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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA modification
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Accession:GO:0009451 term browser browse the term
Definition:The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Comment:The term 'RNA editing' (GO:0016547) was merged into 'RNA modification' (GO:0009451) on the basis of statements in the preface of Modification and Editing of RNA (ISBN:1555811337) that there is no clear distinction between modification and editing.
Synonyms:narrow_synonym: RNA editing
 alt_id: GO:0016547
 xref: Wikipedia:RNA_editing


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7-methylguanosine cap hypermethylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgs1 trimethylguanosine synthase 1 ISO
IBA
(PMID:16687569)
PMID:21873635
RGD PMID:16687569, PMID:21873635 RGD:13792537 NCBI chr 5:16,413,356...16,446,881
Ensembl chr 5:16,413,356...16,446,881
JBrowse link
adenosine to inosine editing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adad1 adenosine deaminase domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:123,790,798...123,848,598
Ensembl chr 2:123,790,915...123,848,179
JBrowse link
G Adad2 adenosine deaminase domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:52,258,908...52,263,031
Ensembl chr19:52,258,947...52,262,959
JBrowse link
G Adar adenosine deaminase, RNA-specific IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
MGI:MGI:3029789 (MGI:MGI:3027456|PMID:14615479), (MGI:MGI:5447614|PMID:17369310)
(PMID:15858013), (PMID:16475990), (PMID:19651874), (PMID:21289159)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:14615479, PMID:15858013, PMID:16475990, PMID:17369310, PMID:19651874, PMID:21289159, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3027456, MGI:MGI:5447614, RGD:13792537 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 IDA
ISO
IBA
ISS
IEA
(PMID:18178553), (PMID:21289159), (PMID:32220291)
PMID:21873635
MGI:MGI:4840554 (MGI:MGI:4831065|PMID:20826656), (MGI:MGI:5447614|PMID:17369310)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:17369310, PMID:18178553, PMID:20826656, PMID:21289159, PMID:32220291, PMID:8559253, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4831065, MGI:MGI:5447614, RGD:631737, RGD:13792537 NCBI chr20:11,972,352...12,101,022
Ensembl chr20:11,972,381...12,101,047
JBrowse link
G Adarb2 adenosine deaminase, RNA-specific, B2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:58,098,979...58,653,137
Ensembl chr17:58,104,559...58,301,260
JBrowse link
G Mettl3 methyltransferase-like 3 ISO (MGI:MGI:5621227|PMID:25569111) RGD PMID:25569111 MGI:MGI:5621227 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
G Nudt16 nudix hydrolase 16 ISO (PMID:20385596) RGD PMID:20385596 NCBI chr 8:113,673,069...113,675,124
Ensembl chr 8:113,672,758...113,675,128
JBrowse link
base conversion or substitution editing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific ISO (PMID:9020165) RGD PMID:9020165 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 IDA
ISO
(PMID:32220291) RGD PMID:32220291, PMID:10836790 RGD:10450892 NCBI chr20:11,972,352...12,101,022
Ensembl chr20:11,972,381...12,101,047
JBrowse link
cap1 mRNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmtr1 cap methyltransferase 1 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:21310715)
Ensembl
UniProt
RGD
PMID:21310715, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr20:8,324,968...8,385,174
Ensembl chr20:8,312,792...8,368,764
JBrowse link
G Cmtr2 cap methyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:41,426,536...41,433,367
Ensembl chr19:41,427,504...41,433,346
JBrowse link
cap2 mRNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmtr2 cap methyltransferase 2 ISO
IBA
(PMID:21310715)
PMID:21873635
RGD PMID:21310715, PMID:21873635 RGD:13792537 NCBI chr19:41,426,536...41,433,367
Ensembl chr19:41,427,504...41,433,346
JBrowse link
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtfmt mitochondrial methionyl-tRNA formyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:70,952,209...70,986,393
Ensembl chr 8:70,952,203...70,986,408
JBrowse link
cytidine to uridine editing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor TAS
IEA
ISO
IMP
PMID:12896982
GO_REF:0000107
MGI:MGI:103298 (MGI:MGI:5613094|PMID:24916387)
Ensembl
RGD
PMID:24916387, PMID:12896982, PMID:10669759 GO_REF:0000107, MGI:MGI:5613094, RGD:8553404, RGD:9587747 NCBI chr 1:250,426,027...250,514,245
Ensembl chr 1:250,426,158...250,514,866
JBrowse link
G Aicda activation-induced cytidine deaminase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IDA
IBA
ISO
PMID:21873635
MGI:MGI:1917115|MGI:MGI:2157378|MGI:MGI:2384294 (MGI:MGI:2157316|PMID:8692961), (MGI:MGI:5613094|PMID:24916387)
RGD PMID:8692961, PMID:24916387, PMID:12020819, PMID:21873635 MGI:MGI:2157316, MGI:MGI:5613094, RGD:625559, RGD:13792537 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 ISO
IBA
(MGI:MGI:1340097|PMID:10403781)
PMID:21873635
(PMID:10403781)
RGD PMID:10403781, PMID:21873635 MGI:MGI:1340097, RGD:13792537 NCBI chr 9:14,529,218...14,542,731
Ensembl chr 9:14,529,218...14,542,731
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:121,108,108...121,128,346
Ensembl chr 7:121,109,241...121,128,542
JBrowse link
G Rbm47 RNA binding motif protein 47 ISO MGI:MGI:103298 (MGI:MGI:5613094|PMID:24916387) RGD PMID:24916387 MGI:MGI:5613094 NCBI chr14:43,701,944...43,839,803
Ensembl chr14:43,810,119...43,837,662
JBrowse link
enzyme-directed rRNA 2'-O-methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:94,439,059...94,445,503
Ensembl chr10:94,439,077...94,445,503
JBrowse link
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 ISS
ISO
GO_REF:0000024
(PMID:25219674)
UniProt
RGD
PMID:25219674 GO_REF:0000024 NCBI chr  X:155,844,914...155,862,363
Ensembl chr  X:155,844,857...155,862,475
JBrowse link
G LOC100911166 RNA pseudouridylate synthase domain-containing protein 2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:112,519,789...112,524,281
Ensembl chr 3:112,519,808...112,525,575
JBrowse link
G Rpusd1 RNA pseudouridine synthase domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:15,099,104...15,102,968
Ensembl chr10:15,099,009...15,102,960
JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:110,835,654...110,840,903
Ensembl chr 3:110,835,683...110,840,068
JBrowse link
G Rpusd3 RNA pseudouridine synthase D3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:145,361,937...145,370,992
Ensembl chr 4:145,366,765...145,370,992
JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:36,467,706...36,477,190
Ensembl chr 8:36,467,706...36,477,189
JBrowse link
