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ONTOLOGY REPORT - ANNOTATIONS


Term:putrescine biosynthetic process
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Accession:GO:0009446 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane; putrescine can be synthesized from arginine or ornithine and is the metabolic precursor of spermidine and spermine.
Synonyms:exact_synonym: putrescine anabolism;   putrescine biosynthesis;   putrescine formation;   putrescine synthesis


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putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Odc1 ornithine decarboxylase 1 IDA RGD PMID:10430362, PMID:1415709 RGD:1578320, RGD:7242912 NCBI chr 6:42,852,529...42,859,142
Ensembl chr 6:42,852,683...42,859,927
JBrowse link
G Paox polyamine oxidase involved_in ISO (PMID:16354669) RGD PMID:16354669 NCBI chr 1:212,578,444...212,603,722
Ensembl chr 1:212,578,450...212,603,529
JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatinase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:160,306,754...160,321,951
Ensembl chr 5:160,306,727...160,321,066
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin1 antizyme inhibitor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:77,345,646...77,372,398
Ensembl chr 7:77,345,646...77,372,398
JBrowse link
G Azin2 antizyme inhibitor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:147,120,128...147,148,576
Ensembl chr 5:147,120,129...147,148,291
JBrowse link
G Odc1 ornithine decarboxylase 1 involved_in IEA
IBA
ISS
ISO
GO_REF:0000041
PMID:21873635
GO_REF:0000024
(MGI:5574513|PMID:24967154)
UniProt
RGD
PMID:24967154, PMID:21873635, PMID:21873635 GO_REF:0000024 GO_REF:0000041 MGI:5574513, RGD:13792537, RGD:13792537 NCBI chr 6:42,852,529...42,859,142
Ensembl chr 6:42,852,683...42,859,927
JBrowse link
G RGD1562036 similar to ornithine decarboxylase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:148,432,213...148,444,188
Ensembl chr 5:148,433,086...148,444,188
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20078
    metabolic process 12140
      cellular metabolic process 11076
        cellular nitrogen compound metabolic process 6738
          cellular nitrogen compound biosynthetic process 5108
            amine biosynthetic process 41
              cellular biogenic amine biosynthetic process 41
                polyamine biosynthetic process 13
                  putrescine biosynthetic process 6
                    putrescine biosynthetic process from arginine + 1
                    putrescine biosynthetic process from ornithine 4
Path 2
Term Annotations click to browse term
  biological_process 20078
    metabolic process 12140
      organic substance metabolic process 11646
        organonitrogen compound metabolic process 7022
          amine metabolic process 123
            cellular amine metabolic process 115
              cellular biogenic amine metabolic process 102
                polyamine metabolic process 19
                  polyamine biosynthetic process 13
                    putrescine biosynthetic process 6
                      putrescine biosynthetic process from arginine + 1
                      putrescine biosynthetic process from ornithine 4
paths to the root