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ONTOLOGY REPORT - ANNOTATIONS

Term:response to cold
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Accession:GO:0009409 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
Synonyms:related_synonym: freezing tolerance


show annotations for term's descendants           Sort by:
response to cold term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadl acyl-CoA dehydrogenase, long chain acts_upstream_of_or_within ISO (PMID:21151927) RGD PMID:21151927 NCBI chr 9:68,333,981...68,372,149
Ensembl chr 9:68,333,980...68,372,220 		JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3692446 (PMID:16121256)		 Ensembl
RGD		 PMID:16121256 GO_REF:0000107 NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147 		JBrowse link
G Acadvl acyl-CoA dehydrogenase, very long chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3606688 (PMID:21151927)		 Ensembl
RGD		 PMID:21151927 GO_REF:0000107 NCBI chr10:54,732,875...54,738,102
Ensembl chr10:54,732,469...54,738,075 		JBrowse link
G Acot11 acyl-CoA thioesterase 11 involved_in ISO (PMID:11696000) RGD PMID:11696000 NCBI chr 5:121,523,833...121,581,699
Ensembl chr 5:121,527,435...121,581,538 		JBrowse link
G Adrb1 adrenoceptor beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:87938|MGI:87939 (PMID:12161655), (PMID:12387862)		 Ensembl
RGD		 PMID:12161655 PMID:12387862 GO_REF:0000107 NCBI chr 1:255,771,962...255,774,973
Ensembl chr 1:255,771,597...255,807,259 		JBrowse link
G Adrb2 adrenoceptor beta 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:87937|MGI:87939 (PMID:12161655), (PMID:12387862)		 Ensembl
RGD		 PMID:12161655 PMID:12387862 GO_REF:0000107 NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512 		JBrowse link
G Adrb3 adrenoceptor beta 3 acts_upstream_of_or_within ISO MGI:87937|MGI:87938 (PMID:12161655), (PMID:12387862) RGD PMID:12161655 PMID:12387862 NCBI chr16:64,839,820...64,844,552
Ensembl chr16:64,841,788...64,844,552 		JBrowse link
G Agt angiotensinogen acts_upstream_of_or_within ISO MGI:1857121 (PMID:12574102) RGD PMID:12574102 NCBI chr19:52,529,139...52,549,618
Ensembl chr19:52,529,185...52,540,977 		JBrowse link
G Bltp1 bridge-like lipid transfer protein family member 1 acts_upstream_of_or_within ISO (PMID:36357390) RGD PMID:36357390 NCBI chr 2:119,708,114...119,924,697
Ensembl chr 2:119,708,209...119,924,695 		JBrowse link
G Cdh8 cadherin 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3707077 (PMID:17392463)		 Ensembl
RGD		 PMID:17392463 GO_REF:0000107 NCBI chr19:5,494,038...5,901,810
Ensembl chr19:5,494,174...5,895,669 		JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit involved_in IEA
ISO		 GO_REF:0000107
(PMID:19230830)		 Ensembl
RGD		 PMID:19230830 GO_REF:0000107 NCBI chr 1:116,711,559...116,837,269
Ensembl chr 1:116,714,711...116,837,240 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 6:95,128,504...95,131,281
Ensembl chr 6:95,128,350...95,131,287 		JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662 		JBrowse link
G Lipa lipase A, lysosomal acid type involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2451080|MGI:6364606 (PMID:29374543), (PMID:33357458)		 Ensembl
RGD		 PMID:29374543 PMID:33357458 GO_REF:0000107 NCBI chr 1:232,024,351...232,057,735
Ensembl chr 1:232,024,356...232,057,633 		JBrowse link
G Lrp11 LDL receptor related protein 11 involved_in ISO (PMID:25262641) RGD PMID:25262641 NCBI chr 1:2,048,307...2,108,115
Ensembl chr 1:2,079,438...2,108,110 		JBrowse link
G Metrnl meteorin-like, glial cell differentiation regulator involved_in ISS
ISO		 GO_REF:0000024
(PMID:24906147)		 UniProt
RGD		 PMID:24906147 GO_REF:0000024 NCBI chr10:106,963,880...106,977,875
Ensembl chr10:106,963,880...106,977,869 		JBrowse link
G P2rx3 purinergic receptor P2X 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1934019 (PMID:15927378)		 Ensembl
RGD		 PMID:15927378 GO_REF:0000107 NCBI chr 3:70,080,850...70,124,664
Ensembl chr 3:70,080,851...70,125,178 		JBrowse link
G Pcsk1n proprotein convertase subtilisin/kexin type 1 inhibitor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:16631141)		 Ensembl
RGD		 PMID:16631141 GO_REF:0000107 NCBI chr  X:14,580,036...14,583,478
Ensembl chr  X:14,580,038...14,583,566 		JBrowse link
G Plac8 placenta associated 8 acts_upstream_of_or_within ISO MGI:3834141 (PMID:21982742) RGD PMID:21982742 NCBI chr14:9,052,601...9,074,264
