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ONTOLOGY REPORT - ANNOTATIONS


Term:response to light stimulus
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Accession:GO:0009416 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.



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response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AANAT aralkylamine N-acetyltransferase involved_in ISO
IEA
RGD
TreeGrafter
PMID:18001324 GO_REF:0000118 RGD:2301033 NCBI chr17:70,401,103...70,418,551
Ensembl chr17:75,951,915...75,967,411
JBrowse link
G ASNS asparagine synthetase (glutamine-hydrolyzing) ISO transpupillary thermotherapy laser RGD PMID:16885923 RGD:2302304 NCBI chr 7:89,811,363...89,831,733
Ensembl chr 7:103,392,540...103,413,046
JBrowse link
G BDNF brain derived neurotrophic factor ISO RGD PMID:17640634 RGD:8655603 NCBI chr11:27,618,322...27,687,661
Ensembl chr11:27,520,312...27,589,239
JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 involved_in ISO PMID:12397359 RGD
UniProt
PMID:12397359 RGD:625726 NCBI chr 3:4,927,487...4,933,215
Ensembl chr 3:5,028,515...5,032,470
JBrowse link
G CLOCK clock circadian regulator ISO RGD PMID:10471199 RGD:10401879 NCBI chr 4:68,391,310...68,509,813
Ensembl chr 4:75,018,898...75,066,726
JBrowse link
G CLU clusterin ISO RGD PMID:11803476 RGD:9062370 NCBI chr 8:26,867,973...26,884,838
Ensembl chr 8:24,070,053...24,083,523
JBrowse link
G CRY1 cryptochrome circadian regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:104,558,874...104,658,833
Ensembl chr12:107,954,262...108,052,484
JBrowse link
G CRY2 cryptochrome circadian regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:45,801,504...45,837,357
Ensembl chr11:46,293,717...46,329,759
JBrowse link
G DNM2 dynamin 2 ISO RGD PMID:22666495 RGD:9685159 NCBI chr19:10,272,172...10,386,032
Ensembl chr19:10,933,672...11,106,478
JBrowse link
G DRD2 dopamine receptor D2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3639799|PMID:16715079) MGI
Ensembl
PMID:16715079 GO_REF:0000107 MGI:3639799 NCBI chr11:108,289,838...108,357,174
Ensembl chr11:112,132,703...112,198,935
JBrowse link
G DRD4 dopamine receptor D4 ISO RGD PMID:19482058 RGD:401960072 NCBI chr11:640,401...646,775 JBrowse link
G DUSP1 dual specificity phosphatase 1 ISO RGD PMID:15527789 RGD:2298681 NCBI chr 5:168,121,536...168,124,671
Ensembl chr 5:175,032,803...175,035,960
JBrowse link
G DYNLRB1 dynein light chain roadblock-type 1 ISO RGD PMID:10816553 RGD:633064 NCBI chr20:30,845,447...30,869,776
Ensembl chr20:31,976,941...32,001,199
JBrowse link
G ELK1 ETS transcription factor ELK1 ISO RGD PMID:10383826 RGD:7488912 NCBI chr  X:40,071,433...40,086,518
Ensembl chr  X:47,967,492...47,982,579
JBrowse link
G FECH ferrochelatase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:50545|PMID:1939658) MGI
Ensembl
PMID:1939658 GO_REF:0000107 MGI:50545 NCBI chr18:50,934,520...50,977,132
Ensembl chr18:54,273,527...54,312,378
JBrowse link
G FMR1 fragile X messenger ribonucleoprotein 1 ISO RGD PMID:15564573 RGD:1601175 NCBI chr  X:136,937,889...136,976,828
Ensembl chr  X:147,365,748...147,405,321
JBrowse link
G FOS Fos proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chr14:55,832,570...55,835,984
Ensembl chr14:74,676,316...74,679,766
JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chr2A:28,392,328...28,416,838
Ensembl chr2A:28,485,613...28,498,397
JBrowse link
G GJA10 gap junction protein alpha 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3654563|PMID:16820008) MGI
Ensembl
PMID:16820008 GO_REF:0000107 MGI:3654563 NCBI chr 6:87,774,889...87,776,520
Ensembl chr 6:91,046,601...91,072,335
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4366192|PMID:19815523), (MGI:4867314|PMID:21124780) MGI
Ensembl
PMID:19815523 PMID:21124780 GO_REF:0000107 MGI:4366192 MGI:4867314 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4366192|PMID:19815523), (MGI:4867314|PMID:21124780)
(MGI:4366192|PMID:19815523), (MGI:6198813|PMID:29456141)
MGI
Ensembl
PMID:19815523 PMID:21124780 PMID:29456141 GO_REF:0000107 MGI:4366192 MGI:4867314 MGI:6198813 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G GPR179 G protein-coupled receptor 179 acts_upstream_of_or_within ISO (MGI:6401030|PMID:22865473) MGI PMID:22865473 MGI:6401030 NCBI chr17:18,928,680...18,949,014
Ensembl chr17:19,244,393...19,262,707
JBrowse link
G GRIN2A glutamate ionotropic receptor NMDA type subunit 2A ISO RGD PMID:19850826 RGD:2325946 NCBI chr16:8,682,169...9,105,581
Ensembl chr16:9,919,143...10,336,167
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO (MGI:1334014|PMID:10097103) RGD
MGI
PMID:3950623 PMID:10097103 MGI:1334014 RGD:1600007 NCBI chr13:94,816,045...94,838,509
Ensembl chr13:113,867,002...113,885,610
JBrowse link
G JUNB JunB proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chr19:12,353,760...12,355,598
Ensembl chr19:13,097,931...13,098,974
JBrowse link
G JUND JunD proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:11146118 RGD:2293791 NCBI chr19:17,755,331...17,757,164 JBrowse link
G KMT2A lysine methyltransferase 2A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5638946|PMID:25834037) MGI
Ensembl
PMID:25834037 GO_REF:0000107 MGI:5638946 NCBI chr11:113,273,198...113,364,404
Ensembl chr11:117,204,820...117,290,100
JBrowse link
G LARGE1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (MGI:6401030|PMID:22865473) MGI PMID:22865473 MGI:6401030 NCBI chr22:14,077,463...14,929,250 JBrowse link
G LOC100971425 somatotropin ISO RGD PMID:19091612 RGD:2315626 NCBI chr17:58,010,848...58,013,421
Ensembl chr17:63,103,332...63,105,067
JBrowse link
G LOC100971960 unconventional myosin-XV ISO RGD PMID:21479269 RGD:150429616 NCBI chr17:32,661,499...32,723,320 JBrowse link
G MAPK10 mitogen-activated protein kinase 10 involved_in ISO (MGI:5431019|PMID:22441692) UniProt PMID:22441692 MGI:5431019 NCBI chr 4:78,326,129...78,756,794
Ensembl chr 4:89,059,579...89,392,196
JBrowse link
G MAT2A methionine adenosyltransferase 2A ISO RGD PMID:15504733 RGD:1598692 NCBI chr2A:85,589,301...85,595,437
Ensembl chr2A:87,141,857...87,148,322
JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 ISO RGD PMID:17640634 RGD:8655603 NCBI chr 9:39,663,986...40,208,770
Ensembl chr 9:84,021,837...84,372,678
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase ISO RGD PMID:15979612 RGD:8694099 NCBI chr 3:9,702,311...9,742,283
Ensembl chr 3:9,940,955...9,947,335
JBrowse link
G OPN4 opsin 4 NOT|acts_upstream_of_or_within ISO (MGI:5925970|PMID:26320947) MGI PMID:26320947 MGI:5925970 NCBI chr10:83,082,351...83,095,161
Ensembl chr10:86,641,746...86,653,143
JBrowse link
G POLG DNA polymerase gamma, catalytic subunit ISO RGD PMID:15979612 RGD:8694099 NCBI chr15:68,008,214...68,028,241
Ensembl chr15:87,214,451...87,234,739
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma involved_in ISO (MGI:3830801|PMID:19041764) UniProt PMID:19041764 MGI:3830801 NCBI chr 3:12,215,322...12,361,669
Ensembl chr 3:12,622,397...12,705,060
JBrowse link
G RHO rhodopsin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3655007|PMID:16723493) MGI
Ensembl
PMID:16723493 GO_REF:0000107 MGI:3655007 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
G RIC8A RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3692154|PMID:16221497) MGI
Ensembl
PMID:16221497 GO_REF:0000107 MGI:3692154 NCBI chr11:203,317...210,135
Ensembl chr11:248,880...255,269
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 ISO RGD PMID:17389522 RGD:9585654 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904
JBrowse link
G SLC1A2 solute carrier family 1 member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1203466|PMID:9539795) MGI
Ensembl
PMID:9539795 GO_REF:0000107 MGI:1203466 NCBI chr11:35,223,811...35,392,799
Ensembl chr11:35,107,920...35,265,878
JBrowse link
G SLC1A3 solute carrier family 1 member 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1203466|PMID:9539795) MGI
Ensembl
PMID:9539795 GO_REF:0000107 MGI:1203466 NCBI chr 5:73,679,841...73,761,591
Ensembl chr 5:78,960,797...79,042,694
JBrowse link
G SLC4A10 solute carrier family 4 member 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3772751|PMID:18165320) MGI
Ensembl
PMID:18165320 GO_REF:0000107 MGI:3772751 NCBI chr2B:48,917,958...49,278,724
Ensembl chr2B:166,371,645...166,647,554
JBrowse link
G SYNE1 spectrin repeat containing nuclear envelope protein 1 ISO RGD PMID:8700883 RGD:632616 NCBI chr 6:149,936,306...150,454,822
Ensembl chr 6:154,627,904...155,144,076
JBrowse link
G TH tyrosine hydroxylase ISO RGD PMID:21185915 RGD:5128767 NCBI chr11:2,204,820...2,212,750
Ensembl chr11:2,231,248...2,242,433
JBrowse link
adaptation of rhodopsin mediated signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH11 retinol dehydrogenase 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3584215|PMID:15790565) MGI
Ensembl
PMID:15790565 GO_REF:0000107 MGI:3584215 NCBI chr14:48,256,951...48,275,831
Ensembl chr14:67,135,366...67,154,286
JBrowse link
G RHO rhodopsin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6477072|PMID:32960171) MGI
Ensembl
PMID:32960171 GO_REF:0000107 MGI:6477072 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
G RS1 retinoschisin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3055638|PMID:15326152) MGI
Ensembl
PMID:15326152 GO_REF:0000107 MGI:3055638 NCBI chr  X:11,259,222...11,282,289
Ensembl chr  X:18,624,687...18,657,315
JBrowse link
background adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6100292|PMID:24373883) MGI
Ensembl
PMID:24373883 GO_REF:0000107 MGI:6100292 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6100292|PMID:24373883) MGI
Ensembl
PMID:24373883 GO_REF:0000107 MGI:6100292 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
blue light signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TEX47 testis expressed 47 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:80,786,625...80,788,997
Ensembl chr 7:94,435,850...94,436,611
JBrowse link
cellular response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT2 AKT serine/threonine kinase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3695811|PMID:17202487) MGI
Ensembl
PMID:17202487 GO_REF:0000107 MGI:3695811 NCBI chr19:37,275,799...37,331,971
Ensembl chr19:45,791,800...45,840,271
JBrowse link
G SLC24A4 solute carrier family 24 member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:72,956,230...73,128,851
Ensembl chr14:92,299,507...92,468,939
JBrowse link
cellular response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3696487|PMID:17234588) MGI
Ensembl
PMID:17234588 GO_REF:0000107 MGI:3696487 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha ISO RGD PMID:17475674 RGD:9068879 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885
JBrowse link
G KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 ISO RGD PMID:24202060 RGD:12910722 NCBI chr21:20,818,395...20,884,053
Ensembl chr21:34,190,043...34,190,441
JBrowse link
G LDB3 LIM domain binding 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:83,095,625...83,164,297
Ensembl chr10:86,654,737...86,722,148
Ensembl chr10:86,654,737...86,722,148
JBrowse link
G OPN1SW opsin 1, short wave sensitive involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:120,724,363...120,727,649
Ensembl chr 7:133,246,131...133,251,464
JBrowse link
G OPN3 opsin 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:217,155,765...217,202,577