G Tsr3 TSR3 ribosome maturation factor ISO (PMID:27084949) RGD PMID:27084949 NCBI chr10:14,598,014...14,600,576
Ensembl chr10:14,598,014...14,600,576
JBrowse link
miRNA 2'-O-methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcdin3d BCDIN3 domain containing RNA methyltransferase ISS
ISO
GO_REF:0000024
(PMID:28119416)
UniProt
RGD
PMID:28119416 GO_REF:0000024 NCBI chr 7:141,132,106...141,136,700
Ensembl chr 7:141,132,133...141,136,700
JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 IEA
ISO
ISS
GO_REF:0000107
(PMID:25925575), (PMID:28888424)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:25925575, PMID:28888424 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:21,696,796...21,699,241
Ensembl chr  X:21,696,772...21,699,241
JBrowse link
G Trmt5 tRNA methyltransferase 5 ISO
IBA
(PMID:26189817)
PMID:21873635
RGD PMID:26189817, PMID:21873635 RGD:13792537 NCBI chr 6:96,164,579...96,171,680
Ensembl chr 6:96,153,014...96,171,779
JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 ISO MGI:MGI:5750452 (MGI:MGI:5635958|PMID:25738458) RGD PMID:25738458 MGI:MGI:5635958 NCBI chr 3:149,835,953...149,870,429
Ensembl chr 3:149,703,848...149,870,413
JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 ISO
IBA
SGD:S000003205 (MGI:MGI:2677576|PMID:14522080)
PMID:21873635
RGD PMID:14522080, PMID:21873635 MGI:MGI:2677576, RGD:13792537 NCBI chr 8:85,807,703...85,832,263
Ensembl chr 8:85,808,125...85,831,937
JBrowse link
mRNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbll1 Cbl proto-oncogene like 1 ISO (PMID:29507755) RGD PMID:29507755 NCBI chr 6:50,772,718...50,786,861
Ensembl chr 6:50,772,829...50,786,967
JBrowse link
G Cmtr1 cap methyltransferase 1 ISO
ISS
(PMID:20713356)
GO_REF:0000024
RGD
UniProt
PMID:20713356 GO_REF:0000024 NCBI chr20:8,324,968...8,385,174
Ensembl chr20:8,312,792...8,368,764
JBrowse link
G LOC103692719 tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 6:136,244,466...136,250,496
Ensembl chr 6:136,150,785...136,250,752
JBrowse link
G Mettl14 methyltransferase like 14 ISO
IBA
(PMID:24316715), (PMID:25719671), (PMID:27281194), (PMID:27373337), (PMID:27627798)
PMID:21873635
(MGI:MGI:5559905|PMID:24394384), (MGI:MGI:5927282|PMID:28965759)
RGD PMID:24316715, PMID:24394384, PMID:25719671, PMID:27281194, PMID:27373337, PMID:27627798, PMID:28965759, PMID:21873635 MGI:MGI:5559905, MGI:MGI:5927282, RGD:13792537 NCBI chr 2:227,566,811...227,583,047
Ensembl chr 2:227,566,815...227,582,895
JBrowse link
G Mettl16 methyltransferase like 16 ISO (PMID:30197297), (PMID:30197299)
(MGI:MGI:6199095|PMID:30197299)
RGD PMID:30197297, PMID:30197299 MGI:MGI:6199095 NCBI chr10:61,626,595...61,682,947
Ensembl chr10:61,626,597...61,672,136
JBrowse link
G Mettl3 methyltransferase-like 3 ISO (PMID:22575960), (PMID:24284625), (PMID:24316715), (PMID:25719671), (PMID:27281194), (PMID:27373337), (PMID:27627798), (PMID:28297716)
(MGI:MGI:5527005|PMID:24209618), (MGI:MGI:5621227|PMID:25569111), (MGI:MGI:5621254|PMID:25456834), (MGI:MGI:5927282|PMID:28965759), (MGI:MGI:6094929|PMID:28792938)
RGD PMID:22575960, PMID:24209618, PMID:24284625, PMID:24316715, PMID:25456834, PMID:25569111, PMID:25719671, PMID:27281194, PMID:27373337, PMID:27627798, PMID:28297716, PMID:28792938, PMID:28965759 MGI:MGI:5527005, MGI:MGI:5621227, MGI:MGI:5621254, MGI:MGI:5927282, MGI:MGI:6094929 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
G Mettl8 methyltransferase like 8 ISO MGI:MGI:5903742 (MGI:MGI:5903638|PMID:28655767)
(PMID:28655767)
RGD PMID:28655767 MGI:MGI:5903638 NCBI chr 3:57,257,394...57,642,096 JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 ISO (PMID:22395603), (PMID:28418038), (PMID:31358969)
(MGI:MGI:6368099|PMID:23871666)
RGD PMID:22395603, PMID:23871666, PMID:28418038, PMID:31358969 MGI:MGI:6368099 NCBI chr 1:36,295,650...36,319,906
Ensembl chr 1:36,295,650...36,319,966
JBrowse link
G Pcif1 phosphorylated CTD interacting factor 1 ISO (MGI:MGI:6368443|PMID:30487554)
(PMID:30467178), (PMID:30487554), (PMID:31279658), (PMID:31279659), (PMID:32814042)
RGD PMID:30467178, PMID:30487554, PMID:31279658, PMID:31279659, PMID:32814042 MGI:MGI:6368443 NCBI chr 3:161,343,883...161,356,815
Ensembl chr 3:161,343,883...161,356,815
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit ISO
ISS
(PMID:29072297)
GO_REF:0000024
RGD
UniProt
PMID:29072297 GO_REF:0000024 NCBI chr11:47,047,342...47,052,420
Ensembl chr11:47,047,342...47,052,418
JBrowse link
G Trmt6 tRNA methyltransferase 6 ISO (PMID:29072297), (PMID:29107537) RGD PMID:29072297, PMID:29107537 NCBI chr 3:125,458,692...125,470,413
Ensembl chr 3:125,458,692...125,470,413
JBrowse link
G Trmt61a tRNA methyltransferase 61A ISS
ISO
GO_REF:0000024
(PMID:29072297), (PMID:29107537)
UniProt
RGD
PMID:29072297, PMID:29107537 GO_REF:0000024 NCBI chr 6:136,150,768...136,156,785
Ensembl chr 6:136,150,785...136,250,752
JBrowse link
G Virma vir like m6A methyltransferase associated ISO (PMID:24981863), (PMID:29507755) RGD PMID:24981863, PMID:29507755 NCBI chr 5:25,042,743...25,121,403
Ensembl chr 5:25,042,710...25,120,264
JBrowse link
G Wtap WT1 associated protein ISO
IBA
(PMID:24316715), (PMID:24407421), (PMID:24981863)
PMID:21873635
RGD PMID:24316715, PMID:24407421, PMID:24981863, PMID:21873635 RGD:13792537 NCBI chr 1:47,942,500...47,967,633
Ensembl chr 1:47,942,500...47,967,631
JBrowse link
G Zc3h13 zinc finger CCCH type containing 13 ISO (PMID:29507755)
(MGI:MGI:6158697|PMID:29547716)
RGD PMID:29507755, PMID:29547716 MGI:MGI:6158697 NCBI chr15:57,340,522...57,405,287
Ensembl chr15:57,340,579...57,405,287
JBrowse link
mRNA modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor ISO
IEA
MGI:MGI:104663 (MGI:MGI:4943819|PMID:20541607)
GO_REF:0000107
RGD
Ensembl
PMID:20541607 GO_REF:0000107, MGI:MGI:4943819 NCBI chr 1:250,426,027...250,514,245
Ensembl chr 1:250,426,158...250,514,866
JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 IDA RGD PMID:14660658 RGD:1358272 NCBI chr20:11,972,352...12,101,022
Ensembl chr20:11,972,381...12,101,047
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IDA
ISO
MGI:MGI:2157186|MGI:MGI:2157378|MGI:MGI:3664540 (MGI:MGI:1340097|PMID:10403781), (MGI:MGI:2157316|PMID:8692961), (MGI:MGI:80219|PMID:8626621), (MGI:MGI:894899|PMID:9240444) RGD PMID:8626621, PMID:8692961, PMID:9240444, PMID:10403781, PMID:8511591 MGI:MGI:1340097, MGI:MGI:2157316, MGI:MGI:80219, MGI:MGI:894899, RGD:634661 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 ISO MGI:MGI:2157186 (MGI:MGI:80219|PMID:8626621) RGD PMID:8626621 MGI:MGI:80219 NCBI chr 9:14,529,218...14,542,731
Ensembl chr 9:14,529,218...14,542,731
JBrowse link
G Dnajb11 DnaJ heat shock protein family (Hsp40) member B11 ISO (MGI:MGI:2154591|PMID:11584023) RGD PMID:11584023 MGI:MGI:2154591 NCBI chr11:81,741,342...81,757,806
