
G Tnip2 TNFAIP3 interacting protein 2 involved_in ISO (MGI:3656197|PMID:16633345) UniProt PMID:16633345 MGI:3656197 NCBI chrNW_004936477:20,810,188...20,841,537 JBrowse link
G Tnip3 TNFAIP3 interacting protein 3 involved_in ISO (PMID:17088249) UniProt PMID:17088249
G Traf6 TNF receptor associated factor 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23776175) MGI
Ensembl		 PMID:23776175 GO_REF:0000107 NCBI chrNW_004936533:1,857,685...1,874,973 JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 ISO RGD PMID:26383906 RGD:127284850 NCBI chrNW_004936476:18,577,825...18,583,675 JBrowse link
G Trim41 tripartite motif containing 41 involved_in ISO (PMID:27812135) UniProt PMID:27812135 NCBI chrNW_004936826:734,306...747,047 JBrowse link
G Tspo translocator protein ISO RGD PMID:14678758 RGD:2317158 NCBI chrNW_004936718:992,301...995,172 JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,469,444...2,505,688 JBrowse link
G Vim vimentin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936520:10,051,692...10,059,324 JBrowse link
G Vldlr very low density lipoprotein receptor ISO RGD PMID:16376325 RGD:1625574 NCBI chrNW_004936503:2,407,040...2,440,366 JBrowse link
G Vwf von Willebrand factor ISO RGD PMID:17708840 RGD:11079229 NCBI chrNW_004936709:1,578,137...1,741,877 JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211 JBrowse link
G Xbp1 X-box binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:2,891,171...2,895,409 JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:19,714,145...19,722,512 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
cellular response to lipoteichoic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl20 C-C motif chemokine ligand 20 ISO RGD PMID:15618187 RGD:7483631 NCBI chrNW_004936525:8,238,128...8,240,974 JBrowse link
G Cd14 CD14 molecule acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12594207) MGI
Ensembl		 PMID:12594207 GO_REF:0000107 NCBI chrNW_004936531:9,572,392...9,575,771 JBrowse link
G Cd36 CD36 molecule acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3587138|PMID:16061696)
(MGI:3528769|PMID:15690042)		 MGI
Ensembl		 PMID:15690042 PMID:16061696 GO_REF:0000107 MGI:3528769 MGI:3587138 NCBI chrNW_004936810:791,823...838,303 JBrowse link
G LOC101958966 lipopolysaccharide binding protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12594207) MGI
Ensembl		 PMID:12594207 GO_REF:0000107 NCBI chrNW_004936561:3,017,471...3,035,481 JBrowse link
G LOC101967682 TIR domain containing adaptor protein acts_upstream_of_or_within ISO (MGI:3528769|PMID:15690042) MGI PMID:15690042 MGI:3528769 NCBI chrNW_004936572:5,926,193...5,938,621 JBrowse link
G Mapk14 mitogen-activated protein kinase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:23,237,762...23,310,211 JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,800,142...3,810,583 JBrowse link
G Ripk2 receptor interacting serine/threonine kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2176422|PMID:11894098) MGI
Ensembl		 PMID:11894098 GO_REF:0000107 MGI:2176422 NCBI chrNW_004936544:3,606,925...3,653,248 JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3528769|PMID:15690042)
(PMID:12594207)		 MGI
Ensembl		 PMID:12594207 PMID:15690042 GO_REF:0000107 MGI:3528769 NCBI chrNW_004936576:522,234...531,660 JBrowse link
G Tlr4 toll like receptor 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2178646|PMID:10549626) MGI
Ensembl		 PMID:10549626 GO_REF:0000107 MGI:2178646 NCBI chrNW_004936487:6,519,140...6,532,018 JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:18,659,725...18,665,406 JBrowse link
cellular response to molecule of bacterial origin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acod1 aconitate decarboxylase 1 involved_in ISO (MGI:5489057|PMID:19014335) UniProt PMID:19014335 MGI:5489057 NCBI chrNW_004936511:4,322,198...4,326,562 JBrowse link
G Cd14 CD14 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:9,572,392...9,575,771 JBrowse link
G Cyrib CYFIP related Rac1 interactor B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:18,665,898...18,803,864 JBrowse link
G Fcgr2b Fc fragment of IgG receptor IIb acts_upstream_of_or_within ISO (MGI:3608295|PMID:12385742) MGI PMID:12385742 MGI:3608295 NCBI chrNW_004937131:80,014...96,114 JBrowse link
G Fzd5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936631:3,909,046...3,915,939 JBrowse link
G Ncam1 neural cell adhesion molecule 1 ISO RGD PMID:19853610 RGD:2325979 NCBI chrNW_004936612:1,262,557...1,556,281 JBrowse link
G Sirt2 sirtuin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:1,828,868...1,849,892 JBrowse link
G Tnf tumor necrosis factor ISO streptococcal cell wall RGD PMID:1580332 RGD:38508902 NCBI chrNW_004936727:1,936,066...1,937,766 JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211 JBrowse link
cellular response to molecule of fungal origin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btk Bruton tyrosine kinase ISO RGD PMID:10744701 RGD:1600536 NCBI chrNW_004936813:429,400...467,481 JBrowse link
G Clec7a C-type lectin domain containing 7A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936902:436,224...446,435 JBrowse link
G LOC101955136 SLP adaptor and CSK interacting membrane protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:2,575,255...2,585,969 JBrowse link
