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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA modification
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Accession:GO:0009451 term browser browse the term
Definition:The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Comment:The term 'RNA editing' (GO:0016547) was merged into 'RNA modification' (GO:0009451) on the basis of statements in the preface of Modification and Editing of RNA (ISBN:1555811337) that there is no clear distinction between modification and editing.
Synonyms:narrow_synonym: RNA editing
 alt_id: GO:0016547
 xref: Wikipedia:RNA_editing


show annotations for term's descendants           Sort by:
 
7-methylguanosine cap hypermethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgs1 trimethylguanosine synthase 1 involved_in ISO
IBA		 (PMID:16687569)
PMID:21873635		 RGD PMID:16687569 PMID:21873635 RGD:13792537 NCBI chr 5:16,524,864...16,558,399
Ensembl chr 5:16,524,874...16,558,399 		JBrowse link
adenosine to inosine editing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adad1 adenosine deaminase domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:119,948,809...120,005,920
Ensembl chr 2:119,948,926...120,005,913 		JBrowse link
G Adad2 adenosine deaminase domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:47,665,288...47,669,433
Ensembl chr19:47,665,309...47,669,436 		JBrowse link
G Adar adenosine deaminase, RNA-specific involved_in
acts_upstream_of_or_within		 IBA
ISO
ISS		 PMID:21873635
MGI:3029789 (MGI:3027456|PMID:14615479)
(MGI:5447614|PMID:17369310)
GO_REF:0000024
(PMID:15858013), (PMID:16475990), (PMID:19651874), (PMID:21289159)		 RGD
UniProt		 PMID:14615479 PMID:15858013 PMID:16475990 PMID:17369310 PMID:19651874 More... GO_REF:0000024 MGI:3027456 MGI:5447614, RGD:13792537 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282 		JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in
acts_upstream_of_or_within		 IDA
IEA
ISO
ISS
IBA		 GO_REF:0000107
(MGI:5447614|PMID:17369310)
MGI:4840554 (MGI:4831065|PMID:20826656)
(PMID:18178553), (PMID:21289159), (PMID:32220291)
GO_REF:0000024
PMID:21873635		 Ensembl
RGD
UniProt		 PMID:17369310 PMID:18178553 PMID:20826656 PMID:21289159 PMID:32220291 More... GO_REF:0000024 GO_REF:0000107 MGI:4831065 MGI:5447614, RGD:631737, RGD:13792537 NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
G Adarb2 adenosine deaminase, RNA-specific, B2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:61,750,437...62,300,984
Ensembl chr17:61,756,067...62,300,831 		JBrowse link
G Mettl3 methyltransferase-like 3 involved_in ISO (MGI:5621227|PMID:25569111) RGD PMID:25569111 MGI:5621227 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
G Nudt16 nudix hydrolase 16 involved_in ISO (PMID:20385596) RGD PMID:20385596 NCBI chr 8:105,739,927...105,741,982
Ensembl chr 8:105,739,623...105,741,998 		JBrowse link
base conversion or substitution editing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within ISO (PMID:9020165) RGD PMID:9020165 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282 		JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in IDA
ISO		 (PMID:32220291) RGD PMID:32220291 PMID:10836790 RGD:10450892 NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
cap1 mRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmtr1 cap methyltransferase 1 involved_in ISO
IEA
ISS
IBA		 (PMID:21310715)
GO_REF:0000104
GO_REF:0000024
PMID:21873635		 RGD
UniProt		 PMID:21310715 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr20:7,722,729...7,782,579
Ensembl chr20:7,709,713...7,766,302 		JBrowse link
G Cmtr2 cap methyltransferase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:38,190,718...38,197,549
Ensembl chr19:38,190,642...38,197,804 		JBrowse link
cap2 mRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmtr2 cap methyltransferase 2 involved_in ISO
IBA		 (PMID:21310715)
PMID:21873635		 RGD PMID:21310715 PMID:21873635 RGD:13792537 NCBI chr19:38,190,718...38,197,549
Ensembl chr19:38,190,642...38,197,804 		JBrowse link
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtfmt mitochondrial methionyl-tRNA formyltransferase involved_in ISO
IBA
ISS		 (PMID:25288793)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:25288793 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:65,953,787...65,971,841
Ensembl chr 8:65,953,767...65,971,841 		JBrowse link
cytidine to uridine editing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor acts_upstream_of_or_within
involved_in		 IMP
ISO
IEA
TAS		 MGI:103298 (MGI:5613094|PMID:24916387)
GO_REF:0000107
PMID:12896982		 RGD
Ensembl		 PMID:24916387 PMID:10669759 PMID:12896982 GO_REF:0000107 MGI:5613094, RGD:9587747, RGD:8553404 NCBI chr 1:229,736,037...229,823,499
Ensembl chr 1:229,736,106...229,824,354 		JBrowse link
G Aicda activation-induced cytidine deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 acts_upstream_of_or_within
involved_in		 IDA
ISO
IBA		 MGI:1917115|MGI:2157378|MGI:2384294 (MGI:2157316|PMID:8692961), (MGI:5613094|PMID:24916387)
PMID:21873635		 RGD PMID:8692961 PMID:24916387 PMID:12020819 PMID:21873635 MGI:2157316 MGI:5613094, RGD:625559, RGD:13792537 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
(PMID:10403781)
(MGI:1340097|PMID:10403781)		 RGD PMID:10403781 PMID:21873635 MGI:1340097, RGD:13792537 NCBI chr 9:12,564,955...12,578,461
Ensembl chr 9:12,564,920...12,578,458 		JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G Rbm47 RNA binding motif protein 47 acts_upstream_of_or_within ISO MGI:103298 (MGI:5613094|PMID:24916387) RGD PMID:24916387 MGI:5613094 NCBI chr14:42,053,290...42,191,572
Ensembl chr14:42,154,142...42,189,431 		JBrowse link
enzyme-directed rRNA 2'-O-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397 		JBrowse link
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:25219674)		 UniProt
RGD		 PMID:25219674 GO_REF:0000024
G Rpusd1 RNA pseudouridine synthase domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,751,310...14,755,213
Ensembl chr10:14,751,384...14,755,207 		JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,017,759...106,023,010
Ensembl chr 3:106,017,864...106,023,251 		JBrowse link
G Rpusd3 RNA pseudouridine synthase D3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,553,230...146,562,794
Ensembl chr 4:146,558,562...146,562,794 		JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in ISO (PMID:27084949) RGD PMID:27084949 NCBI chr10:14,257,150...14,259,712
Ensembl chr10:14,257,171...14,259,561 		JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
ISO		 GO_REF:0000024
(PMID:23042678), (PMID:25925575), (PMID:28888424)		 UniProt
RGD		 PMID:23042678 PMID:25925575 PMID:28888424 GO_REF:0000024 NCBI chr  X:21,089,152...21,091,597
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:23042678) RGD PMID:23042678 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in IBA