Ensembl chr 1:222,136,422...222,184,598
JBrowse link
G OPN4 opsin 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:83,082,351...83,095,161
Ensembl chr10:86,641,746...86,653,143
JBrowse link
G OPN5 opsin 5 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 6:47,364,955...47,409,199
Ensembl chr 6:48,628,478...48,658,119
JBrowse link
G RGR retinal G protein coupled receptor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:80,660,589...80,674,636
Ensembl chr10:84,230,385...84,246,475
JBrowse link
G RHO rhodopsin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4849309|PMID:21052544) MGI
TreeGrafter
Ensembl
PMID:21052544 GO_REF:0000107 GO_REF:0000118 MGI:4849309 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
G RP1 RP1 axonemal microtubule associated acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4849309|PMID:21052544) MGI
Ensembl
PMID:21052544 GO_REF:0000107 MGI:4849309 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G RPGR retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chr  X:30,718,669...30,777,671 JBrowse link
G RRH retinal pigment epithelium-derived rhodopsin homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:102,322,028...102,341,974
Ensembl chr 4:112,891,370...112,909,398
JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4849309|PMID:21052544)
(MGI:4420740|PMID:19966281)
MGI
Ensembl
PMID:19966281 PMID:21052544 GO_REF:0000107 MGI:4420740 MGI:4849309 NCBI chr15:9,492,500...9,653,644
Ensembl chr15:28,530,878...28,690,947
JBrowse link
cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP1 aquaporin 1 (Colton blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,524,933...31,538,602
Ensembl chr 7:31,644,331...31,658,141
JBrowse link
G ATR ATR serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:139,482,606...139,612,274
Ensembl chr 3:147,075,185...147,196,261
JBrowse link
G AURKB aurora kinase B involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:43,447,661...43,453,864
Ensembl chr17:48,180,066...48,186,129
JBrowse link
G BAK1 BCL2 antagonist/killer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:33,146,998...33,154,755
Ensembl chr 6:34,255,769...34,263,211
JBrowse link
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3042308|PMID:14963330) MGI
Ensembl
PMID:14963330 GO_REF:0000107 MGI:3042308 NCBI chr19:45,955,926...45,962,870
Ensembl chr19:54,793,594...54,800,468
JBrowse link
G BMF Bcl2 modifying factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,026,053...19,047,008
Ensembl chr15:37,281,655...37,302,075
JBrowse link
G CASP9 caspase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:14,630,659...14,662,865
Ensembl chr 1:15,624,666...15,656,266
JBrowse link
G CDC25A cell division cycle 25A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:48,068,601...48,099,806
Ensembl chr 3:49,154,307...49,186,115
JBrowse link
G COPS9 COP9 signalosome subunit 9 involved_in ISO (PMID:26456823) UniProt PMID:26456823 NCBI chr2B:127,373,916...127,379,543
Ensembl chr2B:246,186,565...246,196,471
JBrowse link
G CREBBP CREB binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:2,645,445...2,800,975
Ensembl chr16:3,820,519...3,974,206
JBrowse link
G CUL4A cullin 4A involved_in ISO (PMID:22118460)
(MGI:6867266|PMID:22118460)
ComplexPortal PMID:22118460 MGI:6867266 NCBI chr13:94,350,484...94,409,183
Ensembl chr13:113,428,271...113,472,701
JBrowse link
G DDB1 damage specific DNA binding protein 1 involved_in ISO (PMID:22118460)
(MGI:6867266|PMID:22118460)
ComplexPortal PMID:22118460 MGI:6867266 NCBI chr11:56,599,422...56,633,140
Ensembl chr11:59,964,235...59,997,805
JBrowse link
G DDB2 damage specific DNA binding protein 2 involved_in ISO (PMID:22118460)
(MGI:6867266|PMID:22118460)
ComplexPortal PMID:22118460 MGI:6867266 NCBI chr11:47,161,345...47,185,526
Ensembl chr11:47,714,723...47,738,761
JBrowse link
G DDIAS DNA damage induced apoptosis suppressor acts_upstream_of_or_within ISO (MGI:3718924|PMID:17515607) MGI PMID:17515607 MGI:3718924 NCBI chr11:77,967,057...77,999,829
Ensembl chr11:81,579,505...81,635,075
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:151,331,468...151,382,406
Ensembl chr 3:158,885,541...158,935,871
JBrowse link
G EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in ISO (MGI:5700311|PMID:12176355) UniProt PMID:12176355 MGI:5700311 NCBI chr15:18,871,867...18,973,380
Ensembl chr15:37,120,044...37,229,211
JBrowse link
G EIF2S1 eukaryotic translation initiation factor 2 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:47,935,691...47,960,055
Ensembl chr14:66,813,953...66,839,866
JBrowse link
G EP300 E1A binding protein p300 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:21,986,467...22,076,921
Ensembl chr22:40,079,503...40,168,604
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:12,848,334...12,880,480
Ensembl chr16:14,272,417...14,304,496
JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:17873522) UniProt PMID:17873522 NCBI chr 4:144,660,676...144,874,404
Ensembl chr 4:156,312,274...156,402,351
JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,920,980...20,058,117
Ensembl chr15:38,170,982...38,307,311
JBrowse link
G KDM1A lysine demethylase 1A acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:24217620) MGI
Ensembl
PMID:24217620 GO_REF:0000107 NCBI chr 1:22,205,624...22,269,571
Ensembl chr 1:23,153,066...23,217,692
JBrowse link
G LOC100977427 60S ribosomal protein L26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:56,616,749...56,617,299
Ensembl chr17:48,009,198...48,015,977
JBrowse link
G MAPK13 mitogen-activated protein kinase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:35,689,475...35,711,990
Ensembl chr 6:36,890,974...36,899,388
JBrowse link
G MAPK9 mitogen-activated protein kinase 9 ISO RGD PMID:8875991 RGD:2304246 NCBI chr 5:175,437,167...175,495,469
Ensembl chr 5:182,748,381...182,795,135
JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:2,315,868...2,329,460
Ensembl chr14:20,392,665...20,405,906
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:124,387,561...124,393,551
Ensembl chr 8:127,131,512...127,136,863
JBrowse link
G N4BP1 NEDD4 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:28,809,881...28,881,352
Ensembl chr16:47,698,353...47,769,755
JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in ISO (PMID:17996703) BHF-UCL PMID:17996703 NCBI chr15:34,798,880...34,963,823
Ensembl chr15:53,118,411...53,283,076
JBrowse link
G NFATC4 nuclear factor of activated T cells 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709926|PMID:17242187) MGI
Ensembl
PMID:17242187 GO_REF:0000107 MGI:3709926 NCBI chr14:5,141,699...5,156,021
Ensembl chr14:23,266,702...23,279,249
JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor involved_in ISO (PMID:20959462) UniProt PMID:20959462 Ensembl chr 1:843,551...857,535 JBrowse link
G NPM1 nucleophosmin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:166,735,904...166,756,321
Ensembl chr 5:173,490,197...173,510,656
JBrowse link
G NSMCE3 NSE3 homolog, SMC5-SMC6 complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:550,856...552,543
Ensembl chr15:27,027,373...27,028,285
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:201,820,355...201,867,673
Ensembl chr 1:206,812,981...206,860,356
JBrowse link
G PBK PDZ binding kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5293269|PMID:21715333) MGI
Ensembl
PMID:21715333 GO_REF:0000107 MGI:5293269 NCBI chr 8:27,084,789...27,112,986
Ensembl chr 8:24,285,395...24,313,658
JBrowse link
G PCNA proliferating cell nuclear antigen involved_in ISO
IEA
RGD
Ensembl
PMID:8905661 GO_REF:0000107 RGD:10448977 NCBI chr20:5,134,930...5,146,603
Ensembl chr20:4,927,731...4,939,440
JBrowse link
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709926|PMID:17242187) MGI
Ensembl
PMID:17242187 GO_REF:0000107 MGI:3709926 NCBI chr 5:45,701,219...45,786,652
Ensembl chr 5:47,267,286...47,350,960
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:47,347,919...47,381,772
Ensembl chr19:56,251,356...56,297,611
JBrowse link
G POLK DNA polymerase kappa involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:39,700,659...39,788,727
Ensembl chr 5:40,311,526...40,401,003
JBrowse link
G PPP1R15A protein phosphatase 1 regulatory subunit 15A ISO RGD PMID:9811446 RGD:9999409 NCBI chr19:45,872,596...45,876,376
Ensembl chr19:54,880,141...54,883,003
JBrowse link
G PRKCD protein kinase C delta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:53,104,137...53,135,588
Ensembl chr 3:54,330,328...54,357,910
JBrowse link
G PTN pleiotrophin ISO RGD PMID:17925408 RGD:10044023 NCBI chr 7:129,184,786...129,300,815
Ensembl chr 7:141,701,430...141,705,623
JBrowse link
G PTPRK protein tyrosine phosphatase receptor type K involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:125,753,656...126,312,124
Ensembl chr 6:129,864,573...130,421,644
JBrowse link
G RBX1 ring-box 1 involved_in ISO (PMID:22118460)
(MGI:6867266|PMID:22118460)
ComplexPortal PMID:22118460 MGI:6867266 NCBI chr22:21,845,351...21,866,627
Ensembl chr22:39,941,405...39,962,175
JBrowse link
G RHBDD1 rhomboid domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:114,041,381...114,245,220
Ensembl chr2B:232,897,487...233,057,578
JBrowse link
G RHNO1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:2,999,089...3,011,911
Ensembl chr12:2,930,957...2,943,419
JBrowse link
G RNF168 ring finger protein 168 acts_upstream_of_or_within ISO (MGI:5562615|PMID:24217620) MGI PMID:24217620 MGI:5562615 NCBI chr 3:193,814,785...193,848,620
Ensembl chr 3:203,756,589...203,790,687
JBrowse link
G RPL26 ribosomal protein L26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:43,274,839...43,282,606
Ensembl chr17:48,009,198...48,015,977
JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:45,995,394...46,017,835
Ensembl chr19:54,739,474...54,761,407
JBrowse link
G SDE2 SDE2 telomere maintenance homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:201,443,945...201,460,668
Ensembl chr 1:206,441,517...206,457,679
JBrowse link
G SMPD1 sphingomyelin phosphodiesterase 1 involved_in ISO (PMID:17303575) UniProt PMID:17303575 NCBI chr11:6,521,812...6,526,349 JBrowse link
G TAF1 TATA-box binding protein associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:60,630,137...60,729,904
Ensembl chr  X:70,684,217...70,782,323
JBrowse link
G TMEM161A transmembrane protein 161A involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,557,799...18,576,722
Ensembl chr19:19,560,046...19,578,779
JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3042308|PMID:14963330) MGI
Ensembl
PMID:14963330 GO_REF:0000107 MGI:3042308 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120
JBrowse link
G TP53INP1 tumor protein p53 inducible nuclear protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2153600|PMID:11557757) MGI
Ensembl
PMID:11557757 GO_REF:0000107 MGI:2153600 NCBI chr 8:91,545,655...91,569,535
Ensembl chr 8:93,747,162...93,767,196
JBrowse link
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5014018|PMID:20511593) MGI
Ensembl
PMID:20511593 GO_REF:0000107 MGI:5014018 NCBI chr 3:48,387,762...48,389,693
Ensembl chr 3:49,470,222...49,471,331
JBrowse link
G TRIAP1 TP53 regulated inhibitor of apoptosis 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:118,025,599...118,028,045
Ensembl chr12:121,400,063...121,402,506
