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ONTOLOGY REPORT - ANNOTATIONS


Term:detection of abiotic stimulus
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Accession:GO:0009582 term browser browse the term
Definition:The series of events in which an (non-living) abiotic stimulus is received by a cell and converted into a molecular signal.
Synonyms:related_synonym: perception of abiotic stimulus



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absorption of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
detection of cold stimulus involved in thermoception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grik2 glutamate ionotropic receptor kainate type subunit 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:6414684|PMID:31474366)
UniProt
RGD
PMID:31474366 GO_REF:0000024 MGI:6414684 NCBI chr20:52,135,325...52,833,061
Ensembl chr20:52,133,851...52,838,375
JBrowse link
detection of gravity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nox3 NADPH oxidase 3 acts_upstream_of_or_within ISO MGI:1856606 (PMID:10491954) RGD PMID:10491954 NCBI chr 1:44,238,012...44,302,851
Ensembl chr 1:44,236,992...44,302,851
JBrowse link
G Otop1 otopetrin 1 acts_upstream_of_or_within ISO MGI:1856638|MGI:2655558 (PMID:12651873) RGD PMID:12651873 NCBI chr14:72,505,036...72,532,497
Ensembl chr14:72,503,592...72,532,497
JBrowse link
detection of hot stimulus involved in thermoception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr47 WD repeat domain 47 acts_upstream_of_or_within ISO MGI:6102912 (PMID:29078390) RGD PMID:29078390 NCBI chr 2:196,226,757...196,287,739
Ensembl chr 2:196,205,238...196,287,739
JBrowse link
detection of light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779|MGI:95779 (PMID:19815523) RGD PMID:19815523 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845|MGI:95778 (PMID:19815523) RGD PMID:19815523 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
G Pde6b phosphodiesterase 6B acts_upstream_of_or_within ISO MGI:1856373 (PMID:11747369) RGD PMID:11747369 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450
JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO MGI:2181812 (PMID:11747369) RGD PMID:11747369 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
detection of light stimulus involved in visual perception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in ISO (MGI:5574432|PMID:24413176) RGD PMID:24413176 MGI:5574432 NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223
JBrowse link
G Best1 bestrophin 1 acts_upstream_of_or_within ISO MGI:3795281 (PMID:16636205) RGD PMID:16636205 NCBI chr 1:206,629,340...206,646,085
Ensembl chr 1:206,629,500...206,646,063
JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F involved_in ISO (PMID:7571473) RGD PMID:7571473 NCBI chr  X:14,868,096...14,896,413
Ensembl chr  X:14,868,024...14,896,413
JBrowse link
G Cacna2d4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 involved_in ISO (PMID:17033974) RGD PMID:17033974 NCBI chr 4:152,408,588...152,521,478
Ensembl chr 4:152,408,657...152,521,268
JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO MGI:1856936 (PMID:16636205) RGD PMID:16636205 NCBI chr 3:36,906,771...37,169,165
Ensembl chr 3:36,910,427...37,168,944
JBrowse link
G Ccdc66 coiled-coil domain containing 66 involved_in ISO (MGI:5141557|PMID:21680557) RGD PMID:21680557 MGI:5141557 NCBI chr16:2,662,125...2,694,031
Ensembl chr16:2,662,131...2,694,023
JBrowse link
G Cep250 centrosomal protein 250 involved_in ISO (MGI:6317055|PMID:30998843) RGD PMID:30998843 MGI:6317055 NCBI chr 3:144,470,946...144,516,125
Ensembl chr 3:144,471,214...144,516,125
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:22447858) RGD PMID:22447858 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Gja10 gap junction protein, alpha 10 acts_upstream_of_or_within ISO MGI:3043946 (PMID:16820008) RGD PMID:16820008 NCBI chr 5:46,991,051...47,002,902
Ensembl chr 5:46,992,946...46,996,570
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:17584859)
MGI:2152779 (PMID:18171936)
GO_REF:0000033
RGD
GO_Central
PMID:17584859 PMID:18171936 GO_REF:0000033 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within
ISO (PMID:12077706)
MGI:3588845 (PMID:17065522)
RGD PMID:12077706 PMID:17065522 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
G Grm6 glutamate metabotropic receptor 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:17405131)
UniProt
RGD
PMID:17405131 GO_REF:0000024 NCBI chr10:35,167,985...35,182,717
Ensembl chr10:35,167,985...35,182,717
JBrowse link
G Gucy2f guanylate cyclase 2F involved_in ISO (MGI:3708225|PMID:17255100) RGD PMID:17255100 MGI:3708225 NCBI chr  X:105,710,356...105,808,183