ISO		 PMID:21873635
(PMID:26189817)		 RGD PMID:26189817 PMID:21873635 RGD:13792537 NCBI chr 6:91,963,558...91,987,660
Ensembl chr 6:91,943,724...91,987,555 		JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO MGI:5750452 (MGI:5635958|PMID:25738458) RGD PMID:25738458 MGI:5635958 NCBI chr 3:142,838,081...142,872,669
Ensembl chr 3:142,708,028...142,872,677 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO
IEA		 (PMID:34774131)
GO_REF:0000107		 RGD
Ensembl		 PMID:34774131 GO_REF:0000107 NCBI chr 5:135,293,472...135,341,522
Ensembl chr 5:135,295,330...135,338,764 		JBrowse link
mitochondrial tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO (PMID:28082677) RGD PMID:28082677 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
SGD:S000003205 (MGI:2677576|PMID:14522080)		 RGD PMID:14522080 PMID:21873635 MGI:2677576, RGD:13792537 NCBI chr 8:79,309,681...79,335,231
Ensembl chr 8:79,309,982...79,335,231 		JBrowse link
mRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbll1 Cbl proto-oncogene like 1 involved_in ISO (PMID:29507755) RGD PMID:29507755 NCBI chr 6:48,071,190...48,086,174
Ensembl chr 6:48,071,190...48,086,444 		JBrowse link
G Cmtr1 cap methyltransferase 1 involved_in ISO
ISS		 (PMID:20713356)
GO_REF:0000024		 RGD
UniProt		 PMID:20713356 GO_REF:0000024 NCBI chr20:7,722,729...7,782,579
Ensembl chr20:7,709,713...7,766,302 		JBrowse link
G Mettl14 methyltransferase like 14 involved_in IBA
ISO		 PMID:21873635
(MGI:5559905|PMID:24394384), (MGI:5927282|PMID:28965759)
(PMID:24316715), (PMID:25719671), (PMID:27281194), (PMID:27373337), (PMID:27627798), (PMID:29290617)		 RGD PMID:24316715 PMID:24394384 PMID:25719671 PMID:27281194 PMID:27373337 More... MGI:5559905 MGI:5927282, RGD:13792537 NCBI chr 2:211,530,598...211,546,858
Ensembl chr 2:211,530,602...211,546,821 		JBrowse link
G Mettl16 methyltransferase like 16 involved_in ISO (MGI:6199095|PMID:30197299)
(PMID:30197297), (PMID:30197299), (PMID:33428944)		 RGD PMID:30197297 PMID:30197299 PMID:33428944 MGI:6199095 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Mettl3 methyltransferase-like 3 involved_in ISO (PMID:22575960), (PMID:24284625), (PMID:24316715), (PMID:25719671), (PMID:27281194), (PMID:27373337), (PMID:27627798), (PMID:28297716)
(MGI:5527005|PMID:24209618), (MGI:5621227|PMID:25569111), (MGI:5621254|PMID:25456834), (MGI:5927282|PMID:28965759), (MGI:6094929|PMID:28792938)		 RGD PMID:22575960 PMID:24209618 PMID:24284625 PMID:24316715 PMID:25456834 More... MGI:5527005 MGI:5621227 MGI:5621254 MGI:5927282 MGI:6094929 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
G Mettl8 methyltransferase like 8 involved_in ISO (PMID:28655767)
MGI:5903742 (MGI:5903638|PMID:28655767)		 RGD PMID:28655767 MGI:5903638 NCBI chr 3:55,731,453...55,863,652
Ensembl chr 3:55,770,167...55,863,676 		JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO (PMID:22395603), (PMID:28418038), (PMID:31358969)
(MGI:6368099|PMID:23871666)		 RGD PMID:22395603 PMID:23871666 PMID:28418038 PMID:31358969 MGI:6368099 NCBI chr 1:33,662,139...33,685,887
Ensembl chr 1:33,662,139...33,685,862 		JBrowse link
G Pcif1 phosphorylated CTD interacting factor 1 involved_in ISO (MGI:6368443|PMID:30487554)
(PMID:30467178), (PMID:30487554), (PMID:31279658), (PMID:31279659), (PMID:32814042), (PMID:33428944)		 RGD PMID:30467178 PMID:30487554 PMID:31279658 PMID:31279659 PMID:32814042 More... MGI:6368443 NCBI chr 3:153,614,147...153,627,079
Ensembl chr 3:153,614,147...153,627,079 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISS
ISO		 GO_REF:0000024
(PMID:29072297)		 UniProt
RGD		 PMID:29072297 GO_REF:0000024 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Trmt6 tRNA methyltransferase 6 involved_in ISO (PMID:29072297), (PMID:29107537) RGD PMID:29072297 PMID:29107537 NCBI chr 3:120,074,899...120,086,639
Ensembl chr 3:120,074,911...120,086,559 		JBrowse link
G Trmt61a tRNA methyltransferase 61A involved_in ISS
ISO		 GO_REF:0000024
(PMID:29072297), (PMID:29107537)		 UniProt
RGD		 PMID:29072297 PMID:29107537 GO_REF:0000024 NCBI chr 6:130,737,230...130,743,251
Ensembl chr 6:130,737,219...130,743,243 		JBrowse link
G Virma vir like m6A methyltransferase associated involved_in ISO
IBA		 (PMID:24981863), (PMID:29507755)
PMID:21873635		 RGD PMID:24981863 PMID:29507755 PMID:21873635 RGD:13792537 NCBI chr 5:24,961,208...25,024,660
Ensembl chr 5:24,960,778...25,023,341 		JBrowse link
G Wtap WT1 associated protein involved_in IBA
ISO		 PMID:21873635
(PMID:24316715), (PMID:24407421), (PMID:24981863)		 RGD PMID:24316715 PMID:24407421 PMID:24981863 PMID:21873635 RGD:13792537 NCBI chr 1:47,665,965...47,691,067
Ensembl chr 1:47,665,965...47,691,065 		JBrowse link
G Zc3h13 zinc finger CCCH type containing 13 involved_in ISO (PMID:29507755)
(MGI:6158697|PMID:29547716)		 RGD PMID:29507755 PMID:29547716 MGI:6158697 NCBI chr15:50,607,335...50,671,802
Ensembl chr15:50,607,380...50,671,802 		JBrowse link
mRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:11134005)
MGI:104663 (MGI:4943819|PMID:20541607)		 Ensembl
RGD		 PMID:11134005 PMID:20541607 GO_REF:0000107 MGI:4943819 NCBI chr 1:229,736,037...229,823,499
Ensembl chr 1:229,736,106...229,824,354 		JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 IDA RGD PMID:14660658 RGD:1358272 NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in
acts_upstream_of_or_within		 IDA
ISO		 (PMID:11134005)
MGI:2157186|MGI:2157378|MGI:3664540 (MGI:1340097|PMID:10403781), (MGI:2157316|PMID:8692961), (MGI:80219|PMID:8626621), (MGI:894899|PMID:9240444)		 RGD PMID:8626621 PMID:8692961 PMID:9240444 PMID:10403781 PMID:11134005 More... MGI:1340097 MGI:2157316 MGI:80219 MGI:894899, RGD:634661 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 acts_upstream_of_or_within ISO MGI:2157186 (MGI:80219|PMID:8626621) RGD PMID:8626621 MGI:80219 NCBI chr 9:12,564,955...12,578,461
Ensembl chr 9:12,564,920...12,578,458 		JBrowse link
G Dnajb11 DnaJ heat shock protein family (Hsp40) member B11 acts_upstream_of_or_within ISO (MGI:2154591|PMID:11584023) RGD PMID:11584023 MGI:2154591 NCBI chr11:78,151,750...78,168,259
Ensembl chr11:78,150,429...78,180,407 		JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B involved_in ISO (PMID:11134005) RGD PMID:11134005 NCBI chr10:35,857,040...35,862,935
Ensembl chr10:35,857,041...35,863,344 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in ISO (PMID:11134005) RGD PMID:11134005 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515 		JBrowse link
mRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Pus1 pseudouridine synthase 1 involved_in ISO
IBA		 (PMID:31477916)
(PMID:31477916), (PMID:35051350)
PMID:21873635		 RGD PMID:31477916 PMID:35051350 PMID:21873635 RGD:13792537 NCBI chr12:45,880,364...45,889,196
Ensembl chr12:45,880,440...45,889,196 		JBrowse link
G Pus3 pseudouridine synthase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:33,910,461...33,918,716
