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ONTOLOGY REPORT - ANNOTATIONS


Term:2'-deoxyribonucleotide metabolic process
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Accession:GO:0009394 term browser browse the term
Definition:The chemical reactions and pathways involving a 2'-deoxyribonucleotide, a compound consisting of 2'-deoxyribonucleoside (a base linked to a 2'-deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: 2'-deoxyribonucleotide metabolism


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dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix (nucleoside diphosphate linked moiety X)-type motif 18 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr14:70,577,824...70,582,688
Ensembl chr14:70,577,637...70,582,688
JBrowse link
dADP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak9 adenylate kinase 9 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr10:41,303,432...41,433,569
Ensembl chr10:41,303,980...41,434,534
JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase IMP (MGI:3640719|PMID:10720488) MGI PMID:10720488 MGI:3640719 NCBI chr 2:163,726,571...163,750,239
Ensembl chr 2:163,726,584...163,750,239
JBrowse link
G Uox urate oxidase IDA (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr 3:146,597,149...146,631,483
Ensembl chr 3:146,570,426...146,632,305
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase IDA (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr 5:147,314,984...147,322,440
Ensembl chr 5:147,314,984...147,322,440
JBrowse link
G Urah urate (5-hydroxyiso-) hydrolase IDA (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr 7:140,834,958...140,837,971
Ensembl chr 7:140,835,018...140,837,966
JBrowse link
dATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase IMP (MGI:3620422|PMID:12163459) MGI PMID:12163459 MGI:3620422 NCBI chr14:21,052,574...21,448,569
Ensembl chr14:21,052,574...21,448,569
JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase IMP
IDA
(MGI:74163|PMID:7670465)
(MGI:72798|PMID:7731963)
(MGI:2155238|PMID:9478961), (MGI:3619310|PMID:14607964)
(MGI:76875|PMID:7592575)
MGI PMID:7592575, PMID:7670465, PMID:7731963, PMID:9478961, PMID:14607964 MGI:2155238, MGI:3619310, MGI:72798, MGI:74163, MGI:76875 NCBI chr 2:163,726,571...163,750,239
Ensembl chr 2:163,726,584...163,750,239
JBrowse link
G Nudt1 nudix (nucleoside diphosphate linked moiety X)-type motif 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 5:140,321,622...140,338,137
Ensembl chr 5:140,321,656...140,338,137
JBrowse link
G Samhd1 SAM domain and HD domain, 1 ISO
IDA
(MGI:5828027|PMID:27920203) MGI PMID:27920203 GO_REF:0000096, MGI:4834177, MGI:5828027 NCBI chr 2:157,097,534...157,135,096
Ensembl chr 2:157,097,533...157,135,265
JBrowse link
dATP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak2 adenylate kinase 2 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 4:128,993,224...129,011,529
Ensembl chr 4:128,991,958...129,011,529
JBrowse link
G Ak3 adenylate kinase 3 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr19:28,995,053...29,048,080
Ensembl chr19:29,020,833...29,047,961
JBrowse link
G Guk1 guanylate kinase 1 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr11:59,183,855...59,192,207
Ensembl chr11:59,183,875...59,192,212
JBrowse link
G Oga O-GlcNAcase ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr19:45,750,255...45,783,644
Ensembl chr19:45,750,259...45,783,837
JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 4:114,960,613...114,987,228
Ensembl chr 4:114,959,336...114,987,241
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr 7:127,256,959...127,260,667
Ensembl chr 7:127,256,959...127,260,709
JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 ISO MGI GO_REF:0000096, MGI:4417868, MGI:4834177 NCBI chr11:59,183,855...59,192,207
Ensembl chr11:59,183,875...59,192,212
JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix (nucleoside diphosphate linked moiety X)-type motif 18 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr14:70,577,824...70,582,688
Ensembl chr14:70,577,637...70,582,688
JBrowse link
dGDP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak9 adenylate kinase 9 IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr10:41,303,432...41,433,569
Ensembl chr10:41,303,980...41,434,534
JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5',3'-nucleotidase, cytosolic IDA (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chr11:115,490,420...115,492,070
Ensembl chr11:115,490,420...115,491,862
JBrowse link
G Pnp purine-nucleoside phosphorylase ISO MGI GO_REF:0000008, MGI:2154458 NCBI chr14:50,944,303...50,953,412
Ensembl chr14:50,931,082...50,965,237
JBrowse link
G Uox urate oxidase IDA (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr 3:146,597,149...146,631,483
Ensembl chr 3:146,570,426...146,632,305
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase IDA (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr 5:147,314,984...147,322,440
Ensembl chr 5:147,314,984...147,322,440
JBrowse link
G Urah urate (5-hydroxyiso-) hydrolase IDA (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr 7:140,834,958...140,837,971
Ensembl chr 7:140,835,018...140,837,966
JBrowse link
G Xdh xanthine dehydrogenase IDA (MGI:6306257|PMID:30936145) MGI PMID:30936145 MGI:6306257 NCBI chr17:73,883,895...73,950,397
Ensembl chr17:73,883,895...73,950,196
JBrowse link
dGMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr11:59,183,855...59,192,207
Ensembl chr11:59,183,875...59,192,212
JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt1 nudix (nucleoside diphosphate linked moiety X)-type motif 1 IDA
