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ONTOLOGY REPORT - ANNOTATIONS


Term:2'-deoxyribonucleotide metabolic process
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Accession:GO:0009394 term browser browse the term
Definition:The chemical reactions and pathways involving a 2'-deoxyribonucleotide, a compound consisting of 2'-deoxyribonucleoside (a base linked to a 2'-deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: 2'-deoxyribonucleotide metabolism


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dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 ISO (PMID:22556419) UniProtKB PMID:22556419 NCBI chrNW_004936555:5,929,262...5,932,334 JBrowse link
dADP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak9 adenylate kinase 9 ISO (PMID:23416111) UniProtKB PMID:23416111 NCBI chrNW_004936564:5,610,445...5,727,782 JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase ISO (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chrNW_004936472:23,151,674...23,161,292 JBrowse link
dATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase ISO (MGI:3620422|PMID:12163459) MGI PMID:12163459 MGI:3620422 NCBI chrNW_004936521:4,560,078...5,023,780 JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt1 nudix hydrolase 1 ISO (PMID:10373420) UniProtKB PMID:10373420 NCBI chrNW_004936823:7,104...22,083 JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 ISO (PMID:24141705)
(MGI:5828027|PMID:27920203)
UniProtKB
MGI
PMID:24141705, PMID:27920203 MGI:5828027 NCBI chrNW_004936561:4,180,607...4,238,623 JBrowse link
dATP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak2 adenylate kinase 2 ISO RGD PMID:5010295 RGD:5490216 NCBI chrNW_004936474:15,887,014...15,908,522 JBrowse link
G Ak3 adenylate kinase 3 ISO RGD PMID:5010295 RGD:5490216 NCBI chrNW_004936503:497,391...517,011 JBrowse link
G Guk1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chrNW_004936864:76,707...86,479 JBrowse link
G Oga O-GlcNAcase ISO RGD PMID:17573462 RGD:2305953 NCBI chrNW_004936600:3,983,983...3,996,360 JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004936474:28,147,459...28,180,779 JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chrNW_004936501:12,880,745...12,884,240 JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 ISO (PMID:31201273) RGD
UniProt
PMID:4307347, PMID:31201273 RGD:5147877 NCBI chrNW_004936864:76,707...86,479 JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 ISO (PMID:22556419) UniProtKB PMID:22556419 NCBI chrNW_004936555:5,929,262...5,932,334 JBrowse link
dGDP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak9 adenylate kinase 9 ISO (PMID:23416111) UniProtKB PMID:23416111 NCBI chrNW_004936564:5,610,445...5,727,782 JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic ISO (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chrNW_004936594:430,274...432,027 JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase ISO (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chrNW_004936472:23,151,674...23,161,292 JBrowse link
G Xdh xanthine dehydrogenase ISO (MGI:6306257|PMID:30936145) MGI PMID:30936145 MGI:6306257 NCBI chrNW_004936493:1,762,814...1,824,501 JBrowse link
dGMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chrNW_004936864:76,707...86,479 JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt1 nudix hydrolase 1 ISO (PMID:10373420), (PMID:22556419)
(MGI:77076|PMID:7592783)
UniProtKB
MGI
PMID:7592783, PMID:10373420, PMID:22556419 MGI:77076 NCBI chrNW_004936823:7,104...22,083 JBrowse link
G Nudt15 nudix hydrolase 15 ISO (PMID:22556419) UniProtKB PMID:22556419 NCBI chrNW_004936565:1,380,981...1,389,908 JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 ISO (PMID:24217394) UniProtKB PMID:24217394 NCBI chrNW_004936561:4,180,607...4,238,623 JBrowse link
dGTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dguok deoxyguanosine kinase ISO (MGI:49028|PMID:1664183), (MGI:69194|PMID:7918681) MGI PMID:1664183, PMID:7918681 MGI:49028, MGI:69194 NCBI chrNW_004936556:226,643...263,517 JBrowse link
dITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101965734 U8 snoRNA-decapping enzyme ISO (MGI:5009783|PMID:20081199) MGI PMID:20081199 MGI:5009783 NCBI chrNW_004936529:4,825,277...4,827,011 JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004936532:3,896,654...3,908,184 JBrowse link
G Dtymk deoxythymidylate kinase ISO (MGI:77260|PMID:8845311) RGD
MGI
PMID:220041, PMID:8845311 MGI:77260, RGD:5133687 NCBI chrNW_004936745:282,199...289,273 JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shmt1 serine hydroxymethyltransferase 1 ISO (MGI:3849912|PMID:19513116) BHF-UCL PMID:19513116 MGI:3849912 NCBI chrNW_004936741:1,849,239...1,877,724 JBrowse link
G Tyms thymidylate synthetase ISO (PMID:11278511), (PMID:15093541), (PMID:8845352) CAFA
RGD
PMID:8845352, PMID:9894005, PMID:11278511, PMID:15093541 RGD:1545055 NCBI chrNW_004936550:33,797...42,233 JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtymk deoxythymidylate kinase ISO RGD PMID:220041 RGD:5133687 NCBI chrNW_004936745:282,199...289,273 JBrowse link
G Tbpl1 TATA-box binding protein like 1 ISO (MGI:2159505|PMID:11861477) MGI PMID:11861477 MGI:2159505 NCBI chrNW_004936560:1,797,791...1,830,199 JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chrNW_004936501:12,880,745...12,884,240 JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779 JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004936532:3,896,654...3,908,184 JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase ISO RGD PMID:1315924, PMID:3032103 RGD:2300191, RGD:2301218 NCBI chrNW_004936471:10,670,604...10,681,356 JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5m 5',3'-nucleotidase, mitochondrial ISO (MGI:2388903|PMID:12234672) MGI PMID:12234672 MGI:2388903 NCBI chrNW_004936741:950,681...999,290 JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase ISO RGD PMID:1315924, PMID:3032103 RGD:2300191, RGD:2301218 NCBI chrNW_004936471:10,670,604...10,681,356 JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic ISO (PMID:10681516) UniProtKB PMID:10681516 NCBI chrNW_004936594:430,274...432,027 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12002
    metabolic process 7668
      organic substance metabolic process 7372
        carbohydrate derivative metabolic process 698
          deoxyribonucleotide metabolic process 28
            2'-deoxyribonucleotide metabolic process 24
              2'-deoxyribonucleotide biosynthetic process + 9
              purine deoxyribonucleotide metabolic process + 15
              pyrimidine deoxyribonucleotide metabolic process + 10
Path 2
Term Annotations click to browse term
  biological_process 12002
    metabolic process 7668
      cellular metabolic process 7071
        heterocycle metabolic process 3684
          nucleobase-containing compound metabolic process 3586
            nucleobase-containing small molecule metabolic process 359
              nucleoside phosphate metabolic process 314
                nucleotide metabolic process 304
                  deoxyribonucleotide metabolic process 28
                    2'-deoxyribonucleotide metabolic process 24
                      2'-deoxyribonucleotide biosynthetic process + 9
                      purine deoxyribonucleotide metabolic process + 15
                      pyrimidine deoxyribonucleotide metabolic process + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.