Ensembl chr 8:33,911,357...33,918,714 		JBrowse link
G Pus7 pseudouridine synthase 7 involved_in ISO (PMID:28073919), (PMID:31477916)
(PMID:28073919), (PMID:31477916), (PMID:35051350)		 RGD PMID:28073919 PMID:31477916 PMID:35051350 NCBI chr 4:11,360,169...11,401,139
Ensembl chr 4:11,360,188...11,401,172 		JBrowse link
G Pus7l pseudouridine synthase 7 like involved_in ISO
IEA		 (PMID:35051350)
GO_REF:0000107		 RGD
Ensembl		 PMID:35051350 GO_REF:0000107 NCBI chr 7:125,659,507...125,706,582
Ensembl chr 7:125,659,507...125,682,333 		JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 involved_in ISO (PMID:31477916)
(PMID:31477916), (PMID:35051350)		 RGD PMID:31477916 PMID:35051350 NCBI chr 3:106,017,759...106,023,010
Ensembl chr 3:106,017,864...106,023,251 		JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO
IEA		 (PMID:35051350)
GO_REF:0000107		 RGD
Ensembl		 PMID:35051350 GO_REF:0000107 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:28073919), (PMID:31477916)
PMID:21873635		 UniProt
RGD		 PMID:28073919 PMID:31477916 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:256,513,418...256,554,549
Ensembl chr 1:256,515,562...256,552,814 		JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 involved_in ISO (PMID:31477916) RGD PMID:31477916 NCBI chr 3:13,049,220...13,059,836
Ensembl chr 3:13,033,745...13,059,930 		JBrowse link
negative regulation of mRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag4 BAG cochaperone 4 IMP RGD PMID:14559896 RGD:2325853 NCBI chr16:66,288,678...66,305,893
Ensembl chr16:66,288,678...66,308,663 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C IDA RGD PMID:9792439 RGD:10041038 NCBI chr15:24,779,593...24,809,213
Ensembl chr15:24,779,450...24,809,183 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein IMP RGD PMID:11134005 RGD:10059415 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515 		JBrowse link
oxidative RNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO
IBA		 (PMID:31188562)
PMID:21873635		 RGD PMID:31188562 PMID:21873635 RGD:13792537 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in ISS
ISO		 GO_REF:0000024
(PMID:24360279)		 UniProt
RGD		 PMID:24360279 GO_REF:0000024 NCBI chr10:102,041,131...102,047,182
Ensembl chr10:102,041,120...102,047,182 		JBrowse link
oxidative single-stranded RNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase involved_in ISO (PMID:26863196), (PMID:26863410) RGD PMID:26863196 PMID:26863410 NCBI chr 3:79,939,515...79,972,820
Ensembl chr 3:79,939,600...79,972,000 		JBrowse link
G Alkbh5 alkB homolog 5, RNA demethylase involved_in IBA
ISO
ISS		 PMID:21873635
(MGI:6111276|PMID:29279410)
(PMID:23177736), (PMID:24616105)
GO_REF:0000024		 RGD
UniProt		 PMID:23177736 PMID:24616105 PMID:29279410 PMID:21873635 GO_REF:0000024 MGI:6111276, RGD:13792537 NCBI chr10:45,344,888...45,366,331
Ensembl chr10:45,343,395...45,366,331 		JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISS
IEA
ISO
IBA		 GO_REF:0000024
GO_REF:0000107
(MGI:3817348|PMID:18775698)
(PMID:18775698), (PMID:22002720), (PMID:25452335), (PMID:26457839), (PMID:26458103), (PMID:28002401), (PMID:30197295)
PMID:21873635		 UniProt
Ensembl
RGD		 PMID:18775698 PMID:22002720 PMID:25452335 PMID:26457839 PMID:26458103 More... GO_REF:0000024 GO_REF:0000107 MGI:3817348, RGD:13792537 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083 		JBrowse link
positive regulation of mRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IDA RGD PMID:9792439 RGD:10041038 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:22,837,586...22,868,293
Ensembl chr16:22,837,588...22,868,293 		JBrowse link
G Pus7 pseudouridine synthase 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:11,360,169...11,401,139
Ensembl chr 4:11,360,188...11,401,172 		JBrowse link
G Pus7l pseudouridine synthase 7 like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:125,659,507...125,706,582
Ensembl chr 7:125,659,507...125,682,333 		JBrowse link
RNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl1 methyltransferase like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:62,864,816...62,869,202
Ensembl chr 7:62,864,853...62,869,202 		JBrowse link
RNA 5'-cap (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ramac RNA guanine-7 methyltransferase activating subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:135,708,529...135,714,417
Ensembl chr 1:135,708,535...135,722,151 		JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr18:61,886,230...61,909,775
Ensembl chr18:61,886,292...61,909,775 		JBrowse link
RNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO (PMID:23063121)
(PMID:33664453)		 RGD PMID:23063121 PMID:33664453 NCBI chr 7:130,605,540...130,610,134
Ensembl chr 7:130,605,541...130,610,115 		JBrowse link
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:14,243,684...14,256,555
Ensembl chr  X:14,244,050...14,252,030 		JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in ISO
IBA
ISS		 (PMID:30626973)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:30626973 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397 		JBrowse link
G Henmt1 HEN methyltransferase 1 involved_in ISO
IEA
ISS		 (PMID:11283698)
GO_REF:0000117
(MGI:4947214|PMID:17652135)
GO_REF:0000024		 RGD
UniProt		 PMID:11283698 PMID:17652135 GO_REF:0000024 GO_REF:0000117 MGI:4947214 NCBI chr 2:196,585,732...196,603,700
Ensembl chr 2:196,586,797...196,599,738 		JBrowse link
G Mepce methylphosphate capping enzyme involved_in ISO (PMID:17643375), (PMID:19906723), (PMID:24360279), (PMID:28431135), (PMID:30559425) RGD PMID:17643375 PMID:19906723 PMID:24360279 PMID:28431135 PMID:30559425 NCBI chr12:18,911,796...18,916,515
Ensembl chr12:18,911,796...18,916,514 		JBrowse link
G Mettl14 methyltransferase like 14 involved_in ISO (MGI:6103038|PMID:28914256) RGD PMID:28914256 MGI:6103038 NCBI chr 2:211,530,598...211,546,858
Ensembl chr 2:211,530,602...211,546,821 		JBrowse link
G Mettl16 methyltransferase like 16 involved_in ISO (MGI:6114846|PMID:29262316) RGD PMID:29262316 MGI:6114846 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Mettl3 methyltransferase-like 3 involved_in ISO (PMID:9409616)
(MGI:6095345|PMID:28637692), (MGI:6103038|PMID:28914256), (MGI:6103202|PMID:28809392)		 RGD PMID:9409616 PMID:28637692 PMID:28809392 PMID:28914256 MGI:6095345 MGI:6103038 MGI:6103202 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
G Mettl4 methyltransferase like 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749 		JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459 		JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:33,662,139...33,685,887
Ensembl chr 1:33,662,139...33,685,862 		JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:129,511,224...129,532,498
Ensembl chr 5:129,512,307...129,532,423 		JBrowse link
G Nsun5 NOP2/Sun RNA methyltransferase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:21,293,637...21,299,319