Ensembl chr  X:105,710,356...105,808,183
JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO MGI:1856523|MGI:6367783|MGI:6367794|MGI:97998 (PMID:26420485), (PMID:28053051) RGD PMID:26420485 PMID:28053051 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454
JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO MGI:2445721 (PMID:12484775) RGD PMID:12484775 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Reep6 receptor accessory protein 6 involved_in ISO
ISS
(PMID:27889058)
GO_REF:0000024
RGD
UniProt
PMID:27889058 GO_REF:0000024 NCBI chr 7:9,373,927...9,380,845
Ensembl chr 7:9,373,927...9,380,597
JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3028628 (PMID:14625292)
GO_Central
RGD
PMID:14625292 GO_REF:0000033 NCBI chr 1:88,249,438...88,250,151
Ensembl chr 1:88,249,438...88,250,151
JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO MGI:102791 (PMID:28053051) RGD PMID:28053051 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link
G Rpgrip1 RPGR interacting protein 1 involved_in ISO (PMID:21521437) RGD PMID:21521437 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
JBrowse link
G Sema5a semaphorin 5A acts_upstream_of_or_within ISO MGI:107555 (PMID:21835343) RGD PMID:21835343 NCBI chr 2:83,309,843...83,741,084
Ensembl chr 2:83,309,843...83,741,084
JBrowse link
G Sema5b semaphorin 5B acts_upstream_of_or_within ISO MGI:107556 (PMID:21835343) RGD PMID:21835343 NCBI chr11:65,102,532...65,225,456
Ensembl chr11:65,102,031...65,225,311
JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073
JBrowse link
detection of mechanical stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano3 anoctamin 3 IMP RGD PMID:23872594 RGD:9681745 NCBI chr 3:97,235,671...97,550,090
Ensembl chr 3:97,238,354...97,550,154
JBrowse link
G Jup junction plakoglobin involved_in ISO
IEA
(PMID:18937352)
GO_REF:0000107
RGD
Ensembl
PMID:18937352 GO_REF:0000107 NCBI chr10:85,300,438...85,327,378
Ensembl chr10:85,300,440...85,327,057
JBrowse link
G Piezo1 piezo-type mechanosensitive ion channel component 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:20813920)
GO_Central
RGD
PMID:20813920 GO_REF:0000033 NCBI chr19:50,544,580...50,606,812
Ensembl chr19:50,544,582...50,606,501
JBrowse link
G Piezo2 piezo-type mechanosensitive ion channel component 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:56,468,449...56,844,984
Ensembl chr18:56,469,680...56,844,216
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO MGI:1857562 (PMID:12514735), (PMID:15545994) RGD PMID:12514735 PMID:15545994 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128
JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498
JBrowse link
G Pkd1l2 polycystin 1 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:45,049,713...45,136,503
Ensembl chr19:45,049,719...45,135,532
JBrowse link
G Pkd1l3 polycystin 1 like 3, transient receptor potential channel interacting involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:37,585,564...37,650,083
Ensembl chr19:37,585,725...37,650,155
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:12514735)
GO_Central
RGD
PMID:12514735 GO_REF:0000033 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825
JBrowse link
G Pkd2l1 polycystin 2 like 1, transient receptor potential cation channel involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:243,032,891...243,070,031
Ensembl chr 1:243,032,913...243,070,031
JBrowse link
G Pkd2l2 polycystin 2 like 2, transient receptor potential cation channel involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:26,007,789...26,042,428
Ensembl chr18:26,007,797...26,042,428
JBrowse link
G Pkdrej polycystin family receptor for egg jelly involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:116,909,094...116,915,468
Ensembl chr 7:116,909,094...116,915,468
JBrowse link
detection of mechanical stimulus involved in equilibrioception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO MGI:1856394 (PMID:16481439) RGD PMID:16481439 NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:2447995 (PMID:15846349) RGD PMID:15846349 NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
detection of mechanical stimulus involved in sensory perception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asic2 acid sensing ion channel subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180111 (PMID:11069180)
Ensembl
RGD
PMID:11069180 GO_REF:0000107 NCBI chr10:65,870,592...66,940,577
Ensembl chr10:65,870,594...66,940,424
JBrowse link
G Asic3 acid sensing ion channel subunit 3 acts_upstream_of_or_within ISO MGI:2429689 (PMID:11754838) RGD PMID:11754838 NCBI chr 4:10,760,509...10,764,987