G Syk spleen associated tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936780:1,553,605...1,601,036 JBrowse link
cellular response to peptidoglycan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Defb124 defensin beta 124 involved_in ISO (PMID:24955228) UniProt PMID:24955228 NCBI chrNW_004936485:18,498,332...18,501,477 JBrowse link
G Nlrp3 NLR family pyrin domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936864:709,693...732,119 JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (MGI:3686795|PMID:16949315) RGD
Ensembl
MGI		 PMID:16949315 PMID:24169446 GO_REF:0000107 MGI:3686795 RGD:13204728 NCBI chrNW_004936475:3,708,069...3,742,845 JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,800,142...3,810,583 JBrowse link
G Ripk2 receptor interacting serine/threonine kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2176422|PMID:11894098) MGI
Ensembl		 PMID:11894098 GO_REF:0000107 MGI:2176422 NCBI chrNW_004936544:3,606,925...3,653,248 JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of_or_within ISO (MGI:3686795|PMID:16949315) MGI PMID:16949315 MGI:3686795 NCBI chrNW_004936576:522,234...531,660 JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:18,659,725...18,665,406 JBrowse link
cellular response to triacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd14 CD14 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:9,572,392...9,575,771 JBrowse link
G Tlr1 toll like receptor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19931471) MGI
Ensembl		 PMID:19931471 GO_REF:0000107 NCBI chrNW_004936482:6,582,430...6,591,128 JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19931471) MGI
Ensembl		 PMID:19931471 GO_REF:0000107 NCBI chrNW_004936576:522,234...531,660 JBrowse link
cellular response to tumor cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igfbpl1 insulin like growth factor binding protein like 1 involved_in ISO (PMID:15845387) UniProt PMID:15845387 NCBI chrNW_004936524:6,095,077...6,109,340 JBrowse link
G LOC101965998 notch receptor 2 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936872:454,273...539,544 JBrowse link
G LOC101976134 thioredoxin interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936867:722,544...726,595 JBrowse link
G Notch1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:1,292,016...1,334,061 JBrowse link
cellular response to type I interferon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101959549 interferon-induced protein with tetratricopeptide repeats 1B-like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936601:4,849,684...4,860,953 JBrowse link
G LOC101970383 interferon-induced protein with tetratricopeptide repeats 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936601:4,796,139...4,803,171 JBrowse link
G LOC101970676 interferon-induced protein with tetratricopeptide repeats 1B-like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936601:4,811,039...4,822,969 JBrowse link
G Nr1i2 nuclear receptor subfamily 1 group I member 2 involved_in ISO (PMID:24525126) AgBase PMID:24525126 NCBI chrNW_004936536:6,691,590...6,726,421 JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6103025|PMID:28835460) MGI
Ensembl		 PMID:28835460 GO_REF:0000107 MGI:6103025 NCBI chrNW_004936529:264,535...266,451 JBrowse link
cellular response to virus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase RNA specific involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:4,183,016...4,208,341 JBrowse link
G Arf1 ADP ribosylation factor 1 involved_in ISO (PMID:28389568) UniProt PMID:28389568 NCBI chrNW_004936864:117,510...119,612 JBrowse link
G Atf2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:4,729,984...4,826,367 JBrowse link
G Bax BCL2 associated X, apoptosis regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,968,103...2,973,652 JBrowse link
G Calr calreticulin ISO RGD PMID:31399043 RGD:151347548 NCBI chrNW_004936659:1,994,695...1,999,070 JBrowse link
G Ccl19 C-C motif chemokine ligand 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:2,765,271...2,767,259 JBrowse link
G Ccl5 C-C motif chemokine ligand 5 involved_in ISO (PMID:28146100) ARUK-UCL PMID:28146100 NCBI chrNW_004936490:253,279...259,947 JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:33,933...78,990 JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936676:60,869...63,028 JBrowse link
G Ddx3x DEAD-box helicase 3 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:7,770,896...7,820,555 JBrowse link
G Eif5a eukaryotic translation initiation factor 5A involved_in ISO (PMID:8596953), (PMID:9465063) UniProt PMID:8596953 PMID:9465063 NCBI chrNW_004936595:604,268...609,075 JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6478092|PMID:25741008) MGI
Ensembl		 PMID:25741008 GO_REF:0000107 MGI:6478092 NCBI chrNW_004936470:28,303,213...28,566,470 JBrowse link
G Flt3 fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO (MGI:4452060|PMID:20457904) MGI PMID:20457904 MGI:4452060 NCBI chrNW_004936472:23,169,967...23,239,178 JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 involved_in ISO (PMID:28389568) UniProt PMID:28389568 NCBI chrNW_004936600:3,479,045...3,604,241 JBrowse link
G Gli2 GLI family zinc finger 2 involved_in ISO (PMID:9557682) UniProt PMID:9557682 NCBI chrNW_004936469:49,616,552...49,788,760 JBrowse link