JBrowse link
G USP28 ubiquitin specific peptidase 28 involved_in ISO (PMID:17873522) UniProt PMID:17873522 NCBI chr11:108,676,566...108,754,372
Ensembl chr11:112,517,693...112,595,585
JBrowse link
G USP47 ubiquitin specific peptidase 47 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:12,009,770...12,127,425
Ensembl chr11:11,703,617...11,821,074
JBrowse link
G YY1 YY1 transcription factor involved_in ISO (PMID:18026119) UniProt PMID:18026119 NCBI chr14:80,859,491...80,903,651 JBrowse link
G ZBTB1 zinc finger and BTB domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:45,085,146...45,114,965
Ensembl chr14:63,354,458...63,359,403
JBrowse link
cellular response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CERS1 ceramide synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,308,265...18,334,892
Ensembl chr19:19,317,173...19,342,487
JBrowse link
G MME membrane metalloendopeptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:152,085,694...152,240,148
Ensembl chr 3:160,197,566...160,292,119
JBrowse link
G MMP1 matrix metallopeptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:97,730,545...97,739,190
Ensembl chr11:101,221,393...101,230,104
JBrowse link
G MMP2 matrix metallopeptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:35,711,866...35,738,881
Ensembl chr16:54,812,694...54,844,279
JBrowse link
G MMP3 matrix metallopeptidase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:97,776,729...97,784,549
Ensembl chr11:101,267,566...101,275,354
JBrowse link
G MMP9 matrix metallopeptidase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:42,346,305...42,354,018
Ensembl chr20:43,432,389...43,440,129
JBrowse link
G OPN1SW opsin 1, short wave sensitive involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:120,724,363...120,727,649
Ensembl chr 7:133,246,131...133,251,464
JBrowse link
G OPN3 opsin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:217,155,765...217,202,577
Ensembl chr 1:222,136,422...222,184,598
JBrowse link
G OPN5 opsin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:47,364,955...47,409,199
Ensembl chr 6:48,628,478...48,658,119
JBrowse link
G PPID peptidylprolyl isomerase D involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:151,029,144...151,043,151
Ensembl chr 4:162,839,247...162,853,245
JBrowse link
G TIMP1 TIMP metallopeptidase inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:40,018,190...40,022,636
Ensembl chr  X:47,914,906...47,919,419
JBrowse link
cellular response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN1A cyclin dependent kinase inhibitor 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:36,241,405...36,250,032
Ensembl chr 6:37,436,990...37,445,599
JBrowse link
G CRIP1 cysteine rich protein 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr14:105,914,119...105,915,365 JBrowse link
G HYAL1 hyaluronidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:50,228,491...50,238,798
Ensembl chr 3:51,463,239...51,467,286
JBrowse link
G HYAL2 hyaluronidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:50,243,926...50,248,972
Ensembl chr 3:51,479,020...51,482,551
JBrowse link
G HYAL3 hyaluronidase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:50,221,428...50,228,062
Ensembl chr 3:51,456,173...51,462,815
JBrowse link
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:60,362,635...60,555,445
Ensembl chr2B:177,818,344...178,010,556
JBrowse link
G MAPK11 mitogen-activated protein kinase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:30,492,664...30,499,456
Ensembl chr22:49,492,693...49,495,732
JBrowse link
G MAPK14 mitogen-activated protein kinase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:35,586,847...35,683,041
Ensembl chr 6:36,788,233...36,871,114
JBrowse link
G MFAP4 microfibril associated protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:31,725,732...31,729,528
Ensembl chr17:36,890,778...36,893,230
JBrowse link
G MME membrane metalloendopeptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:152,085,694...152,240,148
Ensembl chr 3:160,197,566...160,292,119
JBrowse link
G NLRP1 NLR family pyrin domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:5,562,129...5,667,765
Ensembl chr17:5,542,007...5,623,091
JBrowse link
G RPL13A ribosomal protein L13a ISO RGD PMID:10483362 RGD:11036101 NCBI chr19:46,485,729...46,504,928
Ensembl chr19:55,423,866...55,428,598
JBrowse link
G RPL35 ribosomal protein L35 ISO RGD PMID:10483362 RGD:11036101 NCBI chr 9:95,978,395...95,982,568
Ensembl chr 9:124,496,145...124,500,271
JBrowse link
G STK11 serine/threonine kinase 11 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr19:1,188,537...1,210,677 JBrowse link
cellular response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EI24 EI24 autophagy associated transmembrane protein acts_upstream_of_or_within ISO (MGI:5543725|PMID:24014029) MGI PMID:24014029 MGI:5543725 NCBI chr11:120,389,136...120,404,347
Ensembl chr11:124,302,289...124,317,346
JBrowse link
G MDM2 MDM2 proto-oncogene ISO RGD PMID:14558917 RGD:2317408 NCBI chr12:66,322,340...66,357,010
Ensembl chr12:69,102,084...69,133,278
JBrowse link
G PIERCE1 piercer of microtubule wall 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4868626|PMID:21159655) MGI
Ensembl
PMID:21159655 GO_REF:0000107 MGI:4868626 NCBI chr 9:106,635,911...106,641,274
Ensembl chr 9:135,628,471...135,633,837
JBrowse link
G POLH DNA polymerase eta acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3695544|PMID:17114294) MGI
Ensembl
PMID:17114294 GO_REF:0000107 MGI:3695544 NCBI chr 6:43,168,195...43,205,811
Ensembl chr 6:44,462,225...44,495,704
JBrowse link
G POLI DNA polymerase iota acts_upstream_of_or_within ISO (MGI:3695544|PMID:17114294) MGI PMID:17114294 MGI:3695544 NCBI chr18:47,653,545...47,706,614
Ensembl chr18:50,990,959...51,019,666
JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5543725|PMID:24014029) MGI
Ensembl
PMID:24014029 GO_REF:0000107 MGI:5543725 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120
JBrowse link
cone photoresponse recovery term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC24A4 solute carrier family 24 member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:72,956,230...73,128,851
Ensembl chr14:92,299,507...92,468,939
JBrowse link
dark adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNB5 G protein subunit beta 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5507748|PMID:23555598) MGI
Ensembl
PMID:23555598 GO_REF:0000107 MGI:5507748 NCBI chr15:31,061,310...31,122,427
Ensembl chr15:49,388,026...49,452,123
JBrowse link
G RGS9 regulator of G protein signaling 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5507748|PMID:23555598) MGI
Ensembl
PMID:23555598 GO_REF:0000107 MGI:5507748 NCBI chr17:59,085,707...59,176,368
Ensembl chr17:64,262,585...64,389,559
JBrowse link
G TENT2 terminal nucleotidyltransferase 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chr 5:35,622,645...35,696,451
Ensembl chr 5:35,893,841...35,966,932
JBrowse link
detection of light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4366192|PMID:19815523) MGI
Ensembl
PMID:19815523 GO_REF:0000107 MGI:4366192 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4366192|PMID:19815523) MGI
Ensembl
PMID:19815523 GO_REF:0000107 MGI:4366192 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G PDE6B phosphodiesterase 6B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2155023|PMID:11747369) MGI
Ensembl
PMID:11747369 GO_REF:0000107 MGI:2155023 Ensembl chr 4:646,516...701,680 JBrowse link
G RHO rhodopsin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2155023|PMID:11747369) MGI
UniProt
Ensembl
PMID:11747369 GO_REF:0000107 GO_REF:0000117 MGI:2155023 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
detection of light stimulus involved in visual perception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BEST1 bestrophin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3795256|PMID:16636205) MGI
Ensembl
PMID:16636205 GO_REF:0000107 MGI:3795256 NCBI chr11:57,314,430...57,329,450
Ensembl chr11:60,672,835...60,687,417
JBrowse link
G CACNA1F calcium voltage-gated channel subunit alpha1 F involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:41,504,804...41,533,501
Ensembl chr  X:49,356,994...49,385,678
JBrowse link
G CACNA2D4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,906,894...2,030,991
Ensembl chr12:1,857,221...1,980,769
JBrowse link
G CACNB4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3795256|PMID:16636205) MGI
Ensembl
PMID:16636205 GO_REF:0000107 MGI:3795256 NCBI chr2B:39,137,777...39,399,007
Ensembl chr2B:156,379,469...156,639,328
JBrowse link
G CCDC66 coiled-coil domain containing 66 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:56,504,388...56,557,617
Ensembl chr 3:57,720,490...57,773,326
JBrowse link
G CEP250 centrosomal protein 250 involved_in ISO (MGI:6317055|PMID:30998843) UniProt PMID:30998843 MGI:6317055 NCBI chr20:31,782,894...31,847,152
Ensembl chr20:32,903,536...32,959,714
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:38,160,056...38,249,474
Ensembl chr16:57,292,093...57,375,460
JBrowse link
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5315300|PMID:22447858) MGI
Ensembl
PMID:22447858 GO_REF:0000107 MGI:5315300 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867
JBrowse link
G GJA10 gap junction protein alpha 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3654563|PMID:16820008) MGI
Ensembl
PMID:16820008 GO_REF:0000107 MGI:3654563 NCBI chr 6:87,774,889...87,776,520
Ensembl chr 6:91,046,601...91,072,335
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3772743|PMID:18171936) MGI
Ensembl
PMID:18171936 GO_REF:0000107 MGI:3772743 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3714271|PMID:17065522) MGI
Ensembl
PMID:17065522 GO_REF:0000107 MGI:3714271 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G GRM6 glutamate metabotropic receptor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:174,142,754...174,156,294
Ensembl chr 5:181,434,031...181,447,341
JBrowse link
G GUCY2F guanylate cyclase 2F, retinal involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:98,481,609...98,590,680
Ensembl chr  X:108,952,200...109,061,441
JBrowse link
G LOC100974207 eyes shut homolog involved_in ISO (PMID:18836446), (PMID:18976725), (PMID:20696082), (PMID:22363543) CACAO PMID:18836446 PMID:18976725 PMID:20696082 PMID:22363543 NCBI chr 6:61,424,943...62,195,228 JBrowse link
G PRPH2 peripherin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5905515|PMID:28053051)
(MGI:6305433|PMID:26420485)
MGI
Ensembl
PMID:26420485 PMID:28053051 GO_REF:0000107 MGI:5905515 MGI:6305433 NCBI chr 6:42,284,818...42,316,150
Ensembl chr 6:43,582,317...43,608,011
JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of_or_within ISO (MGI:3687059|PMID:12484775) MGI PMID:12484775 MGI:3687059 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887
JBrowse link
G REEP6 receptor accessory protein 6 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr19:1,467,186...1,473,988 JBrowse link
G RGS9BP regulator of G protein signaling 9 binding protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3027216|PMID:14625292) MGI
TreeGrafter
Ensembl
PMID:14625292 GO_REF:0000107 GO_REF:0000118 MGI:3027216 NCBI chr19:29,595,159...29,597,612
Ensembl chr19:38,343,663...38,344,370
JBrowse link