Ensembl chr 4:10,760,597...10,764,643
JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 IEP RGD PMID:12591163 RGD:11570504 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Igf1 insulin-like growth factor 1 IMP RGD PMID:21037532 RGD:8549460 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:6,632,324...6,642,534
Ensembl chr20:6,632,362...6,642,532
JBrowse link
G Piezo2 piezo-type mechanosensitive ion channel component 2 involved_in ISO (MGI:5574426|PMID:24717433) RGD PMID:24717433 MGI:5574426 NCBI chr18:56,468,449...56,844,984
Ensembl chr18:56,469,680...56,844,216
JBrowse link
G Scn10a sodium voltage-gated channel alpha subunit 10 involved_in ISO MGI:2180183 (PMID:25101983) RGD PMID:25101983 NCBI chr 8:119,350,723...119,462,882
Ensembl chr 8:119,350,724...119,462,614
JBrowse link
G Scn11a sodium voltage-gated channel alpha subunit 11 involved_in ISO MGI:3818305 (PMID:25101983) RGD PMID:25101983 NCBI chr 8:119,495,550...119,567,044
Ensembl chr 8:119,496,769...119,567,044
JBrowse link
G Scn9a sodium voltage-gated channel alpha subunit 9 involved_in IEA
ISO
GO_REF:0000107
MGI:3053097 (PMID:25101983)
Ensembl
RGD
PMID:25101983 GO_REF:0000107 NCBI chr 3:51,145,148...51,293,342
Ensembl chr 3:51,145,146...51,293,516
JBrowse link
G Serpine2 serpin family E member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2387774 (PMID:15509762)
Ensembl
RGD
PMID:15509762 GO_REF:0000107 NCBI chr 9:81,124,746...81,188,866
Ensembl chr 9:81,124,804...81,188,826
JBrowse link
G Trpa1 transient receptor potential cation channel, subfamily A, member 1 involved_in ISO (PMID:25101983) RGD PMID:25101983 NCBI chr 5:4,379,862...4,434,133
Ensembl chr 5:4,379,999...4,433,570
JBrowse link
detection of mechanical stimulus involved in sensory perception of pain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano1 anoctamin 1 NOT|involved_in ISO (MGI:5461590|PMID:22634729) RGD PMID:22634729 MGI:5461590 NCBI chr 1:199,751,439...199,900,099
Ensembl chr 1:199,751,439...199,900,069
JBrowse link
G Asic3 acid sensing ion channel subunit 3 acts_upstream_of_or_within ISO MGI:2429689|MGI:2451051 (PMID:11754838), (PMID:12060708) RGD PMID:11754838 PMID:12060708 NCBI chr 4:10,760,509...10,764,987
Ensembl chr 4:10,760,597...10,764,643
JBrowse link
G Bace1 beta-secretase 1 IMP RGD PMID:28012171 RGD:13782150 NCBI chr 8:46,142,060...46,166,268
Ensembl chr 8:46,142,116...46,165,876
JBrowse link
G Cacnb3 calcium voltage-gated channel auxiliary subunit beta 3 IMP RGD PMID:22187436 RGD:13514092 NCBI chr 7:129,784,799...129,797,074
Ensembl chr 7:129,783,674...129,797,074
JBrowse link
G Chrna5 cholinergic receptor nicotinic alpha 5 subunit IMP RGD PMID:15652389 RGD:150530460 NCBI chr 8:55,369,794...55,398,526
Ensembl chr 8:55,369,794...55,398,146
JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 IMP RGD PMID:27760212 RGD:12910551 NCBI chr 4:150,388,326...150,401,173
Ensembl chr 4:150,388,325...150,401,168
JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 IMP RGD PMID:27760212 PMID:28108674 RGD:12910551, RGD:13463594 NCBI chr13:40,077,976...40,081,883
Ensembl chr13:40,077,976...40,081,883
JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1930480 (PMID:16190898)
Ensembl
RGD
PMID:16190898 GO_REF:0000107 NCBI chr20:42,767,733...42,960,903
Ensembl chr20:42,766,369...42,959,911
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A NOT|acts_upstream_of_or_within ISO MGI:1928285 (PMID:16190898) RGD PMID:16190898 NCBI chr10:5,629,683...6,053,262
Ensembl chr10:5,631,369...6,044,637
JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B acts_upstream_of_or_within ISO (PMID:16190898) RGD PMID:16190898 NCBI chr 4:168,580,824...169,044,110
Ensembl chr 4:168,599,546...169,042,279
JBrowse link
G Grin2d glutamate ionotropic receptor NMDA type subunit 2D NOT|acts_upstream_of_or_within ISO MGI:1928298 (PMID:16190898) RGD PMID:16190898 NCBI chr 1:96,306,871...96,346,994
Ensembl chr 1:96,308,365...96,344,793
JBrowse link
G Grm8 glutamate metabotropic receptor 8 IDA RGD PMID:18533199 RGD:6771181 NCBI chr 4:55,805,762...56,731,690
Ensembl chr 4:55,805,955...56,730,831
JBrowse link
G Htr2a 5-hydroxytryptamine receptor 2A IMP RGD PMID:20531396 RGD:7257680 NCBI chr15:49,950,035...50,022,188
Ensembl chr15:49,950,804...50,020,928
JBrowse link
G Htr7 5-hydroxytryptamine receptor 7 IDA RGD PMID:21843960 RGD:6482179 NCBI chr 1:233,636,442...233,761,063
Ensembl chr 1:233,636,452...233,760,626
JBrowse link
G Il18 interleukin 18 IDA RGD PMID:19853379 RGD:2315887 NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
JBrowse link
G Itga2 integrin subunit alpha 2 IMP RGD PMID:18234883 RGD:2303705 NCBI chr 2:46,520,345...46,621,487
