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ONTOLOGY REPORT - ANNOTATIONS

Term:detection of biotic stimulus
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Accession:GO:0009595 term browser browse the term
Definition:The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal.
Synonyms:related_synonym: perception of biotic stimulus
 alt_id: GO:0009596


show annotations for term's descendants           Sort by:
detection of biotic stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlrp3 NLR family, pyrin domain containing 3 involved_in ISS
ISO		 GO_REF:0000024
(MGI:7388221|PMID:18403674)
(PMID:18604214)		 UniProt
RGD		 PMID:18403674 PMID:18604214 GO_REF:0000024 MGI:7388221 NCBI chr10:44,326,770...44,353,814
Ensembl chr10:44,328,566...44,352,811 		JBrowse link
contact inhibition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor involved_in ISO
IEA		 (PMID:9422511)
GO_REF:0000107		 RGD
Ensembl		 PMID:9422511 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Tspo translocator protein IDA RGD PMID:18190798 RGD:2317142 NCBI chr 7:114,720,188...114,730,450
Ensembl chr 7:114,720,188...114,730,450 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in ISO
IEA		 (PMID:17974916)
GO_REF:0000107		 RGD
Ensembl		 PMID:17974916 GO_REF:0000107 NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010 		JBrowse link
detection of bacterial lipoprotein term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssc5d scavenger receptor cysteine rich family member with 5 domains involved_in ISO
IBA		 (MGI:4939978|PMID:21217009)
PMID:21873635		 RGD PMID:21217009 PMID:21873635 MGI:4939978, RGD:13792537 NCBI chr 1:68,891,942...68,910,462
Ensembl chr 1:68,891,949...68,909,743 		JBrowse link
detection of bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO (MGI:3027358|PMID:14707091) RGD PMID:14707091 MGI:3027358 NCBI chr12:1,915,902...1,924,529
Ensembl chr12:1,915,919...1,924,539 		JBrowse link
G Naip6 NLR family, apoptosis inhibitory protein 6 involved_in ISO
IBA		 (MGI:5289703|PMID:21874021)
PMID:21873635		 RGD PMID:21874021 PMID:21873635 MGI:5289703, RGD:13792537 NCBI chr 2:31,507,423...31,559,098
Ensembl chr 2:31,507,424...31,570,542 		JBrowse link
G Nlrc4 NLR family, CARD domain containing 4 involved_in ISO
ISS
IBA		 (PMID:15107016)
GO_REF:0000024
(MGI:5444805|PMID:22885697)
PMID:21873635		 RGD
UniProt		 PMID:15107016 PMID:22885697 PMID:21873635 GO_REF:0000024 MGI:5444805, RGD:13792537 NCBI chr 6:20,991,785...21,018,254
Ensembl chr 6:20,995,266...21,018,248 		JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 involved_in ISO (PMID:15653568) RGD PMID:15653568 NCBI chr 4:84,060,871...84,111,668
Ensembl chr 4:84,060,880...84,111,404 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (PMID:15653568) RGD PMID:15653568 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Parg poly (ADP-ribose) glycohydrolase acts_upstream_of_or_within ISO MGI:3052740 (MGI:3052258|PMID:15282315) RGD PMID:15282315 MGI:3052258 NCBI chr16:7,436,429...7,544,276
Ensembl chr16:7,436,476...7,544,273 		JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 involved_in IBA
ISO		 PMID:21873635
(PMID:11461926)		 RGD PMID:11461926 PMID:21873635 RGD:13792537 NCBI chr 1:78,531,815...78,537,001
Ensembl chr 1:78,531,815...78,537,001 		JBrowse link
G Pglyrp2 peptidoglycan recognition protein 2 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 7:11,418,674...11,432,162
Ensembl chr 7:11,418,880...11,427,773 		JBrowse link
G Pglyrp3 peptidoglycan recognition protein 3 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 2:177,479,693...177,490,769
Ensembl chr 2:177,477,407...177,490,736
Ensembl chr 2:177,477,407...177,490,736 		JBrowse link
G Pglyrp4 peptidoglycan recognition protein 4 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 2:176,202,654...176,322,859
Ensembl chr 2:176,218,519...176,242,251 		JBrowse link
detection of cell density term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO
IEA		 MGI:1857283 (MGI:3700897|PMID:17189429)
GO_REF:0000107		 RGD
Ensembl		 PMID:17189429 GO_REF:0000107 MGI:3700897 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236 		JBrowse link
detection of diacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
G Tlr6 toll-like receptor 6 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr14:43,362,164...43,374,500
Ensembl chr14:43,362,164...43,375,685 		JBrowse link
detection of fungus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec7a C-type lectin domain containing 7A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:162,902,731...162,913,931
Ensembl chr 4:162,902,732...162,913,897 		JBrowse link
detection of lipopolysaccharide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp4 caspase 4 involved_in ISO (MGI:5510905|PMID:23887873), (MGI:5511082|PMID:24031018), (MGI:7432483|PMID:30589883) RGD PMID:23887873 PMID:24031018 PMID:30589883 MGI:5510905 MGI:5511082 MGI:7432483 NCBI chr 8:2,599,017...2,635,097
Ensembl chr 8:2,598,876...2,635,092 		JBrowse link
G Ly96 lymphocyte antigen 96 involved_in ISO (PMID:19252480) RGD PMID:19252480 NCBI chr 5:2,582,233...2,612,357
Ensembl chr 5:2,582,254...2,612,386 		JBrowse link
G Nr4a1 nuclear receptor subfamily 4, group A, member 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:7463870|PMID:37001519)		 UniProt
RGD		 PMID:37001519 GO_REF:0000024 MGI:7463870 NCBI chr 7:132,368,399...132,389,300