Ensembl chr12:21,293,645...21,299,272 		JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:77,912,374...77,955,694
Ensembl chr17:77,912,377...77,950,006 		JBrowse link
G Rbm15 RNA binding motif protein 15 involved_in ISO (PMID:27602518) RGD PMID:27602518 NCBI chr 2:194,945,717...194,954,523
Ensembl chr 2:194,945,974...194,954,703 		JBrowse link
G Rbm15b RNA binding motif protein 15B involved_in ISO (PMID:27602518) RGD PMID:27602518 NCBI chr 8:107,543,542...107,548,195
Ensembl chr 8:107,525,898...107,551,696 		JBrowse link
G Trmt11 tRNA methyltransferase 11 homolog involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 1:27,054,437...27,109,765
Ensembl chr 1:27,054,420...27,201,610 		JBrowse link
rRNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor involved_in ISO
IBA		 (PMID:25851604)
PMID:21873635		 RGD PMID:25851604 PMID:21873635 RGD:13792537 NCBI chr12:21,629,551...21,640,758
Ensembl chr12:21,629,536...21,640,751 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:25851604) RGD PMID:25851604 NCBI chr 1:204,103,298...204,104,151 JBrowse link
rRNA 2'-O-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrm1 mitochondrial rRNA methyltransferase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:69,690,406...69,697,326
Ensembl chr10:69,690,421...69,696,709 		JBrowse link
G Mrm3 mitochondrial rRNA methyltransferase 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:61,095,920...61,125,421
Ensembl chr10:61,095,952...61,102,630 		JBrowse link
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nat10 N-acetyltransferase 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:90,111,643...90,151,644
Ensembl chr 3:90,111,645...90,149,927 		JBrowse link
rRNA base methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emg1 EMG1 N1-specific pseudouridine methyltransferase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,509,258...157,517,540
Ensembl chr 4:157,509,277...157,517,540 		JBrowse link
G Fdxacb1 ferredoxin-fold anticodon binding domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:51,111,831...51,118,253
Ensembl chr 8:51,113,397...51,118,308 		JBrowse link
G Mettl15 methyltransferase like 15 involved_in ISO
IBA		 (PMID:31665743), (PMID:32371392)
PMID:21873635		 RGD PMID:31665743 PMID:32371392 PMID:21873635 RGD:13792537 NCBI chr 3:95,586,855...95,764,392
Ensembl chr 3:95,586,850...95,764,397 		JBrowse link
G Mettl16 methyltransferase like 16 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459 		JBrowse link
G Nsun5 NOP2/Sun RNA methyltransferase 5 involved_in ISO
IBA		 (PMID:31428936), (PMID:31722427)
PMID:21873635
(MGI:6414744|PMID:31722427)		 RGD PMID:31428936 PMID:31722427 PMID:21873635 MGI:6414744, RGD:13792537 NCBI chr12:21,293,637...21,299,319
Ensembl chr12:21,293,645...21,299,272 		JBrowse link
rRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dimt1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in ISO
IBA		 (PMID:25851604)
PMID:21873635		 RGD PMID:25851604 PMID:21873635 RGD:13792537 NCBI chr 2:38,343,086...38,366,760
Ensembl chr 2:38,354,854...38,368,227 		JBrowse link
G Fbl fibrillarin involved_in ISO
ISS
IBA		 (PMID:30540930)
GO_REF:0000024
PMID:21873635		 RGD
UniProt		 PMID:30540930 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932 		JBrowse link
G Fbll1 fibrillarin-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299 		JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397 		JBrowse link
G Mettl5 methyltransferase like 5 involved_in ISO
IBA		 (PMID:31328227), (PMID:32217665), (PMID:33357433), (PMID:33428944)
(MGI:6505165|PMID:32783360), (MGI:6884948|PMID:35033535)
(PMID:31328227), (PMID:32217665), (PMID:33357433), (PMID:33428944), (PMID:35033535)
PMID:21873635		 RGD PMID:31328227 PMID:32217665 PMID:32783360 PMID:33357433 PMID:33428944 More... MGI:6505165 MGI:6884948, RGD:13792537 NCBI chr 3:54,625,790...54,638,066
Ensembl chr 3:54,625,793...54,638,039 		JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118 		JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in IBA
ISO		 PMID:21873635
(MGI:5573024|PMID:24516400)
(PMID:23022348)		 RGD PMID:23022348 PMID:24516400 PMID:21873635 MGI:5573024, RGD:13792537 NCBI chr 5:129,511,224...129,532,498
Ensembl chr 5:129,512,307...129,532,423 		JBrowse link
G Tfb1m transcription factor B1, mitochondrial involved_in IBA
IEA		 PMID:21873635
GO_REF:0000104		 UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 1:44,115,240...44,161,737
Ensembl chr 1:44,119,166...44,161,709 		JBrowse link
G Tfb2m transcription factor B2, mitochondrial involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:91,278,889...91,296,709
Ensembl chr13:91,278,898...91,296,657 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:31328227)
(PMID:31328227), (PMID:35033535)		 RGD PMID:31328227 PMID:35033535 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Trmt2b tRNA methyltransferase 2 homolog B acts_upstream_of_or_within ISO (MGI:6714531|PMID:31736397) RGD PMID:31736397 MGI:6714531 NCBI chr  X:97,425,712...97,483,821 JBrowse link
G Zcchc4 zinc finger CCHC-type containing 4 involved_in IEA
ISS
ISO
IBA		 GO_REF:0000002
GO_REF:0000024
(PMID:30531910), (PMID:31328227), (PMID:31695039), (PMID:31799605)
PMID:21873635		 InterPro
UniProt
RGD		 PMID:30531910 PMID:31328227 PMID:31695039 PMID:31799605 PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:13792537 NCBI chr14:58,165,459...58,207,071
Ensembl chr14:58,165,460...58,206,743 		JBrowse link
rRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrm1 mitochondrial rRNA methyltransferase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:69,690,406...69,697,326
Ensembl chr10:69,690,421...69,696,709 		JBrowse link
rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:2446500|MGI:3849598|MGI:3849599 (MGI:3047190|PMID:15240872), (MGI:5499053|PMID:23726835)
PMID:21873635		 RGD PMID:15240872 PMID:23726835 PMID:21873635 MGI:3047190 MGI:5499053, RGD:13792537
G Nhp2 NHP2 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:35,877,015...35,880,409
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nop10 NOP10 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942 		JBrowse link
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 IDA RGD PMID:12446766 RGD:633420
G Gar1 GAR1 ribonucleoprotein involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:12446766 PMID:21873635 RGD:633420, RGD:13792537 NCBI chr 2:218,375,231...218,382,509
Ensembl chr 2:218,375,353...218,382,524 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein IDA RGD PMID:12446766 RGD:633420 NCBI chr10:35,877,015...35,880,409
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nop10 NOP10 ribonucleoprotein IDA RGD PMID:12446766 RGD:633420 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942 		JBrowse link
