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ONTOLOGY REPORT - ANNOTATIONS


Term:putrescine biosynthetic process
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Accession:GO:0009446 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane; putrescine can be synthesized from arginine or ornithine and is the metabolic precursor of spermidine and spermine.
Synonyms:exact_synonym: putrescine anabolism;   putrescine biosynthesis;   putrescine formation;   putrescine synthesis


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putrescine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Odc1 ornithine decarboxylase 1 IDA RGD PMID:10430362, PMID:1415709 RGD:1578320, RGD:7242912 NCBI chr 6:42,852,529...42,859,142
Ensembl chr 6:42,852,683...42,859,927
JBrowse link
G Paox polyamine oxidase ISO (PMID:16354669) RGD PMID:16354669 NCBI chr 1:212,578,444...212,603,722
Ensembl chr 1:212,578,450...212,603,529
JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatinase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:160,306,754...160,321,951
Ensembl chr 5:160,306,727...160,321,066
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin1 antizyme inhibitor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:77,345,646...77,372,398
Ensembl chr 7:77,345,646...77,372,398
JBrowse link
G Azin2 antizyme inhibitor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:147,120,128...147,148,576
Ensembl chr 5:147,120,129...147,148,291
JBrowse link
G Odc1 ornithine decarboxylase 1 IEA
IBA
ISO
ISS
GO_REF:0000041
PMID:21873635
(MGI:5574513|PMID:24967154)
GO_REF:0000024
UniProt
RGD
PMID:24967154, PMID:21873635 GO_REF:0000024 GO_REF:0000041 MGI:5574513, RGD:13792537 NCBI chr 6:42,852,529...42,859,142
Ensembl chr 6:42,852,683...42,859,927
JBrowse link
G RGD1562036 similar to ornithine decarboxylase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:148,432,213...148,444,188
Ensembl chr 5:148,433,086...148,444,188
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20044
    metabolic process 12101
      cellular metabolic process 11040
        cellular nitrogen compound metabolic process 6722
          cellular nitrogen compound biosynthetic process 5099
            amine biosynthetic process 41
              cellular biogenic amine biosynthetic process 41
                polyamine biosynthetic process 13
                  putrescine biosynthetic process 6
                    putrescine biosynthetic process from arginine + 1
                    putrescine biosynthetic process from ornithine 4
Path 2
Term Annotations click to browse term
  biological_process 20044
    metabolic process 12101
      organic substance metabolic process 11622
        organonitrogen compound metabolic process 7014
          amine metabolic process 122
            cellular amine metabolic process 114
              cellular biogenic amine metabolic process 101
                polyamine metabolic process 19
                  polyamine biosynthetic process 13
                    putrescine biosynthetic process 6
                      putrescine biosynthetic process from arginine + 1
                      putrescine biosynthetic process from ornithine 4
paths to the root