Ensembl chr 2:46,523,948...46,621,481
JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5494919|PMID:23473320)
UniProt
RGD
PMID:23473320 GO_REF:0000024 MGI:5494919 NCBI chr 4:159,464,223...159,472,905
Ensembl chr 4:159,464,188...159,472,682
JBrowse link
G Mir15b microRNA 15b IDA RGD PMID:28012171 RGD:13782150 NCBI chr 2:153,245,200...153,245,297
Ensembl chr 2:153,245,200...153,245,297
JBrowse link
G Mir338 microRNA 338 IMP RGD PMID:28108674 RGD:13463594 NCBI chr10:105,297,923...105,297,988 JBrowse link
G Ntrk1 neurotrophic receptor tyrosine kinase 1 IMP RGD PMID:20351485 RGD:5684352 NCBI chr 2:173,236,961...173,253,806
Ensembl chr 2:173,236,963...173,253,770
JBrowse link
G Pawr pro-apoptotic WT1 regulator IDA RGD PMID:21238854 RGD:9835398 NCBI chr 7:43,645,028...43,725,033
Ensembl chr 7:43,645,084...43,725,028
JBrowse link
G Phf24 PHD finger protein 24 acts_upstream_of_or_within ISO MGI:5706936 (PMID:25242222) RGD PMID:25242222 NCBI chr 5:57,143,428...57,171,054
Ensembl chr 5:57,142,632...57,168,497
JBrowse link
G Scn11a sodium voltage-gated channel alpha subunit 11 involved_in IEA
ISO
GO_REF:0000107
MGI:5608917 (PMID:31534133)
Ensembl
RGD
PMID:31534133 GO_REF:0000107 NCBI chr 8:119,495,550...119,567,044
Ensembl chr 8:119,496,769...119,567,044
JBrowse link
G Scn1a sodium voltage-gated channel alpha subunit 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5796061|PMID:27281198)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:27281198 GO_REF:0000024 GO_REF:0000107 MGI:5796061 NCBI chr 3:50,952,790...51,071,804
Ensembl chr 3:50,952,791...51,071,699
JBrowse link
G Tlr4 toll-like receptor 4 IMP RGD PMID:27760212 RGD:12910551 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Tmem120a transmembrane protein 120A involved_in ISS
ISO
GO_REF:0000024
(MGI:6414708|PMID:32084332)
UniProt
RGD
PMID:32084332 GO_REF:0000024 MGI:6414708 NCBI chr12:20,942,243...20,950,908
Ensembl chr12:20,942,439...20,990,316
JBrowse link
G Tnf tumor necrosis factor IMP RGD PMID:16675114 RGD:7387300 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Trpa1 transient receptor potential cation channel, subfamily A, member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3624810 (PMID:16630838)
Ensembl
RGD
PMID:16630838 GO_REF:0000107 NCBI chr 5:4,379,862...4,434,133
Ensembl chr 5:4,379,999...4,433,570
JBrowse link
detection of mechanical stimulus involved in sensory perception of sound term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 acts_upstream_of_or_within ISO MGI:3046273 (PMID:16775142) RGD PMID:16775142 NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:16529873) RGD PMID:16529873 NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Chrna10 cholinergic receptor nicotinic alpha 10 subunit acts_upstream_of_or_within ISO MGI:3774038 (PMID:18077337) RGD PMID:18077337 NCBI chr 1:156,487,279...156,494,277
Ensembl chr 1:156,487,279...156,491,476
JBrowse link
G Chrna9 cholinergic receptor nicotinic alpha 9 subunit involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158742 (PMID:18077337)
Ensembl
RGD
PMID:18077337 GO_REF:0000107 NCBI chr14:42,235,218...42,241,939
Ensembl chr14:42,235,226...42,242,192
JBrowse link
G Col11a1 collagen type XI alpha 1 chain involved_in ISO (PMID:10889003) RGD PMID:10889003 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
G Hpn hepsin involved_in ISS
ISO
GO_REF:0000024
(MGI:3719967|PMID:17620368), (MGI:5306554|PMID:20683358), (MGI:5308539|PMID:17918732)
UniProt
RGD
PMID:17620368 PMID:17918732 PMID:20683358 GO_REF:0000024 MGI:3719967 MGI:5306554 MGI:5308539 NCBI chr 1:86,337,085...86,352,785
Ensembl chr 1:86,337,087...86,352,811
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA
ISO
GO_REF:0000107
MGI:1931858 (PMID:15891643)
Ensembl
RGD
PMID:15891643 GO_REF:0000107 NCBI chr 1:198,291,711...198,624,683
Ensembl chr 1:198,291,766...198,624,669
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in ISO (MGI:3530388|PMID:15731517) RGD PMID:15731517 MGI:3530388 NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within ISO MGI:3718054 (PMID:23217710) RGD PMID:23217710 NCBI chr20:6,632,324...6,642,534
Ensembl chr20:6,632,362...6,642,532
JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO MGI:3608879 (PMID:16170314) RGD PMID:16170314 NCBI chr 3:124,201,877...124,221,142
Ensembl chr 3:124,201,877...124,220,162
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO MGI:2178233|MGI:2386570 (PMID:17523175) RGD PMID:17523175 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO MGI:1856394 (PMID:16481439) RGD PMID:16481439 NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
JBrowse link
