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ONTOLOGY REPORT - ANNOTATIONS


Term:detection of biotic stimulus
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Accession:GO:0009595 term browser browse the term
Definition:The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal.
Synonyms:related_synonym: perception of biotic stimulus
 alt_id: GO:0009596


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contact inhibition term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor ISO
IEA
(PMID:9422511)
GO_REF:0000107
RGD
Ensembl
PMID:9422511 GO_REF:0000107 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Tspo translocator protein IDA RGD PMID:18190798 RGD:2317142 NCBI chr 7:124,460,358...124,470,610
Ensembl chr 7:124,460,358...124,470,609
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO (PMID:17974916) RGD PMID:17974916 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
detection of bacterial lipoprotein term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmbt1 deleted in malignant brain tumors 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:201,620,642...201,689,905
NCBI chr 1:203,149,414...203,228,705
JBrowse link
G Ssc5d scavenger receptor cysteine rich family member with 5 domains IBA
ISO
PMID:21873635
(MGI:4939978|PMID:21217009)
RGD PMID:21217009, PMID:21873635 MGI:4939978, RGD:13792537 NCBI chr 1:72,443,750...72,462,293
Ensembl chr 1:72,443,758...72,461,547
JBrowse link
detection of bacterium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4m C-type lectin domain family 4 member M ISO (MGI:3027358|PMID:14707091) RGD PMID:14707091 MGI:3027358 NCBI chr12:2,817,633...2,826,303
Ensembl chr12:2,816,065...2,826,378
JBrowse link
G LOC100364500 RT1 class I, locus CE11-like ISO (PMID:22321387) RGD PMID:22321387 NCBI chr20:2,704,153...2,707,111
Ensembl chr20:2,704,148...2,707,120
JBrowse link
G Naip2 NLR family, apoptosis inhibitory protein 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:30,376,419...30,458,542 JBrowse link
G Naip6 NLR family, apoptosis inhibitory protein 6 ISO (MGI:5289703|PMID:21874021) RGD PMID:21874021 MGI:5289703 NCBI chr 2:30,377,505...30,418,578 JBrowse link
G Nlrc4 NLR family, CARD domain containing 4 ISO
IBA
ISS
(PMID:15107016)
(MGI:5444805|PMID:22885697)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:15107016, PMID:22885697, PMID:21873635 GO_REF:0000024, MGI:5444805, RGD:13792537 NCBI chr 6:22,167,874...22,194,755
Ensembl chr 6:22,167,919...22,194,250
JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 ISO (PMID:15653568) RGD PMID:15653568 NCBI chr 4:85,123,965...85,175,206
Ensembl chr 4:85,123,960...85,174,951
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO (PMID:15653568) RGD PMID:15653568 NCBI chr19:19,342,061...19,389,366
Ensembl chr19:19,332,594...19,377,492
JBrowse link
G Parg poly (ADP-ribose) glycohydrolase ISO MGI:3052740 (MGI:3052258|PMID:15282315) RGD PMID:15282315 MGI:3052258 NCBI chr16:8,350,168...8,457,999
Ensembl chr16:8,350,326...8,457,996
JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:11461926)
Ensembl
RGD
PMID:11461926, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 1:79,790,879...79,796,064
Ensembl chr 1:79,790,705...79,796,111
JBrowse link
G Pglyrp2 peptidoglycan recognition protein 2 ISO
IBA
(PMID:11461926)
PMID:21873635
RGD PMID:11461926, PMID:21873635 RGD:13792537 NCBI chr 7:14,426,481...14,435,987
Ensembl chr 7:14,429,701...14,435,967
JBrowse link
G Pglyrp3 peptidoglycan recognition protein 3 ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 2:191,903,626...192,264,872
Ensembl chr 2:192,253,629...192,264,840
JBrowse link
G Pglyrp4 peptidoglycan recognition protein 4 ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 2:190,125,655...190,204,230
Ensembl chr 2:190,125,693...190,148,265
JBrowse link
G RT1-Db1 RT1 class II, locus Db1 ISO (PMID:22321387) RGD PMID:22321387 NCBI chr20:4,087,621...4,097,190
Ensembl chr20:4,087,618...4,097,190
JBrowse link
detection of diacyl bacterial lipopeptide term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr2 toll-like receptor 2 ISO (PMID:19931471) RGD PMID:19931471 NCBI chr 2:182,840,171...182,846,061
Ensembl chr 2:182,840,727...182,846,061
JBrowse link
G Tlr6 toll-like receptor 6 ISO (PMID:19931471) RGD PMID:19931471 NCBI chr14:45,024,351...45,041,188
Ensembl chr14:45,024,351...45,046,446
JBrowse link
detection of fungus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec7a C-type lectin domain containing 7A ISO
IBA
(PMID:19358895)
PMID:21873635
RGD PMID:19358895, PMID:21873635 RGD:13792537 NCBI chr 4:163,216,152...163,227,367
Ensembl chr 4:163,216,163...163,227,334
JBrowse link
detection of lipopolysaccharide term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ly96 lymphocyte antigen 96 ISO (PMID:19252480) RGD PMID:19252480 NCBI chr 5:1,972,212...1,989,448 JBrowse link
G Scarb1 scavenger receptor class B, member 1 ISO (PMID:12651854) RGD PMID:12651854 NCBI chr12:36,694,952...36,761,445
Ensembl chr12:36,694,960...36,761,455