G Gsdme gasdermin E involved_in ISO (PMID:28045099)
(MGI:5901785|PMID:28045099)		 UniProt PMID:28045099 MGI:5901785 NCBI chrNW_004936478:1,655,487...1,720,996 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:5,770,988...5,816,157 JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in ISO (PMID:25609812) UniProt PMID:25609812 NCBI chrNW_004936835:316,767...321,999 JBrowse link
G Ifih1 interferon induced with helicase C domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:16,721,306...16,778,249 JBrowse link
G Ifnb1 interferon beta 1 involved_in ISO (MGI:5645191|PMID:24882218)
(PMID:28146100)		 UniProt
ARUK-UCL		 PMID:24882218 PMID:28146100 MGI:5645191 NCBI chrNW_004936652:2,736,270...2,736,833 JBrowse link
G Ikbke inhibitor of nuclear factor kappa B kinase subunit epsilon involved_in ISO (MGI:5645191|PMID:24882218) UniProt PMID:24882218 MGI:5645191 NCBI chrNW_004936557:6,066,207...6,090,767 JBrowse link
G Il10 interleukin 10 ISO porcine reproductive and respiratory syndrome virus RGD PMID:31442273 RGD:150540302 NCBI chrNW_004936557:5,834,874...5,838,502 JBrowse link
G Il12a interleukin 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936519:6,166,060...6,180,652 JBrowse link
G Il21 interleukin 21 involved_in ISO (MGI:5450752|PMID:23045607) UniProt PMID:23045607 MGI:5450752 NCBI chrNW_004936662:1,689,879...1,696,883 JBrowse link
G Il6 interleukin 6 involved_in ISO (MGI:5450752|PMID:23045607) UniProt PMID:23045607 MGI:5450752 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Irf3 interferon regulatory factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,477,750...3,482,489 JBrowse link
G Lgals8 galectin 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:16,357,433...16,374,675 JBrowse link
G Lgals9 galectin 9 involved_in ISO (PMID:25754930)
(MGI:5491117|PMID:23408620)		 UniProt PMID:23408620 PMID:25754930 MGI:5491117 NCBI chrNW_004936538:4,034,467...4,050,240 JBrowse link
G LOC101957668 CREB binding protein involved_in ISO (MGI:2151262|PMID:11583620) CAFA PMID:11583620 MGI:2151262 NCBI chrNW_004936694:552,447...663,237 JBrowse link
G LOC101964975 interleukin-8 ISO RGD PMID:31442273 RGD:150540302 NCBI chrNW_004936598:1,779,471...1,781,353 JBrowse link
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:28389568) UniProt PMID:28389568 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G Mapk11 mitogen-activated protein kinase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:542,143...549,861 JBrowse link
G Mapk14 mitogen-activated protein kinase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:23,237,762...23,310,211 JBrowse link
G Mmp12 matrix metallopeptidase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:5,107,567...5,117,843 JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936520:733,760...850,563 JBrowse link
G Nlrp3 NLR family pyrin domain containing 3 involved_in ISO (PMID:33231615) UniProt PMID:33231615 NCBI chrNW_004936864:709,693...732,119 JBrowse link
G Penk proenkephalin ISO RGD PMID:8411369 RGD:10003023 NCBI chrNW_004936496:3,016,247...3,021,726 JBrowse link
G Pou2af1 POU class 2 homeobox associating factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936612:3,032,015...3,055,015 JBrowse link
G Pou2f2 POU class 2 homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:335,613...393,854 JBrowse link
G Psmb9 proteasome 20S subunit beta 9 ISO RGD PMID:9001385 RGD:9850285 NCBI chrNW_004936476:25,894,313...25,899,132 JBrowse link
G Riok3 RIO kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936550:2,921,272...2,949,288 JBrowse link
G Rrp1b ribosomal RNA processing 1B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:574,445...600,555 JBrowse link
G S100a6 S100 calcium binding protein A6 involved_in ISO (PMID:25480733) AgBase PMID:25480733 NCBI chrNW_004936580:3,347,185...3,347,878 JBrowse link
G Smad3 SMAD family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:27,080,662...27,185,861 JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:3,742,080...3,758,266 JBrowse link
G Tlr3 toll like receptor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936554:3,370,766...3,388,125 JBrowse link
G Tlr7 toll like receptor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:2,593,544...2,610,972 JBrowse link
G Tomm70 translocase of outer mitochondrial membrane 70 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:2,906,573...2,938,837 JBrowse link
G Trim6 tripartite motif containing 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937097:23,695...31,673 JBrowse link
G Vwce von Willebrand factor C and EGF domains involved_in ISO (PMID:16496348) UniProt PMID:16496348 NCBI chrNW_004936581:1,748,511...1,770,648 JBrowse link
G Wdfy4 WDFY family member 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6257237|PMID:30409884) MGI
Ensembl		 PMID:30409884 GO_REF:0000107 MGI:6257237 NCBI chrNW_004936728:1,262,433...1,503,805 JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:19,714,145...19,722,512 JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 ISO RGD PMID:20226086 RGD:13673889 NCBI chrNW_004936592:3,321,564...3,379,015 JBrowse link
complement activation, alternative pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C5 complement C5 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936487:9,391,774...9,474,168 JBrowse link