snRNA (adenine-N6)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl16 methyltransferase like 16 involved_in ISO (PMID:28525753), (PMID:29051200), (PMID:32266935) RGD PMID:28525753 PMID:29051200 PMID:32266935 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Mettl4 methyltransferase like 4 involved_in ISO (PMID:31913360) RGD PMID:31913360 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749 		JBrowse link
snRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mepce methylphosphate capping enzyme involved_in IBA
ISO		 PMID:21873635
(PMID:17643375), (PMID:19906723), (PMID:24360279), (PMID:30559425)		 RGD PMID:17643375 PMID:19906723 PMID:24360279 PMID:30559425 PMID:21873635 RGD:13792537 NCBI chr12:18,911,796...18,916,515
Ensembl chr12:18,911,796...18,916,514 		JBrowse link
snRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:35,877,015...35,880,409
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nop10 NOP10 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942 		JBrowse link
tRNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl1 methyltransferase like 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:62,864,816...62,869,202
Ensembl chr 7:62,864,853...62,869,202 		JBrowse link
G Wdr4 WD repeat domain 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:9,587,205...9,611,434
Ensembl chr20:9,587,207...9,603,581 		JBrowse link
tRNA acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nat10 N-acetyltransferase 10 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:90,111,643...90,151,644
Ensembl chr 3:90,111,645...90,149,927 		JBrowse link
tRNA C3-cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dalrd3 DALR anticodon binding domain containing 3 involved_in ISO
IBA		 (PMID:32427860)
PMID:21873635		 RGD PMID:32427860 PMID:21873635 RGD:13792537 NCBI chr 8:109,264,100...109,268,560
Ensembl chr 8:109,265,676...109,268,568 		JBrowse link
G Mettl8 methyltransferase like 8 involved_in ISO (PMID:34774131), (PMID:35017528) RGD PMID:34774131 PMID:35017528 NCBI chr 3:55,731,453...55,863,652
Ensembl chr 3:55,770,167...55,863,676 		JBrowse link
tRNA C5-cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:26160102) RGD PMID:26160102 NCBI chr17:77,912,374...77,955,694
Ensembl chr17:77,912,377...77,950,006 		JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:76,601,966...76,646,104
Ensembl chr17:76,610,543...76,645,439 		JBrowse link
tRNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27745969) RGD PMID:27745969 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759 		JBrowse link
tRNA dihydrouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dus1l dihydrouridine synthase 1-like involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000117
(PMID:34798057)		 UniProt
RGD		 PMID:34798057 GO_REF:0000024 GO_REF:0000117 NCBI chr10:106,055,519...106,062,656
Ensembl chr10:106,055,519...106,062,781 		JBrowse link
G Dus2 dihydrouridine synthase 2 involved_in IBA
ISO		 PMID:21873635
(PMID:26429968), (PMID:34798057)		 RGD PMID:26429968 PMID:34798057 PMID:21873635 RGD:13792537 NCBI chr19:33,906,517...33,954,922
Ensembl chr19:33,911,750...33,954,709 		JBrowse link
G Dus3l dihydrouridine synthase 3-like involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000117
(PMID:34556860), (PMID:34798057)		 UniProt
RGD		 PMID:34556860 PMID:34798057 GO_REF:0000024 GO_REF:0000117 NCBI chr 9:1,593,491...1,598,663
Ensembl chr 9:1,594,123...1,598,655 		JBrowse link
G Dus4l dihydrouridine synthase 4-like involved_in ISO (PMID:34798057) RGD PMID:34798057 NCBI chr 6:48,228,111...48,242,553
Ensembl chr 6:48,228,111...48,242,449 		JBrowse link
tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh8 alkB homolog 8, tRNA methyltransferase involved_in ISO (PMID:20308323), (PMID:31079898)
(MGI:4461096|PMID:20123966)		 RGD PMID:20123966 PMID:20308323 PMID:31079898 MGI:4461096 NCBI chr 6:378,779...449,382
Ensembl chr 6:378,100...452,165 		JBrowse link
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO
ISS		 (PMID:28119416), (PMID:31919512)
GO_REF:0000024		 RGD
UniProt		 PMID:28119416 PMID:31919512 GO_REF:0000024 NCBI chr 7:130,605,540...130,610,134
Ensembl chr 7:130,605,541...130,610,115 		JBrowse link
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:14,243,684...14,256,555
Ensembl chr  X:14,244,050...14,252,030 		JBrowse link
G Gtpbp3 GTP binding protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,175,766...18,180,857
Ensembl chr16:18,175,766...18,180,857 		JBrowse link
G Lcmt2 leucine carboxyl methyltransferase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:108,099,960...108,102,084
Ensembl chr 3:108,099,961...108,102,084 		JBrowse link
G Mettl1 methyltransferase like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:62,864,816...62,869,202
Ensembl chr 7:62,864,853...62,869,202 		JBrowse link
G Mettl2 methyltransferase like 2 involved_in ISO (PMID:28655767)
(PMID:28655767), (PMID:34268557)
MGI:5903740 (MGI:5903638|PMID:28655767)		 RGD PMID:28655767 PMID:34268557 MGI:5903638 NCBI chr10:90,095,527...90,109,354
Ensembl chr10:90,095,527...90,119,528 		JBrowse link
G Mettl6 methyltransferase like 6 involved_in ISO (PMID:28655767)
(PMID:32923617), (PMID:34268557), (PMID:34862464), (PMID:34922197)
MGI:5903741 (MGI:5903638|PMID:28655767)		 RGD PMID:28655767 PMID:32923617 PMID:34268557 PMID:34862464 PMID:34922197 MGI:5903638 NCBI chr16:6,683,820...6,699,013
Ensembl chr16:6,583,465...6,698,975 		JBrowse link
G Mettl8 methyltransferase like 8 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:55,731,453...55,863,652
Ensembl chr 3:55,770,167...55,863,676 		JBrowse link
G Mto1 mitochondrial tRNA translation optimization 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:79,309,681...79,335,231
Ensembl chr 8:79,309,982...79,335,231 		JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in IBA
ISO		 PMID:21873635
(MGI:5304206|PMID:22144916), (MGI:6194005|PMID:22885326), (MGI:6368097|PMID:31287866), (MGI:6368099|PMID:23871666), (MGI:6368109|PMID:31276587)
(PMID:17071714), (PMID:31287866)		 RGD PMID:17071714 PMID:22144916 PMID:22885326 PMID:23871666 PMID:31276587 More... MGI:5304206 MGI:6194005 MGI:6368097 MGI:6368099 MGI:6368109, RGD:13792537 NCBI chr 1:33,662,139...33,685,887
Ensembl chr 1:33,662,139...33,685,862 		JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:28531330) RGD PMID:28531330 NCBI chr17:77,912,374...77,955,694
Ensembl chr17:77,912,377...77,950,006 		JBrowse link
G Tarbp1 TAR (HIV-1) RNA binding protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:54,398,268...54,449,293
Ensembl chr19:54,398,253...54,449,261 		JBrowse link
G Thada THADA, armadillo repeat containing involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:10,183,942...10,488,007
Ensembl chr 6:10,183,982...10,487,159 		JBrowse link
G Thumpd2 THUMP domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:13,924,742...13,976,657
Ensembl chr 6:13,924,765...13,976,657 		JBrowse link