G Pdzd7 PDZ domain containing 7 acts_upstream_of_or_within ISO MGI:4433578 (PMID:24334608) RGD PMID:24334608 NCBI chr 1:243,888,295...243,907,778
Ensembl chr 1:243,888,281...243,906,839
JBrowse link
G Pjvk pejvakin acts_upstream_of_or_within ISO MGI:3686985|MGI:5925280 (PMID:28089576) RGD PMID:28089576 NCBI chr 3:61,594,644...61,605,051
Ensembl chr 3:61,596,641...61,605,045
JBrowse link
G Ptprq protein tyrosine phosphatase, receptor type, Q involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2679316 (PMID:22357859)
Ensembl
RGD
PMID:22357859 GO_REF:0000107 NCBI chr 7:42,834,455...43,016,807
Ensembl chr 7:42,837,109...43,016,917
JBrowse link
G Rest RE1-silencing transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:6193260|PMID:29961578)
UniProt
RGD
PMID:29961578 GO_REF:0000024 MGI:6193260 NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
JBrowse link
G Slc12a2 solute carrier family 12 member 2 acts_upstream_of_or_within ISO MGI:1935144 (PMID:16529873) RGD PMID:16529873 NCBI chr18:51,348,282...51,416,448
Ensembl chr18:51,348,302...51,416,440
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:2447995 (PMID:15846349) RGD PMID:15846349 NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
G Strc stereocilin acts_upstream_of_or_within ISO MGI:3818633 (PMID:18849963) RGD PMID:18849963 NCBI chr 3:108,335,920...108,355,114
Ensembl chr 3:108,335,747...108,354,134
JBrowse link
G Tmc1 transmembrane channel-like 1 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:11850618)
MGI:2151017|MGI:5427097 (PMID:22105175), (PMID:23871232)
GO_REF:0000033
RGD
GO_Central
PMID:11850618 PMID:22105175 PMID:23871232 GO_REF:0000033 NCBI chr 1:218,275,249...218,446,013
Ensembl chr 1:218,276,417...218,445,955
JBrowse link
G Tmc2 transmembrane channel-like 2 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:11850618)
MGI:2151016 (PMID:22105175)
GO_REF:0000033
RGD
GO_Central
PMID:11850618 PMID:22105175 GO_REF:0000033 NCBI chr 3:117,396,378...117,464,336
Ensembl chr 3:117,396,378...117,464,336
JBrowse link
G Whrn whirlin involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:4454934|PMID:20502675)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:20502675 GO_REF:0000024 GO_REF:0000107 MGI:4454934 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
detection of mechanical stimulus involved in sensory perception of touch term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcna1 potassium voltage-gated channel subfamily A member 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5494919|PMID:23473320)
UniProt
RGD
PMID:23473320 GO_REF:0000024 MGI:5494919 NCBI chr 4:159,464,223...159,472,905
Ensembl chr 4:159,464,188...159,472,682
JBrowse link
G Kcnk4 potassium two pore domain channel subfamily K member 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:3846268|PMID:19279663)
UniProt
RGD
PMID:19279663 GO_REF:0000024 MGI:3846268 NCBI chr 1:204,117,941...204,129,494
Ensembl chr 1:204,114,572...204,125,925
JBrowse link
detection of muscle stretch term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav3 caveolin 3 involved_in ISO (MGI:5613732|PMID:25257915) RGD PMID:25257915 MGI:5613732 NCBI chr 4:145,582,168...145,598,142
Ensembl chr 4:145,582,060...145,598,137
JBrowse link
G Csrp3 cysteine and glycine rich protein 3 involved_in ISO
IEA
(PMID:12507422)
GO_REF:0000107
(MGI:2447926|PMID:12507422)
RGD
Ensembl
PMID:12507422 GO_REF:0000107 MGI:2447926 NCBI chr 1:98,528,067...98,546,647
Ensembl chr 1:98,528,068...98,546,653
JBrowse link
G Tcap titin-cap involved_in ISO (PMID:12507422) RGD PMID:12507422 NCBI chr10:83,381,719...83,382,887
Ensembl chr10:83,381,719...83,382,887
JBrowse link
G Ttn titin acts_upstream_of_or_within ISO (PMID:18765796) RGD PMID:18765796 NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741
JBrowse link
detection of temperature stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano3 anoctamin 3 IMP RGD PMID:23872594 RGD:9681745 NCBI chr 3:97,235,671...97,550,090
Ensembl chr 3:97,238,354...97,550,154
JBrowse link
G Drgx dorsal root ganglia homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2182636 (PMID:11498051)
Ensembl
RGD
PMID:11498051 GO_REF:0000107 NCBI chr16:7,854,849...7,884,404
Ensembl chr16:7,854,849...7,900,600
JBrowse link
G Ngfr nerve growth factor receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857226 (PMID:1317267)
Ensembl
RGD
PMID:1317267 GO_REF:0000107 NCBI chr10:80,515,287...80,533,518
Ensembl chr10:80,515,299...80,533,518
JBrowse link
detection of temperature stimulus involved in sensory perception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asic3 acid sensing ion channel subunit 3 acts_upstream_of_or_within ISO MGI:2429689 (PMID:11754838) RGD PMID:11754838 NCBI chr 4:10,760,509...10,764,987