G ROM1 retinal outer segment membrane protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5905515|PMID:28053051) MGI
Ensembl
PMID:28053051 GO_REF:0000107 MGI:5905515 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904
JBrowse link
G RPGRIP1 RPGR interacting protein 1 involved_in ISO (PMID:21521437) CACAO PMID:21521437 NCBI chr14:2,105,703...2,169,362
Ensembl chr14:20,185,236...20,247,064
JBrowse link
G SEMA5A semaphorin 5A acts_upstream_of_or_within ISO (MGI:5140622|PMID:21835343) MGI PMID:21835343 MGI:5140622 NCBI chr 5:9,349,473...9,852,183
Ensembl chr 5:9,168,549...9,564,356
JBrowse link
G SEMA5B semaphorin 5B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5140622|PMID:21835343) MGI
Ensembl
PMID:21835343 GO_REF:0000107 MGI:5140622 NCBI chr 3:119,996,933...120,116,899
Ensembl chr 3:126,900,966...126,986,186
JBrowse link
G TULP1 TUB like protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:35,058,422...35,073,472
Ensembl chr 6:36,151,747...36,166,160
JBrowse link
detection of UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FECH ferrochelatase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2384247|PMID:12149233) MGI
Ensembl
PMID:12149233 GO_REF:0000107 MGI:2384247 NCBI chr18:50,934,520...50,977,132
Ensembl chr18:54,273,527...54,312,378
JBrowse link
detection of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRX6 iroquois homeobox 6 acts_upstream_of_or_within ISO (MGI:5447580|PMID:23172916) MGI PMID:23172916 MGI:5447580 NCBI chr16:35,556,558...35,563,568
Ensembl chr16:54,662,732...54,669,745
JBrowse link
G OPN4 opsin 4 involved_in IEA GOC GO_REF:0000108 NCBI chr10:83,082,351...83,095,161
Ensembl chr10:86,641,746...86,653,143
JBrowse link
G OPN5 opsin 5 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:47,364,955...47,409,199
Ensembl chr 6:48,628,478...48,658,119
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO (PMID:1730053) UniProt PMID:1730053 NCBI chr  X:17,290,805...17,592,163
Ensembl chr  X:24,657,878...24,960,231
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:69,665,642...69,715,879
Ensembl chr11:72,969,844...73,018,295
JBrowse link
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5562498|PMID:23993650) MGI
Ensembl
PMID:23993650 GO_REF:0000107 MGI:5562498 NCBI chr 3:48,387,762...48,389,693
Ensembl chr 3:49,470,222...49,471,331
JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOH7 atonal bHLH transcription factor 7 involved_in ISO (MGI:5699646|PMID:26392540) UniProt PMID:26392540 MGI:5699646 NCBI chr10:64,714,546...64,716,341 JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:4,927,487...4,933,215
Ensembl chr 3:5,028,515...5,032,470
JBrowse link
G CRTC1 CREB regulated transcription coactivator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,123,375...18,221,832
Ensembl chr19:19,131,484...19,228,980
JBrowse link
G CRY1 cryptochrome circadian regulator 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr12:104,558,874...104,658,833
Ensembl chr12:107,954,262...108,052,484
JBrowse link
G CRY2 cryptochrome circadian regulator 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr11:45,801,504...45,837,357
Ensembl chr11:46,293,717...46,329,759
JBrowse link
G FBXL3 F-box and leucine rich repeat protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:58,219,260...58,244,780
Ensembl chr13:77,266,496...77,283,651
JBrowse link
G ID2 inhibitor of DNA binding 2 involved_in ISO (MGI:3838062|PMID:19217292) UniProt PMID:19217292 MGI:3838062 NCBI chr2A:8,681,592...8,684,014
Ensembl chr2A:8,847,776...8,850,720
JBrowse link
G LOC100972235 putative F-box/LRR-repeat protein 21 involved_in ISO (MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856) UniProt PMID:23452855 PMID:23452856 MGI:5470183 MGI:5487698 NCBI chr 5:131,321,680...131,342,838 JBrowse link
G LOC100977984 RNA-binding protein 4 involved_in ISO (MGI:3703208|PMID:17264215) UniProt PMID:17264215 MGI:3703208 NCBI chr11:61,996,221...62,026,007
Ensembl chr11:65,298,404...65,349,183
JBrowse link
G LOC100979219 RNA-binding protein 4B involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:62,022,622...62,035,570
Ensembl chr11:65,345,796...65,358,473
JBrowse link
G MTA1 metastasis associated 1 involved_in ISO (MGI:5582861|PMID:24089055) UniProt PMID:24089055 MGI:5582861 NCBI chr14:86,058,412...86,111,736 JBrowse link
G NR2F6 nuclear receptor subfamily 2 group F member 6 acts_upstream_of_or_within ISO (MGI:3530176|PMID:15741322) MGI PMID:15741322 MGI:3530176 NCBI chr19:16,719,444...16,733,006 JBrowse link
G OPN4 opsin 4 acts_upstream_of_or_within ISO (MGI:5925970|PMID:26320947) MGI PMID:26320947 MGI:5925970 NCBI chr10:83,082,351...83,095,161
Ensembl chr10:86,641,746...86,653,143
JBrowse link
G OPN5 opsin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:47,364,955...47,409,199
Ensembl chr 6:48,628,478...48,658,119
JBrowse link
G PDE6B phosphodiesterase 6B involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 4:646,516...701,680 JBrowse link
G PER1 period circadian regulator 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr17:43,502,080...43,518,098
Ensembl chr17:48,234,360...48,250,391
JBrowse link
G PER2 period circadian regulator 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:125,477,021...125,521,577
Ensembl chr2B:244,328,122...244,371,040
JBrowse link
G PER3 period circadian regulator 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:6,547,667...6,607,905
Ensembl chr 1:7,795,552...7,855,922
JBrowse link
G PML PML nuclear body scaffold involved_in ISO (MGI:5314433|PMID:22274616) UniProt PMID:22274616 MGI:5314433 NCBI chr15:52,903,874...52,955,151
Ensembl chr15:71,658,884...71,710,883
JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:62,756,659...62,760,369
Ensembl chr11:66,068,007...66,071,611
JBrowse link
G PPP1CB protein phosphatase 1 catalytic subunit beta involved_in ISO (MGI:5086036|PMID:21712997) UniProt PMID:21712997 MGI:5086036 NCBI chr2A:28,758,176...28,809,561
Ensembl chr2A:28,862,083...28,889,401
JBrowse link
G PPP1CC protein phosphatase 1 catalytic subunit gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:108,288,158...108,311,128
Ensembl chr12:111,681,611...111,705,658
JBrowse link
G SIK1 salt inducible kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:29,675,040...29,689,408
Ensembl chr21:42,975,920...42,987,948
JBrowse link
G TP53 tumor protein p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120
JBrowse link
G USP2 ubiquitin specific peptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:114,196,725...114,223,411
Ensembl chr11:118,124,350...118,150,868
JBrowse link
light adaption term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNB5 G protein subunit beta 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5507748|PMID:23555598) MGI
Ensembl
PMID:23555598 GO_REF:0000107 MGI:5507748 NCBI chr15:31,061,310...31,122,427
Ensembl chr15:49,388,026...49,452,123
JBrowse link
G RGS9 regulator of G protein signaling 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5507748|PMID:23555598) MGI
Ensembl
PMID:23555598 GO_REF:0000107 MGI:5507748 NCBI chr17:59,085,707...59,176,368
Ensembl chr17:64,262,585...64,389,559
JBrowse link
long-day photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGRP agouti related neuropeptide ISO RGD PMID:19490367 RGD:6480663 NCBI chr16:47,827,532...47,872,727
Ensembl chr16:67,216,008...67,217,258
JBrowse link
optokinetic behavior term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr 7:27,737,432...27,740,442
Ensembl chr 7:27,335,710...27,339,747
JBrowse link
G OPN4 opsin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:83,082,351...83,095,161
Ensembl chr10:86,641,746...86,653,143
JBrowse link
photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AANAT aralkylamine N-acetyltransferase ISO RGD PMID:12358739 RGD:628397 NCBI chr17:70,401,103...70,418,551
Ensembl chr17:75,951,915...75,967,411
JBrowse link
G DRD4 dopamine receptor D4 ISO RGD PMID:18321474 RGD:2301031 NCBI chr11:640,401...646,775 JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit ISO RGD PMID:16962714 RGD:2293767 NCBI chr2A:28,392,328...28,416,838
Ensembl chr2A:28,485,613...28,498,397
JBrowse link
G NMU neuromedin U ISO RGD PMID:17726140 RGD:1642120 NCBI chr 4:68,299,538...68,340,680
Ensembl chr 4:74,867,364...74,904,965
JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 ISO RGD PMID:21076970 RGD:10448986 NCBI chr17:17,188,390...17,196,315
Ensembl chr17:17,409,669...17,417,600
JBrowse link
phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARRB1 arrestin beta 1 acts_upstream_of_or_within ISO (MGI:3772638|PMID:11853756) MGI PMID:11853756 MGI:3772638 NCBI chr11:70,319,935...70,411,276
Ensembl chr11:73,630,276...73,654,155
JBrowse link
G CABP4 calcium binding protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3609280|PMID:16249514) MGI
Ensembl
PMID:16249514 GO_REF:0000107 MGI:3609280 NCBI chr11:62,813,477...62,820,425
Ensembl chr11:66,121,992...66,128,758
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3527312|PMID:15634774) MGI
Ensembl
PMID:15634774 GO_REF:0000107 MGI:3527312 NCBI chr16:38,160,056...38,249,474
Ensembl chr16:57,292,093...57,375,460
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1928441|PMID:11095744), (MGI:3609280|PMID:16249514), (MGI:3615719|PMID:15073279), (MGI:3757777|PMID:17881533), (MGI:3772638|PMID:11853756), (MGI:3778702|PMID:18367617) MGI
Ensembl
PMID:11095744 PMID:11853756 PMID:15073279 PMID:16249514 PMID:17881533 More... GO_REF:0000107 MGI:1928441 MGI:3609280 MGI:3615719 MGI:3757777 MGI:3772638 MGI:3778702 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3761397|PMID:17408617), (MGI:3772743|PMID:18171936)
(MGI:6150529|PMID:29518352)
MGI
Ensembl
PMID:17408617 PMID:18171936 PMID:29518352 GO_REF:0000107 MGI:3761397 MGI:3772743 MGI:6150529 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G GNGT1 G protein subunit gamma transducin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3778702|PMID:18367617) MGI
Ensembl
PMID:18367617 GO_REF:0000107 MGI:3778702 NCBI chr 7:85,839,639...85,859,844
Ensembl chr 7:99,446,623...99,451,185
JBrowse link
G GUCA1A guanylate cyclase activator 1A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) MGI
Ensembl
PMID:11493703 PMID:15173221 GO_REF:0000107 MGI:2664110 MGI:3584028 NCBI chr 6:41,693,593...41,774,591
Ensembl chr 6:43,045,307...43,070,520
JBrowse link
G GUCA1B guanylate cyclase activator 1B acts_upstream_of_or_within ISO (MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) MGI PMID:11493703 PMID:15173221 MGI:2664110 MGI:3584028 NCBI chr 6:41,771,537...41,783,364
Ensembl chr 6:43,072,469...43,083,838
JBrowse link
G LDB3 LIM domain binding 3 involved_in IEA UniProt
TreeGrafter
GO_REF:0000043 GO_REF:0000118 NCBI chr10:83,095,625...83,164,297
Ensembl chr10:86,654,737...86,722,148
Ensembl chr10:86,654,737...86,722,148
JBrowse link
G LOC100981428 acid-sensing ion channel 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3042539|PMID:14762118) MGI
Ensembl
PMID:14762118 GO_REF:0000107 MGI:3042539 NCBI chr17:22,628,322...23,774,249 JBrowse link
G OPN1SW opsin 1, short wave sensitive involved_in IEA UniProt
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000043 GO_REF:0000118 NCBI chr 7:120,724,363...120,727,649
Ensembl chr 7:133,246,131...133,251,464
JBrowse link
G OPN3 opsin 3 involved_in IEA UniProt
TreeGrafter
GO_REF:0000043 GO_REF:0000118 NCBI chr 1:217,155,765...217,202,577