Ensembl chr11:81,741,297...81,757,813
JBrowse link
mRNA pseudouridine synthesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:155,844,914...155,862,363
Ensembl chr  X:155,844,857...155,862,475
JBrowse link
G Pus1 pseudouridine synthase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:51,936,721...51,945,930
Ensembl chr12:51,937,175...51,945,928
JBrowse link
G Pus3 pseudouridine synthase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:36,760,874...36,769,167
Ensembl chr 8:36,766,977...36,769,162
JBrowse link
G Pus7 pseudouridine synthase 7 ISO (PMID:28073919) RGD PMID:28073919 NCBI chr 4:7,889,727...7,931,357
Ensembl chr 4:7,889,869...7,930,706
JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:28073919)
UniProt
RGD
PMID:28073919, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:278,311,362...278,418,347
Ensembl chr 1:278,311,244...278,418,336
JBrowse link
negative regulation of mRNA modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag4 BAG cochaperone 4 IMP RGD PMID:14559896 RGD:2325853 NCBI chr16:71,057,709...71,075,874
Ensembl chr16:71,058,022...71,075,320
JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C IDA RGD PMID:9792439 RGD:10041038 NCBI chr15:28,486,605...28,517,353
Ensembl chr15:28,486,617...28,517,353
JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein IMP RGD PMID:11134005 RGD:10059415 NCBI chr 8:96,100,692...96,266,342
Ensembl chr 8:96,105,025...96,266,342
JBrowse link
oxidative RNA demethylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:31188562) RGD PMID:31188562 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISS
ISO
GO_REF:0000024
(PMID:24360279)
UniProt
RGD
PMID:24360279 GO_REF:0000024 NCBI chr10:105,781,752...105,787,803
Ensembl chr10:105,781,753...105,787,803
JBrowse link
oxidative single-stranded RNA demethylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase ISO (PMID:26863196), (PMID:26863410) RGD PMID:26863196, PMID:26863410 NCBI chr 3:82,874,242...82,907,467
Ensembl chr 3:82,874,248...82,906,581
JBrowse link
G Alkbh5 alkB homolog 5, RNA demethylase ISS
ISO
IBA
GO_REF:0000024
(MGI:MGI:6111276|PMID:29279410)
(PMID:23177736), (PMID:24616105)
PMID:21873635
UniProt
RGD
PMID:23177736, PMID:24616105, PMID:29279410, PMID:21873635 GO_REF:0000024, MGI:MGI:6111276, RGD:13792537 NCBI chr10:46,906,314...46,927,759
Ensembl chr10:46,906,115...46,930,579
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase ISO
IBA
ISS
IEA
(MGI:MGI:3817348|PMID:18775698)
PMID:21873635
(PMID:18775698), (PMID:22002720), (PMID:25452335), (PMID:26457839), (PMID:26458103), (PMID:28002401), (PMID:30197295)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:18775698, PMID:22002720, PMID:25452335, PMID:26457839, PMID:26458103, PMID:28002401, PMID:30197295, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3817348, RGD:13792537 NCBI chr19:16,774,549...17,115,098
Ensembl chr19:16,772,744...17,115,113
JBrowse link
positive regulation of mRNA modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IDA RGD PMID:9792439 RGD:10041038 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
primary miRNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl3 methyltransferase-like 3 ISO
IBA
(PMID:25799998)
PMID:21873635
RGD PMID:25799998, PMID:21873635 RGD:13792537 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
pseudouridine synthesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:155,844,914...155,862,363
Ensembl chr  X:155,844,857...155,862,475
JBrowse link
G Gar1 GAR1 ribonucleoprotein IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:235,250,453...235,258,464
Ensembl chr 2:235,250,453...235,257,731
JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:24,582,000...24,612,773
Ensembl chr16:24,578,678...24,612,732
JBrowse link
G Pus7 pseudouridine synthase 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:7,889,727...7,931,357
Ensembl chr 4:7,889,869...7,930,706
JBrowse link
G Pus7l pseudouridine synthase 7 like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:135,765,307...135,803,818
Ensembl chr 7:135,765,303...135,800,481
JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:8,338,479...8,348,746
Ensembl chr 3:8,338,484...8,348,746
JBrowse link
RNA (guanine-N7)-methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl1 methyltransferase like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,328,470...70,333,045
Ensembl chr 7:70,328,391...70,333,166
JBrowse link
RNA 5'-cap (guanine-N7)-methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ramac RNA guanine-7 methyltransferase activating subunit IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:143,583,675...143,589,563
Ensembl chr 1:143,583,675...143,589,556
JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr18:64,084,746...64,108,246
Ensembl chr18:64,084,795...64,108,246
JBrowse link
RNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07012856.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:211,740,637...211,753,297 JBrowse link
G Bcdin3d BCDIN3 domain containing RNA methyltransferase ISO
ISS
(PMID:23063121)
GO_REF:0000024
RGD
UniProt
PMID:23063121 GO_REF:0000024 NCBI chr 7:141,132,106...141,136,700
Ensembl chr 7:141,132,133...141,136,700
JBrowse link
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:14,993,685...15,006,010
Ensembl chr  X:14,994,016...15,002,074
JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:30626973)
UniProt
RGD
PMID:30626973, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:94,439,059...94,445,503
Ensembl chr10:94,439,077...94,445,503
JBrowse link
G Henmt1 HEN methyltransferase 1 ISO
ISS
(MGI:MGI:4947214|PMID:17652135)
(PMID:11283698)
GO_REF:0000024
RGD
UniProt
PMID:11283698, PMID:17652135 GO_REF:0000024, MGI:MGI:4947214 NCBI chr 2:211,740,571...211,753,718 JBrowse link
G LOC103690007 5-methylcytosine rRNA methyltransferase NSUN4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:134,362,953...134,383,690
Ensembl chr 5:134,362,680...134,382,794
JBrowse link
G Mepce methylphosphate capping enzyme ISO (PMID:17643375), (PMID:19906723), (PMID:24360279), (PMID:28431135), (PMID:30559425) RGD PMID:17643375, PMID:19906723, PMID:24360279, PMID:28431135, PMID:30559425 NCBI chr12:21,721,246...21,725,965
Ensembl chr12:21,721,837...21,725,435
JBrowse link
G Mettl14 methyltransferase like 14 ISO (MGI:MGI:6103038|PMID:28914256) RGD PMID:28914256 MGI:MGI:6103038 NCBI chr 2:227,566,811...227,583,047
Ensembl chr 2:227,566,815...227,582,895
JBrowse link
G Mettl16 methyltransferase like 16 ISO (MGI:MGI:6114846|PMID:29262316) RGD PMID:29262316 MGI:MGI:6114846 NCBI chr10:61,626,595...61,682,947
Ensembl chr10:61,626,597...61,672,136