G C8a complement C8 alpha chain involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936522:4,686,306...4,745,175 JBrowse link
G C9 complement C9 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936518:2,947,956...2,994,892 JBrowse link
G Cfb complement factor B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1096110|PMID:9238044)
(MGI:6100611|PMID:27564415)		 MGI
UniProt		 PMID:9238044 PMID:27564415 GO_REF:0000043 MGI:1096110 MGI:6100611 NCBI chrNW_004936727:1,595,872...1,602,274 JBrowse link
G Cfd complement factor D acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6100611|PMID:27564415) MGI
InterPro
Ensembl		 PMID:27564415 GO_REF:0000002 GO_REF:0000107 MGI:6100611 NCBI chrNW_004936588:350,925...352,732 JBrowse link
G Cr2 complement C3d receptor 2 involved_in ISO (PMID:11981823) ARUK-UCL PMID:11981823 NCBI chrNW_004936557:5,246,770...5,256,608 JBrowse link
G LOC101961626 complement factor properdin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:13,391,613...13,398,723 JBrowse link
G LOC101964865 complement receptor type 1 involved_in ISO (PMID:11981823) ARUK-UCL PMID:11981823 NCBI chrNW_004936557:5,185,831...5,284,999 JBrowse link
complement activation, lectin pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Colec10 collectin subfamily member 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:27,416,471...27,449,206 JBrowse link
G Colec11 collectin subfamily member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:1,757,288...1,776,053 JBrowse link
G Fcn3 ficolin 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:11907111)
(MGI:5473786|PMID:16328467)		 UniProt
MGI		 PMID:11907111 PMID:16328467 MGI:5473786 NCBI chrNW_004936474:11,680,166...11,685,214 JBrowse link
G Krt1 keratin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:10,084,764...10,090,312 JBrowse link
G LOC101965964 ficolin-1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:2,421,092...2,428,240 JBrowse link
G LOC101977501 mannose-binding protein A-like involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936716:89,232...91,728 JBrowse link
G Masp1 MBL associated serine protease 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:2,804,460...2,857,731 JBrowse link
G Masp2 MBL associated serine protease 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5473786|PMID:16328467) MGI
Ensembl
InterPro		 PMID:16328467 GO_REF:0000002 GO_REF:0000107 MGI:5473786 NCBI chrNW_004936474:100,584...113,781 JBrowse link
contact inhibition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936579:5,893,064...5,917,021 JBrowse link
G Tspo translocator protein ISO RGD PMID:18190798 RGD:2317142 NCBI chrNW_004936718:992,301...995,172 JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:5,638,383...5,740,523 JBrowse link
cytolysis by host of symbiont cells term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Defb130b defensin beta 130B involved_in ISO (PMID:28181499) UniProt PMID:28181499 NCBI chrNW_004937117:30,234...38,633 JBrowse link
G F2 coagulation factor II, thrombin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:2,371,725...2,388,617 JBrowse link
G Hrg histidine rich glycoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:3,285,986...3,295,876 JBrowse link
G Krt6a keratin 6A involved_in ISO (PMID:23006328) UniProt PMID:23006328 NCBI chrNW_004936512:9,903,206...9,908,009 JBrowse link
G Reg3g regenerating family member 3 gamma involved_in ISO (PMID:16931762)
(MGI:5897756|PMID:16931762)		 UniProt PMID:16931762 MGI:5897756 NCBI chrNW_004936556:4,896,141...4,898,240 JBrowse link
G Romo1 reactive oxygen species modulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:5,134,068...5,135,734 JBrowse link
cytoplasmic pattern recognition receptor signaling pathway in response to virus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx58 DExH-box helicase 58 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:16,940,776...16,949,836 JBrowse link
defense response to bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts4 ADAM metallopeptidase with thrombospondin type 1 motif 4 acts_upstream_of_or_within ISO (MGI:5525040|PMID:23684986) MGI PMID:23684986 MGI:5525040 NCBI chrNW_004936903:490,718...500,443 JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5525040|PMID:23684986) MGI
Ensembl		 PMID:23684986 GO_REF:0000107 MGI:5525040 NCBI chrNW_004936640:857,565...899,355 JBrowse link
G Aicda activation induced cytidine deaminase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3032861|PMID:14766966) MGI
Ensembl		 PMID:14766966 GO_REF:0000107 MGI:3032861 NCBI chrNW_004936870:25,039...34,601 JBrowse link
G Akirin2 akirin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936510:4,216,893...4,221,962 JBrowse link
G Ankrd17 ankyrin repeat domain 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936598:2,191,604...2,338,832 JBrowse link
G Anxa3 annexin A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936676:2,153,752...2,216,498 JBrowse link
G Bcl3 BCL3 transcription coactivator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:85481|PMID:9009202) MGI
Ensembl		 PMID:9009202 GO_REF:0000107 MGI:85481 NCBI chrNW_004936706:1,410,848...1,427,822 JBrowse link
G Bpi bactericidal permeability increasing protein involved_in ISO
IEA		 RGD
UniProt		 PMID:11445707 GO_REF:0000043 RGD:1331346 NCBI chrNW_004936561:3,043,520...3,069,680 JBrowse link