Ensembl chr14:9,063,048...9,074,264 		JBrowse link
G Rbm3 RNA binding motif protein 3 acts_upstream_of_or_within ISO (PMID:15684048) RGD PMID:15684048 NCBI chr  X:14,348,909...14,352,387
Ensembl chr  X:14,348,910...14,353,580 		JBrowse link
G Scn11a sodium voltage-gated channel alpha subunit 11 involved_in ISO MGI:6392908 (PMID:27224030) RGD PMID:27224030 NCBI chr 8:119,495,550...119,567,044
Ensembl chr 8:119,496,769...119,567,044 		JBrowse link
G Slc25a27 solute carrier family 25, member 27 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:17,306,898...17,333,942
Ensembl chr 9:17,307,023...17,332,731 		JBrowse link
G Slc27a1 solute carrier family 27 member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3038701 (PMID:17130465)		 Ensembl
RGD		 PMID:17130465 GO_REF:0000107 NCBI chr16:18,278,984...18,300,173
Ensembl chr16:18,278,984...18,296,063 		JBrowse link
G Thra thyroid hormone receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2679056 (PMID:12869545)		 Ensembl
RGD		 PMID:12869545 GO_REF:0000107 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
G Tmem135 transmembrane protein 135 acts_upstream_of_or_within ISO (PMID:21151927) RGD PMID:21151927 NCBI chr 1:143,006,343...143,279,824
Ensembl chr 1:143,006,344...143,221,171 		JBrowse link
G Trpa1 transient receptor potential cation channel, subfamily A, member 1 acts_upstream_of_or_within
involved_in		 ISO
ISS		 MGI:3624810 (PMID:12654248), (PMID:16630838)
(PMID:20547126)
GO_REF:0000024		 RGD
UniProt		 PMID:12654248 PMID:16630838 PMID:20547126 GO_REF:0000024 NCBI chr 5:4,379,862...4,434,133
Ensembl chr 5:4,379,999...4,433,570 		JBrowse link
G Trpm8 transient receptor potential cation channel, subfamily M, member 8 acts_upstream_of_or_within
involved_in		 ISO
IDA		 MGI:3716518|MGI:3716553|MGI:3716558 (PMID:12654248), (PMID:17015441), (PMID:17481391), (PMID:17481392), (PMID:17538622)
PMID:11882888		 RGD PMID:12654248 PMID:17015441 PMID:17481391 PMID:17481392 PMID:17538622 More... RGD:632416 NCBI chr 9:88,897,039...88,990,167
Ensembl chr 9:88,903,880...88,988,552 		JBrowse link
G Ucp1 uncoupling protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:24,808,782...24,816,853
Ensembl chr19:24,808,783...24,816,852 		JBrowse link
G Ucp2 uncoupling protein 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:154,839,242...154,845,612
Ensembl chr 1:154,839,209...154,845,611 		JBrowse link
G Ucp3 uncoupling protein 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:154,815,777...154,828,764
Ensembl chr 1:154,815,777...154,828,762 		JBrowse link
G Vgf VGF nerve growth factor inducible involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:16631141)		 Ensembl
RGD		 PMID:16631141 GO_REF:0000107 NCBI chr12:19,637,313...19,645,123
Ensembl chr12:19,637,320...19,640,341 		JBrowse link
G Zfp516 zinc finger protein 516 involved_in ISO (PMID:25578880) RGD PMID:25578880 NCBI chr18:76,286,453...76,386,526
Ensembl chr18:76,302,096...76,385,269 		JBrowse link
cellular response to cold term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ces1d carboxylesterase 1D acts_upstream_of_or_within ISO (PMID:30862682) RGD PMID:30862682 NCBI chr19:13,873,490...13,912,035
Ensembl chr19:13,796,623...13,912,035 		JBrowse link
G Cidea cell death-inducing DFFA-like effector a involved_in ISO (PMID:28763438) RGD PMID:28763438 NCBI chr18:60,894,917...60,920,485
Ensembl chr18:60,894,874...60,920,481 		JBrowse link
G Cirbp cold inducible RNA binding protein acts_upstream_of_or_within ISO (PMID:9151692) RGD PMID:9151692 NCBI chr 7:9,533,857...9,538,899
Ensembl chr 7:9,424,178...9,538,818 		JBrowse link
G Dnajc3 DnaJ heat shock protein family (Hsp40) member C3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:25329545)		 UniProt
RGD		 PMID:25329545 GO_REF:0000024 NCBI chr15:96,025,605...96,068,585
Ensembl chr15:96,025,624...96,065,181 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:25329545)		 UniProt
RGD		 PMID:25329545 GO_REF:0000024 NCBI chr 4:102,805,495...102,866,914
Ensembl chr 4:102,805,510...102,866,911 		JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in ISO
IEA		 (PMID:25329545)
GO_REF:0000107		 RGD
Ensembl		 PMID:25329545 GO_REF:0000107 NCBI chr 3:105,356,261...105,441,630
Ensembl chr 3:105,356,261...105,441,630 		JBrowse link