JBrowse link
G Mettl3 methyltransferase-like 3 ISO
IBA
(PMID:9409616)
PMID:21873635
(MGI:MGI:6095345|PMID:28637692), (MGI:MGI:6103038|PMID:28914256), (MGI:MGI:6103202|PMID:28809392)
RGD PMID:9409616, PMID:28637692, PMID:28809392, PMID:28914256, PMID:21873635 MGI:MGI:6095345, MGI:MGI:6103038, MGI:MGI:6103202, RGD:13792537 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
G Mettl4 methyltransferase like 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:119,871,519...119,953,248
Ensembl chr 9:119,873,170...119,897,268
JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:16,398,749...16,403,656
Ensembl chr12:16,398,749...16,403,656
JBrowse link
G Nop2 NOP2 nucleolar protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,646,759...157,658,502
Ensembl chr 4:157,647,082...157,658,390
JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:36,295,650...36,319,906
Ensembl chr 1:36,295,650...36,319,966
JBrowse link
G Nsun3 NOP2/Sun RNA methyltransferase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:38,535,971...38,590,274
Ensembl chr11:38,536,165...38,590,107
JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:134,885,377...134,905,492
Ensembl chr 5:134,886,497...134,905,588
JBrowse link
G Nsun5 NOP2/Sun RNA methyltransferase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:24,341,940...24,346,900
Ensembl chr12:24,341,928...24,346,918
JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:82,020,316...82,060,533
Ensembl chr17:82,022,490...82,060,123
JBrowse link
G Rbm15 RNA binding motif protein 15 ISO (PMID:27602518) RGD PMID:27602518 NCBI chr 2:210,079,678...210,090,200
Ensembl chr 2:210,081,770...210,088,949
JBrowse link
G Rbm15b RNA binding motif protein 15B ISO (PMID:27602518) RGD PMID:27602518 NCBI chr 8:115,618,242...115,623,068
Ensembl chr 8:115,618,555...115,621,394
JBrowse link
G Trmt2a tRNA methyltransferase 2 homolog A IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:86,885,671...86,890,482
Ensembl chr11:86,885,626...86,890,390
JBrowse link
rRNA (guanine-N7)-methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor ISO
IBA
(PMID:25851604)
PMID:21873635
RGD PMID:25851604, PMID:21873635 RGD:13792537 NCBI chr12:24,669,626...24,680,833
Ensembl chr12:24,669,449...24,680,818
JBrowse link
G Trmt112 tRNA methyltransferase subunit 11-2 ISO
IBA
(PMID:25851604)
PMID:21873635
RGD PMID:25851604, PMID:21873635 RGD:13792537 NCBI chr 1:222,167,927...222,168,780
Ensembl chr 1:222,167,927...222,168,776
JBrowse link
rRNA 2'-O-methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrm1 mitochondrial rRNA methyltransferase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:72,136,241...72,143,075
Ensembl chr10:72,136,246...72,142,533
JBrowse link
G Mrm3 mitochondrial rRNA methyltransferase 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:64,398,308...64,406,193
Ensembl chr10:64,398,339...64,405,017
JBrowse link
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nat10 N-acetyltransferase 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:93,658,119...93,698,136
Ensembl chr 3:93,658,117...93,698,136
JBrowse link
rRNA base methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emg1 EMG1 N1-specific pseudouridine methyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,222,366...157,230,647
Ensembl chr 4:157,222,385...157,230,647
JBrowse link
G Fdxacb1 ferredoxin-fold anticodon binding domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:55,196,758...55,201,610
Ensembl chr 8:55,196,758...55,201,199
JBrowse link
G Mettl15 methyltransferase like 15 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:100,186,106...100,366,148
Ensembl chr 3:100,183,405...100,364,400
JBrowse link
G Mettl16 methyltransferase like 16 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:61,626,595...61,682,947
Ensembl chr10:61,626,597...61,672,136
JBrowse link
G Nop2 NOP2 nucleolar protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,646,759...157,658,502
Ensembl chr 4:157,647,082...157,658,390
JBrowse link
G Nsun5 NOP2/Sun RNA methyltransferase 5 ISO
IBA
(PMID:31428936), (PMID:31722427)
PMID:21873635
(MGI:MGI:6414744|PMID:31722427)
RGD PMID:31428936, PMID:31722427, PMID:21873635 MGI:MGI:6414744, RGD:13792537 NCBI chr12:24,341,940...24,346,900
Ensembl chr12:24,341,928...24,346,918
JBrowse link
rRNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmt2 base methyltransferase of 25S rRNA 2 homolog IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:40,064,131...40,136,074
Ensembl chr 4:40,063,932...40,136,061
JBrowse link
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor ISO
IBA
(PMID:25851604)
PMID:21873635
RGD PMID:25851604, PMID:21873635 RGD:13792537 NCBI chr 2:38,120,562...38,144,871
Ensembl chr 2:38,120,592...38,144,327
JBrowse link
G Fbl fibrillarin ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:30540930)
UniProt
RGD
PMID:30540930, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:85,103,519...85,112,619
Ensembl chr 1:85,103,519...85,112,619
JBrowse link
G Fbll1 fibrillarin-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:20,620,957...20,622,600
Ensembl chr10:20,620,957...20,622,600
JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:94,439,059...94,445,503
Ensembl chr10:94,439,077...94,445,503
JBrowse link
G LOC103690007 5-methylcytosine rRNA methyltransferase NSUN4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:134,362,953...134,383,690
Ensembl chr 5:134,362,680...134,382,794
JBrowse link
G Mettl5 methyltransferase like 5 ISO (PMID:31328227), (PMID:32217665) RGD PMID:31328227, PMID:32217665 NCBI chr 3:56,101,597...56,113,823
Ensembl chr 3:56,101,580...56,113,857
JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:16,398,749...16,403,656
Ensembl chr12:16,398,749...16,403,656
JBrowse link
G Nsun3 NOP2/Sun RNA methyltransferase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:38,535,971...38,590,274
Ensembl chr11:38,536,165...38,590,107
JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 ISO
IBA
(PMID:23022348)
PMID:21873635
(MGI:MGI:5573024|PMID:24516400)
RGD PMID:23022348, PMID:24516400, PMID:21873635 MGI:MGI:5573024, RGD:13792537 NCBI chr 5:134,885,377...134,905,492
Ensembl chr 5:134,886,497...134,905,588
JBrowse link
G Tfb1m transcription factor B1, mitochondrial IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 1:44,433,116...44,474,674
Ensembl chr 1:44,433,116...44,474,674
JBrowse link
G Tfb2m transcription factor B2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:97,820,493...97,838,275
Ensembl chr13:97,820,493...97,838,228
JBrowse link
G Trmt112 tRNA methyltransferase subunit 11-2 ISO (PMID:31328227) RGD PMID:31328227 NCBI chr 1:222,167,927...222,168,780
Ensembl chr 1:222,167,927...222,168,776