Ensembl chr 1:222,136,422...222,184,598
JBrowse link
G OPN4 opsin 4 involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
UniProt
PMID:11834834 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:633348 NCBI chr10:83,082,351...83,095,161
Ensembl chr10:86,641,746...86,653,143
JBrowse link
G OPN5 opsin 5 involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:47,364,955...47,409,199
Ensembl chr 6:48,628,478...48,658,119
JBrowse link
G RCVRN recoverin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3584028|PMID:15173221) MGI
Ensembl
PMID:15173221 GO_REF:0000107 MGI:3584028 NCBI chr17:41,747,255...41,759,074
Ensembl chr17:46,490,605...46,502,962
JBrowse link
G RGR retinal G protein coupled receptor involved_in IEA InterPro
TreeGrafter
UniProt
GO_REF:0000002 GO_REF:0000043 GO_REF:0000118 NCBI chr10:80,660,589...80,674,636
Ensembl chr10:84,230,385...84,246,475
JBrowse link
G RHO rhodopsin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3655007|PMID:16723493) MGI
TreeGrafter
InterPro
Ensembl
UniProt
PMID:16723493 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 MGI:3655007 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
G RRH retinal pigment epithelium-derived rhodopsin homolog involved_in IEA UniProt
TreeGrafter
GO_REF:0000043 GO_REF:0000118 NCBI chr 4:102,322,028...102,341,974
Ensembl chr 4:112,891,370...112,909,398
JBrowse link
G SLC24A4 solute carrier family 24 member 4 acts_upstream_of
involved_in
ISO
IEA
(MGI:6116933|PMID:28650316) ARUK-UCL
Ensembl
PMID:28650316 GO_REF:0000107 MGI:6116933 NCBI chr14:72,956,230...73,128,851
Ensembl chr14:92,299,507...92,468,939
JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OPN5 opsin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:47,364,955...47,409,199
Ensembl chr 6:48,628,478...48,658,119
JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIPL1 aryl hydrocarbon receptor interacting protein like 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3054118|PMID:15365173) MGI
Ensembl
PMID:15365173 GO_REF:0000107 MGI:3054118 NCBI chr17:6,463,812...6,473,636
Ensembl chr17:6,450,420...6,461,868
JBrowse link
G CHRM1 cholinergic receptor muscarinic 1 involved_in ISO (PMID:12196552) AgBase PMID:12196552 NCBI chr11:58,261,476...58,274,685
Ensembl chr11:61,614,818...61,616,200
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G PDE6C phosphodiesterase 6C acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3655007|PMID:16723493) MGI
Ensembl
PMID:16723493 GO_REF:0000107 MGI:3655007 NCBI chr10:90,361,003...90,414,169
Ensembl chr10:93,871,704...93,924,654
JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RHO rhodopsin ISO RGD PMID:2525480 RGD:6893558 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPM1 nucleophosmin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:166,735,904...166,756,321
Ensembl chr 5:173,490,197...173,510,656
JBrowse link
regulation of rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIPL1 aryl hydrocarbon receptor interacting protein like 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3054118|PMID:15365173)
(MGI:3054134|PMID:15365178)
MGI
Ensembl
PMID:15365173 PMID:15365178 GO_REF:0000107 MGI:3054118 MGI:3054134 NCBI chr17:6,463,812...6,473,636
Ensembl chr17:6,450,420...6,461,868
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr13:94,816,045...94,838,509
Ensembl chr13:113,867,002...113,885,610
JBrowse link
regulation of translation involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100977427 60S ribosomal protein L26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:56,616,749...56,617,299
Ensembl chr17:48,009,198...48,015,977
JBrowse link
G RPL26 ribosomal protein L26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:43,274,839...43,282,606
Ensembl chr17:48,009,198...48,015,977
JBrowse link
response to blue light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPT1B carnitine palmitoyltransferase 1B involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:30,815,073...30,825,341
Ensembl chr22:49,926,893...49,935,420
JBrowse link
G DCT dopachrome tautomerase involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:75,590,366...75,730,956
Ensembl chr13:94,773,794...94,816,083
JBrowse link
G KCNJ10 potassium inwardly rectifying channel subfamily J member 10 ISO RGD PMID:18450590 RGD:2326038 NCBI chr 1:135,391,321...135,424,100 JBrowse link
G LCN2 lipocalin 2 ISO RGD PMID:30574656 RGD:126781752 NCBI chr 9:99,259,278...99,274,494
Ensembl chr 9:127,940,799...127,944,798
JBrowse link
G OPN3 opsin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:217,155,765...217,202,577
Ensembl chr 1:222,136,422...222,184,598
JBrowse link
G TYR tyrosinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:84,188,557...84,306,686
Ensembl chr11:87,769,606...87,888,138
JBrowse link
response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MMP9 matrix metallopeptidase 9 ISO RGD PMID:17854381 RGD:8547925 NCBI chr20:42,346,305...42,354,018
Ensembl chr20:43,432,389...43,440,129
JBrowse link
G RDH13 retinol dehydrogenase 13 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5462166|PMID:22605914) MGI
Ensembl
PMID:22605914 GO_REF:0000107 MGI:5462166 NCBI chr19:52,081,674...52,107,781
Ensembl chr19:60,776,114...60,794,267
JBrowse link
G SCN11A sodium voltage-gated channel alpha subunit 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:38,741,485...38,948,400
Ensembl chr 3:39,024,921...39,128,015
JBrowse link
response to light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDNF brain derived neurotrophic factor ISO RGD PMID:21076359 RGD:8655612 NCBI chr11:27,618,322...27,687,661
Ensembl chr11:27,520,312...27,589,239
JBrowse link
G CAT catalase ISO RGD PMID:17514533 RGD:9107626 NCBI chr11:34,413,253...34,446,831
Ensembl chr11:34,289,603...34,323,160
JBrowse link
G CNTF ciliary neurotrophic factor ISO RGD PMID:21076359 RGD:8655612 NCBI chr11:53,876,081...53,882,870
Ensembl chr11:57,336,792...57,341,121
JBrowse link
G CNTNAP2 contactin associated protein 2 involved_in ISO (MGI:6503588|PMID:32889171) MGI PMID:32889171 MGI:6503588 NCBI chr 7:137,858,607...140,150,820
Ensembl chr 7:150,345,240...152,626,818
JBrowse link
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5315031|PMID:22411800) MGI
Ensembl
PMID:22411800 GO_REF:0000107 MGI:5315031 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:6694179|PMID:33593858)
(MGI:4834945|PMID:20844144), (MGI:5629931|PMID:24396062), (MGI:6100292|PMID:24373883), (MGI:6389926|PMID:30799247)
RGD
Ensembl
MGI
PMID:11931744 PMID:20844144 PMID:24373883 PMID:24396062 PMID:30799247 More... GO_REF:0000107 MGI:4834945 MGI:5629931 MGI:6100292 MGI:6389926 MGI:6694179 RGD:1599009 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:6150529|PMID:29518352)
(MGI:4834945|PMID:20844144), (MGI:5545839|PMID:24403163), (MGI:5629931|PMID:24396062), (MGI:6100292|PMID:24373883), (MGI:6256887|PMID:30225342)
(MGI:5545839|PMID:24403163), (MGI:6694179|PMID:33593858)
RGD
Ensembl
MGI
PMID:17591908 PMID:20844144 PMID:24373883 PMID:24396062 PMID:24403163 More... GO_REF:0000107 MGI:4834945 MGI:5545839 MGI:5629931 MGI:6100292 MGI:6150529 MGI:6256887 MGI:6694179 RGD:2302146 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G KCNC1 potassium voltage-gated channel subfamily C member 1 ISO RGD PMID:18708127 RGD:9685740 NCBI chr11:17,788,010...17,936,591
Ensembl chr11:17,472,158...17,517,892
JBrowse link
G KCNC2 potassium voltage-gated channel subfamily C member 2 ISO RGD PMID:18708127 RGD:9685740 NCBI chr12:72,566,924...72,736,270 JBrowse link
G RHO rhodopsin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6477072|PMID:32960171) MGI
Ensembl
PMID:32960171 GO_REF:0000107 MGI:6477072 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
response to low light intensity stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 ISO RGD PMID:1683769 RGD:2326143 NCBI chr 5:67,067,001...67,091,786
Ensembl chr 5:72,116,228...72,141,050
JBrowse link
G PRPH2 peripherin 2 ISO RGD PMID:8320859 RGD:8553226 NCBI chr 6:42,284,818...42,316,150
Ensembl chr 6:43,582,317...43,608,011
JBrowse link
response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRSK1 BR serine/threonine kinase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15150265) MGI
Ensembl
PMID:15150265 GO_REF:0000107 NCBI chr19:52,326,538...52,355,060
Ensembl chr19:61,021,493...61,045,659
JBrowse link
G C10H10orf90 chromosome 10 C10orf90 homolog involved_in ISO (MGI:5285148|PMID:20843368) UniProt PMID:20843368 MGI:5285148 NCBI chr10:122,987,122...123,243,653
Ensembl chr10:127,259,451...127,357,119
JBrowse link
G CASP3 caspase 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3615714|PMID:16469926)
(MGI:3691523|PMID:11092819)
MGI
Ensembl
PMID:11092819 PMID:16469926 GO_REF:0000107 MGI:3615714 MGI:3691523 NCBI chr 4:176,793,190...176,815,023
Ensembl chr 4:189,018,422...189,040,185
JBrowse link
G CASP7 caspase 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3615714|PMID:16469926) MGI
Ensembl
PMID:16469926 GO_REF:0000107 MGI:3615714 NCBI chr10:110,273,318...110,324,800
Ensembl chr10:113,707,780...113,758,626
JBrowse link
G CASP9 caspase 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3691523|PMID:11092819) MGI
Ensembl
PMID:11092819 GO_REF:0000107 MGI:3691523 NCBI chr 1:14,630,659...14,662,865
Ensembl chr 1:15,624,666...15,656,266
JBrowse link
G CAT catalase ISO RGD PMID:12592055 RGD:9179775 NCBI chr11:34,413,253...34,446,831
Ensembl chr11:34,289,603...34,323,160
JBrowse link
G CCAR2 cell cycle and apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:21,854,803...21,870,556
Ensembl chr 8:18,794,027...18,808,571
JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2675761|PMID:12952892) MGI
Ensembl
PMID:12952892 GO_REF:0000107 MGI:2675761 NCBI chr 6:36,241,405...36,250,032
Ensembl chr 6:37,436,990...37,445,599
JBrowse link
G CDKN2D cyclin dependent kinase inhibitor 2D involved_in ISO (PMID:15750620) BHF-UCL PMID:15750620 NCBI chr19:10,118,302...10,120,957 JBrowse link
G CIRBP cold inducible RNA binding protein involved_in ISO (PMID:11574538) UniProt PMID:11574538
G COL6A1 collagen type VI alpha 1 chain acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5050594|PMID:21459131) MGI
Ensembl
PMID:21459131 GO_REF:0000107 MGI:5050594 NCBI chr21:32,322,185...32,346,850
Ensembl chr21:45,584,096...45,607,240
JBrowse link
G COL6A2 collagen type VI alpha 2 chain acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5050594|PMID:21459131) MGI
Ensembl
PMID:21459131 GO_REF:0000107 MGI:5050594 NCBI chr21:32,442,859...32,478,076
Ensembl chr21:45,710,491...45,730,895
JBrowse link
G COL6A3 collagen type VI alpha 3 chain acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5050594|PMID:21459131) MGI
Ensembl
PMID:21459131 GO_REF:0000107 MGI:5050594 NCBI chr2B:124,554,478...124,644,482 JBrowse link
G DDB2 damage specific DNA binding protein 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr11:47,161,345...47,185,526
Ensembl chr11:47,714,723...47,738,761
JBrowse link
G DTL denticleless E3 ubiquitin protein ligase homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:187,603,600...187,672,006
Ensembl chr 1:192,466,408...192,535,071
JBrowse link
G ELANE elastase, neutrophil expressed involved_in ISO (PMID:11928814) UniProt PMID:11928814 NCBI chr19:276,499...280,598 JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3692802|PMID:17020410) MGI
