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ONTOLOGY REPORT - ANNOTATIONS

Term:detection of light stimulus
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Accession:GO:0009583 term browser browse the term
Definition:The series of events in which a light stimulus (in the form of photons) is received and converted into a molecular signal.
Synonyms:exact_synonym: detection of light
 related_synonym: perception of light

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show annotations for term's descendants           Sort by:
detection of light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Pde6b phosphodiesterase 6B acts_upstream_of_or_within ISO (PMID:11747369) MGI PMID:11747369 NCBI chrNW_004955514:234,972...279,420
Ensembl chrNW_004955514:234,972...279,420 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO (PMID:11747369) MGI PMID:11747369 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982 		JBrowse link
detection of light stimulus involved in visual perception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Best1 bestrophin 1 acts_upstream_of_or_within ISO (PMID:16636205) MGI PMID:16636205 NCBI chrNW_004955511:5,773,025...5,783,800
Ensembl chrNW_004955511:5,773,670...5,780,540 		JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F involved_in ISO (PMID:7571473) UniProt PMID:7571473 NCBI chrNW_004955543:692,035...717,364
Ensembl chrNW_004955543:692,035...717,364 		JBrowse link
G Cacna2d4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 involved_in ISO (PMID:17033974) UniProt PMID:17033974 NCBI chrNW_004955454:4,329,520...4,430,460
Ensembl chrNW_004955454:4,331,370...4,430,508 		JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO (PMID:16636205) MGI PMID:16636205 NCBI chrNW_004955440:17,364,996...17,497,446
Ensembl chrNW_004955440:17,371,321...17,497,616 		JBrowse link
G Ccdc66 coiled-coil domain containing 66 involved_in ISO (MGI:5141557|PMID:21680557) CACAO PMID:21680557 MGI:5141557 NCBI chrNW_004955430:6,402,622...6,440,154
Ensembl chrNW_004955430:6,402,701...6,439,985 		JBrowse link
G Cep250 centrosomal protein 250 involved_in ISO (MGI:6317055|PMID:30998843) UniProt PMID:30998843 MGI:6317055 NCBI chrNW_004955422:25,932,377...25,978,524 JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 involved_in ISO (PMID:15557452) UniProt PMID:15557452 NCBI chrNW_004955433:15,467,042...15,556,471 JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:22447858) MGI PMID:22447858 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943 		JBrowse link
G Gja10 gap junction protein alpha 10 acts_upstream_of_or_within ISO (PMID:16820008) MGI PMID:16820008 NCBI chrNW_004955411:16,586,673...16,601,999
Ensembl chrNW_004955411:16,593,576...16,595,042 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:17584859)
(PMID:18171936)		 UniProt
MGI		 PMID:17584859 PMID:18171936 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:12077706)
(PMID:17065522)		 UniProt
MGI		 PMID:12077706 PMID:17065522 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Grm6 glutamate metabotropic receptor 6 involved_in ISO (PMID:17405131) UniProt PMID:17405131 NCBI chrNW_004955408:1,421,132...1,432,010
Ensembl chrNW_004955408:1,421,132...1,433,622 		JBrowse link
G Gucy2f guanylate cyclase 2F, retinal involved_in ISO (MGI:3708225|PMID:17255100) CACAO PMID:17255100 MGI:3708225 NCBI chrNW_004955490:6,331,247...6,437,563
Ensembl chrNW_004955490:6,331,247...6,437,563 		JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO (PMID:28053051)
(PMID:26420485)		 MGI PMID:26420485 PMID:28053051 NCBI chrNW_004955437:8,784,211...8,794,789
Ensembl chrNW_004955437:8,782,183...8,795,017 		JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO (PMID:12484775) MGI PMID:12484775 NCBI chrNW_004955507:112,342...120,050