JBrowse link
G Zcchc4 zinc finger CCHC-type containing 4 ISS
IBA
ISO
IEA
GO_REF:0000024
PMID:21873635
(PMID:30531910), (PMID:31328227), (PMID:31695039), (PMID:31799605)
GO_REF:0000002
UniProt
RGD
InterPro
PMID:30531910, PMID:31328227, PMID:31695039, PMID:31799605, PMID:21873635 GO_REF:0000002, GO_REF:0000024, RGD:13792537 NCBI chr14:60,511,494...60,553,167
Ensembl chr14:60,511,497...60,552,990
JBrowse link
rRNA pseudouridine synthesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 ISO
IBA
MGI:MGI:2446500|MGI:MGI:3849598|MGI:MGI:3849599 (MGI:MGI:3047190|PMID:15240872), (MGI:MGI:5499053|PMID:23726835)
PMID:21873635
RGD PMID:15240872, PMID:23726835, PMID:21873635 MGI:MGI:3047190, MGI:MGI:5499053, RGD:13792537 NCBI chr  X:155,844,914...155,862,363
Ensembl chr  X:155,844,857...155,862,475
JBrowse link
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:37,069,387...37,072,758
Ensembl chr10:37,069,344...37,072,733
JBrowse link
G Nhp2 NHP2 ribonucleoprotein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:34,975,701...34,979,082
Ensembl chr10:34,975,708...34,979,082
JBrowse link
G Nop10 NOP10 ribonucleoprotein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:103,747,654...103,748,739
Ensembl chr 3:103,747,654...103,748,739
JBrowse link
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 IDA RGD PMID:12446766 RGD:633420 NCBI chr  X:155,844,914...155,862,363
Ensembl chr  X:155,844,857...155,862,475
JBrowse link
G Gar1 GAR1 ribonucleoprotein IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:12446766, PMID:21873635 RGD:633420, RGD:13792537 NCBI chr 2:235,250,453...235,258,464
Ensembl chr 2:235,250,453...235,257,731
JBrowse link
G Nhp2 NHP2 ribonucleoprotein IDA RGD PMID:12446766 RGD:633420 NCBI chr10:34,975,701...34,979,082
Ensembl chr10:34,975,708...34,979,082
JBrowse link
G Nop10 NOP10 ribonucleoprotein IDA RGD PMID:12446766 RGD:633420 NCBI chr 3:103,747,654...103,748,739
Ensembl chr 3:103,747,654...103,748,739
JBrowse link
snRNA (adenine-N6)-methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl16 methyltransferase like 16 ISO (PMID:28525753), (PMID:29051200), (PMID:32266935) RGD PMID:28525753, PMID:29051200, PMID:32266935 NCBI chr10:61,626,595...61,682,947
Ensembl chr10:61,626,597...61,672,136
JBrowse link
G Mettl4 methyltransferase like 4 ISO (PMID:31913360) RGD PMID:31913360 NCBI chr 9:119,871,519...119,953,248
Ensembl chr 9:119,873,170...119,897,268
JBrowse link
snRNA modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100910540 7SK snRNA methylphosphate capping enzyme-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:21,981,708...21,986,474
Ensembl chr12:21,981,755...21,986,473
JBrowse link
G Mepce methylphosphate capping enzyme IBA
ISO
PMID:21873635
(PMID:17643375), (PMID:19906723), (PMID:24360279), (PMID:30559425)
RGD PMID:17643375, PMID:19906723, PMID:24360279, PMID:30559425, PMID:21873635 RGD:13792537 NCBI chr12:21,721,246...21,725,965
Ensembl chr12:21,721,837...21,725,435
JBrowse link
snRNA pseudouridine synthesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:155,844,914...155,862,363
Ensembl chr  X:155,844,857...155,862,475
JBrowse link
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:37,069,387...37,072,758
Ensembl chr10:37,069,344...37,072,733
JBrowse link
G Nhp2 NHP2 ribonucleoprotein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:34,975,701...34,979,082
Ensembl chr10:34,975,708...34,979,082
JBrowse link
G Nop10 NOP10 ribonucleoprotein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:103,747,654...103,748,739
Ensembl chr 3:103,747,654...103,748,739
JBrowse link
tRNA (guanine-N7)-methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl1 methyltransferase like 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:70,328,470...70,333,045
Ensembl chr 7:70,328,391...70,333,166
JBrowse link
G Wdr4 WD repeat domain 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:10,240,571...10,264,818
Ensembl chr20:10,239,154...10,257,044
JBrowse link
tRNA acetylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nat10 N-acetyltransferase 10 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:93,658,119...93,698,136
Ensembl chr 3:93,658,117...93,698,136
JBrowse link
tRNA C5-cytosine methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun6 NOP2/Sun RNA methyltransferase 6 ISO (PMID:26160102) RGD PMID:26160102 NCBI chr17:82,020,316...82,060,533
Ensembl chr17:82,022,490...82,060,123
JBrowse link
tRNA demethylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:27745969) RGD PMID:27745969 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
tRNA dihydrouridine synthesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dus1l dihydrouridine synthase 1-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:109,972,018...109,979,113
Ensembl chr10:109,972,037...109,979,712
JBrowse link
G Dus2 dihydrouridine synthase 2 ISO
IBA
(PMID:26429968)
PMID:21873635
RGD PMID:26429968, PMID:21873635 RGD:13792537 NCBI chr19:37,990,374...38,033,590
Ensembl chr19:37,990,374...38,033,590
JBrowse link
G Dus3l dihydrouridine synthase 3-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:10,289,440...10,294,213
Ensembl chr 9:10,289,446...10,293,980
JBrowse link
G Dus4l dihydrouridine synthase 4-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:50,925,987...50,943,546
Ensembl chr 6:50,928,397...50,943,488
JBrowse link
tRNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07052486.1 IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr 3:57,257,394...57,646,610 JBrowse link
G Alkbh8 alkB homolog 8, tRNA methyltransferase ISO (MGI:MGI:4461096|PMID:20123966)
(PMID:20308323), (PMID:31079898)
RGD PMID:20123966, PMID:20308323, PMID:31079898 MGI:MGI:4461096 NCBI chr 6:18,877,885...18,952,773
Ensembl chr 6:18,877,907...18,949,393
JBrowse link
G Bcdin3d BCDIN3 domain containing RNA methyltransferase ISS
ISO
GO_REF:0000024
(PMID:28119416), (PMID:31919512)
UniProt
RGD
PMID:28119416, PMID:31919512 GO_REF:0000024 NCBI chr 7:141,132,106...141,136,700
Ensembl chr 7:141,132,133...141,136,700
JBrowse link
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:14,993,685...15,006,010
Ensembl chr  X:14,994,016...15,002,074
JBrowse link
G Gtpbp3 GTP binding protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:19,897,135...19,902,226
Ensembl chr16:19,896,986...19,902,245
JBrowse link
G Lcmt2 leucine carboxyl methyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:113,089,646...113,091,770
Ensembl chr 3:113,089,647...113,091,770
JBrowse link
G LOC103692719 tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:136,244,466...136,250,496
Ensembl chr 6:136,150,785...136,250,752
JBrowse link