G Thumpd3 THUMP domain containing 3 involved_in ISO
IBA		 (PMID:34669960)
PMID:21873635		 RGD PMID:34669960 PMID:21873635 RGD:13792537 NCBI chr 4:146,185,422...146,209,802
Ensembl chr 4:146,185,503...146,211,246 		JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 involved_in
acts_upstream_of_or_within		 ISO
ISS		 (MGI:6194005|PMID:22885326)
GO_REF:0000024
(PMID:16424344)
MGI:3695409 (MGI:3612372|PMID:16424344)		 RGD
UniProt		 PMID:16424344 PMID:22885326 GO_REF:0000024 MGI:3612372 MGI:6194005 NCBI chr17:76,601,966...76,646,104
Ensembl chr17:76,610,543...76,645,439 		JBrowse link
G Trmo tRNA methyltransferase O involved_in ISS
ISO		 GO_REF:0000024
(PMID:25063302)		 UniProt
RGD		 PMID:25063302 GO_REF:0000024 NCBI chr 5:60,663,106...60,676,423
Ensembl chr 5:60,667,864...60,676,423 		JBrowse link
G Trmt10a tRNA methyltransferase 10A involved_in ISO
ISS		 (PMID:25053765)
GO_REF:0000024		 RGD
UniProt		 PMID:25053765 GO_REF:0000024 NCBI chr 2:226,669,445...226,684,166
Ensembl chr 2:226,669,832...226,684,151 		JBrowse link
G Trmt11 tRNA methyltransferase 11 homolog involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:27,054,437...27,109,765
Ensembl chr 1:27,054,420...27,201,610 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:34669960) RGD PMID:34669960 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Trmt12 tRNA methyltransferase 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:90,417,846...90,419,472
Ensembl chr 7:90,417,862...90,419,867 		JBrowse link
G Trmt13 tRNA methyltransferase 13 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:204,533,630...204,547,711
Ensembl chr 2:204,533,632...204,546,843 		JBrowse link
G Trmt2a tRNA methyltransferase 2 homolog A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:82,737,689...82,742,423
Ensembl chr11:82,737,689...82,742,336 		JBrowse link
G Trmt44 tRNA methyltransferase 44 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:75,175,331...75,204,291
Ensembl chr14:75,182,029...75,200,147 		JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:91,963,558...91,987,660
Ensembl chr 6:91,943,724...91,987,555 		JBrowse link
G Trmt6 tRNA methyltransferase 6 involved_in ISO
IEA		 (PMID:16043508)
GO_REF:0000107		 RGD
Ensembl		 PMID:16043508 GO_REF:0000107 NCBI chr 3:120,074,899...120,086,639
Ensembl chr 3:120,074,911...120,086,559 		JBrowse link
G Trmt61a tRNA methyltransferase 61A involved_in IBA
ISO		 PMID:21873635
(PMID:16043508)		 RGD PMID:16043508 PMID:21873635 RGD:13792537 NCBI chr 6:130,737,230...130,743,251
Ensembl chr 6:130,737,219...130,743,243 		JBrowse link
G Trmt9b tRNA methyltransferase 9B (putative) involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:55,740,551...55,792,198
Ensembl chr16:55,743,018...55,792,144 		JBrowse link
G Tyw3 tRNA-yW synthesizing protein 3 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,529,921...243,552,043
Ensembl chr 2:243,529,946...243,552,039 		JBrowse link
G Wdr6 WD repeat domain 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:109,268,079...109,274,504
Ensembl chr 8:109,268,079...109,274,499 		JBrowse link
tRNA methylthiolation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000108
MGI:5750452 (MGI:5635958|PMID:25738458)		 GOC
RGD		 PMID:25738458 GO_REF:0000108 MGI:5635958 NCBI chr 3:142,838,081...142,872,669
Ensembl chr 3:142,708,028...142,872,677 		JBrowse link
G Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:5301443 (MGI:5297757|PMID:21841312)		 RGD PMID:21841312 PMID:21873635 MGI:5297757, RGD:13792537 NCBI chr17:34,718,680...34,769,614
NCBI chr17:34,852,238...35,271,276
Ensembl chr17:34,718,687...35,407,524 		JBrowse link
G LOC120093069 threonylcarbamoyladenosine tRNA methylthiotransferase-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:34,852,238...35,271,276
Ensembl chr17:34,718,687...35,407,524 		JBrowse link
tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005618.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Aars1 alanyl-tRNA synthetase 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IBA		 GO_REF:0000024
(MGI:3640843|PMID:16906134)
(MGI:5609717|PMID:25422440), (MGI:6159204|PMID:29769718)
PMID:21873635		 UniProt
RGD		 PMID:16906134 PMID:25422440 PMID:29769718 PMID:21873635 GO_REF:0000024 MGI:3640843 MGI:5609717 MGI:6159204, RGD:13792537 NCBI chr19:38,999,130...39,021,152
Ensembl chr19:38,999,163...39,021,147 		JBrowse link
G Aars2 alanyl-tRNA synthetase 2, mitochondrial involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:15,484,639...15,496,116
Ensembl chr 9:15,297,531...15,496,090 		JBrowse link
G Ankrd16 ankyrin repeat domain 16 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6159204|PMID:29769718)		 UniProt
RGD		 PMID:29769718 GO_REF:0000024 MGI:6159204 NCBI chr17:66,735,325...66,748,533
Ensembl chr17:66,737,261...66,748,533 		JBrowse link
G Dtwd1 DTW domain containing 1 involved_in IBA
ISO
ISS		 PMID:21873635
(PMID:31804502)
GO_REF:0000024		 RGD
UniProt		 PMID:31804502 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:113,392,402...113,409,322
Ensembl chr 3:113,392,457...113,408,105 		JBrowse link
G Dtwd2 DTW domain containing 2 involved_in ISO (PMID:31804502) RGD PMID:31804502 NCBI chr18:42,811,783...42,902,040
Ensembl chr18:42,816,681...42,901,832 		JBrowse link
G Elp5 elongator acetyltransferase complex subunit 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:54,692,526...54,704,255
Ensembl chr10:54,692,530...54,704,923 		JBrowse link
G Mettl1 methyltransferase like 1 involved_in ISO (PMID:12403464), (PMID:15861136) RGD PMID:12403464 PMID:15861136 NCBI chr 7:62,864,816...62,869,202
Ensembl chr 7:62,864,853...62,869,202 		JBrowse link
G RGD1311345 similar to CG9752-PA involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:6,281,377...6,288,976
Ensembl chr17:6,281,400...6,288,975 		JBrowse link
G Thg1l tRNA-histidine guanylyltransferase 1-like involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:30,387,929...30,396,579
Ensembl chr10:30,387,940...30,396,687 		JBrowse link
G Thumpd1 THUMP domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:174,078,875...174,084,915
Ensembl chr 1:174,078,878...174,084,937 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO
IBA		 (PMID:24126054)
PMID:21873635
(MGI:5476410|PMID:23289710)		 RGD PMID:23289710 PMID:24126054 PMID:21873635 MGI:5476410, RGD:13792537 NCBI chr 5:135,293,472...135,341,522
Ensembl chr 5:135,295,330...135,338,764 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 involved_in IBA
ISO
ISS		 PMID:21873635
(PMID:32926445)
GO_REF:0000024		 RGD
UniProt		 PMID:32926445 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:256,513,418...256,554,549
Ensembl chr 1:256,515,562...256,552,814 		JBrowse link
G Wdr4 WD repeat domain 4 involved_in ISO (PMID:15861136) RGD PMID:15861136 NCBI chr20:9,587,205...9,611,434
Ensembl chr20:9,587,207...9,603,581 		JBrowse link