G Clec4d C-type lectin domain family 4 member D acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5525050|PMID:23602766) MGI
Ensembl		 PMID:23602766 GO_REF:0000107 MGI:5525050 NCBI chrNW_004936858:303,639...312,092 JBrowse link
G Clec4e C-type lectin domain family 4 member E acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5525050|PMID:23602766) MGI
Ensembl		 PMID:23602766 GO_REF:0000107 MGI:5525050 NCBI chrNW_004936858:316,954...321,668 JBrowse link
G Coch cochlin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5525040|PMID:23684986) MGI
InterPro		 PMID:23684986 GO_REF:0000002 MGI:5525040 NCBI chrNW_004936494:5,617,201...5,633,500 JBrowse link
G Colec12 collectin subfamily member 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936550:169,084...350,209 JBrowse link
G Cxcl13 C-X-C motif chemokine ligand 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936676:1,309,625...1,314,532 JBrowse link
G Defb1 defensin beta 1 acts_upstream_of_or_within ISO (PMID:21115716) MGI PMID:21115716 NCBI chrNW_004936615:4,780,229...4,790,516 JBrowse link
G Defb123 defensin beta 123 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936485:18,481,031...18,487,862 JBrowse link
G Defb124 defensin beta 124 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936485:18,498,332...18,501,477 JBrowse link
G Dhx15 DEAH-box helicase 15 involved_in ISO (MGI:6505029|PMID:33483420) UniProt PMID:33483420 MGI:6505029 NCBI chrNW_004936477:4,797,345...4,844,804 JBrowse link
G Eppin epididymal peptidase inhibitor involved_in ISO (PMID:18331357) UniProt PMID:18331357 NCBI chrNW_004936514:7,387,348...7,392,274 JBrowse link
G Fcer1g Fc fragment of IgE receptor Ig acts_upstream_of_or_within ISO (MGI:2683721|PMID:11237803) MGI PMID:11237803 MGI:2683721 NCBI chrNW_004936903:514,278...517,975 JBrowse link
G Fcgr1a Fc fragment of IgG receptor Ia acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2664488|PMID:11911824) MGI
Ensembl		 PMID:11911824 GO_REF:0000107 MGI:2664488 NCBI chrNW_004936580:115,552...144,970 JBrowse link
G Ifnb1 interferon beta 1 acts_upstream_of_or_within ISO (MGI:3051174|PMID:15240719) MGI PMID:15240719 MGI:3051174 NCBI chrNW_004936652:2,736,270...2,736,833 JBrowse link
G Ifne interferon epsilon involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936652:3,140,568...3,141,122 JBrowse link
G Ifng interferon gamma acts_upstream_of_or_within ISO (MGI:3051174|PMID:15240719) MGI PMID:15240719 MGI:3051174 NCBI chrNW_004936545:6,139,130...6,144,543 JBrowse link
G Il10 interleukin 10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1861065|PMID:10899905) MGI
Ensembl		 PMID:10899905 GO_REF:0000107 MGI:1861065 NCBI chrNW_004936557:5,834,874...5,838,502 JBrowse link
G Irf8 interferon regulatory factor 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3773503|PMID:18045875) MGI
Ensembl		 PMID:18045875 GO_REF:0000107 MGI:3773503 NCBI chrNW_004936641:2,608,109...2,622,446 JBrowse link
G Isg15 ISG15 ubiquitin like modifier involved_in ISO (PMID:22859821)
(MGI:5437528|PMID:22859821)		 UniProt PMID:22859821 MGI:5437528 NCBI chrNW_004936737:2,043,383...2,044,761 JBrowse link
G Lcn2 lipocalin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,721,752...15,725,396 JBrowse link
G Leap2 liver enriched antimicrobial peptide 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936647:2,343,149...2,345,616 JBrowse link
G Lgals4 galectin 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6507238|PMID:27427436) MGI
Ensembl		 PMID:27427436 GO_REF:0000107 MGI:6507238 NCBI chrNW_004936661:1,772,394...1,780,590 JBrowse link
G LOC101955647 beta-defensin 121 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936485:18,426,481...18,427,866 JBrowse link
G LOC101958779 lysozyme C-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936545:7,134,214...7,138,573 JBrowse link
G LOC101958966 lipopolysaccharide binding protein involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936561:3,017,471...3,035,481 JBrowse link
G LOC101959058 lysozyme C involved_in IEA UniProt
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936545:7,151,591...7,157,908 JBrowse link
G LOC101959346 lysozyme C involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936545:7,165,917...7,170,840 JBrowse link
G LOC101961563 neutrophilic granule protein-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936596:1,074,837...1,078,480 JBrowse link
G LOC101961846 neutrophil elastase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:345,678...347,420 JBrowse link
G LOC101962700 cathelicidin antimicrobial peptide-like involved_in IEA InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936596:1,711,313...1,713,213 JBrowse link
G LOC101964473 caspase-4-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:3,242,381...3,269,821 JBrowse link
G LOC101965998 notch receptor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5562510|PMID:23913046) MGI
Ensembl		 PMID:23913046 GO_REF:0000107 MGI:5562510 NCBI chrNW_004936872:454,273...539,544 JBrowse link
G LOC101966536 NLR family apoptosis inhibitory protein involved_in ISO (MGI:5289703|PMID:21874021) UniProt PMID:21874021 MGI:5289703 NCBI chrNW_004936549:5,000,526...5,069,110 JBrowse link
G LOC101969863 sperm-associated antigen 11B-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004937117:109,397...111,539 JBrowse link