G Lipe lipase E, hormone sensitive type acts_upstream_of_or_within ISO (PMID:30862682) RGD PMID:30862682 NCBI chr 1:80,965,612...80,984,313
Ensembl chr 1:80,965,627...80,984,310 		JBrowse link
G Nfe2l1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO MGI:6101514 (PMID:29400713) RGD PMID:29400713 NCBI chr10:81,796,055...81,812,926
Ensembl chr10:81,800,366...81,832,318 		JBrowse link
G Plin1 perilipin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:30862682)		 Ensembl
RGD		 PMID:30862682 GO_REF:0000107 NCBI chr 1:133,664,294...133,676,854
Ensembl chr 1:133,664,892...133,676,828 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:30862682)		 Ensembl
RGD		 PMID:30862682 GO_REF:0000107 NCBI chr19:24,155,081...24,178,430
Ensembl chr19:24,155,090...24,178,430 		JBrowse link
G Rnf34 ring finger protein 34 involved_in IEA
ISO		 GO_REF:0000107
(PMID:22064484)		 Ensembl
RGD		 PMID:22064484 GO_REF:0000107 NCBI chr12:33,703,655...33,724,606
Ensembl chr12:33,703,673...33,724,586 		JBrowse link
G Saxo1 stabilizer of axonemal microtubules 1 involved_in ISO (PMID:25673876) RGD PMID:25673876 NCBI chr 5:100,937,134...101,093,308
Ensembl chr 5:100,937,130...101,093,281 		JBrowse link
G Saxol1 stabilizer of axonemal microtubules like 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:27,973,442...27,975,599 JBrowse link
G Scn11a sodium voltage-gated channel alpha subunit 11 involved_in IEA
ISO		 GO_REF:0000107
MGI:5608917 (PMID:25959819)		 Ensembl
RGD		 PMID:25959819 GO_REF:0000107 NCBI chr 8:119,495,550...119,567,044
Ensembl chr 8:119,496,769...119,567,044 		JBrowse link
G Slc9a1 solute carrier family 9 member A1 IEP RGD PMID:15452191 RGD:1625557 NCBI chr 5:145,576,341...145,629,630
Ensembl chr 5:145,576,334...145,629,624 		JBrowse link
G Trpa1 transient receptor potential cation channel, subfamily A, member 1 IMP RGD PMID:21068322 RGD:10043615 NCBI chr 5:4,379,862...4,434,133
Ensembl chr 5:4,379,999...4,433,570 		JBrowse link
G Ucp1 uncoupling protein 1 involved_in ISO (PMID:28763438) RGD PMID:28763438 NCBI chr19:24,808,782...24,816,853
Ensembl chr19:24,808,783...24,816,852 		JBrowse link
G Vwf von Willebrand factor IEP RGD PMID:12084999 RGD:11079231 NCBI chr 4:158,360,152...158,491,539
Ensembl chr 4:158,360,152...158,491,539 		JBrowse link
cellular response to freezing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas2 abraxas 2, BRISC complex subunit acts_upstream_of_or_within ISO MGI:88096 (PMID:22974638) RGD PMID:22974638 NCBI chr 1:187,647,078...187,672,660
Ensembl chr 1:187,647,067...187,672,655 		JBrowse link
cold acclimation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 involved_in ISO (PMID:29467283) RGD PMID:29467283 NCBI chr 7:20,135,248...20,184,757
Ensembl chr 7:20,135,375...20,184,754 		JBrowse link
G Atp5f1b ATP synthase F1 subunit beta IEP RGD PMID:9163327 RGD:13799276 NCBI chr 7:515,454...521,858
Ensembl chr 7:515,460...567,273 		JBrowse link
G Atp5mc1 ATP synthase membrane subunit c locus 1 IEP RGD PMID:9163327 RGD:13799276 NCBI chr10:81,024,056...81,026,780
Ensembl chr10:81,023,925...81,027,124
Ensembl chr10:81,023,925...81,027,124 		JBrowse link
G Mb myoglobin IEP RGD PMID:3784148 RGD:490007147 NCBI chr 7:108,759,903...108,767,134
Ensembl chr 7:108,759,904...108,767,383 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 IDA RGD PMID:21945600 RGD:6484546 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978 		JBrowse link
G Saxo1 stabilizer of axonemal microtubules 1 involved_in ISO (PMID:25673876) RGD PMID:25673876 NCBI chr 5:100,937,134...101,093,308
Ensembl chr 5:100,937,130...101,093,281 		JBrowse link
G Saxol1 stabilizer of axonemal microtubules like 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:27,973,442...27,975,599 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    response to stimulus 11005
      response to stress 4304
        response to cold 54
          cellular response to cold + 19
          cold acclimation 7
          response to freezing + 1
          vernalization response + 0
Path 2
Term Annotations click to browse term
  biological_process 20536
    response to stimulus 11005
      response to abiotic stimulus 1595
        response to temperature stimulus 194
          response to cold 54
            cellular response to cold + 19
            cold acclimation 7
            response to freezing + 1
            vernalization response + 0
paths to the root