Ensembl
PMID:17020410 GO_REF:0000107 MGI:3692802 NCBI chr19:42,298,927...42,319,816
Ensembl chr19:50,897,004...50,915,819
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:32,983,492...33,020,492
Ensembl chr2B:127,922,483...127,959,372
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:12,848,334...12,880,480
Ensembl chr16:14,272,417...14,304,496
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease involved_in
acts_upstream_of_or_within
ISO (PMID:8710877)
(MGI:3041918|PMID:15082767)
(PMID:16167068)
UniProt
MGI
PMID:8710877 PMID:15082767 PMID:16167068 MGI:3041918 NCBI chr13:84,005,950...84,036,710
Ensembl chr13:103,096,344...103,174,182
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3054497|PMID:15340056), (MGI:3655576|PMID:10843671) MGI
Ensembl
PMID:10843671 PMID:15340056 GO_REF:0000107 MGI:3054497 MGI:3655576 NCBI chr10:44,703,720...44,784,948 JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3054497|PMID:15340056) MGI
Ensembl
PMID:15340056 GO_REF:0000107 MGI:3054497 NCBI chr 5:53,053,712...53,131,563
Ensembl chr 5:54,693,987...54,765,496
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6416735|PMID:32049342) MGI
Ensembl
PMID:32049342 GO_REF:0000107 MGI:6416735 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G HUS1 HUS1 checkpoint clamp component acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2449744|PMID:12529385)
(MGI:2156961|PMID:11790307)
MGI
Ensembl
PMID:11790307 PMID:12529385 GO_REF:0000107 MGI:2156961 MGI:2449744 NCBI chr 7:48,606,848...48,622,194
Ensembl chr 7:48,714,668...48,731,005
JBrowse link
G LOC100979315 phorbol-12-myristate-13-acetate-induced protein 1 acts_upstream_of_or_within ISO (MGI:2675761|PMID:12952892) MGI PMID:12952892 MGI:2675761 NCBI chr18:53,286,590...53,290,913
Ensembl chr18:56,611,098...56,615,449
JBrowse link
G MAP2K7 mitogen-activated protein kinase kinase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:7,205,124...7,215,776
Ensembl chr19:8,057,598...8,066,512
JBrowse link
G MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:39,286,787...39,474,780
Ensembl chr2A:40,040,497...40,228,109
JBrowse link
G MAPK8 mitogen-activated protein kinase 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:14967141) MGI
Ensembl
PMID:14967141 GO_REF:0000107 NCBI chr10:45,806,748...45,936,362 JBrowse link
G MEN1 menin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:60,159,009...60,166,222
Ensembl chr11:63,499,962...63,507,164
JBrowse link
G MSH6 mutS homolog 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2677657|PMID:14632208) MGI
Ensembl
PMID:14632208 GO_REF:0000107 MGI:2677657 NCBI chr2A:47,901,591...47,926,662
Ensembl chr2A:48,824,350...48,849,779
JBrowse link
G PCLAF PCNA clamp associated factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:43,311,115...43,331,979
Ensembl chr15:61,602,830...61,617,303
JBrowse link
G PML PML nuclear body scaffold acts_upstream_of_or_within ISO (MGI:3580934|PMID:15626733) MGI PMID:15626733 MGI:3580934 NCBI chr15:52,903,874...52,955,151
Ensembl chr15:71,658,884...71,710,883
JBrowse link
G PRIMPOL primase and DNA directed polymerase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:176,815,122...176,860,682 JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:69,581,748...69,620,721
Ensembl chr 5:74,627,830...74,666,505
JBrowse link
G RAD18 RAD18 E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (MGI:2448116|PMID:12509447) MGI PMID:12509447 MGI:2448116 NCBI chr 3:8,832,910...8,918,067
Ensembl chr 3:9,076,500...9,161,585
JBrowse link
G REV1 REV1 DNA directed polymerase involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:99,808,519...99,897,989
Ensembl chr2A:100,329,475...100,418,678
JBrowse link
G RO60 Ro60, Y RNA binding protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5524977|PMID:14680639)
(MGI:2668758|PMID:12788971)
MGI
Ensembl
PMID:12788971 PMID:14680639 GO_REF:0000107 MGI:2668758 MGI:5524977 NCBI chr 1:168,518,796...168,551,137
Ensembl chr 1:172,811,822...172,838,373
JBrowse link
G RPAIN RPA interacting protein acts_upstream_of_or_within ISO (PMID:16135809) MGI PMID:16135809 NCBI chr17:5,467,978...5,481,219
Ensembl chr17:5,460,277...5,473,568
JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,196,092...3,204,602
Ensembl chr19:4,146,057...4,154,126
JBrowse link
G SPRTN SprT-like N-terminal domain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:206,889,897...206,906,047
Ensembl chr 1:211,914,082...211,931,093
JBrowse link
G TIPIN TIMELESS interacting protein acts_upstream_of_or_within ISO (MGI:3706226|PMID:17141802) MGI PMID:17141802 MGI:3706226 NCBI chr15:45,290,350...45,310,335
Ensembl chr15:63,566,463...63,585,717
JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:1858868|PMID:10815637), (MGI:3691523|PMID:11092819)
(MGI:3032464|PMID:14744935)
(MGI:2675761|PMID:12952892)
RGD
Ensembl
MGI
PMID:10815637 PMID:11092819 PMID:12952892 PMID:14744935 PMID:17724205 GO_REF:0000107 MGI:1858868 MGI:2675761 MGI:3032464 MGI:3691523 RGD:2290562 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120
JBrowse link
G TP53I13 tumor protein p53 inducible protein 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:27,201,464...27,207,347
Ensembl chr17:27,718,175...27,722,447
JBrowse link
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5908297|PMID:28351661) MGI
Ensembl
PMID:28351661 GO_REF:0000107 MGI:5908297 NCBI chr 3:48,387,762...48,389,693
Ensembl chr 3:49,470,222...49,471,331
JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:87,819,723...87,838,684
Ensembl chr 9:116,183,746...116,185,707
JBrowse link
G TYR tyrosinase ISO RGD PMID:6175546 RGD:8694330 NCBI chr11:84,188,557...84,306,686
Ensembl chr11:87,769,606...87,888,138
JBrowse link
G UACA uveal autoantigen with coiled-coil domains and ankyrin repeats acts_upstream_of_or_within ISO (MGI:3056865|PMID:15271982) MGI PMID:15271982 MGI:3056865 NCBI chr15:49,607,308...49,711,188
Ensembl chr15:68,375,939...68,477,395
JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:108,606,271...108,617,000
Ensembl chr  X:119,034,235...119,049,655
JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:129,775,011...129,794,853
Ensembl chr 5:135,925,217...135,944,609
JBrowse link
G UBE4B ubiquitination factor E4B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,801,707...8,949,465
Ensembl chr 1:10,033,084...10,178,759
JBrowse link
G USF1 upstream transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:136,451,829...136,458,543
Ensembl chr 1:140,365,500...140,371,861
JBrowse link
G USP1 ubiquitin specific peptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:61,694,775...61,710,216
Ensembl chr 1:63,510,196...63,525,446
JBrowse link
G UVSSA UV stimulated scaffold protein A involved_in IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:1,492,716...1,532,114
Ensembl chr 4:1,373,562...1,413,982
JBrowse link
G XPA XPA, DNA damage recognition and repair factor acts_upstream_of_or_within ISO (MGI:3655576|PMID:10843671) MGI PMID:10843671 MGI:3655576 NCBI chr 9:68,726,723...68,788,049
Ensembl chr 9:96,886,795...96,909,254
JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:24,331,731...24,665,652
Ensembl chr2B:139,234,909...139,577,193
JBrowse link
response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:85,417,229...85,444,722
Ensembl chr14:105,208,128...105,236,756
JBrowse link
G CCND1 cyclin D1 involved_in ISO (PMID:18483258) BHF-UCL PMID:18483258 NCBI chr11:64,737,006...64,750,353 JBrowse link
G CRYAA crystallin alpha A acts_upstream_of_or_within ISO (MGI:1321356|PMID:9813033) MGI PMID:9813033 MGI:1321356 NCBI chr21:29,414,308...29,480,655
Ensembl chr21:42,782,991...42,786,794
JBrowse link
G EGFR epidermal growth factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:55,614,042...55,807,285
Ensembl chr 7:56,046,296...56,111,615
JBrowse link
response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1330635|PMID:10200548) MGI
Ensembl
PMID:10200548 GO_REF:0000107 MGI:1330635 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1859141|PMID:10850428), (MGI:3699047|PMID:17145777) MGI
Ensembl
PMID:10850428 PMID:17145777 GO_REF:0000107 MGI:1859141 MGI:3699047 NCBI chr10:44,703,720...44,784,948 JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (MGI:3590574|PMID:12660172) MGI PMID:12660172 MGI:3590574 NCBI chr21:25,695,582...25,702,689 JBrowse link
G IL12A interleukin 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:157,011,675...157,019,897
Ensembl chr 3:165,061,505...165,068,666
JBrowse link
G IL12B interleukin 12B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:154,706,467...154,722,231
Ensembl chr 5:161,325,303...161,335,381
JBrowse link
G IVL involucrin involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:128,254,139...128,256,893 JBrowse link
G MSH2 mutS homolog 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3487309|PMID:15166087) MGI
Ensembl
PMID:15166087 GO_REF:0000107 MGI:3487309 NCBI chr2A:47,524,468...47,602,376
Ensembl chr2A:48,447,207...48,554,461
JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,012,839...61,022,225
Ensembl chr11:64,347,859...64,356,868
JBrowse link
G TP53 tumor protein p53 ISO RGD PMID:22559303 RGD:8547754 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3034118|PMID:15010313) MGI
Ensembl
PMID:15010313 GO_REF:0000107 MGI:3034118 NCBI chr 3:14,063,499...14,097,023
Ensembl chr 3:14,403,958...14,437,377
JBrowse link
response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAK1 BCL2 antagonist/killer 1 ISO RGD PMID:19520675 RGD:2316118 NCBI chr 6:33,146,998...33,154,755
Ensembl chr 6:34,255,769...34,263,211
JBrowse link
G BCL3 BCL3 transcription coactivator involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:41,696,162...41,708,485
Ensembl chr19:50,304,171...50,313,005
JBrowse link
G BRCA2 BRCA2 DNA repair associated acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1203345|PMID:9660919) MGI
Ensembl
PMID:9660919 GO_REF:0000107 MGI:1203345 NCBI chr13:13,574,422...13,658,967
Ensembl chr13:32,010,066...32,091,332
JBrowse link
G DCUN1D3 defective in cullin neddylation 1 domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:17,508,722...17,554,042
Ensembl chr16:20,886,665...20,931,611
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:17208056) UniProt PMID:17208056 NCBI chr13:84,005,950...84,036,710
Ensembl chr13:103,096,344...103,174,182
JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (MGI:3590574|PMID:12660172) MGI PMID:12660172 MGI:3590574 NCBI chr21:25,695,582...25,702,689 JBrowse link
G MAP3K4 mitogen-activated protein kinase kinase kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:158,937,424...159,062,550
Ensembl chr 6:163,948,122...164,073,264
JBrowse link
G POLH DNA polymerase eta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:43,168,195...43,205,811
Ensembl chr 6:44,462,225...44,495,704
JBrowse link
G WRN WRN RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:30,353,643...30,492,978
Ensembl chr 8:27,541,145...27,679,855
JBrowse link
G YY1 YY1 transcription factor involved_in ISO (PMID:18026119)
(MGI:5009388|PMID:18026119)
UniProt PMID:18026119 MGI:5009388 NCBI chr14:80,859,491...80,903,651 JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNAT1 G protein subunit alpha transducin 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G OPN4 opsin 4 acts_upstream_of_or_within ISO (MGI:4438311|PMID:19793992) MGI PMID:19793992 MGI:4438311 NCBI chr10:83,082,351...83,095,161