G LOC101969922 beta-defensin 110-like involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936476:10,589,154...10,594,047 JBrowse link
G LOC101971012 beta-defensin 13-like involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004937117:65,487...68,231 JBrowse link
G LOC101971305 beta-defensin 105-like involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004937117:79,064...80,798 JBrowse link
G LOC101971590 beta-defensin 106A-like involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004937117:93,394...96,412 JBrowse link
G LOC101972117 hepcidin antimicrobial peptide acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5502531|PMID:23390527)
(MGI:1931951|PMID:11113131)		 MGI
Ensembl		 PMID:11113131 PMID:23390527 GO_REF:0000107 MGI:1931951 MGI:5502531 NCBI chrNW_004936570:1,009,344...1,010,654 JBrowse link
G LOC101972196 beta-defensin 103A-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004937117:148,568...149,364 JBrowse link
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:16888103)
(MGI:3656111|PMID:16888103)		 UniProt PMID:16888103 MGI:3656111 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G LOC101976500 haptoglobin involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936475:21,841,054...21,845,821 JBrowse link
G LOC106145530 sperm-associated antigen 11-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004937117:125,303...128,754 JBrowse link
G LOC110598145 WAP four-disulfide core domain protein 15A involved_in ISO (MGI:2450032|PMID:12574366) UniProt PMID:12574366 MGI:2450032 NCBI chrNW_004936514:7,650,114...7,651,139 JBrowse link
G Lpo lactoperoxidase involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936490:4,821,421...4,838,377 JBrowse link
G Lyg2 lysozyme g2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:1,589,105...1,597,713 JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO (MGI:53883|PMID:4589319), (MGI:53949|PMID:4601767), (MGI:68578|PMID:7988496) MGI PMID:4589319 PMID:4601767 PMID:7988496 MGI:53883 MGI:53949 MGI:68578 NCBI chrNW_004936484:16,750,976...16,915,999 JBrowse link
G Lyzl4 lysozyme like 4 NOT|involved_in ISO (MGI:5882876|PMID:21444326) UniProt PMID:21444326 MGI:5882876 NCBI chrNW_004936695:2,668,444...2,674,605 JBrowse link
G Lyzl6 lysozyme like 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,801,350...1,804,767 JBrowse link
G Mavs mitochondrial antiviral signaling protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:14,842,778...14,859,163 JBrowse link
G Mmp7 matrix metallopeptidase 7 acts_upstream_of_or_within ISO (MGI:3698376|PMID:11248802) MGI PMID:11248802 MGI:3698376 NCBI chrNW_004936551:5,388,456...5,395,071 JBrowse link
G Mpeg1 macrophage expressed 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:3,428,515...3,436,877 JBrowse link
G Muc5b mucin 5B, oligomeric mucus/gel-forming acts_upstream_of_or_within ISO (MGI:5554612|PMID:24317696) MGI PMID:24317696 MGI:5554612 NCBI chrNW_004936816:174,943...209,241 JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:27,672,237...27,676,339 JBrowse link
G Ncf1 neutrophil cytosolic factor 1 acts_upstream_of_or_within ISO (MGI:3718167|PMID:17526748)
(MGI:86599|PMID:9116268)		 MGI PMID:9116268 PMID:17526748 MGI:3718167 MGI:86599 NCBI chrNW_004936543:3,617,369...3,630,990 JBrowse link
G Nlrc4 NLR family CARD domain containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:1,189,940...1,233,408 JBrowse link
G Nlrp1 NLR family pyrin domain containing 1 acts_upstream_of_or_within ISO (MGI:3583691|PMID:16429160) MGI PMID:16429160 MGI:3583691 NCBI chrNW_004936677:2,248,153...2,290,802 JBrowse link
G Nod1 nucleotide binding oligomerization domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:6,717,354...6,768,293 JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:3,708,069...3,742,845 JBrowse link
G Nos2 nitric oxide synthase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2673089|PMID:12933833) MGI
Ensembl		 PMID:12933833 GO_REF:0000107 MGI:2673089 NCBI chrNW_004936538:4,052,277...4,097,051 JBrowse link
G Nr1h4 nuclear receptor subfamily 1 group H member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:13,315,265...13,365,186 JBrowse link
G Oas3 2'-5'-oligoadenylate synthetase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936668:2,917,978...2,965,336 JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936706:2,317,137...2,320,993 JBrowse link
G Plac8 placenta associated 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3834064|PMID:17404296) MGI
Ensembl		 PMID:17404296 GO_REF:0000107 MGI:3834064 NCBI chrNW_004936738:1,484,905...1,503,181 JBrowse link
G Prkcd protein kinase C delta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:3,892,625...3,923,467 JBrowse link
G Rab14 RAB14, member RAS oncogene family involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936487:9,675,517...9,699,469 JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (PMID:22939626) UniProt PMID:22939626 NCBI chrNW_004936491:9,858,645...9,891,674 JBrowse link
G Rag2 recombination activating 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3032861|PMID:14766966) MGI
Ensembl		 PMID:14766966 GO_REF:0000107 MGI:3032861 NCBI chrNW_004936533:1,801,207...1,807,431 JBrowse link