Ensembl chr 7:132,374,840...132,389,297 		JBrowse link
G Scarb1 scavenger receptor class B, member 1 involved_in ISO
IEA		 (PMID:12651854)
GO_REF:0000107		 RGD
Ensembl		 PMID:12651854 GO_REF:0000107 NCBI chr12:31,296,143...31,362,649
Ensembl chr12:31,296,156...31,362,647 		JBrowse link
G Tlr4 toll-like receptor 4 involved_in ISO
IBA
ISS
IEA		 (PMID:19252480)
PMID:21873635
GO_REF:0000024
(MGI:5913054|PMID:28098138)
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:19252480 PMID:28098138 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5913054, RGD:13792537 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (MGI:5572888|PMID:12847223) RGD PMID:12847223 MGI:5572888 NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
detection of lipoteichoic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (MGI:5572888|PMID:12847223) RGD PMID:12847223 MGI:5572888 NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
detection of molecule of bacterial origin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lbp lipopolysaccharide binding protein involved_in ISO
IEA		 (PMID:11528597)
GO_REF:0000107		 RGD
Ensembl		 PMID:11528597 GO_REF:0000107 NCBI chr 3:146,953,889...146,981,032
Ensembl chr 3:146,954,015...146,981,586 		JBrowse link
G Tlr9 toll-like receptor 9 involved_in ISO (PMID:17128265) RGD PMID:17128265 NCBI chr 8:106,864,680...106,868,796
Ensembl chr 8:106,864,680...106,868,796 		JBrowse link
detection of molecule of fungal origin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec7a C-type lectin domain containing 7A involved_in ISO
IBA		 (MGI:3045647|PMID:15213161)
PMID:21873635		 RGD PMID:15213161 PMID:21873635 MGI:3045647, RGD:13792537 NCBI chr 4:162,902,731...162,913,931
Ensembl chr 4:162,902,732...162,913,897 		JBrowse link
detection of muramyl dipeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:15998797)
(PMID:12527755)		 RGD PMID:12527755 PMID:15998797 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
detection of peptidoglycan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (MGI:5572888|PMID:12847223) RGD PMID:12847223 MGI:5572888 NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
detection of triacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr1 toll-like receptor 1 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr14:43,384,127...43,396,765
Ensembl chr14:43,384,932...43,397,125 		JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
detection of tumor cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crtam cytotoxic and regulatory T cell molecule involved_in ISO
IBA		 (PMID:15811952)
(MGI:3689781|PMID:15811952)
PMID:21873635		 RGD PMID:15811952 PMID:21873635 MGI:3689781, RGD:13792537 NCBI chr 8:41,340,117...41,377,381
Ensembl chr 8:41,340,837...41,377,343 		JBrowse link
detection of yeast term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4a C-type lectin domain family 4, member A involved_in ISO (MGI:5300086|PMID:22041900) RGD PMID:22041900 MGI:5300086 NCBI chr 4:156,340,439...156,434,212
Ensembl chr 4:156,414,688...156,432,402 		JBrowse link
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO (MGI:3027358|PMID:14707091) RGD PMID:14707091 MGI:3027358 NCBI chr12:1,915,902...1,924,529
Ensembl chr12:1,915,919...1,924,539 		JBrowse link
G Clec6a-ps1 C-type lectin domain family 6, member A, pseudogene 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:156,539,408...156,559,032
Ensembl chr 4:156,539,408...156,558,605
Ensembl chr 4:156,539,408...156,558,605 		JBrowse link
G Clec7a C-type lectin domain containing 7A acts_upstream_of_or_within
involved_in		 ISO (MGI:3027477|PMID:14698225)
(MGI:3844414|PMID:19136564)		 RGD PMID:14698225 PMID:19136564 MGI:3027477 MGI:3844414 NCBI chr 4:162,902,731...162,913,931
Ensembl chr 4:162,902,732...162,913,897 		JBrowse link
negative regulation of cell growth involved in contact inhibition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr2 cadherin-related family member 2 involved_in ISO (PMID:12117771) RGD PMID:12117771 NCBI chr17:9,876,853...9,913,356
Ensembl chr17:9,876,860...9,912,575 		JBrowse link
negative regulation of cell proliferation involved in contact inhibition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dach1 dachshund family transcription factor 1 acts_upstream_of_or_within ISO MGI:96646 (MGI:3719935|PMID:17182846) RGD PMID:17182846 MGI:3719935 NCBI chr15:74,528,122...74,909,811
Ensembl chr15:74,529,208...74,909,922 		JBrowse link
G Fap fibroblast activation protein, alpha involved_in ISO (MGI:3047166|PMID:15133496) RGD PMID:15133496 MGI:3047166 NCBI chr 3:47,138,823...47,207,671
Ensembl chr 3:47,138,813...47,225,545 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:12912914)		 UniProt
RGD		 PMID:12912914 GO_REF:0000024 NCBI chr 1:152,111,172...152,226,390
Ensembl chr 1:152,111,188...152,226,383 		JBrowse link
G Srpx sushi-repeat-containing protein, X-linked acts_upstream_of_or_within ISO (MGI:3691893|PMID:12049817) RGD PMID:12049817 MGI:3691893 NCBI chr  X:12,676,984...12,751,296
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19553
    response to stimulus 10408
      detection of stimulus 1613
        detection of biotic stimulus 36
          detection of cell density + 9
          detection of endogenous biotic stimulus 0
          detection of endoplasmic reticulum overloading 0
          detection of external biotic stimulus + 25
          detection of tumor cell 1
paths to the root