Ensembl chr10:86,641,746...86,653,143
JBrowse link
G PCP2 Purkinje cell protein 2 acts_upstream_of_or_within ISO (MGI:3817370|PMID:18768681) MGI PMID:18768681 MGI:3817370 NCBI chr19:6,921,350...6,923,618
Ensembl chr19:7,776,331...7,779,241
JBrowse link
G RHO rhodopsin ISO RGD PMID:8814134 RGD:6893595 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
short-day photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPY neuropeptide Y ISO RGD PMID:19490367 RGD:6480663 NCBI chr 7:24,963,056...24,970,803
Ensembl chr 7:24,568,041...24,574,657
JBrowse link
UV protection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAT catalase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:34,413,253...34,446,831
Ensembl chr11:34,289,603...34,323,160
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1342943|PMID:10454634)
(MGI:3692264|PMID:16682947)
(MGI:63544|PMID:8275084)
MGI
Ensembl
PMID:8275084 PMID:10454634 PMID:16682947 GO_REF:0000107 MGI:1342943 MGI:3692264 MGI:63544 NCBI chr19:42,356,039...42,427,754
Ensembl chr19:50,951,674...50,968,430
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1267106|PMID:9651581) MGI
Ensembl
PMID:9651581 GO_REF:0000107 MGI:1267106 NCBI chr19:42,298,927...42,319,816
Ensembl chr19:50,897,004...50,915,819
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:50153|PMID:1747940) MGI
Ensembl
PMID:1747940 GO_REF:0000107 MGI:50153 NCBI chr2B:32,983,492...33,020,492
Ensembl chr2B:127,922,483...127,959,372
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3027419|PMID:14729965) MGI
Ensembl
PMID:14729965 GO_REF:0000107 MGI:3027419 NCBI chr16:12,848,334...12,880,480
Ensembl chr16:14,272,417...14,304,496
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease acts_upstream_of_or_within ISO (MGI:82906|PMID:8703115)
(MGI:77034|PMID:7510366)
MGI PMID:7510366 PMID:8703115 MGI:77034 MGI:82906 NCBI chr13:84,005,950...84,036,710
Ensembl chr13:103,096,344...103,174,182
JBrowse link
G GPX1 glutathione peroxidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:49,280,038...49,281,455
Ensembl chr 3:50,360,947...50,361,826
JBrowse link
G MFAP4 microfibril associated protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:31,725,732...31,729,528
Ensembl chr17:36,890,778...36,893,230
JBrowse link
G SDF4 stromal cell derived factor 4 involved_in ISO PMID:18355758 BHF-UCL PMID:18355758 RGD:8554427
G XPA XPA, DNA damage recognition and repair factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:68,726,723...68,788,049
Ensembl chr 9:96,886,795...96,909,254
JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR5 actin related protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:35,073,297...35,097,955
Ensembl chr20:36,181,343...36,204,996
JBrowse link
G CUL4B cullin 4B involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:109,798,279...109,870,469
Ensembl chr  X:119,985,116...120,034,702
JBrowse link
G DDB1 damage specific DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:56,599,422...56,633,140
Ensembl chr11:59,964,235...59,997,805
JBrowse link
G DDB2 damage specific DNA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:47,161,345...47,185,526
Ensembl chr11:47,714,723...47,738,761
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:42,356,039...42,427,754
Ensembl chr19:50,951,674...50,968,430
JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,920,980...20,058,117
Ensembl chr15:38,170,982...38,307,311
JBrowse link
G LOC100975117 histone H2A type 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:203,858,974...203,860,255
Ensembl chr 1:209,070,117...209,070,509
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
G XPA XPA, DNA damage recognition and repair factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:68,726,723...68,788,049
Ensembl chr 9:96,886,795...96,909,254
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:14,063,499...14,097,023
Ensembl chr 3:14,403,958...14,437,377
JBrowse link
visual behavior term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DYNLRB1 dynein light chain roadblock-type 1 involved_in ISO PMID:10816553 UniProt PMID:10816553 RGD:633064 NCBI chr20:30,845,447...30,869,776
Ensembl chr20:31,976,941...32,001,199
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4834945|PMID:20844144) MGI
Ensembl
PMID:20844144 GO_REF:0000107 MGI:4834945 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4834945|PMID:20844144), (MGI:6256887|PMID:30225342) MGI
Ensembl
PMID:20844144 PMID:30225342 GO_REF:0000107 MGI:4834945 MGI:6256887 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G SLC1A2 solute carrier family 1 member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3608234|PMID:16197522) MGI
Ensembl
PMID:16197522 GO_REF:0000107 MGI:3608234 NCBI chr11:35,223,811...35,392,799
Ensembl chr11:35,107,920...35,265,878
JBrowse link
visual learning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA7 ATP binding cassette subfamily A member 7 involved_in ISO (MGI:5774886|PMID:27030769) ARUK-UCL PMID:27030769 MGI:5774886 NCBI chr19:62,811...77,897
Ensembl chr19:1,018,095...1,042,104
JBrowse link
G ABCC8 ATP binding cassette subfamily C member 8 ISO RGD PMID:24114458 RGD:10003028 NCBI chr11:17,447,564...17,531,513
Ensembl chr11:17,133,063...17,216,870
JBrowse link
G ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:5315777|PMID:22357865) MGI PMID:22357865 MGI:5315777 NCBI chr 1:154,586,423...154,711,621
Ensembl chr 1:158,280,994...158,313,915
JBrowse link
G ADAM2 ADAM metallopeptidase domain 2 acts_upstream_of_or_within ISO (MGI:3620328|PMID:16504143) MGI PMID:16504143 MGI:3620328 NCBI chr 8:38,939,413...39,034,142
Ensembl chr 8:36,448,201...36,542,784
JBrowse link
G ADRA1B adrenoceptor alpha 1B acts_upstream_of_or_within ISO (MGI:1932224|PMID:11222061) MGI PMID:11222061 MGI:1932224 NCBI chr 5:155,307,148...155,363,785
Ensembl chr 5:161,923,895...161,979,461
JBrowse link
G AP1S2 adaptor related protein complex 1 subunit sigma 2 acts_upstream_of_or_within ISO (MGI:5617942|PMID:20203623) MGI PMID:20203623 MGI:5617942 NCBI chr  X:8,449,885...8,478,932
Ensembl chr  X:15,807,476...15,836,172
JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 acts_upstream_of_or_within ISO (MGI:3522016|PMID:14689444) MGI PMID:14689444 MGI:3522016 NCBI chr11:6,526,477...6,550,509
Ensembl chr11:6,209,812...6,225,972
JBrowse link
G APP amyloid beta precursor protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1344078|PMID:10338291) MGI
Ensembl
PMID:10338291 GO_REF:0000107 MGI:1344078 NCBI chr21:12,324,455...12,608,594
Ensembl chr21:25,684,355...25,995,072
JBrowse link
G ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3696486|PMID:17234593) MGI
Ensembl
PMID:17234593 GO_REF:0000107 MGI:3696486 NCBI chr 1:135,469,495...135,497,303
Ensembl chr 1:139,390,549...139,418,303
JBrowse link
G ATP1A3 ATPase Na+/K+ transporting subunit alpha 3 acts_upstream_of_or_within ISO (MGI:3696486|PMID:17234593)
(MGI:6102222|PMID:26501181), (MGI:6162364|PMID:26463346)
(MGI:6102714|PMID:27549929)
(MGI:6162364|PMID:26463346)
MGI PMID:17234593 PMID:26463346 PMID:26501181 PMID:27549929 MGI:3696486 MGI:6102222 MGI:6102714 MGI:6162364 NCBI chr19:38,854,243...38,882,034
Ensembl chr19:47,358,281...47,384,716
JBrowse link
G ATXN1 ataxin 1 acts_upstream_of_or_within ISO (MGI:4818500|PMID:20628574)
(MGI:1270078|PMID:9651231)
MGI PMID:9651231 PMID:20628574 MGI:1270078 MGI:4818500 NCBI chr 6:16,155,049...16,952,827
Ensembl chr 6:16,526,563...16,548,566
JBrowse link
G B3GAT1 beta-1,3-glucuronyltransferase 1 acts_upstream_of ISO (MGI:3757975|PMID:12032138) MGI PMID:12032138 MGI:3757975 NCBI chr11:129,200,676...129,269,650
Ensembl chr11:133,089,603...133,117,492
JBrowse link
G B4GALT2 beta-1,4-galactosyltransferase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3849110|PMID:19265195) MGI
Ensembl
PMID:19265195 GO_REF:0000107 MGI:3849110 NCBI chr 1:43,281,011...43,292,992
Ensembl chr 1:44,652,906...44,664,401
JBrowse link
G BRAF B-Raf proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO (MGI:3620005|PMID:16342120) MGI PMID:16342120 MGI:3620005 NCBI chr 7:132,651,908...132,855,422
Ensembl chr 7:145,138,510...145,327,115
JBrowse link
G CACNA1C calcium voltage-gated channel subunit alpha1 C acts_upstream_of_or_within ISO (MGI:3607037|PMID:16251435) MGI PMID:16251435 MGI:3607037 NCBI chr12:2,166,672...2,817,827
Ensembl chr12:2,114,140...2,744,826
JBrowse link
G CACNA1E calcium voltage-gated channel subunit alpha1 E acts_upstream_of_or_within ISO (MGI:1932239|PMID:11263998) MGI PMID:11263998 MGI:1932239 NCBI chr 1:156,796,855...157,296,987
Ensembl chr 1:160,628,089...160,949,270
JBrowse link
G CCK cholecystokinin ISO RGD PMID:12450740 RGD:1626100 NCBI chr 3:42,168,012...42,176,358
Ensembl chr 3:42,431,022...42,439,396
JBrowse link
G CDK5 cyclin dependent kinase 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3720432|PMID:17529984) MGI
Ensembl
PMID:17529984 GO_REF:0000107 MGI:3720432 NCBI chr 7:142,640,630...142,644,785
Ensembl chr 7:154,793,344...154,797,499
JBrowse link
G CHRD chordin involved_in ISO (MGI:3717982|PMID:17634368) MGI PMID:17634368 MGI:3717982 NCBI chr 3:181,417,140...181,460,236
Ensembl chr 3:189,898,856...189,908,573
JBrowse link
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1332977|PMID:10064590), (MGI:3584096|PMID:12876201) MGI
Ensembl
PMID:10064590 PMID:12876201 GO_REF:0000107 MGI:1332977 MGI:3584096 NCBI chr 1:129,922,740...129,931,582
Ensembl chr 1:133,535,023...133,547,361
JBrowse link
G CKAP5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO (MGI:5546446|PMID:23936366) MGI PMID:23936366 MGI:5546446 NCBI chr11:46,694,967...46,797,500
Ensembl chr11:47,252,752...47,329,274
JBrowse link
G COMT catechol-O-methyltransferase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5661865|PMID:24509724), (MGI:6274079|PMID:27388330) MGI
Ensembl
PMID:24509724 PMID:27388330 GO_REF:0000107 MGI:5661865 MGI:6274079 NCBI chr22:2,704,015...2,731,326
Ensembl chr22:18,375,434...18,402,387
JBrowse link
G CREB1 cAMP responsive element binding protein 1 ISO RGD PMID:25031400 RGD:10059390 NCBI chr2B:94,762,796...94,836,304
Ensembl chr2B:212,891,261...212,958,130
JBrowse link
G CRHR1 corticotropin releasing hormone receptor 1 ISO postnatal blockade improves adult learning and memory RGD PMID:15932935 RGD:1626241 NCBI chr17:11,261,435...11,313,630
Ensembl chr17:11,650,057...11,701,208
JBrowse link
G CTNS cystinosin, lysosomal cystine transporter acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3848688|PMID:17977621) MGI
Ensembl
PMID:17977621 GO_REF:0000107 MGI:3848688 NCBI chr17:3,686,903...3,711,857
Ensembl chr17:3,683,575...3,708,253
JBrowse link
G DBH dopamine beta-hydroxylase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:893736|PMID:9189272) MGI
Ensembl
PMID:9189272 GO_REF:0000107 MGI:893736 NCBI chr 9:104,761,504...104,784,445
Ensembl chr 9:133,371,821...133,393,697
JBrowse link
G DCDC2 doublecortin domain containing 2 acts_upstream_of
acts_upstream_of_or_within
ISO (MGI:5698331|PMID:25130614)
(MGI:5442271|PMID:21883923)
MGI PMID:21883923 PMID:25130614 MGI:5442271 MGI:5698331 NCBI chr 6:24,001,971...24,186,530
Ensembl chr 6:24,337,188...24,520,082
JBrowse link
G DDHD2 DDHD domain containing 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5608822|PMID:25267624) MGI
Ensembl
