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ONTOLOGY REPORT - ANNOTATIONS


Term:2'-deoxyribonucleotide metabolic process
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Accession:GO:0009394 term browser browse the term
Definition:The chemical reactions and pathways involving a 2'-deoxyribonucleotide, a compound consisting of 2'-deoxyribonucleoside (a base linked to a 2'-deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: 2'-deoxyribonucleotide metabolism


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dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT18 nudix hydrolase 18 IEA Ensembl GO_REF:0000107 NCBI chr14:6,378,987...6,381,712
Ensembl chr14:6,377,815...6,381,596
JBrowse link
dADP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK9 adenylate kinase 9 ISO (PMID:23416111) UniProtKB PMID:23416111 NCBI chr 1:75,558,009...75,693,415 JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase ISO (MGI:3640719|PMID:10720488) MGI PMID:10720488 MGI:3640719 NCBI chr17:47,044,492...47,072,232
Ensembl chr17:47,044,495...47,072,245
JBrowse link
G URAD ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase ISO (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr11:5,353,524...5,363,481 JBrowse link
dATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADK adenosine kinase IEA Ensembl GO_REF:0000107 NCBI chr14:76,836,072...77,320,586
Ensembl chr14:76,836,095...77,322,416
JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase IEA Ensembl GO_REF:0000107 NCBI chr17:47,044,492...47,072,232
Ensembl chr17:47,044,495...47,072,245
JBrowse link
G NUDT1 nudix hydrolase 1 ISO (PMID:10373420) UniProtKB PMID:10373420 NCBI chr 3:1,567,417...1,575,801
Ensembl chr 3:1,567,114...1,576,235
JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 IEA Ensembl GO_REF:0000107 NCBI chr17:40,117,348...40,171,935
Ensembl chr17:40,112,978...40,171,895
JBrowse link
dATP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK2 adenylate kinase 2 ISO RGD PMID:5010295 RGD:5490216 NCBI chr 6:89,295,164...89,318,169 JBrowse link
G AK3 adenylate kinase 3 ISO RGD PMID:5010295 RGD:5490216 NCBI chr 1:217,236,561...217,263,144
Ensembl chr 1:217,236,482...217,261,370
JBrowse link
G GUK1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chr 2:51,247,665...51,257,481
Ensembl chr 2:51,241,952...51,257,485
JBrowse link
G OGA O-GlcNAcase ISO RGD PMID:17573462 RGD:2305953 NCBI chr14:112,822,494...112,851,215
Ensembl chr14:112,822,498...112,851,204
JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chr 6:164,161,439...164,197,429
Ensembl chr 6:164,162,515...164,197,379
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 IEA UniProt GO_REF:0000104 NCBI chr 3:17,896,426...17,900,562
Ensembl chr 3:17,886,895...17,900,563
JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:51,247,665...51,257,481
Ensembl chr 2:51,241,952...51,257,485
JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT18 nudix hydrolase 18 IEA Ensembl GO_REF:0000107 NCBI chr14:6,378,987...6,381,712
Ensembl chr14:6,377,815...6,381,596
JBrowse link
dGDP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK9 adenylate kinase 9 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:75,558,009...75,693,415 JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic ISO (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chr12:6,162,420...6,164,143
Ensembl chr12:6,139,439...6,164,142
JBrowse link
G URAD ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase ISO (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr11:5,353,524...5,363,481 JBrowse link
G XDH xanthine dehydrogenase ISO (MGI:6306257|PMID:30936145) MGI PMID:30936145 MGI:6306257 NCBI chr 3:107,987,060...108,052,043
Ensembl chr 3:107,986,528...108,080,151
JBrowse link
dGMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chr 2:51,247,665...51,257,481
Ensembl chr 2:51,241,952...51,257,485
JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT1 nudix hydrolase 1 ISO (PMID:10373420), (PMID:22556419)
(MGI:77076|PMID:7592783)
UniProtKB
MGI
PMID:7592783, PMID:10373420, PMID:22556419 MGI:77076 NCBI chr 3:1,567,417...1,575,801
Ensembl chr 3:1,567,114...1,576,235
JBrowse link
G NUDT15 nudix hydrolase 15 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr11:19,572,963...19,584,565
Ensembl chr11:19,572,644...19,584,538
JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:40,117,348...40,171,935
Ensembl chr17:40,112,978...40,171,895
JBrowse link
dGTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DGUOK deoxyguanosine kinase IEA Ensembl GO_REF:0000107 NCBI chr 3:69,054,749...69,091,366
Ensembl chr 3:69,054,760...69,091,341
JBrowse link
dITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT16 nudix hydrolase 16 ISO (MGI:5009783|PMID:20081199) MGI PMID:20081199 MGI:5009783 NCBI chr13:1,125,180...1,128,036
Ensembl chr13:1,122,541...1,128,041
JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:128,903,395...128,917,873
Ensembl chr 3:128,903,616...128,917,871
JBrowse link
G DTYMK deoxythymidylate kinase IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr15:140,248,071...140,255,803
Ensembl chr15:140,248,068...140,255,892
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:44,466,312...44,492,594
Ensembl chr15:44,466,304...44,492,406
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr12:60,414,421...60,435,451
Ensembl chr12:60,414,446...60,435,450
JBrowse link
G TYMS thymidylate synthetase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 6:105,642,730...105,660,279
Ensembl chr 6:105,640,031...105,660,601
JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:128,903,395...128,917,873
Ensembl chr 3:128,903,616...128,917,871
JBrowse link
G DTYMK deoxythymidylate kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:140,248,071...140,255,803
Ensembl chr15:140,248,068...140,255,892
JBrowse link
G TBPL1 TATA-box binding protein like 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:29,899,956...29,936,773
Ensembl chr 1:29,899,957...29,936,718
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chr 3:17,896,426...17,900,562
Ensembl chr 3:17,886,895...17,900,563
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr 6:164,161,439...164,197,429
Ensembl chr 6:164,162,515...164,197,379
JBrowse link
G CMPK2 cytidine/uridine monophosphate kinase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:128,903,395...128,917,873
Ensembl chr 3:128,903,616...128,917,871
JBrowse link
G DTYMK deoxythymidylate kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:140,248,071...140,255,803
Ensembl chr15:140,248,068...140,255,892
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:44,466,312...44,492,594
Ensembl chr15:44,466,304...44,492,406
JBrowse link
G DUT deoxyuridine triphosphatase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr 1:123,451,207...123,462,267
Ensembl chr 1:123,451,212...123,462,232
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5M 5',3'-nucleotidase, mitochondrial IEA Ensembl GO_REF:0000107 NCBI chr12:60,979,496...60,994,577
Ensembl chr12:60,979,499...60,994,582
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr 1:123,451,207...123,462,267
Ensembl chr 1:123,451,212...123,462,232
JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:6,162,420...6,164,143
Ensembl chr12:6,139,439...6,164,142
JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:60,979,496...60,994,577
Ensembl chr12:60,979,499...60,994,582
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16548
    metabolic process 10584
      organic substance metabolic process 10031
        carbohydrate derivative metabolic process 926
          deoxyribonucleotide metabolic process 31
            2'-deoxyribonucleotide metabolic process 26
              2'-deoxyribonucleotide biosynthetic process + 10
              purine deoxyribonucleotide metabolic process + 16
              pyrimidine deoxyribonucleotide metabolic process + 11
Path 2
Term Annotations click to browse term
  biological_process 16548
    metabolic process 10584
      cellular metabolic process 9574
        heterocycle metabolic process 5029
          nucleobase-containing compound metabolic process 4911
            nucleobase-containing small molecule metabolic process 506
              nucleoside phosphate metabolic process 438
                nucleotide metabolic process 430
                  deoxyribonucleotide metabolic process 31
                    2'-deoxyribonucleotide metabolic process 26
                      2'-deoxyribonucleotide biosynthetic process + 10
                      purine deoxyribonucleotide metabolic process + 16
                      pyrimidine deoxyribonucleotide metabolic process + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.