G Rbck1 RANBP2-type and C3HC4-type zinc finger containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:18,057,569...18,071,787 JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2178898|PMID:11967543) MGI
Ensembl		 PMID:11967543 GO_REF:0000107 MGI:2178898 NCBI chrNW_004936477:3,354,336...3,445,248 JBrowse link
G Rnf213 ring finger protein 213 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:4,241,006...4,331,841 JBrowse link
G Rnf31 ring finger protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:385,972...397,718 JBrowse link
G Romo1 reactive oxygen species modulator 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936561:5,134,068...5,135,734 JBrowse link
G S100a14 S100 calcium binding protein A14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,414,315...3,416,335 JBrowse link
G Sharpin SHANK associated RH domain interactor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:8,076,605...8,081,872 JBrowse link
G Shc1 SHC adaptor protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:4,511,560...4,522,003 JBrowse link
G Slamf8 SLAM family member 8 acts_upstream_of_or_within ISO (MGI:5442671|PMID:22593622) MGI PMID:22593622 MGI:5442671 NCBI chrNW_004936740:776,557...786,182 JBrowse link
G Slamf9 SLAM family member 9 acts_upstream_of_or_within ISO (MGI:6415747|PMID:31880316) MGI PMID:31880316 MGI:6415747 NCBI chrNW_004936740:661,663...665,166 JBrowse link
G Slc11a1 solute carrier family 11 member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3773503|PMID:18045875), (MGI:54685|PMID:385184), (MGI:60911|PMID:1541907)
(MGI:3788936|PMID:18285491)
(MGI:75899|PMID:7650477)		 MGI
Ensembl		 PMID:385184 PMID:1541907 PMID:7650477 PMID:18045875 PMID:18285491 GO_REF:0000107 MGI:3773503 MGI:3788936 MGI:54685 MGI:60911 MGI:75899 NCBI chrNW_004936569:888,309...895,991 JBrowse link
G Spn sialophorin acts_upstream_of_or_within ISO (MGI:1861065|PMID:10899905)
(PMID:10899905)		 MGI PMID:10899905 MGI:1861065 NCBI chrNW_004936501:12,773,967...12,776,642 JBrowse link
G Spon2 spondin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2686801|PMID:14691481) MGI
Ensembl		 PMID:14691481 GO_REF:0000107 MGI:2686801 NCBI chrNW_004936477:22,087,450...22,093,677 JBrowse link
G Stab1 stabilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:3,333,988...3,363,256 JBrowse link
G Stab2 stabilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:10,678,074...10,817,870 JBrowse link
G Syk spleen associated tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936780:1,553,605...1,601,036 JBrowse link
G Tlr4 toll like receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:6,519,140...6,532,018 JBrowse link
G Tlr5 toll like receptor 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936526:383,490...387,007 JBrowse link
G Tmf1 TATA element modulatory factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5440392|PMID:22553199) MGI
Ensembl		 PMID:22553199 GO_REF:0000107 MGI:5440392 NCBI chrNW_004936603:1,577,519...1,602,022 JBrowse link
G Tnf tumor necrosis factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1861065|PMID:10899905) MGI
Ensembl		 PMID:10899905 GO_REF:0000107 MGI:1861065 NCBI chrNW_004936727:1,936,066...1,937,766 JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1097215|PMID:9324362) MGI
Ensembl		 PMID:9324362 GO_REF:0000107 MGI:1097215 NCBI chrNW_004936709:1,407,327...1,421,448 JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:18,659,725...18,665,406 JBrowse link
G Znfx1 zinc finger NFX1-type containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:4,964,844...4,992,004 JBrowse link
defense response to fungus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cotl1 coactosin like F-actin binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:3,422,734...3,458,830 JBrowse link
G CUNH10orf99 chromosome unknown C10orf99 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936767:790,152...798,265 JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase involved_in ISO (PMID:22832495) UniProt PMID:22832495 NCBI chrNW_004936709:1,243,149...1,247,782 JBrowse link
G Hrg histidine rich glycoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:3,285,986...3,295,876 JBrowse link
G Il17a interleukin 17A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:8,621,860...8,625,008 JBrowse link
G Il17ra interleukin 17 receptor A involved_in ISO (MGI:4462077|PMID:20554964) UniProt PMID:20554964 MGI:4462077 NCBI chrNW_004936807:143,165...165,820 JBrowse link
G Il17rc interleukin 17 receptor C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:3,267,397...3,281,985 JBrowse link
G Jagn1 jagunal homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:3,300,685...3,303,509 JBrowse link
G Leap2 liver enriched antimicrobial peptide 2 involved_in ISO (PMID:12493837) UniProt PMID:12493837 NCBI chrNW_004936647:2,343,149...2,345,616 JBrowse link
G LOC101958191 thymic stromal lymphopoietin involved_in ISO (PMID:24850429) UniProt PMID:24850429 NCBI chrNW_004936531:5,495,872...5,500,462 JBrowse link
G LOC101959956 cathepsin G-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:34,410...37,097 JBrowse link
G LOC101961846 neutrophil elastase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:345,678...347,420 JBrowse link
G LOC101970943 protein S100-A12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,244,756...3,246,223 JBrowse link