ISO
(MGI:77076|PMID:7592783) MGI PMID:7592783 GO_REF:0000096, MGI:4834177, MGI:77076 NCBI chr 5:140,321,622...140,338,137
Ensembl chr 5:140,321,656...140,338,137
JBrowse link
G Nudt15 nudix (nucleoside diphosphate linked moiety X)-type motif 15 IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr14:73,518,880...73,548,242
Ensembl chr14:73,518,877...73,548,242
JBrowse link
G Samhd1 SAM domain and HD domain, 1 IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr 2:157,097,534...157,135,096
Ensembl chr 2:157,097,533...157,135,265
JBrowse link
dGTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dguok deoxyguanosine kinase IDA (MGI:49028|PMID:1664183), (MGI:69194|PMID:7918681) MGI PMID:1664183, PMID:7918681 MGI:49028, MGI:69194 NCBI chr 6:83,480,214...83,506,969
Ensembl chr 6:83,480,217...83,506,969
JBrowse link
G Pnp purine-nucleoside phosphorylase IMP (MGI:86711|PMID:9122228)
(MGI:1859999|PMID:10859343)
MGI PMID:9122228, PMID:10859343 MGI:1859999, MGI:86711 NCBI chr14:50,944,303...50,953,412
Ensembl chr14:50,931,082...50,965,237
JBrowse link
dITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix (nucleoside diphosphate linked moiety X)-type motif 16 IGI (MGI:5009783|PMID:20081199) MGI PMID:20081199 MGI:5009783 NCBI chr 9:105,129,332...105,133,133
Ensembl chr 9:105,128,903...105,131,824
JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr12:26,469,117...26,479,837
Ensembl chr12:26,469,204...26,479,837
JBrowse link
G Dtymk deoxythymidylate kinase IDA
ISO
IBA
(MGI:77260|PMID:8845311)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:8845311, PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960, MGI:77260 NCBI chr 1:93,792,576...93,802,068
Ensembl chr 1:93,792,576...93,801,934
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:48,099,092...48,141,667
Ensembl chr 8:48,099,092...48,153,233
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 (soluble) IMP (MGI:3849912|PMID:19513116) BHF-UCL PMID:19513116 MGI:3849912 NCBI chr11:60,788,897...60,811,265
Ensembl chr11:60,788,104...60,811,718
JBrowse link
G Tyms thymidylate synthase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:4834177, MGI:6201960 NCBI chr 5:30,038,546...30,073,645
Ensembl chr 5:30,058,202...30,073,617
JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr12:26,469,117...26,479,837
Ensembl chr12:26,469,204...26,479,837
JBrowse link
G Dtymk deoxythymidylate kinase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr 1:93,792,576...93,802,068
Ensembl chr 1:93,792,576...93,801,934
JBrowse link
G Tbpl1 TATA box binding protein-like 1 IMP (MGI:2159505|PMID:11861477) MGI PMID:11861477 MGI:2159505 NCBI chr10:22,703,877...22,732,666
Ensembl chr10:22,703,879...22,731,938
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chr 7:127,256,959...127,260,667
Ensembl chr 7:127,256,959...127,260,709
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 4:114,960,613...114,987,228
Ensembl chr 4:114,959,336...114,987,241
JBrowse link
G Cmpk2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr12:26,469,117...26,479,837
Ensembl chr12:26,469,204...26,479,837
JBrowse link
G Dtymk deoxythymidylate kinase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:93,792,576...93,802,068
Ensembl chr 1:93,792,576...93,801,934
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:48,099,092...48,141,667
Ensembl chr 8:48,099,092...48,153,233
JBrowse link
G Dut deoxyuridine triphosphatase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr 2:125,247,248...125,259,049
Ensembl chr 2:125,247,190...125,258,608
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5m 5',3'-nucleotidase, mitochondrial IDA (MGI:2388903|PMID:12234672) MGI PMID:12234672 MGI:2388903 NCBI chr11:59,847,947...59,876,533
Ensembl chr11:59,839,447...59,880,968
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr 2:125,247,248...125,259,049
Ensembl chr 2:125,247,190...125,258,608
JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5',3'-nucleotidase, cytosolic IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr11:115,490,420...115,492,070
Ensembl chr11:115,490,420...115,491,862
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:59,847,947...59,876,533
Ensembl chr11:59,839,447...59,880,968
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    metabolic process 11305
      organic substance metabolic process 10760
        carbohydrate derivative metabolic process 945
          deoxyribonucleotide metabolic process 34
            2'-deoxyribonucleotide metabolic process 29
              2'-deoxyribonucleotide biosynthetic process + 10
              purine deoxyribonucleotide metabolic process + 19
              pyrimidine deoxyribonucleotide metabolic process + 11
Path 2
Term Annotations click to browse term
  biological_process 23386
    metabolic process 11305
      cellular metabolic process 10088
        heterocycle metabolic process 5336
          nucleobase-containing compound metabolic process 5206
            nucleobase-containing small molecule metabolic process 521
              nucleoside phosphate metabolic process 453
                nucleotide metabolic process 445
                  deoxyribonucleotide metabolic process 34
                    2'-deoxyribonucleotide metabolic process 29
                      2'-deoxyribonucleotide biosynthetic process + 10
                      purine deoxyribonucleotide metabolic process + 19
                      pyrimidine deoxyribonucleotide metabolic process + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.