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ONTOLOGY REPORT - ANNOTATIONS

Term:detection of visible light
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Accession:GO:0009584 term browser browse the term
Definition:The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.
Synonyms:related_synonym: perception of visible light


show annotations for term's descendants           Sort by:
detection of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELOVL4 ELOVL fatty acid elongase 4 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:79,914,814...79,947,553
Ensembl chr 6:79,914,814...79,947,553 		JBrowse link
G GPR52 G protein-coupled receptor 52 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:174,447,964...174,449,545
Ensembl chr 1:174,447,964...174,449,545 		JBrowse link
G GPR88 G protein-coupled receptor 88 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:100,538,139...100,542,021
Ensembl chr 1:100,538,139...100,542,021 		JBrowse link
G GRM6 glutamate metabotropic receptor 6 involved_in TAS (PMID:9215706) PINC PMID:9215706 NCBI chr 5:178,978,327...178,995,320
Ensembl chr 5:178,977,587...178,996,206 		JBrowse link
G IRX6 iroquois homeobox 6 acts_upstream_of_or_within ISO (PMID:23172916) MGI PMID:23172916 NCBI chr16:55,324,203...55,330,756
Ensembl chr16:55,324,203...55,330,756 		JBrowse link
G OPN1LW opsin 1, long wave sensitive involved_in IEA GOC GO_REF:0000108 NCBI chr  X:154,144,243...154,159,032
Ensembl chr  X:154,144,243...154,159,032 		JBrowse link
G OPN1MW opsin 1, medium wave sensitive involved_in IEA GOC GO_REF:0000108 NCBI chr  X:154,182,596...154,196,861
Ensembl chr  X:154,182,596...154,196,861 		JBrowse link
G OPN1MW2 opsin 1, medium wave sensitive 2 involved_in IEA GOC GO_REF:0000108 NCBI chr  X:154,219,756...154,233,286
Ensembl chr  X:154,219,756...154,233,286 		JBrowse link
G OPN1MW3 opsin 1, medium wave sensitive 3 involved_in IEA GOC GO_REF:0000108 NCBI chr  X:154,257,582...154,271,090
Ensembl chr  X:154,257,582...154,271,090 		JBrowse link
G OPN1SW opsin 1, short wave sensitive involved_in IEA GOC GO_REF:0000108 NCBI chr 7:128,772,485...128,775,794
Ensembl chr 7:128,772,485...128,775,794 		JBrowse link
G OPN3 opsin 3 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
Ensembl chr 1:241,590,102...241,677,376 		JBrowse link
G OPN4 opsin 4 involved_in IEA GOC GO_REF:0000108 NCBI chr10:86,654,547...86,666,460
Ensembl chr10:86,654,518...86,666,460 		JBrowse link
G OPN5 opsin 5 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:47,782,032...47,826,381
Ensembl chr 6:47,781,982...47,832,780 		JBrowse link
G RGR retinal G protein coupled receptor involved_in IEA GOC GO_REF:0000108 NCBI chr10:84,245,053...84,259,960
Ensembl chr10:84,230,666...84,259,960 		JBrowse link
G RRH retinal pigment epithelium-derived rhodopsin homolog involved_in IEA GOC GO_REF:0000108 NCBI chr 4:109,827,972...109,844,942
Ensembl chr 4:109,827,972...109,849,123 		JBrowse link
detection of light stimulus involved in visual perception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP8A2 ATPase phospholipid transporting 8A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:25,371,974...26,025,851
Ensembl chr13:25,371,974...26,025,851 		JBrowse link
G BEST1 bestrophin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16636205) Ensembl
MGI		 PMID:16636205 GO_REF:0000107 NCBI chr11:61,949,821...61,965,515
Ensembl chr11:61,950,063...61,965,515 		JBrowse link
G CACNA1F calcium voltage-gated channel subunit alpha1 F involved_in IMP (PMID:7571473) UniProt PMID:7571473 NCBI chr  X:49,205,063...49,233,340
Ensembl chr  X:49,205,063...49,233,371 		JBrowse link
G CACNA2D4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 involved_in IMP (PMID:17033974) UniProt PMID:17033974 NCBI chr12:1,791,963...1,918,652
Ensembl chr12:1,791,963...1,918,666 		JBrowse link
G CACNB4 calcium voltage-gated channel auxiliary subunit beta 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16636205) Ensembl
MGI		 PMID:16636205 GO_REF:0000107 NCBI chr 2:151,832,771...152,099,167
Ensembl chr 2:151,832,771...152,099,167 		JBrowse link
G CCDC66 coiled-coil domain containing 66 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:56,557,156...56,621,837
Ensembl chr 3:56,557,161...56,621,837 		JBrowse link
G CEP250 centrosomal protein 250 involved_in ISS UniProt GO_REF:0000024 NCBI chr20:35,455,165...35,519,280
Ensembl chr20:35,455,164...35,519,280 		JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 involved_in IMP (PMID:15557452) UniProt PMID:15557452 NCBI chr16:57,882,340...57,971,128