tRNA N1-guanine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10a tRNA methyltransferase 10A involved_in ISO
IBA
IEA		 (PMID:32392304)
PMID:21873635
GO_REF:0000107		 RGD
Ensembl		 PMID:32392304 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:226,669,445...226,684,166
Ensembl chr 2:226,669,832...226,684,151 		JBrowse link
G Trmt10b tRNA methyltransferase 10B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:59,548,845...59,572,529
Ensembl chr 5:59,548,869...59,572,526 		JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:91,963,558...91,987,660
Ensembl chr 6:91,943,724...91,987,555 		JBrowse link
tRNA N2-guanine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thumpd3 THUMP domain containing 3 involved_in ISO (PMID:34669960) RGD PMID:34669960 NCBI chr 4:146,185,422...146,209,802
Ensembl chr 4:146,185,503...146,211,246 		JBrowse link
G Trmt1 tRNA methyltransferase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:23,456,756...23,471,581
Ensembl chr19:23,456,756...23,466,956 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:34669960) RGD PMID:34669960 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Trmt1l tRNA methyltransferase 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:63,510,097...63,543,268
Ensembl chr13:63,510,204...63,543,266 		JBrowse link
tRNA nucleoside ribose methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr  X:14,243,684...14,256,555
Ensembl chr  X:14,244,050...14,252,030 		JBrowse link
tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus1 pseudouridine synthase 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
(MGI:1928672|PMID:10094309), (MGI:5810940|PMID:27197761)
(PMID:15772074)
(MGI:1928307|PMID:11085940), (MGI:2672074|PMID:11027153), (MGI:3053242|PMID:15327771)		 RGD PMID:10094309 PMID:11027153 PMID:11085940 PMID:15327771 PMID:15772074 More... MGI:1928307 MGI:1928672 MGI:2672074 MGI:3053242 MGI:5810940, RGD:13792537 NCBI chr12:45,880,364...45,889,196
Ensembl chr12:45,880,440...45,889,196 		JBrowse link
G Pus10 pseudouridine synthase 10 involved_in ISO
IBA		 (PMID:30530625), (PMID:31819270)
PMID:21873635		 RGD PMID:30530625 PMID:31819270 PMID:21873635 RGD:13792537 NCBI chr14:97,621,228...97,684,059
Ensembl chr14:97,621,391...97,684,046 		JBrowse link
G Pus3 pseudouridine synthase 3 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:27055666)
(MGI:2672074|PMID:11027153)
PMID:21873635		 RGD PMID:11027153 PMID:27055666 PMID:21873635 MGI:2672074, RGD:13792537 NCBI chr 8:33,910,461...33,918,716
Ensembl chr 8:33,911,357...33,918,714 		JBrowse link
G Pus7 pseudouridine synthase 7 involved_in ISO (PMID:29628141)
(PMID:29628141), (PMID:34718722)		 RGD PMID:29628141 PMID:34718722 NCBI chr 4:11,360,169...11,401,139
Ensembl chr 4:11,360,188...11,401,172 		JBrowse link
G Pusl1 pseudouridine synthase like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:166,496,755...166,500,611
Ensembl chr 5:166,496,755...166,500,611 		JBrowse link
tRNA thio-modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctu1 cytosolic thiouridylase subunit 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:94,115,431...94,121,224
Ensembl chr 1:94,115,420...94,121,221 		JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 involved_in IEA
ISS		 GO_REF:0000104
GO_REF:0000024		 UniProt GO_REF:0000024 GO_REF:0000104 NCBI chr19:50,539,184...50,544,629
Ensembl chr19:50,539,352...50,544,623 		JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 involved_in ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:156,939,763...156,941,723
Ensembl chr 3:156,939,809...156,941,890 		JBrowse link
G Urm1 ubiquitin related modifier 1 involved_in ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:13,100,340...13,117,064
Ensembl chr 3:13,092,200...13,117,642
Ensembl chr 3:13,092,200...13,117,642 		JBrowse link
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gon7 GON7 subunit of KEOPS complex involved_in ISO (PMID:31481669) RGD PMID:31481669 NCBI chr 6:121,882,565...121,898,452
Ensembl chr 6:121,885,694...121,898,643 		JBrowse link
G Osgep O-sialoglycoprotein endopeptidase involved_in ISS
ISO		 GO_REF:0000024
(PMID:28805828), (PMID:31481669)		 UniProt
RGD		 PMID:28805828 PMID:31481669 GO_REF:0000024 NCBI chr15:24,137,149...24,144,568
Ensembl chr15:24,137,153...24,144,568 		JBrowse link
G Osgepl1 O-sialoglycoprotein endopeptidase-like 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:29760464), (PMID:32047918)		 UniProt
RGD		 PMID:29760464 PMID:32047918 GO_REF:0000024 NCBI chr 9:48,214,995...48,229,440
Ensembl chr 9:48,215,402...48,229,388 		JBrowse link
G Tprkb Tp53rk binding protein involved_in ISO
ISS
IBA		 (PMID:28805828)
GO_REF:0000024
PMID:21873635		 RGD
UniProt		 PMID:28805828 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:118,342,910...118,357,908
Ensembl chr 4:118,342,945...118,357,901 		JBrowse link
G Yrdc yrdC N(6)-threonylcarbamoyltransferase domain containing involved_in ISS
ISO		 GO_REF:0000024
(PMID:29760464), (PMID:31481669), (PMID:34545459)		 UniProt
RGD		 PMID:29760464 PMID:31481669 PMID:34545459 GO_REF:0000024 NCBI chr 5:137,110,244...137,115,127
Ensembl chr 5:137,110,279...137,115,120 		JBrowse link
tRNA wobble adenosine to inosine editing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adat2 adenosine deaminase, tRNA-specific 2 involved_in IBA
IEA		 PMID:21873635
GO_REF:0000002		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 1:7,954,520...7,975,254
Ensembl chr 1:7,954,631...7,975,251 		JBrowse link
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elp1 elongator acetyltransferase complex subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:71,453,338...71,505,833
Ensembl chr 5:71,456,310...71,505,762 		JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:39,754,635...39,816,482
Ensembl chr15:39,754,632...39,816,445 		JBrowse link
tRNA wobble base cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun3 NOP2/Sun RNA methyltransferase 3 involved_in ISO (PMID:27214402), (PMID:27356879), (PMID:27497299) RGD PMID:27214402 PMID:27356879 PMID:27497299 NCBI chr11:37,490,832...37,575,607
Ensembl chr11:37,490,838...37,568,543 		JBrowse link
tRNA wobble cytosine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27497299) RGD PMID:27497299 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759 		JBrowse link
tRNA wobble position uridine thiolation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctu1 cytosolic thiouridylase subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:94,115,431...94,121,224
Ensembl chr 1:94,115,420...94,121,221 		JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:50,539,184...50,544,629
Ensembl chr19:50,539,352...50,544,623 		JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:156,939,763...156,941,723
Ensembl chr 3:156,939,809...156,941,890 		JBrowse link
G Trmu tRNA mitochondrial 2-thiouridylase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:116,969,750...116,987,704