Ensembl chr 4:10,760,597...10,764,643
JBrowse link
detection of temperature stimulus involved in sensory perception of pain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora1 adenosine A1 receptor IMP RGD PMID:20065990 RGD:5129094 NCBI chr13:45,658,872...45,695,821
Ensembl chr13:45,658,872...45,695,801
JBrowse link
G Ano1 anoctamin 1 involved_in ISO UniProtKB:Q704Y3 (MGI:5461590|PMID:22634729) RGD PMID:22634729 MGI:5461590 NCBI chr 1:199,751,439...199,900,099
Ensembl chr 1:199,751,439...199,900,069
JBrowse link
G Arrb2 arrestin, beta 2 IMP RGD PMID:21926413 RGD:5509871 NCBI chr10:55,146,887...55,154,854
Ensembl chr10:55,146,818...55,154,850
JBrowse link
G Asic3 acid sensing ion channel subunit 3 acts_upstream_of_or_within ISO MGI:2451051 (PMID:12060708) RGD PMID:12060708 NCBI chr 4:10,760,509...10,764,987
Ensembl chr 4:10,760,597...10,764,643
JBrowse link
G Calca calcitonin-related polypeptide alpha acts_upstream_of_or_within ISO (PMID:16118273) RGD PMID:16118273 NCBI chr 1:168,878,212...168,883,176
Ensembl chr 1:168,878,214...168,883,105
JBrowse link
G Comt catechol-O-methyltransferase acts_upstream_of_or_within ISO MGI:2178542 (PMID:20561508) RGD PMID:20561508 NCBI chr11:82,568,052...82,587,642
Ensembl chr11:82,568,025...82,587,642
JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 IMP RGD PMID:27760212 RGD:12910551 NCBI chr 4:150,388,326...150,401,173
Ensembl chr 4:150,388,325...150,401,168
JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 IMP RGD PMID:27760212 RGD:12910551 NCBI chr13:40,077,976...40,081,883
Ensembl chr13:40,077,976...40,081,883
JBrowse link
G Disc1 DISC1 scaffold protein acts_upstream_of_or_within ISO MGI:3707421 (PMID:20561508) RGD PMID:20561508 NCBI chr19:53,014,201...53,223,617
Ensembl chr19:53,014,616...53,219,778
JBrowse link
G Ephb1 Eph receptor B1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5294537|PMID:19025592)
UniProt
RGD
PMID:19025592 GO_REF:0000024 MGI:5294537 NCBI chr 8:102,507,549...102,944,839
Ensembl chr 8:102,507,549...102,944,839
JBrowse link
G Htr2a 5-hydroxytryptamine receptor 2A IMP RGD PMID:20531396 RGD:7257680 NCBI chr15:49,950,035...50,022,188
Ensembl chr15:49,950,804...50,020,928
JBrowse link
G Lxn latexin acts_upstream_of_or_within ISO MGI:3622076 (PMID:16469302) RGD PMID:16469302 NCBI chr 2:151,727,556...151,733,426
Ensembl chr 2:151,727,102...151,733,460
JBrowse link
G Mmp24 matrix metallopeptidase 24 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:4361769|PMID:19805319)
Ensembl
UniProt
RGD
PMID:19805319 GO_REF:0000024 GO_REF:0000107 MGI:4361769 NCBI chr 3:144,279,096...144,323,572
Ensembl chr 3:144,279,096...144,323,572
JBrowse link
G Nr2f6 nuclear receptor subfamily 2, group F, member 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3574037 (PMID:15741322)
Ensembl
RGD
PMID:15741322 GO_REF:0000107 NCBI chr16:18,046,012...18,053,914
Ensembl chr16:18,046,013...18,053,459
JBrowse link
G Nrg1 neuregulin 1 acts_upstream_of_or_within ISO MGI:2448078 (PMID:20561508) RGD PMID:20561508 NCBI chr16:59,250,658...60,304,519
Ensembl chr16:59,250,854...60,296,884
JBrowse link
G Ntrk1 neurotrophic receptor tyrosine kinase 1 IMP RGD PMID:20351485 RGD:5684352 NCBI chr 2:173,236,961...173,253,806
Ensembl chr 2:173,236,963...173,253,770
JBrowse link
G Ntsr1 neurotensin receptor 1 IMP RGD PMID:15733655 RGD:9743979 NCBI chr 3:167,606,215...167,656,371
Ensembl chr 3:167,606,215...167,656,377
JBrowse link
G Pawr pro-apoptotic WT1 regulator IDA RGD PMID:17179954 RGD:9835416 NCBI chr 7:43,645,028...43,725,033
Ensembl chr 7:43,645,084...43,725,028
JBrowse link
G Prdm12 PR/SET domain 12 acts_upstream_of_or_within ISO (PMID:26005867) RGD PMID:26005867 NCBI chr 3:14,928,651...14,943,341
Ensembl chr 3:14,928,628...14,943,331
JBrowse link
G Scn10a sodium voltage-gated channel alpha subunit 10 involved_in ISO MGI:2180183|MGI:4430300 (PMID:19931571), (PMID:25101983) RGD PMID:19931571 PMID:25101983 NCBI chr 8:119,350,723...119,462,882
Ensembl chr 8:119,350,724...119,462,614
JBrowse link
G Scn11a sodium voltage-gated channel alpha subunit 11 involved_in IEA
ISO
GO_REF:0000107
MGI:3818305|MGI:5608917 (PMID:25101983), (PMID:25959819), (PMID:31534133)
Ensembl
RGD
PMID:25101983 PMID:25959819 PMID:31534133 GO_REF:0000107 NCBI chr 8:119,495,550...119,567,044
Ensembl chr 8:119,496,769...119,567,044
JBrowse link
G Scn9a sodium voltage-gated channel alpha subunit 9 involved_in IEA
ISO
GO_REF:0000107
MGI:3053097 (PMID:25101983)
Ensembl
RGD
PMID:25101983 GO_REF:0000107 NCBI chr 3:51,145,148...51,293,342
Ensembl chr 3:51,145,146...51,293,516