Ensembl chrNW_004955507:108,669...120,584 		JBrowse link
G Reep6 receptor accessory protein 6 involved_in ISO (PMID:27889058) UniProt PMID:27889058 NCBI chrNW_004955764:17,640...22,996
Ensembl chrNW_004955764:3,793...23,152 		JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein acts_upstream_of_or_within ISO (PMID:14625292) MGI PMID:14625292 NCBI chrNW_004955468:5,311,318...5,313,612
Ensembl chrNW_004955468:5,312,880...5,313,587 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:28053051) MGI PMID:28053051 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 involved_in ISO (PMID:15557452) UniProt PMID:15557452 NCBI chrNW_004955423:23,184,326...23,208,206
Ensembl chrNW_004955423:23,183,937...23,208,282 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 involved_in ISO (PMID:21521437) CACAO PMID:21521437 NCBI chrNW_004955550:2,015,319...2,073,627
Ensembl chrNW_004955550:2,021,838...2,073,498 		JBrowse link
G Sema5a semaphorin 5A acts_upstream_of_or_within ISO (PMID:21835343) MGI PMID:21835343 NCBI chrNW_004955504:6,343,747...6,691,945
Ensembl chrNW_004955504:6,350,866...6,762,104 		JBrowse link
G Sema5b semaphorin 5B acts_upstream_of_or_within ISO (PMID:21835343) MGI PMID:21835343 NCBI chrNW_004955427:22,109,946...22,219,497
Ensembl chrNW_004955427:22,109,607...22,180,602 		JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (PMID:15557452) UniProt PMID:15557452 NCBI chrNW_004955437:3,405,218...3,417,079 JBrowse link
detection of UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fech ferrochelatase acts_upstream_of_or_within ISO (PMID:12149233) MGI PMID:12149233 NCBI chrNW_004955402:41,902,868...41,938,099
Ensembl chrNW_004955402:41,902,868...41,938,174 		JBrowse link
detection of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO (PMID:23172916) MGI PMID:23172916 NCBI chrNW_004955433:12,889,025...12,895,090
Ensembl chrNW_004955433:12,889,001...12,895,121 		JBrowse link
phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb1 arrestin beta 1 acts_upstream_of_or_within ISO (PMID:11853756) MGI PMID:11853756 NCBI chrNW_004955414:16,478,843...16,568,050
Ensembl chrNW_004955414:16,478,843...16,562,135 		JBrowse link
G Asic2 acid sensing ion channel subunit 2 acts_upstream_of_or_within ISO (PMID:14762118) MGI PMID:14762118 NCBI chrNW_004955481:7,850,730...8,093,255
Ensembl chrNW_004955481:7,850,710...8,871,794 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO (PMID:16249514) MGI PMID:16249514 NCBI chrNW_004955422:18,023,639...18,028,845
Ensembl chrNW_004955422:18,023,639...18,028,845 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within ISO (PMID:15634774) MGI PMID:15634774 NCBI chrNW_004955433:15,467,042...15,556,471 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:11095744), (PMID:11853756), (PMID:15073279), (PMID:16249514), (PMID:17881533), (PMID:18367617) MGI PMID:11095744 PMID:11853756 PMID:15073279 PMID:16249514 PMID:17881533 More... NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:17408617), (PMID:18171936)
(PMID:29518352)		 MGI PMID:17408617 PMID:18171936 PMID:29518352 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO (PMID:18367617) MGI PMID:18367617 NCBI chrNW_004955432:10,653,508...10,657,811
Ensembl chrNW_004955432:10,643,674...10,658,933 		JBrowse link
G Guca1a guanylate cyclase activator 1A acts_upstream_of_or_within ISO (PMID:11493703), (PMID:15173221) MGI PMID:11493703 PMID:15173221 NCBI chrNW_004955437:8,370,553...8,382,640
Ensembl chrNW_004955437:8,376,091...8,382,640 		JBrowse link
G Guca1b guanylate cyclase activator 1B acts_upstream_of_or_within ISO (PMID:11493703), (PMID:15173221) MGI PMID:11493703 PMID:15173221 NCBI chrNW_004955437:8,384,692...8,390,946
Ensembl chrNW_004955437:8,382,299...8,390,946 		JBrowse link
G Opn4 opsin 4 involved_in ISO (MGI:2667269|PMID:12808468)