Ensembl chr16:57,882,340...57,971,128 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22447858) Ensembl
MGI		 PMID:22447858 GO_REF:0000107 NCBI chr 1:197,201,504...197,478,455
Ensembl chr 1:197,268,204...197,478,455 		JBrowse link
G EYS eyes shut homolog involved_in IMP (PMID:18836446), (PMID:18976725), (PMID:20696082), (PMID:22363543) UniProt PMID:18836446 PMID:18976725 PMID:20696082 PMID:22363543 NCBI chr 6:63,719,980...65,707,226
Ensembl chr 6:63,719,980...65,707,226 		JBrowse link
G GJA10 gap junction protein alpha 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16820008) Ensembl
MGI		 PMID:16820008 GO_REF:0000107 NCBI chr 6:89,894,469...89,896,120
Ensembl chr 6:89,894,469...89,921,760 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA
IMP		 (PMID:18171936)
(PMID:17584859)		 Ensembl
MGI
GO_Central
UniProt		 PMID:17584859 PMID:18171936 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
IMP		 (PMID:17065522)
(PMID:12077706)		 Ensembl
MGI
UniProt		 PMID:12077706 PMID:17065522 GO_REF:0000107 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,091...109,619,929 		JBrowse link
G GRM6 glutamate metabotropic receptor 6 involved_in IMP (PMID:17405131) UniProt PMID:17405131 NCBI chr 5:178,978,327...178,995,320
Ensembl chr 5:178,977,587...178,996,206 		JBrowse link
G GUCY2F guanylate cyclase 2F, retinal involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:109,372,906...109,482,086
Ensembl chr  X:109,372,906...109,482,086 		JBrowse link
G PRPH2 peripherin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28053051)
(PMID:26420485)		 Ensembl
MGI		 PMID:26420485 PMID:28053051 GO_REF:0000107 NCBI chr 6:42,696,598...42,722,597
Ensembl chr 6:42,696,598...42,722,597 		JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of_or_within ISO (PMID:12484775) MGI PMID:12484775 NCBI chr10:93,591,694...93,601,744
Ensembl chr10:93,591,687...93,601,744 		JBrowse link
G REEP6 receptor accessory protein 6 involved_in IMP (PMID:27889058) UniProt PMID:27889058 NCBI chr19:1,491,181...1,497,927
Ensembl chr19:1,491,166...1,497,927 		JBrowse link
G RGS9BP regulator of G protein signaling 9 binding protein involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:14625292) Ensembl
MGI
GO_Central
TreeGrafter		 PMID:14625292 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr19:32,675,848...32,678,300
Ensembl chr19:32,675,848...32,678,300 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28053051) Ensembl
MGI		 PMID:28053051 GO_REF:0000107 NCBI chr11:62,613,257...62,615,116
Ensembl chr11:62,611,722...62,615,116 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in IMP (PMID:15557452) UniProt PMID:15557452 NCBI chr 1:68,428,822...68,449,954
Ensembl chr 1:68,428,822...68,449,954 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 involved_in ISO (PMID:21521437) CACAO PMID:21521437 NCBI chr14:21,280,083...21,351,301
Ensembl chr14:21,280,083...21,351,301 		JBrowse link
G SEMA5A semaphorin 5A acts_upstream_of_or_within ISO (PMID:21835343) MGI PMID:21835343 NCBI chr 5:9,035,033...9,546,075
Ensembl chr 5:9,035,033...9,546,075 		JBrowse link
G SEMA5B semaphorin 5B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21835343) Ensembl
MGI		 PMID:21835343 GO_REF:0000107 NCBI chr 3:122,909,082...123,028,605
Ensembl chr 3:122,909,082...123,028,605 		JBrowse link
G TULP1 TUB like protein 1 involved_in IMP (PMID:15557452) UniProt PMID:15557452 NCBI chr 6:35,497,874...35,512,896
Ensembl chr 6:35,497,874...35,512,896 		JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 involved_in TAS (PMID:9202155) PINC PMID:9202155 NCBI chr 1:93,992,834...94,121,148
Ensembl chr 1:93,992,834...94,121,148 		JBrowse link
G AIPL1 aryl hydrocarbon receptor interacting protein like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15365173) Ensembl
MGI		 PMID:15365173 GO_REF:0000107 NCBI chr17:6,423,738...6,435,121
Ensembl chr17:6,393,693...6,435,199 		JBrowse link
G CHRM1 cholinergic receptor muscarinic 1 involved_in ISO (PMID:12196552) AgBase PMID:12196552 NCBI chr11:62,908,679...62,921,878
Ensembl chr11:62,908,679...62,921,807 		JBrowse link
G GNA11 G protein subunit alpha 11 involved_in ISS AgBase GO_REF:0000024 NCBI chr19:3,094,362...3,123,999
Ensembl chr19:3,094,362...3,123,999 		JBrowse link
G GNAQ G protein subunit alpha q involved_in ISS AgBase GO_REF:0000024 NCBI chr 9:77,716,097...78,031,811