PMID:25267624 GO_REF:0000107 MGI:5608822 NCBI chr 8:37,533,579...37,564,864
Ensembl chr 8:34,711,446...34,741,471
JBrowse link
G DEAF1 DEAF1 transcription factor involved_in ISO (MGI:5576037|PMID:24726472) UniProt PMID:24726472 MGI:5576037 NCBI chr11:652,337...709,854 JBrowse link
G DRD1 dopamine receptor D1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530728|PMID:15684065)
(MGI:1274984|PMID:9692749), (MGI:3607822|PMID:10884517), (MGI:3607825|PMID:10585522)
MGI
Ensembl
PMID:9692749 PMID:10585522 PMID:10884517 PMID:15684065 GO_REF:0000107 MGI:1274984 MGI:3530728 MGI:3607822 MGI:3607825 NCBI chr 5:170,787,115...170,792,383
Ensembl chr 5:177,688,917...177,690,257
JBrowse link
G DRD2 dopamine receptor D2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3626135|PMID:12097513) MGI
Ensembl
PMID:12097513 GO_REF:0000107 MGI:3626135 NCBI chr11:108,289,838...108,357,174
Ensembl chr11:112,132,703...112,198,935
JBrowse link
G DRD3 dopamine receptor D3 acts_upstream_of_or_within ISO (MGI:3626135|PMID:12097513) MGI PMID:12097513 MGI:3626135 NCBI chr 3:111,265,834...111,317,176
Ensembl chr 3:118,187,636...118,237,403
JBrowse link
G DRD5 dopamine receptor D5 ISO RGD PMID:17142305 RGD:1600982 NCBI chr 4:4,189,536...4,193,144
Ensembl chr 4:9,509,094...9,510,527
JBrowse link
G FOXB1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:38,979,727...38,983,040
Ensembl chr15:57,284,077...57,285,054
JBrowse link
G GRIN1 glutamate ionotropic receptor NMDA type subunit 1 acts_upstream_of_or_within ISO (MGI:3623866|PMID:16611824), (MGI:893741|PMID:9246451)
(MGI:3703316|PMID:17313573)
(MGI:86085|PMID:9054942)
(MGI:84850|PMID:8980238)
(MGI:1858680|PMID:10818139)
MGI PMID:8980238 PMID:9054942 PMID:9246451 PMID:10818139 PMID:16611824 More... MGI:1858680 MGI:3623866 MGI:3703316 MGI:84850 MGI:86085 MGI:893741 NCBI chr 9:108,198,350...108,228,887
Ensembl chr 9:137,168,722...137,197,382
JBrowse link
G GRIN2A glutamate ionotropic receptor NMDA type subunit 2A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:70176|PMID:7816096) MGI
Ensembl
PMID:7816096 GO_REF:0000107 MGI:70176 NCBI chr16:8,682,169...9,105,581
Ensembl chr16:9,919,143...10,336,167
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2676530|PMID:12972594) MGI
Ensembl
PMID:12972594 GO_REF:0000107 MGI:2676530 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885
JBrowse link
G HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3610622|PMID:16271875) Ensembl
MGI
PMID:16271875 GO_REF:0000107 MGI:3610622 NCBI chr 5:39,936,630...39,961,519
Ensembl chr 5:40,548,919...40,573,785
JBrowse link
G HRH1 histamine receptor H1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3703474|PMID:17145090) MGI
Ensembl
PMID:17145090 GO_REF:0000107 MGI:3703474 NCBI chr 3:11,074,451...11,199,871
Ensembl chr 3:11,541,294...11,542,757
JBrowse link
G HRH2 histamine receptor H2 acts_upstream_of_or_within ISO (MGI:3703474|PMID:17145090) MGI PMID:17145090 MGI:3703474 NCBI chr 5:171,004,893...171,057,539
Ensembl chr 5:177,928,039...177,931,566
JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (MGI:73644|PMID:7774020) MGI PMID:7774020 MGI:73644 NCBI chr 4:3,215,081...3,388,587
Ensembl chr 4:3,128,718...3,283,730
JBrowse link
G IDUA alpha-L-iduronidase acts_upstream_of_or_within ISO (MGI:3771256|PMID:18022143) MGI PMID:18022143 MGI:3771256 NCBI chr 4:1,102,288...1,120,973
Ensembl chr 4:1,020,582...1,037,877
JBrowse link
G IFT20 intraflagellar transport 20 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5139967|PMID:21734285) MGI
Ensembl
PMID:21734285 GO_REF:0000107 MGI:5139967 NCBI chr17:28,438,960...28,446,113
Ensembl chr17:28,941,303...28,948,129
JBrowse link
G ITGB1 integrin subunit beta 1 acts_upstream_of_or_within ISO (MGI:5315777|PMID:22357865) MGI PMID:22357865 MGI:5315777 NCBI chr10:33,023,573...33,081,384
Ensembl chr10:33,608,978...33,644,031
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase ISO RGD PMID:11112797 RGD:2292520 NCBI chr 4:69,199,543...69,282,323
Ensembl chr 4:75,761,946...75,844,473
JBrowse link
G KMT2A lysine methyltransferase 2A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5638946|PMID:25834037) MGI
Ensembl
PMID:25834037 GO_REF:0000107 MGI:5638946 NCBI chr11:113,273,198...113,364,404
Ensembl chr11:117,204,820...117,290,100
JBrowse link
G KRAS KRAS proto-oncogene, GTPase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2157992|PMID:11793011) MGI
Ensembl
PMID:11793011 GO_REF:0000107 MGI:2157992 NCBI chr12:61,062,689...61,108,524
Ensembl chr12:63,679,293...63,724,335
JBrowse link
G LRRN4 leucine rich repeat neuronal 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5428894|PMID:15870286) MGI
Ensembl
PMID:15870286 GO_REF:0000107 MGI:5428894 NCBI chr20:6,037,097...6,052,341
Ensembl chr20:5,820,854...5,834,178
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within ISO (MGI:3611151|PMID:16399702) MGI PMID:16399702 MGI:3611151 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
G MEIS2 Meis homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5638946|PMID:25834037) MGI
Ensembl
PMID:25834037 GO_REF:0000107 MGI:5638946 NCBI chr15:15,814,739...16,025,512
Ensembl chr15:34,072,665...34,282,477
JBrowse link
G MTOR mechanistic target of rapamycin kinase ISO RGD PMID:20599569 RGD:10041021 NCBI chr 1:9,871,700...10,028,704
Ensembl chr 1:11,093,765...11,249,841
JBrowse link
G NDRG4 NDRG family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:38,729,616...38,780,173
Ensembl chr16:57,857,414...57,907,557
JBrowse link
G NETO1 neuropilin and tolloid like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:66,114,425...66,240,141
Ensembl chr18:69,408,116...69,527,333
JBrowse link
G NF1 neurofibromin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2157992|PMID:11793011)
(MGI:3610622|PMID:16271875)
(MGI:86085|PMID:9054942)
(MGI:1932770|PMID:11279521)
MGI
Ensembl
PMID:9054942 PMID:11279521 PMID:11793011 PMID:16271875 GO_REF:0000107 MGI:1932770 MGI:2157992 MGI:3610622 MGI:86085 NCBI chr17:25,425,081...25,703,689
Ensembl chr17:26,160,855...26,439,295
JBrowse link
G NLGN3 neuroligin 3 acts_upstream_of_or_within ISO (MGI:3758357|PMID:17823315) MGI PMID:17823315 MGI:3758357 NCBI chr  X:60,413,098...60,439,359
Ensembl chr  X:70,469,764...70,496,526
JBrowse link
G NOG noggin involved_in ISO
IEA
RGD
Ensembl
PMID:12740172 GO_REF:0000107 RGD:10423996 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092
JBrowse link
G NPS neuropeptide S acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3850784|PMID:19429110) MGI
Ensembl
PMID:19429110 GO_REF:0000107 MGI:3850784 NCBI chr10:124,135,616...124,139,845
Ensembl chr10:128,384,897...128,388,217
JBrowse link
G NPTN neuroplastin ISO RGD PMID:21480899 RGD:9835376 NCBI chr15:52,470,545...52,544,046
Ensembl chr15:71,229,992...71,269,579
JBrowse link
G NTS neurotensin ISO RGD PMID:20219557 RGD:9743918 NCBI chr12:83,402,313...83,410,356
Ensembl chr12:86,640,720...86,648,745
JBrowse link
G PDE1B phosphodiesterase 1B acts_upstream_of_or_within ISO (MGI:2181913|PMID:12077213)
(MGI:3761427|PMID:17010100)
MGI PMID:12077213 PMID:17010100 MGI:2181913 MGI:3761427 NCBI chr12:34,167,801...34,198,049 JBrowse link
G PDE8B phosphodiesterase 8B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5525232|PMID:22925203) MGI
Ensembl
PMID:22925203 GO_REF:0000107 MGI:5525232 NCBI chr 5:37,874,089...38,121,322
Ensembl chr 5:38,402,790...38,617,743
JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 ISO RGD PMID:25031400 RGD:10059390 NCBI chr15:47,006,718...47,141,035
Ensembl chr15:65,276,530...65,410,105
JBrowse link
G PPP1R1B protein phosphatase 1 regulatory inhibitor subunit 1B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3761427|PMID:17010100) MGI
Ensembl
PMID:17010100 GO_REF:0000107 MGI:3761427 NCBI chr17:17,652,216...17,662,085
Ensembl chr17:17,868,965...17,878,120
JBrowse link
G PTPRZ1 protein tyrosine phosphatase receptor type Z1 ISO RGD PMID:12737936 RGD:9590120 NCBI chr 7:113,882,557...114,073,283
Ensembl chr 7:126,569,630...126,758,155
JBrowse link
G RAG1 recombination activating 1 ISO RGD PMID:22964459 RGD:12907572 NCBI chr11:36,483,697...36,546,242
Ensembl chr11:36,412,420...36,422,904
JBrowse link
G RGS14 regulator of G protein signaling 14 involved_in ISO PMID:19574389 UniProt PMID:19574389 RGD:8553361 NCBI chr 5:172,659,323...172,674,084
Ensembl chr 5:179,721,876...179,739,453
JBrowse link
G RIC8A RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3692154|PMID:16221497) MGI
Ensembl
PMID:16221497 GO_REF:0000107 MGI:3692154 NCBI chr11:203,317...210,135
Ensembl chr11:248,880...255,269
JBrowse link
G SCT secretin acts_upstream_of_or_within ISO (MGI:4939559|PMID:21159798) MGI PMID:21159798 MGI:4939559 NCBI chr11:632,073...634,296 JBrowse link
G SGK1 serum/glucocorticoid regulated kinase 1 ISO both spacial learning and enrichment-induced spatial learning facilitation RGD PMID:14656333 RGD:1642778 NCBI chr 6:131,936,397...132,082,670
Ensembl chr 6:136,033,851...136,180,121
JBrowse link
G SLC7A11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO (MGI:4948153|PMID:21490221)
(MGI:5562570|PMID:24548853)
MGI PMID:21490221 PMID:24548853 MGI:4948153 MGI:5562570 NCBI chr 4:130,529,677...130,601,396
Ensembl chr 4:141,849,343...141,959,849
JBrowse link
G SYNGAP1 synaptic Ras GTPase activating protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3580530|PMID:12427827) MGI
Ensembl
PMID:12427827 GO_REF:0000107 MGI:3580530 NCBI chr 6:32,999,408...33,033,067
Ensembl chr 6:34,110,652...34,144,490
JBrowse link
G SYNPO synaptopodin involved_in ISO (MGI:2673780|PMID:12928494) SynGO-UCL PMID:12928494 MGI:2673780 NCBI chr 5:146,048,956...146,083,490
Ensembl chr 5:152,046,207...152,085,595
JBrowse link
G TAFA2 TAFA chemokine like family member 2 involved_in ISO (MGI:6282943|PMID:30137205) UniProt PMID:30137205 MGI:6282943 NCBI chr12:26,683,045...27,229,772
Ensembl chr12:27,225,154...27,502,300
JBrowse link
G TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4845797|PMID:21068316) MGI
Ensembl
PMID:21068316 GO_REF:0000107 MGI:4845797 NCBI chr2B:46,251,797...46,521,577
Ensembl chr2B:163,729,504...163,895,940
JBrowse link
G TTC36 tetratricopeptide repeat domain 36 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6362140|PMID:31537781) MGI
Ensembl
PMID:31537781 GO_REF:0000107 MGI:6362140 NCBI chr11:113,364,559...113,368,586
Ensembl chr11:117,295,191...117,298,928
JBrowse link
G ZZEF1 zinc finger ZZ-type and EF-hand domain containing 1 acts_upstream_of_or_within ISO (MGI:6507270|PMID:25709106)
(MGI:6489652|PMID:33158444)
MGI PMID:25709106 PMID:33158444 MGI:6489652 MGI:6507270 NCBI chr17:4,059,659...4,197,386
Ensembl chr17:4,054,952...4,188,735
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16490
    response to stimulus 8508
      response to abiotic stimulus 1466
        response to radiation 511
          response to light stimulus 363
            cellular response to light stimulus + 122
            cone photoresponse recovery 1
            de-etiolation 0
            detection of light stimulus + 50
            energy quenching + 0
            photoperiodism + 32
            photoprotection 0
            phototaxis + 0
            response to UV + 166
            response to blue light + 7
            response to light intensity + 22
            response to red or far red light + 1
            visual behavior + 82
paths to the root