(PMID:15674244)		 RGD
UniProt		 PMID:11834834 PMID:12808468 PMID:15674244 MGI:2667269 RGD:633348 NCBI chrNW_004955510:5,723,804...5,736,070
Ensembl chrNW_004955510:5,724,120...5,736,135 		JBrowse link
G Opn5 opsin 5 involved_in ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004955437:12,171,544...12,197,409
Ensembl chrNW_004955437:12,171,544...12,213,264 		JBrowse link
G Rcvrn recoverin acts_upstream_of_or_within ISO (PMID:15173221) MGI PMID:15173221 NCBI chrNW_004955467:7,220,237...7,236,450
Ensembl chrNW_004955467:7,220,237...7,236,450 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO (PMID:16723493) MGI PMID:16723493 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982 		JBrowse link
G Slc24a4 solute carrier family 24 member 4 acts_upstream_of ISO (MGI:6116933|PMID:28650316) ARUK-UCL PMID:28650316 MGI:6116933 NCBI chrNW_004955438:14,609,779...14,765,516
Ensembl chrNW_004955438:14,609,424...14,759,673 		JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 involved_in ISO (PMID:22043319)
(MGI:6230806|PMID:22043319)		 UniProt PMID:22043319 MGI:6230806 NCBI chrNW_004955437:12,171,544...12,197,409
Ensembl chrNW_004955437:12,171,544...12,213,264 		JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor interacting protein like 1 acts_upstream_of_or_within ISO (PMID:15365173) MGI PMID:15365173 NCBI chrNW_004955467:11,952,940...11,962,147
Ensembl chrNW_004955467:11,952,495...11,962,153 		JBrowse link
G Chrm1 cholinergic receptor muscarinic 1 involved_in ISO (PMID:12196552) AgBase PMID:12196552 NCBI chrNW_004955599:349,744...356,714
Ensembl chrNW_004955599:349,744...356,714 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 involved_in ISO (PMID:17584859) UniProt PMID:17584859 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO (PMID:16723493) MGI PMID:16723493 NCBI chrNW_004955507:129,678...179,586
Ensembl chrNW_004955507:129,678...179,305 		JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin ISO RGD PMID:2525480 RGD:6893558 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982 		JBrowse link
regulation of opsin-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor interacting protein like 1 acts_upstream_of_or_within ISO (PMID:15365173)
(PMID:15365178)		 MGI PMID:15365173 PMID:15365178 NCBI chrNW_004955467:11,952,940...11,962,147
Ensembl chrNW_004955467:11,952,495...11,962,153 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 involved_in ISO (PMID:15946941) UniProt PMID:15946941 NCBI chrNW_004955404:343,009...353,683
Ensembl chrNW_004955404:343,009...353,683 		JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Pcp2 Purkinje cell protein 2 acts_upstream_of_or_within ISO (PMID:18768681) MGI PMID:18768681 NCBI chrNW_004955563:1,625,249...1,628,776
Ensembl chrNW_004955563:1,625,254...1,628,776 		JBrowse link
G Rho rhodopsin ISO RGD PMID:8814134 RGD:6893595 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12346
    response to stimulus 6681
      detection of stimulus 191
        detection of external stimulus 127
          detection of light stimulus 42
            detection of UV + 2
            detection of light stimulus involved in sensory perception + 23
            detection of visible light + 30
            light absorption + 0
            phototransduction + 19
Path 2
Term Annotations click to browse term
  biological_process 12346
    response to stimulus 6681
      response to abiotic stimulus 1383
        response to radiation 484
          response to light stimulus 344
            detection of light stimulus 42
              detection of UV + 2
              detection of light stimulus involved in sensory perception + 23
              detection of visible light + 30
              light absorption + 0
              phototransduction + 19
paths to the root