G LOC101972117 hepcidin antimicrobial peptide acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:56499|PMID:2995362) MGI
Ensembl		 PMID:2995362 GO_REF:0000107 MGI:56499 NCBI chrNW_004936570:1,009,344...1,010,654 JBrowse link
G Mpo myeloperoxidase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1333719|PMID:10085024) MGI
Ensembl		 PMID:10085024 GO_REF:0000107 MGI:1333719 NCBI chrNW_004936490:4,809,773...4,819,070 JBrowse link
G Ncf1 neutrophil cytosolic factor 1 acts_upstream_of_or_within ISO (MGI:2182072|PMID:10714686)
(MGI:3588470|PMID:16041040)		 MGI PMID:10714686 PMID:16041040 MGI:2182072 MGI:3588470 NCBI chrNW_004936543:3,617,369...3,630,990 JBrowse link
G Nlrp10 NLR family pyrin domain containing 10 involved_in ISO (MGI:5449483|PMID:23071280) UniProt PMID:23071280 MGI:5449483 NCBI chrNW_004936528:9,938,270...9,969,115 JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta acts_upstream_of_or_within ISO (MGI:5550204|PMID:24009720) MGI PMID:24009720 MGI:5550204 NCBI chrNW_004936623:3,672,201...3,696,959 JBrowse link
G Spon2 spondin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2686801|PMID:14691481) MGI
Ensembl		 PMID:14691481 GO_REF:0000107 MGI:2686801 NCBI chrNW_004936477:22,087,450...22,093,677 JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO RGD PMID:16272332 RGD:1579756 NCBI chrNW_004936661:3,742,080...3,758,266 JBrowse link
G Zbp1 Z-DNA binding protein 1 involved_in ISO (MGI:6490907|PMID:33109609) UniProt PMID:33109609 MGI:6490907 NCBI chrNW_004936530:398,980...408,798 JBrowse link
defense response to Gram-negative bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adm adrenomedullin involved_in ISO (PMID:10225288) UniProt PMID:10225288 NCBI chrNW_004936528:8,005,223...8,007,586 JBrowse link
G Aqp1 aquaporin 1 (Colton blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:7,146,997...7,160,369 JBrowse link
G B2m beta-2-microglobulin involved_in ISO (PMID:23144825) UniProt PMID:23144825 NCBI chrNW_004936471:7,646,504...7,655,656 JBrowse link
G Bpi bactericidal permeability increasing protein involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936561:3,043,520...3,069,680 JBrowse link
G Cd160 CD160 molecule acts_upstream_of_or_within ISO (MGI:5432939|PMID:22801499) MGI PMID:22801499 MGI:5432939 NCBI chrNW_004936867:478,625...485,905 JBrowse link
G Cd4 CD4 molecule acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2683356|PMID:14688352) MGI
Ensembl		 PMID:14688352 GO_REF:0000107 MGI:2683356 NCBI chrNW_004936709:997,776...1,022,791 JBrowse link
G Chga chromogranin A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936733:915,700...927,220 JBrowse link
G Cst11 cystatin 11 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936620:2,115,927...2,119,683 JBrowse link
G Defb1 defensin beta 1 involved_in ISO (PMID:25122636) UniProt PMID:25122636 NCBI chrNW_004936615:4,780,229...4,790,516 JBrowse link
G Defb114 defensin beta 114 involved_in ISO (PMID:23482568) UniProt PMID:23482568 NCBI chrNW_004936476:10,651,162...10,657,785 JBrowse link
G Defb127 defensin beta 127 involved_in ISO (PMID:19373462) UniProt PMID:19373462 NCBI chrNW_004936485:18,255,550...18,257,277 JBrowse link
G Defb128 defensin beta 128 involved_in ISO (PMID:15625724) UniProt PMID:15625724 NCBI chrNW_004936485:18,238,442...18,240,625 JBrowse link
G Drosha drosha ribonuclease III involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:9,100,094...9,218,405 JBrowse link
G Gsdmd gasdermin D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:8,567,085...8,571,448 JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISS
IEA		 AgBase
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936516:4,536,664...4,539,331 JBrowse link
G Il12b interleukin 12B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936515:4,056,214...4,066,121 JBrowse link
G Il17a interleukin 17A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:8,621,860...8,625,008 JBrowse link
G Il17f interleukin 17F involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:8,579,282...8,580,916 JBrowse link
G Il22ra1 interleukin 22 receptor subunit alpha 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5432939|PMID:22801499) MGI
Ensembl		 PMID:22801499 GO_REF:0000107 MGI:5432939 NCBI chrNW_004936474:9,184,559...9,201,918 JBrowse link
G Il23a interleukin 23 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:743,630...745,998 JBrowse link
G LOC101954543 caspase-1-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:3,230,060...3,240,496 JBrowse link
G LOC101955647 beta-defensin 121 involved_in ISO (PMID:24449502) UniProt PMID:24449502 NCBI chrNW_004936485:18,426,481...18,427,866 JBrowse link
G LOC101958191 thymic stromal lymphopoietin involved_in ISO (PMID:24850429) UniProt PMID:24850429 NCBI chrNW_004936531:5,495,872...5,500,462 JBrowse link
G LOC101958966 lipopolysaccharide binding protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3719540|PMID:12055258) MGI
Ensembl
InterPro		 PMID:12055258 GO_REF:0000002 GO_REF:0000107 MGI:3719540 NCBI chrNW_004936561:3,017,471...3,035,481 JBrowse link
G LOC101959175 amyloid beta precursor protein involved_in ISO PMID:20209079
(PMID:20209079)		 UniProt PMID:20209079 RGD:10400853 NCBI chrNW_004936640:1,549,977...1,787,436 JBrowse link
G LOC101959346 lysozyme C involved_in