Ensembl chr 7:116,969,756...116,986,355 		JBrowse link
tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh8 alkB homolog 8, tRNA methyltransferase involved_in ISO (PMID:21285950), (PMID:31079898)
(MGI:5607402|PMID:20583019)		 RGD PMID:20583019 PMID:21285950 PMID:31079898 MGI:5607402 NCBI chr 6:378,779...449,382
Ensembl chr 6:378,100...452,165 		JBrowse link
G Ctu1 cytosolic thiouridylase subunit 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:94,115,431...94,121,224
Ensembl chr 1:94,115,420...94,121,221 		JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 involved_in ISS
IEA		 GO_REF:0000024
GO_REF:0000104		 UniProt GO_REF:0000024 GO_REF:0000104 NCBI chr19:50,539,184...50,544,629
Ensembl chr19:50,539,352...50,544,623 		JBrowse link
G Elp1 elongator acetyltransferase complex subunit 1 involved_in ISO
IEA		 (MGI:5506828|PMID:23717213)
GO_REF:0000107		 RGD
Ensembl		 PMID:23717213 GO_REF:0000107 MGI:5506828 NCBI chr 5:71,453,338...71,505,833
Ensembl chr 5:71,456,310...71,505,762 		JBrowse link
G Elp2 elongator acetyltransferase complex subunit 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:15,885,940...15,921,564
Ensembl chr18:15,885,934...15,921,599 		JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 involved_in ISO (PMID:29415125) RGD PMID:29415125 NCBI chr15:39,754,635...39,816,482
Ensembl chr15:39,754,632...39,816,445 		JBrowse link
G Elp4 elongator acetyltransferase complex subunit 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:92,162,271...92,385,251
Ensembl chr 3:92,162,280...92,385,243 		JBrowse link
G Elp5 elongator acetyltransferase complex subunit 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:54,692,526...54,704,255
Ensembl chr10:54,692,530...54,704,923 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:110,280,059...110,295,070
Ensembl chr 8:110,279,979...110,295,067 		JBrowse link
G Gtpbp3 GTP binding protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,175,766...18,180,857
Ensembl chr16:18,175,766...18,180,857 		JBrowse link
G Kti12 KTI12 chromatin associated involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:123,601,059...123,602,581
Ensembl chr 5:123,599,436...123,613,964 		JBrowse link
G LOC365839 similar to elongation protein 4 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:172,729,315...172,730,773
Ensembl chr 2:172,728,560...172,730,748 		JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 involved_in ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:156,939,763...156,941,723
Ensembl chr 3:156,939,809...156,941,890 		JBrowse link
G Mto1 mitochondrial tRNA translation optimization 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
SGD:S000003205 (MGI:2677576|PMID:14522080)		 RGD PMID:14522080 PMID:21873635 MGI:2677576, RGD:13792537 NCBI chr 8:79,309,681...79,335,231
Ensembl chr 8:79,309,982...79,335,231 		JBrowse link
G Trmt9b tRNA methyltransferase 9B (putative) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:55,740,551...55,792,198
Ensembl chr16:55,743,018...55,792,144 		JBrowse link
G Urm1 ubiquitin related modifier 1 involved_in ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:13,100,340...13,117,064
Ensembl chr 3:13,092,200...13,117,642
Ensembl chr 3:13,092,200...13,117,642 		JBrowse link
tRNA-guanine transglycosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 involved_in ISO
IEA
IBA		 (PMID:20354154)
GO_REF:0000117
PMID:21873635
(MGI:3850292|PMID:19414587)		 RGD
UniProt		 PMID:19414587 PMID:20354154 PMID:21873635 GO_REF:0000117 MGI:3850292, RGD:13792537 NCBI chr 8:19,965,801...19,973,843
Ensembl chr 8:19,966,336...19,973,837 		JBrowse link
G Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 involved_in IBA
ISO		 PMID:21873635
(MGI:3850292|PMID:19414587)
(PMID:20354154)		 RGD PMID:19414587 PMID:20354154 PMID:21873635 MGI:3850292, RGD:13792537 NCBI chr11:56,806,417...56,837,239
Ensembl chr11:56,806,385...56,837,228 		JBrowse link
G RGD1311345 similar to CG9752-PA involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:6,281,377...6,288,976
Ensembl chr17:6,281,400...6,288,975 		JBrowse link
U6 2'-O-snRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:6400674|PMID:32017896)
(PMID:32017898)		 UniProt
Ensembl
RGD		 PMID:32017896 PMID:32017898 GO_REF:0000024 GO_REF:0000107 MGI:6400674 NCBI chr 2:215,997,641...216,012,833
Ensembl chr 2:215,997,649...216,012,865 		JBrowse link
wybutosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lcmt2 leucine carboxyl methyltransferase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:108,099,960...108,102,084
Ensembl chr 3:108,099,961...108,102,084 		JBrowse link
G Tyw1 tRNA-yW synthesizing protein 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:26,332,020...26,418,286
Ensembl chr12:26,330,351...26,418,208 		JBrowse link
G Tyw5 tRNA-yW synthesizing protein 5 involved_in IBA
ISO		 PMID:21873635
(PMID:20739293), (PMID:20972222)		 RGD PMID:20739293 PMID:20972222 PMID:21873635 RGD:13792537 NCBI chr 9:58,961,100...58,979,188
Ensembl chr 9:58,961,106...58,979,188 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18734
    metabolic process 11458
      organic substance metabolic process 11020
        macromolecule metabolic process 9466
          macromolecule modification 3829
            RNA modification 159
              RNA acetylation + 1
              RNA methylation + 77
              RNA nucleotide deletion + 0
              RNA nucleotide insertion + 0
              base conversion or substitution editing + 14
              chloroplast RNA modification + 0
              mRNA modification + 33
              mitochondrial RNA modification + 7
              oxidative RNA demethylation + 5
              pseudouridine synthesis + 18
              rRNA modification + 31
              snRNA modification + 7
              tRNA modification + 89
Path 2
Term Annotations click to browse term
  biological_process 18734
    metabolic process 11458
      cellular metabolic process 9697
        cellular aromatic compound metabolic process 5556
          nucleobase-containing compound metabolic process 5335
            nucleic acid metabolic process 4844
              RNA metabolic process 4280
                RNA modification 159
                  RNA acetylation + 1
                  RNA methylation + 77
                  RNA nucleotide deletion + 0
                  RNA nucleotide insertion + 0
                  base conversion or substitution editing + 14
                  chloroplast RNA modification + 0
                  mRNA modification + 33
                  mitochondrial RNA modification + 7
                  oxidative RNA demethylation + 5
                  pseudouridine synthesis + 18
                  rRNA modification + 31
                  snRNA modification + 7
                  tRNA modification + 89
paths to the root