JBrowse link
G Tlr4 toll-like receptor 4 ISO
IEA
ISS
(PMID:19252480)
(MGI:5913054|PMID:28098138)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:19252480, PMID:28098138 GO_REF:0000024, GO_REF:0000107, MGI:5913054 NCBI chr 5:82,587,424...82,601,056
Ensembl chr 5:82,587,420...82,601,052
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 ISO (MGI:5572888|PMID:12847223) RGD PMID:12847223 MGI:5572888 NCBI chr 9:14,611,541...14,618,076
Ensembl chr 9:14,611,561...14,618,013
JBrowse link
detection of lipoteichoic acid term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trem2 triggering receptor expressed on myeloid cells 2 ISO (MGI:5572888|PMID:12847223) RGD PMID:12847223 MGI:5572888 NCBI chr 9:14,611,541...14,618,076
Ensembl chr 9:14,611,561...14,618,013
JBrowse link
detection of molecule of bacterial origin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C4b complement C4B (Chido blood group) ISO (PMID:22333221) RGD PMID:22333221 NCBI chr20:4,302,344...4,316,752
Ensembl chr20:4,302,344...4,316,715
JBrowse link
G Lbp lipopolysaccharide binding protein ISO
IEA
(PMID:11528597)
GO_REF:0000107
RGD
Ensembl
PMID:11528597 GO_REF:0000107 NCBI chr 3:154,786,232...154,812,910
Ensembl chr 3:154,786,215...154,813,464
JBrowse link
detection of molecule of fungal origin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec7a C-type lectin domain containing 7A ISO
IBA
(PMID:19358895)
PMID:21873635
RGD PMID:19358895, PMID:21873635 RGD:13792537 NCBI chr 4:163,216,152...163,227,367
Ensembl chr 4:163,216,163...163,227,334
JBrowse link
detection of muramyl dipeptide term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO (PMID:12527755), (PMID:15998797) RGD PMID:12527755, PMID:15998797 NCBI chr19:19,342,061...19,389,366
Ensembl chr19:19,332,594...19,377,492
JBrowse link
detection of peptidoglycan term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trem2 triggering receptor expressed on myeloid cells 2 ISO (MGI:5572888|PMID:12847223) RGD PMID:12847223 MGI:5572888 NCBI chr 9:14,611,541...14,618,076
Ensembl chr 9:14,611,561...14,618,013
JBrowse link
detection of stimulus involved in cell cycle checkpoint term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trex1 three prime repair exonuclease 1 ISO (MGI:3818783|PMID:18045533) RGD PMID:18045533 MGI:3818783 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
detection of triacyl bacterial lipopeptide term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr1 toll-like receptor 1 ISO (PMID:19931471) RGD PMID:19931471 NCBI chr14:45,062,662...45,065,014
Ensembl chr14:45,062,662...45,081,991
JBrowse link
G Tlr2 toll-like receptor 2 ISO (PMID:19931471) RGD PMID:19931471 NCBI chr 2:182,840,171...182,846,061
Ensembl chr 2:182,840,727...182,846,061
JBrowse link
detection of tumor cell term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crtam cytotoxic and regulatory T cell molecule ISO
IBA
(PMID:15811952)
(MGI:3689781|PMID:15811952)
PMID:21873635
RGD PMID:15811952, PMID:21873635 MGI:3689781, RGD:13792537 NCBI chr 8:45,152,584...45,216,082
Ensembl chr 8:45,153,308...45,215,974
JBrowse link
detection of yeast term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4m C-type lectin domain family 4 member M ISO (MGI:3027358|PMID:14707091) RGD PMID:14707091 MGI:3027358 NCBI chr12:2,817,633...2,826,303
Ensembl chr12:2,816,065...2,826,378
JBrowse link
negative regulation of cell growth involved in contact inhibition term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr2 cadherin-related family member 2 ISO (PMID:12117771) RGD PMID:12117771 NCBI chr17:10,415,044...10,450,589
Ensembl chr17:10,415,123...10,439,691
JBrowse link
negative regulation of cell proliferation involved in contact inhibition term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dach1 dachshund family transcription factor 1 ISO MGI:96646 (MGI:3719935|PMID:17182846) RGD PMID:17182846 MGI:3719935 NCBI chr15:82,095,003...82,482,272
Ensembl chr15:82,099,159...82,482,009
JBrowse link
G Fap fibroblast activation protein, alpha ISO (MGI:3047166|PMID:15133496) RGD PMID:15133496 MGI:3047166 NCBI chr 3:48,467,781...48,536,242
Ensembl chr 3:48,467,781...48,536,235
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 ISO
ISS
(PMID:12912914)
GO_REF:0000024
RGD
UniProt
PMID:12912914 GO_REF:0000024 NCBI chr 1:162,768,156...162,883,356
Ensembl chr 1:162,768,156...162,883,355
JBrowse link
G Srpx sushi-repeat-containing protein, X-linked ISO (MGI:3691893|PMID:12049817) RGD PMID:12049817 MGI:3691893 NCBI chr  X:14,146,618...14,220,756
Ensembl chr  X:14,150,038...14,220,662
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    response to stimulus 10580
      detection of stimulus 1738
        detection of biotic stimulus 35
          detection of cell density + 8
          detection of endogenous biotic stimulus + 1
          detection of endoplasmic reticulum overloading 0
          detection of external biotic stimulus + 25
          detection of tumor cell 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.