JBrowse link
G Tac1 tachykinin, precursor 1 involved_in ISO (PMID:17655832) RGD PMID:17655832 NCBI chr 4:35,679,183...35,687,180
Ensembl chr 4:35,679,704...35,687,178
JBrowse link
G Tac4 tachykinin precursor 4 involved_in IDA
ISO
PMID:17655832
(PMID:17655832)
RGD PMID:17655832 PMID:17655832 RGD:14695074 NCBI chr10:80,207,824...80,216,156
Ensembl chr10:80,207,610...80,216,156
JBrowse link
G Tlr4 toll-like receptor 4 IMP RGD PMID:27760212 RGD:12910551 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Trpv1 transient receptor potential cation channel, subfamily V, member 1 involved_in ISO UniProtKB:Q8BHY3 (MGI:5461590|PMID:22634729) RGD PMID:22634729 MGI:5461590 NCBI chr10:57,851,428...57,876,513
Ensembl chr10:57,851,428...57,876,513
JBrowse link
detection of temperature stimulus involved in thermoception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn4 opsin 4 acts_upstream_of_or_within ISO MGI:97914 (PMID:31924821) RGD PMID:31924821 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Rho rhodopsin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1353425 (PMID:31924821)
Ensembl
RGD
PMID:31924821 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Trpv1 transient receptor potential cation channel, subfamily V, member 1 acts_upstream_of_or_within ISO (PMID:18455988) RGD PMID:18455988 NCBI chr10:57,851,428...57,876,513
Ensembl chr10:57,851,428...57,876,513
JBrowse link
detection of UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fech ferrochelatase acts_upstream_of_or_within ISO MGI:2384729 (PMID:12149233) RGD PMID:12149233 NCBI chr18:57,945,123...57,978,327
Ensembl chr18:57,945,122...57,979,348
JBrowse link
detection of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr88 G-protein coupled receptor 88 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:204,191,443...204,199,576
Ensembl chr 2:204,191,427...204,199,733
JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (PMID:23172916) RGD PMID:23172916 NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403
JBrowse link
G Opn1mw opsin 1, medium wave sensitive involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:151,905,056...151,925,419
Ensembl chr  X:151,905,096...151,925,388
JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
JBrowse link
G Opn3 opsin 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:87,589,333...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
G Opn5 opsin 5 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Rgr retinal G protein coupled receptor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:12,801,594...12,816,402
Ensembl chr16:12,801,594...12,816,223
JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:218,362,195...218,374,387
Ensembl chr 2:218,362,200...218,374,599
JBrowse link
negative regulation of detection of mechanical stimulus involved in sensory perception of touch term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacnb3 calcium voltage-gated channel auxiliary subunit beta 3 IMP RGD PMID:22187436 RGD:13514092 NCBI chr 7:129,784,799...129,797,074
Ensembl chr 7:129,783,674...129,797,074
JBrowse link
phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb1 arrestin, beta 1 acts_upstream_of_or_within ISO MGI:2388373 (PMID:11853756) RGD PMID:11853756 NCBI chr 1:153,837,964...153,912,111
Ensembl chr 1:153,838,078...153,904,061
JBrowse link
G Asic2 acid sensing ion channel subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3043849 (PMID:14762118)
Ensembl
RGD
PMID:14762118 GO_REF:0000107 NCBI chr10:65,870,592...66,940,577
Ensembl chr10:65,870,594...66,940,424
JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO MGI:3056615 (PMID:16249514) RGD PMID:16249514 NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within ISO MGI:3527896 (PMID:15634774) RGD PMID:15634774 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779 (PMID:11095744), (PMID:11853756), (PMID:15073279), (PMID:16249514), (PMID:17881533), (PMID:18367617) RGD PMID:11095744 PMID:11853756 PMID:15073279 PMID:16249514 PMID:17881533 More... NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845|MGI:5051274 (PMID:17408617), (PMID:18171936), (PMID:29518352) RGD PMID:17408617 PMID:18171936 PMID:29518352 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO MGI:3783323 (PMID:18367617) RGD PMID:18367617 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252
JBrowse link
G Gpr52 G protein-coupled receptor 52 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr13:72,800,265...72,804,989
Ensembl chr13:72,800,127...72,806,180
JBrowse link
G Gpr88 G-protein coupled receptor 88 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:204,191,443...204,199,576