Ensembl chr 9:77,716,097...78,031,811 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in IMP
IBA		 (PMID:17584859) UniProt
GO_Central		 PMID:17584859 GO_REF:0000033 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G PDE6B phosphodiesterase 6B involved_in TAS (PMID:8394174) PINC PMID:8394174 NCBI chr 4:625,573...670,782
Ensembl chr 4:625,573...670,782 		JBrowse link
G PDE6C phosphodiesterase 6C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16723493) Ensembl
MGI		 PMID:16723493 GO_REF:0000107 NCBI chr10:93,612,537...93,666,010
Ensembl chr10:93,612,537...93,666,010 		JBrowse link
G RHO rhodopsin involved_in TAS (PMID:1418997) PINC PMID:1418997 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in TAS (PMID:10391211) PINC PMID:10391211 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720 		JBrowse link
regulation of opsin-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIPL1 aryl hydrocarbon receptor interacting protein like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15365178)
(PMID:15365173)		 Ensembl
MGI		 PMID:15365173 PMID:15365178 GO_REF:0000107 NCBI chr17:6,423,738...6,435,121
Ensembl chr17:6,393,693...6,435,199 		JBrowse link
G CAMKMT calmodulin-lysine N-methyltransferase involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr 2:44,361,947...44,772,592
Ensembl chr 2:44,361,947...44,772,592 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 involved_in IDA
IEA
TAS		 (PMID:15946941) UniProt
InterPro
Reactome		 PMID:15946941 GO_REF:0000002 Reactome:R-HSA-2514859 NCBI chr13:113,648,199...113,737,736
Ensembl chr13:113,667,219...113,737,736 		JBrowse link
G GRK4 G protein-coupled receptor kinase 4 involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr 4:2,963,571...3,040,760
Ensembl chr 4:2,963,571...3,040,760 		JBrowse link
G GRK7 G protein-coupled receptor kinase 7 involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr 3:141,749,984...141,819,352
Ensembl chr 3:141,763,408...141,819,352 		JBrowse link
G GUCY2D guanylate cyclase 2D, retinal involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr17:8,002,615...8,020,342
Ensembl chr17:8,002,615...8,020,342 		JBrowse link
G GUCY2F guanylate cyclase 2F, retinal involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr  X:109,372,906...109,482,086
Ensembl chr  X:109,372,906...109,482,086 		JBrowse link
G NMT1 N-myristoyltransferase 1 involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr17:45,061,317...45,109,016
Ensembl chr17:44,957,992...45,109,016 		JBrowse link
G NMT2 N-myristoyltransferase 2 involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr10:15,105,700...15,168,693
Ensembl chr10:15,102,584...15,168,693 		JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNAT1 G protein subunit alpha transducin 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:11931744 GO_REF:0000107 RGD:1599009 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 involved_in TAS (PMID:1656454), (PMID:9147475), (PMID:9478965) UniProt PMID:1656454 PMID:9147475 PMID:9478965 NCBI chr13:113,648,199...113,737,736
Ensembl chr13:113,667,219...113,737,736 		JBrowse link
G PCP2 Purkinje cell protein 2 acts_upstream_of_or_within ISO (PMID:18768681) MGI PMID:18768681 NCBI chr19:7,631,615...7,637,006
Ensembl chr19:7,631,611...7,633,719 		JBrowse link
G RHO rhodopsin involved_in ISO
ISS
TAS		 (PMID:8107847) RGD
UniProt
PINC		 PMID:8107847 PMID:8814134 GO_REF:0000024 RGD:6893595 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344 		JBrowse link
G SAG S-antigen visual arrestin involved_in TAS (PMID:2550422), (PMID:7670478) PINC PMID:2550422 PMID:7670478 NCBI chr 2:233,307,816...233,347,055
Ensembl chr 2:233,307,816...233,347,055 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19770
    response to stimulus 10237
      detection of stimulus 732
        detection of external stimulus 173
          detection of light stimulus 77
            detection of visible light 57
              detection of light stimulus involved in visual perception 25
              phototransduction, visible light + 20
Path 2
Term Annotations click to browse term
  biological_process 19770
    response to stimulus 10237
      response to abiotic stimulus 1667
        response to radiation 561
          response to light stimulus 405
            detection of light stimulus 77
              detection of visible light 57
                detection of light stimulus involved in visual perception 25
                phototransduction, visible light + 20
paths to the root