G Mettl1 methyltransferase like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,328,470...70,333,045
Ensembl chr 7:70,328,391...70,333,166
JBrowse link
G Mettl2 methyltransferase like 2 ISO MGI:MGI:5903740 (MGI:MGI:5903638|PMID:28655767)
(PMID:28655767)
RGD PMID:28655767 MGI:MGI:5903638 NCBI chr10:93,353,944...93,367,769
Ensembl chr10:93,354,003...93,379,470
JBrowse link
G Mettl6 methyltransferase like 6 ISO MGI:MGI:5903741 (MGI:MGI:5903638|PMID:28655767)
(PMID:28655767)
RGD PMID:28655767 MGI:MGI:5903638 NCBI chr16:7,559,964...7,588,841
Ensembl chr16:7,573,750...7,588,841
JBrowse link
G Mto1 mitochondrial tRNA translation optimization 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:85,807,703...85,832,263
Ensembl chr 8:85,808,125...85,831,937
JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 ISO
IBA
(PMID:17071714), (PMID:31287866)
(MGI:MGI:5304206|PMID:22144916), (MGI:MGI:6194005|PMID:22885326), (MGI:MGI:6368097|PMID:31287866), (MGI:MGI:6368099|PMID:23871666), (MGI:MGI:6368109|PMID:31276587)
PMID:21873635
RGD PMID:17071714, PMID:22144916, PMID:22885326, PMID:23871666, PMID:31276587, PMID:31287866, PMID:21873635 MGI:MGI:5304206, MGI:MGI:6194005, MGI:MGI:6368097, MGI:MGI:6368099, MGI:MGI:6368109, RGD:13792537 NCBI chr 1:36,295,650...36,319,906
Ensembl chr 1:36,295,650...36,319,966
JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 ISO (PMID:28531330) RGD PMID:28531330 NCBI chr17:82,020,316...82,060,533
Ensembl chr17:82,022,490...82,060,123
JBrowse link
G Tarbp1 TAR (HIV-1) RNA binding protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:59,331,399...59,384,807
Ensembl chr19:59,333,184...59,384,297
JBrowse link
G Thada THADA, armadillo repeat containing IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:7,423,555...7,741,431
Ensembl chr 6:7,423,520...7,741,414
JBrowse link
G Thumpd2 THUMP domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:3,743,080...3,794,512
Ensembl chr 6:3,743,074...3,794,501
JBrowse link
G Thumpd3 THUMP domain containing 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:144,985,850...145,010,164
Ensembl chr 4:144,985,880...145,008,831
JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 ISO
ISS
(PMID:16424344)
MGI:MGI:3695409 (MGI:MGI:3612372|PMID:16424344), (MGI:MGI:6194005|PMID:22885326)
GO_REF:0000024
RGD
UniProt
PMID:16424344, PMID:22885326 GO_REF:0000024, MGI:MGI:3612372, MGI:MGI:6194005 NCBI chr17:80,824,652...80,859,585
Ensembl chr17:80,826,846...80,860,195
JBrowse link
G Trmo tRNA methyltransferase O ISO
ISS
(PMID:25063302)
GO_REF:0000024
RGD
UniProt
PMID:25063302 GO_REF:0000024 NCBI chr 5:61,992,507...62,001,065
Ensembl chr 5:61,990,328...62,001,196
JBrowse link
G Trmt10a tRNA methyltransferase 10A ISO
ISS
(PMID:25053765)
GO_REF:0000024
RGD
UniProt
PMID:25053765 GO_REF:0000024 NCBI chr 2:243,422,811...243,437,533
Ensembl chr 2:243,422,811...243,438,050
JBrowse link
G Trmt10b tRNA methyltransferase 10B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:60,841,517...60,866,480
Ensembl chr 5:60,850,852...60,865,207
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:47,047,342...47,052,420
Ensembl chr11:47,047,342...47,052,418
JBrowse link
G Trmt11 tRNA methyltransferase 11 homolog IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:29,432,109...29,576,079
Ensembl chr 1:29,432,152...29,487,473
JBrowse link
G Trmt112 tRNA methyltransferase subunit 11-2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:222,167,927...222,168,780
Ensembl chr 1:222,167,927...222,168,776
JBrowse link
G Trmt12 tRNA methyltransferase 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:98,748,547...98,750,173
Ensembl chr 7:98,748,547...98,750,171
JBrowse link
G Trmt13 tRNA methyltransferase 13 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:219,615,665...219,628,824
Ensembl chr 2:219,615,420...219,628,997
JBrowse link
G Trmt44 tRNA methyltransferase 44 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:80,361,490...80,379,408
Ensembl chr14:80,361,294...80,383,138
JBrowse link
G Trmt5 tRNA methyltransferase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:96,164,579...96,171,680
Ensembl chr 6:96,153,014...96,171,779
JBrowse link
G Trmt6 tRNA methyltransferase 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:125,458,692...125,470,413
Ensembl chr 3:125,458,692...125,470,413
JBrowse link
G Trmt61a tRNA methyltransferase 61A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:136,150,768...136,156,785
Ensembl chr 6:136,150,785...136,250,752
JBrowse link
G Trmt9b tRNA methyltransferase 9B (putative) IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:59,316,145...59,368,559
Ensembl chr16:59,317,699...59,366,824
JBrowse link
G Tyw3 tRNA-yW synthesizing protein 3 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:260,861,825...260,884,270
Ensembl chr 2:260,861,790...260,884,449
JBrowse link
tRNA methylthiolation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:149,835,953...149,870,429
Ensembl chr 3:149,703,848...149,870,413
JBrowse link
G Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 ISO
IBA
MGI:MGI:5301443 (MGI:MGI:5297757|PMID:21841312)
PMID:21873635
RGD PMID:21841312, PMID:21873635 MGI:MGI:5297757, RGD:13792537 NCBI chr17:36,451,031...37,157,882
Ensembl chr17:36,451,058...37,295,069
JBrowse link
tRNA modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005588.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:189,457,583...189,460,844 JBrowse link
G AABR07005618.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:190,368,884...190,370,499 JBrowse link
G Aars1 alanyl-tRNA synthetase 1 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:MGI:3640843|PMID:16906134), (MGI:MGI:5609717|PMID:25422440), (MGI:MGI:6159204|PMID:29769718)
UniProt
RGD
PMID:16906134, PMID:25422440, PMID:29769718, PMID:21873635 GO_REF:0000024, MGI:MGI:3640843, MGI:MGI:5609717, MGI:MGI:6159204, RGD:13792537 NCBI chr19:43,193,264...43,215,281
Ensembl chr19:43,193,257...43,215,281
JBrowse link
G Aars2 alanyl-tRNA synthetase 2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:17,869,301...17,881,762
Ensembl chr 9:17,869,124...17,880,706
JBrowse link
G Ankrd16 ankyrin repeat domain 16 ISS
ISO
GO_REF:0000024
(MGI:MGI:6159204|PMID:29769718)
UniProt
RGD
PMID:29769718 GO_REF:0000024, MGI:MGI:6159204 NCBI chr17:70,384,883...70,398,089
Ensembl chr17:70,386,707...70,398,769
JBrowse link
G Dtwd1 DTW domain containing 1 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:31804502)
UniProt
Ensembl
RGD
PMID:31804502 GO_REF:0000024, GO_REF:0000107 NCBI chr 3:118,427,790...118,443,003
Ensembl chr 3:118,430,511...118,442,098
JBrowse link
G Dtwd2 DTW domain containing 2 ISO (PMID:31804502) RGD PMID:31804502 NCBI chr18:43,857,371...43,945,732