Ensembl chr 2:204,191,427...204,199,733
JBrowse link
G Guca1a guanylate cyclase activator 1A acts_upstream_of_or_within ISO MGI:2664159 (PMID:11493703), (PMID:15173221) RGD PMID:11493703 PMID:15173221 NCBI chr 9:13,588,988...13,598,566
Ensembl chr 9:13,588,525...13,598,565
JBrowse link
G Guca1b guanylate cyclase activator 1B acts_upstream_of_or_within ISO MGI:2664160 (PMID:11493703), (PMID:15173221) RGD PMID:11493703 PMID:15173221 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455
JBrowse link
G Opn1mw opsin 1, medium wave sensitive involved_in IEA
IBA
GO_REF:0000043
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000043 NCBI chr  X:151,905,056...151,925,419
Ensembl chr  X:151,905,096...151,925,388
JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IEA
IBA
GO_REF:0000043
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000043 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
JBrowse link
G Opn3 opsin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:87,589,333...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
G Opn4 opsin 4 involved_in IDA
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000043
(MGI:2667269|PMID:12808468)
(PMID:15674244)
GO_Central
UniProt
RGD
PMID:12808468 PMID:15674244 PMID:11834834 GO_REF:0000033 GO_REF:0000043 MGI:2667269, RGD:633348 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Opn5 opsin 5 involved_in ISO
IBA
(MGI:6359287|PMID:30936473)
GO_REF:0000033
RGD
GO_Central
PMID:30936473 GO_REF:0000033 MGI:6359287 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Plcb4 phospholipase C, beta 4 NAS RGD PMID:7688223 RGD:633574 NCBI chr 3:122,952,965...123,322,522
Ensembl chr 3:122,953,196...123,322,392
JBrowse link
G Rcvrn recoverin acts_upstream_of_or_within ISO MGI:3584102 (PMID:15173221) RGD PMID:15173221 NCBI chr10:52,388,706...52,396,454
Ensembl chr10:52,388,706...52,396,453
JBrowse link
G Rgr retinal G protein coupled receptor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:12,801,594...12,816,402
Ensembl chr16:12,801,594...12,816,223
JBrowse link
G Rho rhodopsin involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2181812 (PMID:16723493)
GO_Central
RGD
PMID:16723493 GO_REF:0000033 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:218,362,195...218,374,387
Ensembl chr 2:218,362,200...218,374,599
JBrowse link
G Slc24a4 solute carrier family 24 member 4 acts_upstream_of ISO (MGI:6116933|PMID:28650316) RGD PMID:28650316 MGI:6116933 NCBI chr 6:121,279,590...121,419,811
Ensembl chr 6:121,280,031...121,414,949
JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 involved_in ISO (PMID:22043319)
(MGI:6230806|PMID:22043319)
RGD PMID:22043319 MGI:6230806 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO MGI:3054784 (PMID:15365173) RGD PMID:15365173 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922
JBrowse link
G Chrm1 cholinergic receptor, muscarinic 1 involved_in ISO (PMID:12196552) RGD PMID:12196552 NCBI chr 1:205,567,226...205,583,001
Ensembl chr 1:205,567,220...205,582,356
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 involved_in ISO
IBA
(PMID:17584859)
GO_REF:0000033
RGD
GO_Central
PMID:17584859 GO_REF:0000033 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO MGI:2657247 (PMID:16723493) RGD PMID:16723493 NCBI chr 1:235,909,583...235,965,435
Ensembl chr 1:235,909,775...235,965,315
JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
regulation of opsin-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO MGI:3054784|MGI:3054793 (PMID:15365173), (PMID:15365178) RGD PMID:15365173 PMID:15365178 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:15946941)
UniProt
Ensembl
RGD
PMID:15946941 GO_REF:0000024 GO_REF:0000107 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 IMP RGD PMID:11931744 RGD:1599009 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 TAS RGD PMID:9147475 RGD:729748 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
JBrowse link
G Pcp2 Purkinje cell protein 2 acts_upstream_of_or_within ISO MGI:3579782 (PMID:18768681) RGD PMID:18768681 NCBI chr12:1,681,659...1,683,899
Ensembl chr12:1,681,659...1,683,899
JBrowse link
G Rho rhodopsin IDA RGD PMID:8814134 RGD:6893595 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    response to stimulus 10871
      detection of stimulus 1609
        detection of abiotic stimulus 144
          detection of electrical stimulus + 0
          detection of gravity + 2
          detection of humidity + 0
          detection of light stimulus + 51
          detection of mechanical stimulus + 73
          detection of osmotic stimulus 0
          detection of temperature stimulus + 33
paths to the root