Ensembl chr18:43,857,970...43,945,273
JBrowse link
G Mettl1 methyltransferase like 1 ISO (PMID:12403464), (PMID:15861136) RGD PMID:12403464, PMID:15861136 NCBI chr 7:70,328,470...70,333,045
Ensembl chr 7:70,328,391...70,333,166
JBrowse link
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:22,447,057...22,454,328
Ensembl chr 8:22,446,661...22,454,439
JBrowse link
G RGD1311345 similar to CG9752-PA IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:6,683,152...6,690,724
Ensembl chr17:6,683,152...6,690,723
JBrowse link
G Thg1l tRNA-histidine guanylyltransferase 1-like ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:31,043,647...31,052,092
Ensembl chr10:31,043,688...31,052,102
JBrowse link
G Trit1 tRNA isopentenyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:140,711,943...140,756,893
Ensembl chr 5:140,712,583...140,756,085
JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:278,311,362...278,418,347
Ensembl chr 1:278,311,244...278,418,336
JBrowse link
G Wdr4 WD repeat domain 4 ISO (PMID:15861136) RGD PMID:15861136 NCBI chr20:10,240,571...10,264,818
Ensembl chr20:10,239,154...10,257,044
JBrowse link
tRNA N1-guanine methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10a tRNA methyltransferase 10A ISO
IEA
(PMID:32392304)
GO_REF:0000107
RGD
Ensembl
PMID:32392304 GO_REF:0000107 NCBI chr 2:243,422,811...243,437,533
Ensembl chr 2:243,422,811...243,438,050
JBrowse link
G Trmt5 tRNA methyltransferase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:96,164,579...96,171,680
Ensembl chr 6:96,153,014...96,171,779
JBrowse link
tRNA N2-guanine methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt1 tRNA methyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:25,798,262...25,813,458
Ensembl chr19:25,803,262...25,813,467
JBrowse link
G Trmt1l tRNA methyltransferase 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:68,785,889...68,819,018
Ensembl chr13:68,785,827...68,818,990
JBrowse link
tRNA nucleoside ribose methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr  X:14,993,685...15,006,010
Ensembl chr  X:14,994,016...15,002,074
JBrowse link
tRNA pseudouridine synthesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus1 pseudouridine synthase 1 ISO
IBA
(MGI:MGI:1928307|PMID:11085940), (MGI:MGI:1928672|PMID:10094309), (MGI:MGI:2672074|PMID:11027153), (MGI:MGI:3053242|PMID:15327771)
PMID:21873635
RGD PMID:10094309, PMID:11027153, PMID:11085940, PMID:15327771, PMID:21873635 MGI:MGI:1928307, MGI:MGI:1928672, MGI:MGI:2672074, MGI:MGI:3053242, RGD:13792537 NCBI chr12:51,936,721...51,945,930
Ensembl chr12:51,937,175...51,945,928
JBrowse link
G Pus10 pseudouridine synthase 10 ISO
IBA
(PMID:30530625), (PMID:31819270)
PMID:21873635
RGD PMID:30530625, PMID:31819270, PMID:21873635 RGD:13792537 NCBI chr14:108,411,941...108,479,696
Ensembl chr14:108,412,152...108,479,781
JBrowse link
G Pus3 pseudouridine synthase 3 ISO
IBA
(MGI:MGI:2672074|PMID:11027153)
PMID:21873635
(PMID:27055666)
RGD PMID:11027153, PMID:27055666, PMID:21873635 MGI:MGI:2672074, RGD:13792537 NCBI chr 8:36,760,874...36,769,167
Ensembl chr 8:36,766,977...36,769,162
JBrowse link
G Pus7 pseudouridine synthase 7 ISO (PMID:29628141) RGD PMID:29628141 NCBI chr 4:7,889,727...7,931,357
Ensembl chr 4:7,889,869...7,930,706
JBrowse link
G Pusl1 pseudouridine synthase like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:173,326,755...173,339,934
Ensembl chr 5:173,336,034...173,340,026
JBrowse link
tRNA thio-modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctu1 cytosolic thiouridylase subunit 1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:99,599,608...99,605,412
Ensembl chr 1:99,599,620...99,605,412
JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 ISS
IEA
GO_REF:0000024
GO_REF:0000104
UniProt GO_REF:0000024, GO_REF:0000104 NCBI chr19:55,300,531...55,305,543
Ensembl chr19:55,300,395...55,305,702
JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:164,986,421...164,988,381
Ensembl chr 3:164,986,421...164,988,369
JBrowse link
G Urm1 ubiquitin related modifier 1 ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:8,389,024...8,405,868
Ensembl chr 3:8,389,024...8,405,868
JBrowse link
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osgep O-sialoglycoprotein endopeptidase ISS
ISO
GO_REF:0000024
(PMID:28805828)
UniProt
RGD
PMID:28805828 GO_REF:0000024 NCBI chr15:27,842,447...27,849,866
Ensembl chr15:27,842,422...27,849,974
JBrowse link
G Osgepl1 O-sialoglycoprotein endopeptidase-like 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:53,084,042...53,098,029
Ensembl chr 9:53,084,045...53,097,979
JBrowse link
G Tprkb Tp53rk binding protein ISS
ISO
GO_REF:0000024
(PMID:28805828)
UniProt
RGD
PMID:28805828 GO_REF:0000024 NCBI chr 4:117,589,527...117,604,481
Ensembl chr 4:117,780,533...117,785,941
Ensembl chr 4:117,780,533...117,785,941
JBrowse link
tRNA wobble adenosine to inosine editing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adat2 adenosine deaminase, tRNA-specific 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:7,726,447...7,743,112
Ensembl chr 1:7,726,529...7,742,484
JBrowse link
G Adat3 adenosine deaminase, tRNA-specific 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,977,285...11,981,814 JBrowse link
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elp1 elongator acetyltransferase complex subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:73,503,406...73,552,798
Ensembl chr 5:73,503,407...73,552,798
JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:48,942,866...49,005,074
Ensembl chr15:48,942,871...49,005,058
JBrowse link
tRNA wobble base cytosine methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun3 NOP2/Sun RNA methyltransferase 3 ISO (PMID:27214402), (PMID:27356879), (PMID:27497299) RGD PMID:27214402, PMID:27356879, PMID:27497299 NCBI chr11:38,535,971...38,590,274
Ensembl chr11:38,536,165...38,590,107
JBrowse link
tRNA wobble cytosine modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:27497299) RGD PMID:27497299 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
tRNA wobble position uridine thiolation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctu1 cytosolic thiouridylase subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:99,599,608...99,605,412
Ensembl chr 1:99,599,620...99,605,412
JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:55,300,531...55,305,543
Ensembl chr19:55,300,395...55,305,702
JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:164,986,421...164,988,381
Ensembl chr 3:164,986,421...164,988,369
JBrowse link
G Trmu tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:126,756,140...126,772,749
Ensembl chr 7:126,756,151...126,772,749
JBrowse link
tRNA wobble uridine modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053185.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:95,838,262...95,954,983 JBrowse link
G Alkbh8 alkB homolog 8, tRNA methyltransferase ISO
IBA
(MGI:MGI:5607402|PMID:20583019)
PMID:21873635
(PMID:21285950), (PMID:31079898)
RGD PMID:20583019, PMID:21285950, PMID:31079898, PMID:21873635 MGI:MGI:5607402, RGD:13792537 NCBI chr 6:18,877,885...18,952,773
Ensembl chr 6:18,877,907...18,949,393
JBrowse link
G Ctu1 cytosolic thiouridylase subunit 1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:99,599,608...99,605,412
Ensembl chr 1:99,599,620...99,605,412
JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 ISS
IEA
GO_REF:0000024
GO_REF:0000104
UniProt GO_REF:0000024, GO_REF:0000104 NCBI chr19:55,300,531...55,305,543
Ensembl chr19:55,300,395...55,305,702
JBrowse link
G Dph3 diphthamide biosynthesis 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:8,202,048...8,207,492
Ensembl chr16:8,202,048...8,207,464
JBrowse link
G Elp1 elongator acetyltransferase complex subunit 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:73,503,406...73,552,798
Ensembl chr 5:73,503,407...73,552,798
JBrowse link
G Elp2 elongator acetyltransferase complex subunit 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:16,544,515...16,581,086
Ensembl chr18:16,544,508...16,581,116
JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 ISO (PMID:29415125) RGD PMID:29415125 NCBI chr15:48,942,866...49,005,074
Ensembl chr15:48,942,871...49,005,058
JBrowse link
G Elp5 elongator acetyltransferase complex subunit 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:56,578,980...56,590,706
Ensembl chr10:56,578,985...56,591,364
JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:118,525,770...118,541,074
Ensembl chr 8:118,525,682...118,541,073
JBrowse link
G Gtpbp3 GTP binding protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:19,897,135...19,902,226
Ensembl chr16:19,896,986...19,902,245
JBrowse link
G Kti12 KTI12 chromatin associated homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:128,464,035...128,465,557 JBrowse link
G LOC365839 similar to elongation protein 4 homolog IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:186,630,203...186,631,703
Ensembl chr 2:186,630,278...186,631,633
JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:164,986,421...164,988,381
Ensembl chr 3:164,986,421...164,988,369
JBrowse link
G Mto1 mitochondrial tRNA translation optimization 1 ISO
IBA
SGD:S000003205 (MGI:MGI:2677576|PMID:14522080)
PMID:21873635
RGD PMID:14522080, PMID:21873635 MGI:MGI:2677576, RGD:13792537 NCBI chr 8:85,807,703...85,832,263
Ensembl chr 8:85,808,125...85,831,937
JBrowse link
G Trmt9b tRNA methyltransferase 9B (putative) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:59,316,145...59,368,559
Ensembl chr16:59,317,699...59,366,824
JBrowse link
G Urm1 ubiquitin related modifier 1 ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:8,389,024...8,405,868
Ensembl chr 3:8,389,024...8,405,868
JBrowse link
tRNA-guanine transglycosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 ISO
IEA
(PMID:20354154)
GO_REF:0000104
(MGI:MGI:3850292|PMID:19414587)
RGD
UniProt
PMID:19414587, PMID:20354154 GO_REF:0000104, MGI:MGI:3850292 NCBI chr 8:22,447,057...22,454,328
Ensembl chr 8:22,446,661...22,454,439
JBrowse link
G Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 ISO
IBA
(PMID:20354154)
PMID:21873635
(MGI:MGI:3850292|PMID:19414587)
RGD PMID:19414587, PMID:20354154, PMID:21873635 MGI:MGI:3850292, RGD:13792537 NCBI chr11:61,748,822...61,779,631
Ensembl chr11:61,748,878...61,779,631
JBrowse link
G RGD1311345 similar to CG9752-PA IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:6,683,152...6,690,724
Ensembl chr17:6,683,152...6,690,723
JBrowse link
U6 2'-O-snRNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Larp7 La ribonucleoprotein 7, transcriptional regulator ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:MGI:6400674|PMID:32017896)
(PMID:32017898)
UniProt
Ensembl
RGD
PMID:32017896, PMID:32017898 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6400674 NCBI chr 2:231,866,888...231,882,002
Ensembl chr 2:231,867,135...231,881,939
JBrowse link
wybutosine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lcmt2 leucine carboxyl methyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:113,089,646...113,091,770
Ensembl chr 3:113,089,647...113,091,770
JBrowse link
G Tyw1 tRNA-yW synthesizing protein 1 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:29,824,990...29,919,240
Ensembl chr12:29,824,981...29,919,320
JBrowse link
G Tyw5 tRNA-yW synthesizing protein 5 ISO
IBA
(PMID:20739293), (PMID:20972222)
PMID:21873635
RGD PMID:20739293, PMID:20972222, PMID:21873635 RGD:13792537 NCBI chr 9:64,077,841...64,096,265
Ensembl chr 9:64,077,845...64,096,265
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      organic substance metabolic process 11651
        macromolecule metabolic process 10086
          macromolecule modification 4155
            RNA modification 162
              RNA acetylation + 1
              RNA methylation + 79
              RNA nucleotide deletion + 0
              RNA nucleotide insertion + 0
              base conversion or substitution editing + 15
              chloroplast RNA modification + 0
              mRNA modification + 29
              mitochondrial RNA modification + 4
              oxidative RNA demethylation + 5
              primary miRNA modification + 1
              pseudouridine synthesis + 20
              rRNA modification + 35
              snRNA modification + 9
              tRNA modification + 85
Path 2
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      cellular metabolic process 11085
        cellular aromatic compound metabolic process 5715
          nucleobase-containing compound metabolic process 5489
            nucleic acid metabolic process 4985
              RNA metabolic process 4469
                RNA modification 162
                  RNA acetylation + 1
                  RNA methylation + 79
                  RNA nucleotide deletion + 0
                  RNA nucleotide insertion + 0
                  base conversion or substitution editing + 15
                  chloroplast RNA modification + 0
                  mRNA modification + 29
                  mitochondrial RNA modification + 4
                  oxidative RNA demethylation + 5
                  primary miRNA modification + 1
                  pseudouridine synthesis + 20
                  rRNA modification + 35
                  snRNA modification + 9
                  tRNA modification + 85
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.